Query 033744
Match_columns 112
No_of_seqs 121 out of 782
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 09:21:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033744.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033744hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ogh_A Eukaryotic translation 100.0 2.9E-41 1E-45 233.4 12.4 108 1-112 1-108 (108)
2 2if1_A EIF1, SUI1; translation 100.0 7.2E-41 2.5E-45 237.0 7.7 110 1-112 14-126 (126)
3 2xzm_F EIF1; ribosome, transla 100.0 3.3E-35 1.1E-39 201.1 11.2 87 26-112 15-101 (101)
4 1d1r_A Hypothetical 11.4 KD pr 99.9 6.8E-26 2.3E-30 158.3 5.5 79 22-107 25-106 (116)
5 1gxu_A Hydrogenase maturation 94.8 0.18 6.2E-06 32.6 7.6 55 45-101 12-66 (91)
6 1urr_A CG18505 protein; acylph 93.5 0.36 1.2E-05 31.7 7.1 57 45-101 16-74 (102)
7 2vh7_A Acylphosphatase-1; hydr 92.9 0.47 1.6E-05 30.9 6.9 57 45-101 13-71 (99)
8 1ulr_A Putative acylphosphatas 92.5 0.59 2E-05 29.8 6.9 55 45-100 7-63 (88)
9 2fhm_A Probable acylphosphatas 91.4 0.91 3.1E-05 29.0 6.8 54 45-98 7-62 (91)
10 1k8b_A EIF-2-beta, probable tr 91.3 0.23 7.9E-06 29.4 3.5 44 37-87 4-52 (52)
11 1w2i_A Acylphosphatase; hydrol 90.7 0.77 2.6E-05 29.5 5.9 53 45-97 9-63 (91)
12 2lxf_A Uncharacterized protein 90.6 0.73 2.5E-05 31.5 6.0 54 46-100 40-95 (121)
13 3trg_A Acylphosphatase; fatty 90.0 1.6 5.3E-05 28.5 7.1 54 45-99 17-70 (98)
14 2d74_B Translation initiation 90.0 0.4 1.4E-05 34.1 4.4 54 37-97 39-97 (148)
15 2gv1_A Probable acylphosphatas 89.3 1.1 3.7E-05 28.8 5.8 56 45-100 9-66 (92)
16 1nee_A EIF-2-beta, probable tr 88.6 0.2 6.7E-06 35.3 1.9 53 37-96 37-94 (138)
17 2bjd_A Acylphosphatase; hypert 86.7 2.3 8E-05 27.8 6.3 53 45-97 19-73 (101)
18 1aps_A Acylphosphatase; hydrol 86.7 0.35 1.2E-05 31.5 2.2 53 45-98 12-64 (98)
19 4hhu_A OR280; engineered prote 80.8 6.1 0.00021 27.7 6.6 62 38-99 39-104 (170)
20 2e9h_A EIF-5, eukaryotic trans 80.2 2.3 7.8E-05 30.4 4.4 66 29-98 27-97 (157)
21 3vth_A Hydrogenase maturation 68.1 12 0.0004 32.7 6.5 56 45-101 15-72 (761)
22 2g2k_A EIF-5, eukaryotic trans 63.1 5.3 0.00018 28.9 2.9 66 29-98 20-90 (170)
23 3cw2_K Translation initiation 63.0 0.25 8.5E-06 34.8 -4.1 54 36-95 36-94 (139)
24 2hqs_H Peptidoglycan-associate 56.2 6.8 0.00023 25.6 2.3 23 89-112 63-85 (118)
25 2aiz_P Outer membrane protein 50.7 9.2 0.00031 25.7 2.3 23 89-112 87-109 (134)
26 3cyp_B Chemotaxis protein MOTB 48.2 11 0.00036 25.3 2.3 24 88-112 65-88 (138)
27 2kgw_A Outer membrane protein 43.8 11 0.00036 24.9 1.7 24 88-112 80-103 (129)
28 3ldt_A Outer membrane protein, 43.0 21 0.00071 24.8 3.2 57 55-112 73-133 (169)
29 4erh_A Outer membrane protein 42.3 11 0.00038 25.3 1.6 26 86-112 78-103 (148)
30 2jvf_A De novo protein M7; tet 41.3 66 0.0023 20.4 6.7 73 30-111 8-87 (96)
31 3oon_A Outer membrane protein 40.6 17 0.00057 23.5 2.3 58 54-112 35-97 (123)
32 1r1m_A Outer membrane protein 39.7 17 0.00057 25.4 2.3 24 88-112 71-94 (164)
33 3hyi_A Protein DUF199/WHIA; la 37.3 1.3E+02 0.0044 23.1 7.2 59 47-107 98-162 (295)
34 3s06_A Motility protein B; pep 37.0 16 0.00054 25.1 1.8 25 87-112 92-116 (166)
35 4g9i_A Hydrogenase maturation 36.6 51 0.0017 28.6 5.3 55 45-99 7-63 (772)
36 2qsw_A Methionine import ATP-b 36.0 62 0.0021 20.2 4.5 22 80-101 69-92 (100)
37 1in0_A YAJQ protein, HI1034; a 34.8 37 0.0013 24.3 3.5 54 41-100 94-151 (163)
38 2k1s_A Inner membrane lipoprot 34.6 18 0.00061 24.5 1.7 24 88-112 90-113 (149)
39 2dsm_A Hypothetical protein YQ 34.5 29 0.00098 21.7 2.5 32 67-101 24-58 (72)
40 2y3m_A Emhofq, protein transpo 34.2 64 0.0022 21.9 4.7 55 52-108 114-174 (175)
41 3s0y_A Motility protein B; pep 33.5 24 0.00081 24.9 2.3 28 84-112 116-143 (193)
42 3e19_A FEOA; transcriptional r 32.8 49 0.0017 19.5 3.4 29 80-110 17-45 (77)
43 3td3_A Outer membrane protein 30.7 31 0.0011 22.2 2.4 58 54-112 32-94 (123)
44 2nlv_A XISI protein-like; XISI 28.9 28 0.00096 23.4 1.9 29 80-109 67-96 (112)
45 3khn_A MOTB protein, putative; 28.8 26 0.00088 24.3 1.8 25 87-112 111-135 (174)
46 3ced_A Methionine import ATP-b 28.6 74 0.0025 20.0 3.9 46 56-101 34-90 (98)
47 2lx9_A Ferrous iron transport 28.3 58 0.002 19.9 3.3 30 81-110 11-40 (83)
48 3d7q_A XISI protein-like; stru 27.8 28 0.00096 23.4 1.7 29 80-109 67-96 (112)
49 2nwv_A XISI protein-like; YP_3 27.8 30 0.001 23.3 1.9 29 80-109 69-98 (114)
50 2zvy_A Chemotaxis protein MOTB 26.8 51 0.0018 23.2 3.1 25 87-112 119-144 (183)
51 1zat_A L,D-transpeptidase; L,D 26.7 85 0.0029 22.7 4.4 42 36-77 70-112 (250)
52 3dhx_A Methionine import ATP-b 26.7 60 0.002 20.7 3.2 44 58-101 37-90 (106)
53 3dzc_A UDP-N-acetylglucosamine 26.2 88 0.003 23.9 4.6 57 37-103 22-79 (396)
54 2l26_A Uncharacterized protein 24.5 46 0.0016 25.1 2.6 24 88-112 227-250 (284)
55 4ici_A Putative flavoprotein; 24.4 1.7E+02 0.0057 19.8 5.6 55 38-101 116-170 (171)
56 1dd4_C 50S ribosomal protein L 22.1 57 0.0019 17.9 2.0 20 52-71 15-34 (40)
57 2zf8_A MOTY, component of sodi 21.7 37 0.0013 25.7 1.6 24 88-112 219-242 (278)
58 2qrr_A Methionine import ATP-b 21.7 1.1E+02 0.0039 18.9 3.8 44 58-101 39-92 (101)
59 2eke_C Ubiquitin-like protein 21.6 1.7E+02 0.0058 18.8 5.7 55 11-69 11-67 (106)
60 2h3j_A Hypothetical protein PA 20.9 67 0.0023 18.6 2.4 30 81-110 12-41 (75)
61 2gcx_A FEOA, ferrous iron tran 20.6 49 0.0017 19.4 1.7 30 81-110 11-40 (75)
62 2v8q_B 5'-AMP-activated protei 20.4 1.4E+02 0.0049 19.0 4.0 21 26-46 62-82 (87)
63 2gx5_A GTP-sensing transcripti 20.0 78 0.0027 22.5 2.9 50 52-104 31-83 (170)
No 1
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-41 Score=233.43 Aligned_cols=108 Identities=51% Similarity=0.888 Sum_probs=101.4
Q ss_pred CCcccccCCCCCCCCcCCcCCCCCCCCceEEEEEEEecCCeeEEEEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCe
Q 033744 1 MVDIDSQIPTSYDPFADIKDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGK 80 (112)
Q Consensus 1 ~~~~~~~~~~~~dpf~~~~~~~~~~~~~~I~I~~~~R~grK~VT~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~ 80 (112)
|| ++|+ .+||||+++.+ ++++..++|+|++++|+|||+||+|+||+.++|+++|||+||++|||||||+++|++++
T Consensus 1 m~-~~~~--~~~dpf~~~~~-~~~~~~~~V~Ir~~~R~g~K~VT~V~Gl~~~~dlk~lak~lKkk~acggsV~~~~~~g~ 76 (108)
T 2ogh_A 1 MS-IENL--KSFDPFADTGD-DETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNGNIVKDPEMGE 76 (108)
T ss_dssp CC-SSCC--SCCCCCCCCCC-CCCCCSCSEEEEEECCSSSCCEEEEECCCTTSCHHHHHHHHHHHHCCCEEEECCTTSSC
T ss_pred Cc-cccc--CCCCccccccc-cccCCCCeEEEEEEEccCCceEEEEeCCCcchhHHHHHHHHHHHhcCceEEecCCCCce
Confidence 77 8887 49999999943 45788999999999999999999999999889999999999999999999999999889
Q ss_pred EEEEcCchhHHHHHHHHhCCCCCCCCeEEccC
Q 033744 81 VIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112 (112)
Q Consensus 81 ~I~lQGD~~~~i~~~L~~~G~~~~~~I~ihg~ 112 (112)
+|+||||||++|.++|.++|++|+++|+||||
T Consensus 77 ~I~iQGD~r~~v~~~L~~~g~~~~~~I~vhg~ 108 (108)
T 2ogh_A 77 IIQLQGDQRAKVCEFMISQLGLQKKNIKIHGF 108 (108)
T ss_dssp EEEEESSCHHHHHHHHHHHHTSCCSCEEECCC
T ss_pred EEEEcCCHHHHHHHHHHHcCCCCHHHEEEcCC
Confidence 99999999999999999999999999999998
No 2
>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1
Probab=100.00 E-value=7.2e-41 Score=237.05 Aligned_cols=110 Identities=48% Similarity=0.881 Sum_probs=103.1
Q ss_pred CCcccccCCCCCCCCcCCcCCC---CCCCCceEEEEEEEecCCeeEEEEecCCCchhHHHHHHHHhhHhccCcEEEecCC
Q 033744 1 MVDIDSQIPTSYDPFADIKDSL---APGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKV 77 (112)
Q Consensus 1 ~~~~~~~~~~~~dpf~~~~~~~---~~~~~~~I~I~~~~R~grK~VT~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~ 77 (112)
||+++|+ .+||||+++.+++ .+++.++|+|++++|+|||+||+|+||+.++|+++|||+||++|||||||+++|+
T Consensus 14 ~~~~~~~--~~fdpfa~~~~~~~~~~~g~~~~V~Ir~~~R~grK~VT~V~GL~~~~dlk~laK~LKkk~acgGtVk~~~e 91 (126)
T 2if1_A 14 MSAIQNL--HSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPE 91 (126)
T ss_dssp GGGCSCC--CCCCTTSSCCCCSSCCSCSCTTCEECCCCCSSSSCCBCEEBSCCTTSCHHHHHTTHHHHTCCCEEEECCTT
T ss_pred hhhcccC--CCCCchhhhccccccccCCCCCeEEEEEEeecCCccEEEEeCCCCchhHHHHHHHHHHHhcCCeEEecCCC
Confidence 8899997 4999999987654 4588899999999999999999999999889999999999999999999999888
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCCCCCeEEccC
Q 033744 78 LGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112 (112)
Q Consensus 78 ~g~~I~lQGD~~~~i~~~L~~~G~~~~~~I~ihg~ 112 (112)
++++|+||||||++|.+||.++||+++++|+||||
T Consensus 92 ~g~~I~IQGD~r~~I~~~L~~~G~~~~~~I~vhgf 126 (126)
T 2if1_A 92 YGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 126 (126)
T ss_dssp TSSEEEESBCCHHHHHHHHHHHTSSCTTTEECCCC
T ss_pred CccEEEEcCCHHHHHHHHHHHcCCCChhhEEeeCC
Confidence 88999999999999999999999988999999998
No 3
>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F
Probab=100.00 E-value=3.3e-35 Score=201.13 Aligned_cols=87 Identities=44% Similarity=0.765 Sum_probs=84.3
Q ss_pred CCceEEEEEEEecCCeeEEEEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhCCCCCCC
Q 033744 26 DKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKD 105 (112)
Q Consensus 26 ~~~~I~I~~~~R~grK~VT~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~G~~~~~ 105 (112)
..++|+|++++|+|||.||+|+||+.++|+++|||.||++|||||||+++|+++++|+||||||++|.+||.++|++|++
T Consensus 15 ~~~~v~I~~~~R~g~K~VT~V~Gl~~~~dlk~laK~lKkk~acggsV~~~~~~g~~I~iQGD~r~~v~~~L~~~G~~~~~ 94 (101)
T 2xzm_F 15 FQTHIHIRVEQRRGRKCFTTVEGIPPEFDYEKIMKYWKKWLSCNATIVEEDEGKKVIKLNGDHRNQIQQFLSEEGIAAVD 94 (101)
T ss_dssp CSCCEEEEEEEEETTEEEEEEECCCTTSCTHHHHHHHHHHHTSCCCEEECSTTCEEEEEESCCHHHHHHHHHHHSSSCTT
T ss_pred CCCeEEEEEEeccCCccEEEEecCCCchhHHHHHHHHHHHhcCCeEEecCCCCceEEEEeCcHHHHHHHHHHHcCCCCHH
Confidence 57799999999999999999999998899999999999999999999999998999999999999999999999999999
Q ss_pred CeEEccC
Q 033744 106 RIKIHGF 112 (112)
Q Consensus 106 ~I~ihg~ 112 (112)
+|+||||
T Consensus 95 ~I~vhg~ 101 (101)
T 2xzm_F 95 NITIHGI 101 (101)
T ss_dssp TEEECCC
T ss_pred HEEEcCC
Confidence 9999998
No 4
>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1
Probab=99.92 E-value=6.8e-26 Score=158.29 Aligned_cols=79 Identities=28% Similarity=0.467 Sum_probs=69.6
Q ss_pred CCCCCCceEEEEEEEecCC--eeEEEEecCCC-chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHh
Q 033744 22 LAPGDKGYVHLRVQQRNGK--KCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVK 98 (112)
Q Consensus 22 ~~~~~~~~I~I~~~~R~gr--K~VT~V~GL~~-~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~ 98 (112)
.++...++|+|+++ |+|| |.||+|+||+. ++|+++|||+||++|||||||++ ++|+||||||++|.+||.+
T Consensus 25 ~~p~~~~~V~I~~e-r~gR~GK~VT~V~Gl~~~~~dlk~laK~LKkk~acgGtVk~-----~~IeiQGD~r~~i~~~L~~ 98 (116)
T 1d1r_A 25 VRPKGDGVVRIQRQ-TSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAVKD-----GVIEIQGDKRDLLKSLLEA 98 (116)
T ss_dssp ---CCCCEEEEEEC-CCSSSSCCCEEEECCCSCHHHHHHHHHHHTTSSSSCCBCCS-----SCEEECSCCHHHHHHHHHH
T ss_pred CCCCCCCeEEEEEE-eCCCCCCeEEEEeCCcCchhhHHHHHHHHHHHhcCCcEEcC-----CEEEEeCcHHHHHHHHHHH
Confidence 35667889999999 6665 99999999999 99999999999999999999984 6899999999999999999
Q ss_pred CCCCCCCCe
Q 033744 99 SKIVDKDRI 107 (112)
Q Consensus 99 ~G~~~~~~I 107 (112)
+|| +..+|
T Consensus 99 ~G~-~vk~i 106 (116)
T 1d1r_A 99 KGM-KVKLA 106 (116)
T ss_dssp HTC-EECCC
T ss_pred cCC-Cccee
Confidence 998 66554
No 5
>1gxu_A Hydrogenase maturation protein HYPF; phosphatase, acylphosphatases, hydrogenase maturations, fibril formation, zinc-finger, complete proteome; 1.27A {Escherichia coli} SCOP: d.58.10.1 PDB: 1gxt_A
Probab=94.79 E-value=0.18 Score=32.64 Aligned_cols=55 Identities=18% Similarity=0.313 Sum_probs=46.8
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhCCC
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKI 101 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~G~ 101 (112)
.|+|.-.++-+...+..+.++++-.|.|.-.+++ -+|++||+. +.+.++|...+-
T Consensus 12 ~V~G~VQGVGFR~~v~~~A~~lgL~G~VrN~~dG-Vei~~eG~~-~~f~~~l~~~~P 66 (91)
T 1gxu_A 12 RIRGKVQGVGFRPFVWQLAQQLNLHGDVCNDGDG-VEVRLREDP-EVFLVQLYQHCP 66 (91)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHTCCEEEEECSSS-EEEEESSCC-HHHHHHHHHTCC
T ss_pred EEEEeeCCcCHHHHHHHHHHHcCCeEEEEECCCc-EEEEEEECH-HHHHHHHhhCCC
Confidence 4788877888899999999999999999865555 789999999 888999987663
No 6
>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} SCOP: d.58.10.1
Probab=93.54 E-value=0.36 Score=31.74 Aligned_cols=57 Identities=16% Similarity=0.110 Sum_probs=45.5
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCch--hHHHHHHHHhCCC
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDH--RKNVMIFLVKSKI 101 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~--~~~i~~~L~~~G~ 101 (112)
.|+|.-.++-+...+..+.++++-.|.|.-.+++.-+|++||+. .+...++|..+|-
T Consensus 16 ~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~l~~f~~~l~~~gP 74 (102)
T 1urr_A 16 EIFGRVQGVFFRKHTSHEAKRLGVRGWCMNTRDGTVKGQLEAPMMNLMEMKHWLENNRI 74 (102)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHHCCS
T ss_pred EEEEeECCcChhHHHHHHHHHhCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHHhcCC
Confidence 47888778889999999999999999998655555689999985 5667777766663
No 7
>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A
Probab=92.87 E-value=0.47 Score=30.94 Aligned_cols=57 Identities=19% Similarity=0.083 Sum_probs=45.4
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCch--hHHHHHHHHhCCC
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDH--RKNVMIFLVKSKI 101 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~--~~~i~~~L~~~G~ 101 (112)
+|+|.-.++-+...+..+.++++-.|.|.-.+++.-+|++||+. .+.+.++|...|-
T Consensus 13 ~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~v~~f~~~l~~~~p 71 (99)
T 2vh7_A 13 EIFGKVQGVFFRKHTQAEGKKLGLVGWVQNTDRGTVQGQLQGPISKVRHMQEWLETRGS 71 (99)
T ss_dssp EEEEECSSSCHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHHHTCS
T ss_pred EEEEeeCCcChHHHHHHHHHHcCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHHhcCC
Confidence 47888778889999999999999999998655554689999985 4667777766653
No 8
>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: d.58.10.1
Probab=92.54 E-value=0.59 Score=29.81 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=44.1
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCch--hHHHHHHHHhCC
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDH--RKNVMIFLVKSK 100 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~--~~~i~~~L~~~G 100 (112)
.|+|.-.++-+...+..+.++++-.|.|.-.+++.-+|++||+. .+...++|. +|
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~-~g 63 (88)
T 1ulr_A 7 LVKGRVQGVGYRAFAQKKALELGLSGYAENLPDGRVEVVAEGPKEALELFLHHLK-QG 63 (88)
T ss_dssp EEEEECSSSSHHHHHHHHHHHTTCEEEEEECTTSCEEEEEESCHHHHHHHHHHHH-HC
T ss_pred EEEEeECCcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHH-hC
Confidence 57888778888999999999999999998655555789999985 556666666 45
No 9
>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A
Probab=91.36 E-value=0.91 Score=29.05 Aligned_cols=54 Identities=15% Similarity=0.096 Sum_probs=42.1
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCch--hHHHHHHHHh
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDH--RKNVMIFLVK 98 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~--~~~i~~~L~~ 98 (112)
.|+|.-.++-+...+..+.++++-.|.|.-.+++.-+|++||+. .+...++|..
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~~ 62 (91)
T 2fhm_A 7 IVDGRVQGVGFRYFVQMEADKRKLAGWVKNRDDGRVEILAEGPENALQSFVEAVKN 62 (91)
T ss_dssp EEEEECCSSCHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHT
T ss_pred EEEEeECCcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHHh
Confidence 57888778888999999999999999998665555789999985 3445555543
No 10
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=91.33 E-value=0.23 Score=29.38 Aligned_cols=44 Identities=27% Similarity=0.329 Sum_probs=35.6
Q ss_pred ecCCeeEEEEecCCC-----chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCc
Q 033744 37 RNGKKCLTTVQGLKE-----DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGD 87 (112)
Q Consensus 37 R~grK~VT~V~GL~~-----~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD 87 (112)
|-|+| |++.++.+ .=+++-++|.|.+.++..|++. +....|+|.
T Consensus 4 ~eG~k--Tvi~Nf~~Ia~~L~R~p~hv~ky~~~ELGt~g~id-----~~rlii~G~ 52 (52)
T 1k8b_A 4 IEGNR--TIIRNFRELAKAVNRDEEFFAKYLLKETGSAGNLE-----GGRLILQRR 52 (52)
T ss_dssp EETTE--EEECCHHHHHHHHHTCHHHHHHHHHHHHSSEEEEE-----TTEEEEECC
T ss_pred EEcCe--EEEECHHHHHHHHCCCHHHHHHHHHHHhCCCeeec-----CCEEEEeCC
Confidence 55777 99999986 2268999999999999999995 356788873
No 11
>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} SCOP: d.58.10.1 PDB: 1v3z_A 2w4d_A
Probab=90.70 E-value=0.77 Score=29.49 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=41.4
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchh--HHHHHHHH
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHR--KNVMIFLV 97 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~--~~i~~~L~ 97 (112)
.|+|.-.++-+...+..+.++++-.|.|.-.+++.-+|++||+.. +...++|.
T Consensus 9 ~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~ 63 (91)
T 1w2i_A 9 KIYGRVQGVGFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDEERVEALIGWAH 63 (91)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHTT
T ss_pred EEEEEECCcCHHHHHHHHHHHcCCeEEEEECCCCCEEEEEEeCHHHHHHHHHHHH
Confidence 588887788889999999999999999986555557899999853 44444444
No 12
>2lxf_A Uncharacterized protein; beaver fever, giardiasis, seattle structural genomics center infectious disease, ssgcid, structural genomics; NMR {Giardia lamblia}
Probab=90.57 E-value=0.73 Score=31.54 Aligned_cols=54 Identities=19% Similarity=0.161 Sum_probs=41.8
Q ss_pred EecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCc--hhHHHHHHHHhCC
Q 033744 46 VQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGD--HRKNVMIFLVKSK 100 (112)
Q Consensus 46 V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD--~~~~i~~~L~~~G 100 (112)
|+|.-.++-+...+..+.++++-.|.|+-.+++.-+|++||+ ..+.+.++|. +|
T Consensus 40 V~G~VQGVGFR~~v~~~A~~lgL~G~VrN~~dG~Vei~~eG~~~~v~~f~~~l~-~g 95 (121)
T 2lxf_A 40 VTGKVQGVFFRKYTKKEADALSLVGYVTNNEDGSVSGVVQGPKEQVDAFVKYLH-KG 95 (121)
T ss_dssp EEECTTCCCCHHHHHHHHHHHTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHH-HC
T ss_pred EEEeeCCcCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHH-hC
Confidence 778877788888899999999999999866655578999997 3445555554 35
No 13
>3trg_A Acylphosphatase; fatty acid and phospholipid metabolism, hydrolase; 1.60A {Coxiella burnetii}
Probab=90.05 E-value=1.6 Score=28.50 Aligned_cols=54 Identities=20% Similarity=0.187 Sum_probs=42.0
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhC
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKS 99 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~ 99 (112)
.|+|.-.++-+...+..+.++++-.|.|.-.+++.-+|++||+ .+.|.+|+...
T Consensus 17 ~V~G~VQGVGFR~~v~~~A~~lgL~G~VrN~~dG~Vei~~eG~-~~~l~~f~~~l 70 (98)
T 3trg_A 17 TVSGKVQGVFFRESVRKKAEELQLTGWVKNLSHGDVELVACGE-RDSIMILTEWL 70 (98)
T ss_dssp EEEEECSSSCHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEE-HHHHHHHHHHT
T ss_pred EEEEeECCCCccHHHHHHHHHcCCeEEEEECCCCEEEEEEEEC-HHHHHHHHHHH
Confidence 5778777888889999999999999999865555578999998 34455555544
No 14
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=90.04 E-value=0.4 Score=34.08 Aligned_cols=54 Identities=26% Similarity=0.399 Sum_probs=41.8
Q ss_pred ecCCeeEEEEecCCC-----chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHH
Q 033744 37 RNGKKCLTTVQGLKE-----DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLV 97 (112)
Q Consensus 37 R~grK~VT~V~GL~~-----~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~ 97 (112)
+-|+| |++.++.+ .=+++-+.|.|...+|+.|++. ++...|+|.+..+-.+-+.
T Consensus 39 ~eGkK--Tvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id-----~~rlii~G~~~~~~i~~~L 97 (148)
T 2d74_B 39 IEGNK--TIIENFKDIADALNRDPQHLLKFLLREIATAGTLE-----GRRVVLQGRFTPYLIANKL 97 (148)
T ss_dssp EETTE--EEESCHHHHHHHHTCCSHHHHHHHHHHSCCCEEEE-----TTEEEESSCCCHHHHHHHH
T ss_pred EecCe--EEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec-----CCEEEEEeeeCHHHHHHHH
Confidence 44655 99999876 2258889999999999999995 4679999997766555444
No 15
>2gv1_A Probable acylphosphatase; globular alpha-helix/beta-sheet protein, hydrolase; NMR {Escherichia coli}
Probab=89.29 E-value=1.1 Score=28.79 Aligned_cols=56 Identities=16% Similarity=0.125 Sum_probs=41.5
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCch--hHHHHHHHHhCC
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDH--RKNVMIFLVKSK 100 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~--~~~i~~~L~~~G 100 (112)
.|+|.-.++-+...+..+.++++-.|.|.-.+++.-+|++||+. .+.+.++|...|
T Consensus 9 ~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~~~g 66 (92)
T 2gv1_A 9 WVYGRVQGVGFRYTTQYEAKRLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWLKSGG 66 (92)
T ss_dssp EEEEECTTTTCCSHHHHHHHHHTCCCEEEECSSSCEEEEECSCHHHHHHHHHHHHHTS
T ss_pred EEEEeeCCcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHhhccC
Confidence 47777777777777888888999999998655554689999985 456666663445
No 16
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=88.55 E-value=0.2 Score=35.26 Aligned_cols=53 Identities=28% Similarity=0.334 Sum_probs=41.2
Q ss_pred ecCCeeEEEEecCCC-----chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHH
Q 033744 37 RNGKKCLTTVQGLKE-----DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFL 96 (112)
Q Consensus 37 R~grK~VT~V~GL~~-----~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L 96 (112)
+-|+| |++.++.+ .=+++-+.|.|...+|+.|++. ++...|+|.|..+-.+-+
T Consensus 37 ~eG~k--Tvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id-----~~rlii~G~~~~~~i~~~ 94 (138)
T 1nee_A 37 IQGNR--TFIQNFREVADALNRDPQHLLKFLLRELGTAGNLE-----GGRAILQGKFTHFLINER 94 (138)
T ss_dssp EETTE--EEESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCCB-----TTTEEEESSCSSSHHHHH
T ss_pred EECCc--EEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec-----CCEEEEEeeeCHHHHHHH
Confidence 44776 99999986 2368999999999999999995 456899999765544433
No 17
>2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus solfataricus} PDB: 2bje_A 1y9o_A
Probab=86.74 E-value=2.3 Score=27.77 Aligned_cols=53 Identities=15% Similarity=0.140 Sum_probs=41.6
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCch--hHHHHHHHH
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDH--RKNVMIFLV 97 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~--~~~i~~~L~ 97 (112)
.|+|.-.++-+...+..+.++++-.|.|.-.+++.-+|++||+. .+.+.++|.
T Consensus 19 ~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~ 73 (101)
T 2bjd_A 19 RVYGLVQGVGFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYEEALSKLLERIK 73 (101)
T ss_dssp EEEEECSSSSHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHT
T ss_pred EEEEeECCcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHH
Confidence 58888888889999999999999999998655555789999985 344444443
No 18
>1aps_A Acylphosphatase; hydrolase(acting on acid anhydrides); NMR {Equus caballus} SCOP: d.58.10.1
Probab=86.71 E-value=0.35 Score=31.53 Aligned_cols=53 Identities=19% Similarity=0.092 Sum_probs=39.1
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHh
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVK 98 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~ 98 (112)
.|+|.-.++-+...+..+.++++-.|.|.-.+++.-+|++||+.. .|.+|+..
T Consensus 12 ~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~-~l~~f~~~ 64 (98)
T 1aps_A 12 EVFGRVQGVCFRMYAEDEARKIGVVGWVKNTSKGTVTGQVQGPEE-KVNSMKSW 64 (98)
T ss_dssp EEECTTSCCCCTTHHHHHHHHHTCEEEEECCTTCEEEEEEEEEHH-HHHHHHHS
T ss_pred EEEEEECCcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHH-HHHHHHHH
Confidence 478887777777888888899999999975444436899999853 35555543
No 19
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=80.82 E-value=6.1 Score=27.68 Aligned_cols=62 Identities=24% Similarity=0.240 Sum_probs=47.4
Q ss_pred cCCeeEEEEecCCC--chhHHHHHHHHhhHhccCcEEEecC-CCC-eEEEEcCchhHHHHHHHHhC
Q 033744 38 NGKKCLTTVQGLKE--DFGYQKILKDLKKEFCCNGNVVNDK-VLG-KVIQLQGDHRKNVMIFLVKS 99 (112)
Q Consensus 38 ~grK~VT~V~GL~~--~~dlk~lak~lKk~~acggsv~~~p-~~g-~~I~lQGD~~~~i~~~L~~~ 99 (112)
.|+..+-+|+|.+. .-++.+-|..|++.|.-+.+..--- +.| ..|.+.||-.+.+.+.|.+.
T Consensus 39 ~gn~l~i~itgvpeqvrkelakeaerl~~efni~v~y~imgsgsgvm~i~f~gddlea~ekalkem 104 (170)
T 4hhu_A 39 SGNRLVIVITGVPEQVRKELAKEAERLKAEFNINVQYQIMGSGSGVMVIVFEGDDLEALEKALKEM 104 (170)
T ss_dssp ETTEEEEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEEECSCHHHHHHHHHHH
T ss_pred eCCEEEEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEEeCCceEEEEEEecCcHHHHHHHHHHH
Confidence 58888999999998 5567777888999998877664221 223 57999999999888888763
No 20
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.25 E-value=2.3 Score=30.42 Aligned_cols=66 Identities=12% Similarity=0.079 Sum_probs=45.0
Q ss_pred eEEEEEEEecCCeeEEEEecCCC-----chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHh
Q 033744 29 YVHLRVQQRNGKKCLTTVQGLKE-----DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVK 98 (112)
Q Consensus 29 ~I~I~~~~R~grK~VT~V~GL~~-----~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~ 98 (112)
++.+.++= +|+=.-|++.++.+ .=+++-+.|.|...+|+.|++.+ .++...|+|.|..+-.+-+..
T Consensus 27 ~~~v~~eG-~gnG~KTvi~Nf~dIak~L~R~p~hv~ky~~~ELGt~g~id~---~~~rlii~G~~~~~~i~~~L~ 97 (157)
T 2e9h_A 27 RLIAKVEG-KGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDV---KNDRYIVNGSHEANKLQDMLD 97 (157)
T ss_dssp CCCEEECS-SSSSCEEEETTHHHHHHHTTSCTHHHHHHHHHHHTCCEEEET---TTTEEEEEBCCCHHHHHHHHH
T ss_pred CCeEEEec-cCCccEEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeecC---CCCEEEEEeeeCHHHHHHHHH
Confidence 34444442 22224588888876 22588899999999999999952 145799999987665554443
No 21
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=68.12 E-value=12 Score=32.67 Aligned_cols=56 Identities=13% Similarity=0.299 Sum_probs=45.1
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCch--hHHHHHHHHhCCC
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDH--RKNVMIFLVKSKI 101 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~--~~~i~~~L~~~G~ 101 (112)
.|+|.-.++-+...+..+.++++-.|.|.-.+++ -+|++||+. .+...++|..+|-
T Consensus 15 ~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG-Vei~~eG~~~~l~~f~~~L~~~~P 72 (761)
T 3vth_A 15 NIFGIVQGVGFRPFVFNIAQKYNLKGIVYNNSSG-LYIEVEGEEKDIEAFIREIKENPP 72 (761)
T ss_dssp EEEEECSSSSHHHHHHHHHHHTTCEEEEEEETTE-EEEEEEECHHHHHHHHHHHHHSCC
T ss_pred EEEEEeCCcCcHHHHHHHHHHcCCeEEEEECCCe-EEEEEEECHHHHHHHHHHHhcCCC
Confidence 5888888889999999999999999999865554 789999984 4566666766653
No 22
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=63.11 E-value=5.3 Score=28.86 Aligned_cols=66 Identities=12% Similarity=0.089 Sum_probs=43.6
Q ss_pred eEEEEEEEecCCeeEEEEecCCC-----chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHh
Q 033744 29 YVHLRVQQRNGKKCLTTVQGLKE-----DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVK 98 (112)
Q Consensus 29 ~I~I~~~~R~grK~VT~V~GL~~-----~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~ 98 (112)
++.+.++=+ |+=.-|++.+|.+ .=+++-+.|.|...+|+.|++.+ .++...|+|.|...-.+-+..
T Consensus 20 ~~~v~~EG~-gnG~KTvi~Nf~dIak~L~R~p~hv~kyf~~ELGt~g~id~---~~~rliinG~~~~~~i~~~L~ 90 (170)
T 2g2k_A 20 RLIAKVEGK-GNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDV---KNDRYIVNGSHEANKLQDMLD 90 (170)
T ss_dssp CCCCEEESC-TTTCEEECSSHHHHHHHHSSCCTTTHHHHHHHTTCCCEECT---TTCCEEEEBCCCHHHHHHHHH
T ss_pred CCeEEEecc-CCccEEEEEcHHHHHHHhCCCHHHHHHHHHHHhCCceeecC---CCCEEEEEeeeCHHHHHHHHH
Confidence 445555532 2224578888765 12467788999999999999942 134689999987665554443
No 23
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=62.95 E-value=0.25 Score=34.76 Aligned_cols=54 Identities=24% Similarity=0.279 Sum_probs=41.0
Q ss_pred EecCCeeEEEEecCCC---c--hhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHH
Q 033744 36 QRNGKKCLTTVQGLKE---D--FGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIF 95 (112)
Q Consensus 36 ~R~grK~VT~V~GL~~---~--~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~ 95 (112)
++-|+| |++.++.+ . =+++-+.|.|...+|+.|++.+ ++...|+|.|..+-.+-
T Consensus 36 ~~eG~k--Tvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id~----~~rlii~G~~~~~~i~~ 94 (139)
T 3cw2_K 36 LNIGNT--TIIRNFAEYCDRIRREDKICMKYLLKELAAPGNVDD----KGELVIQGKFSSQVINT 94 (139)
T ss_dssp CCCSSS--CCCSCSSSTTTTTSSCCTTTHHHHSCCSSCCCCCSS----SCCCTTTCSCCSCCSCS
T ss_pred EEECCe--EEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceEECC----CCeEEEEeeeCHHHHHH
Confidence 456776 99999987 2 2588899999999999999953 45678899876554433
No 24
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Probab=56.16 E-value=6.8 Score=25.61 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.1
Q ss_pred hHHHHHHHHhCCCCCCCCeEEccC
Q 033744 89 RKNVMIFLVKSKIVDKDRIKIHGF 112 (112)
Q Consensus 89 ~~~i~~~L~~~G~~~~~~I~ihg~ 112 (112)
.+.|+++|.+.|+ +++.|.+.|+
T Consensus 63 A~aV~~~L~~~Gi-~~~ri~~~g~ 85 (118)
T 2hqs_H 63 ANAVKMYLQGKGV-SADQISIVSY 85 (118)
T ss_dssp HHHHHHHHHHTTC-CGGGEEEEEC
T ss_pred HHHHHHHHHHcCC-CHHHEEEEEe
Confidence 5689999999998 8888998875
No 25
>2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} SCOP: d.79.7.1
Probab=50.69 E-value=9.2 Score=25.66 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=20.0
Q ss_pred hHHHHHHHHhCCCCCCCCeEEccC
Q 033744 89 RKNVMIFLVKSKIVDKDRIKIHGF 112 (112)
Q Consensus 89 ~~~i~~~L~~~G~~~~~~I~ihg~ 112 (112)
.+.|+++|.+.|+ +++.|.+.|+
T Consensus 87 A~aV~~~L~~~Gi-~~~ri~~~g~ 109 (134)
T 2aiz_P 87 ADAVKGYLAGKGV-DAGKLGTVSY 109 (134)
T ss_dssp HHHHHHHHHHTTC-CGGGEEEEEC
T ss_pred HHHHHHHHHHcCC-CHHHEEEEEE
Confidence 5779999999999 8889998875
No 26
>3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* 3imp_B
Probab=48.18 E-value=11 Score=25.33 Aligned_cols=24 Identities=13% Similarity=0.378 Sum_probs=20.3
Q ss_pred hhHHHHHHHHhCCCCCCCCeEEccC
Q 033744 88 HRKNVMIFLVKSKIVDKDRIKIHGF 112 (112)
Q Consensus 88 ~~~~i~~~L~~~G~~~~~~I~ihg~ 112 (112)
-.+.|+++|.+.|+ +++.|.+.|+
T Consensus 65 RA~aV~~~L~~~Gv-~~~ri~~~g~ 88 (138)
T 3cyp_B 65 RAYRVMKVLIQYGV-NPNQLSFSSY 88 (138)
T ss_dssp HHHHHHHHHHHTTC-CGGGEEEEEC
T ss_pred HHHHHHHHHHHcCC-CHHHEEEEEE
Confidence 44679999999999 8888998875
No 27
>2kgw_A Outer membrane protein A; OMPA-L membrane, transmembrane; NMR {Mycobacterium tuberculosis} PDB: 2lca_A 2lbt_A
Probab=43.80 E-value=11 Score=24.89 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=20.2
Q ss_pred hhHHHHHHHHhCCCCCCCCeEEccC
Q 033744 88 HRKNVMIFLVKSKIVDKDRIKIHGF 112 (112)
Q Consensus 88 ~~~~i~~~L~~~G~~~~~~I~ihg~ 112 (112)
-.+.|+++|.+.|+ +.+.|.+.|+
T Consensus 80 RA~aV~~~L~~~Gi-~~~ri~~~g~ 103 (129)
T 2kgw_A 80 RAKIVADYLVARGV-AGDHIATVGL 103 (129)
T ss_dssp HHHHHHHHHHHHTC-CGGGEEEEEC
T ss_pred HHHHHHHHHHHcCC-CHHHEEEEEE
Confidence 35689999999998 8888998875
No 28
>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila}
Probab=42.98 E-value=21 Score=24.81 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=33.5
Q ss_pred HHHHHHHHhhHhccCcEEEecCCC-C---eEEEEcCchhHHHHHHHHhCCCCCCCCeEEccC
Q 033744 55 YQKILKDLKKEFCCNGNVVNDKVL-G---KVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112 (112)
Q Consensus 55 lk~lak~lKk~~acggsv~~~p~~-g---~~I~lQGD~~~~i~~~L~~~G~~~~~~I~ihg~ 112 (112)
|.+++..|++.=...-.|.-+.+. | ....|.-.-.+.|+++|.+.|+ +++.|.+.|+
T Consensus 73 L~~la~~l~~~~~~~i~I~GhTD~~G~~~~N~~LS~~RA~aV~~~L~~~Gv-~~~ri~~~g~ 133 (169)
T 3ldt_A 73 LNNVIRLLNFYPQSTIYVAGFTDNVGSRSHKRKLSQAQAETMMTFLWANGI-AAKRLKAEGY 133 (169)
T ss_dssp HHHHHHHHTTCTTSCEEEEEECTTSCCC--CHHHHHHHHHHHHHHHHHTTC-CTTTEEECCT
T ss_pred HHHHHHHHHhCCCCeEEEEeEeCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-CHHHEEEEEE
Confidence 666777776532223333322211 1 1122333345779999999998 9999999875
No 29
>4erh_A Outer membrane protein A; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.52A {Salmonella enterica subsp}
Probab=42.26 E-value=11 Score=25.31 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=21.3
Q ss_pred CchhHHHHHHHHhCCCCCCCCeEEccC
Q 033744 86 GDHRKNVMIFLVKSKIVDKDRIKIHGF 112 (112)
Q Consensus 86 GD~~~~i~~~L~~~G~~~~~~I~ihg~ 112 (112)
-.-.+.|+++|.+.|+ +.+.|.+.|+
T Consensus 78 ~~RA~aV~~~L~~~Gv-~~~ri~~~g~ 103 (148)
T 4erh_A 78 EKRAQSVVDYLISKGI-PSDKISARGM 103 (148)
T ss_dssp HHHHHHHHHHHHTTTC-CGGGEEEEEE
T ss_pred HHHHHHHHHHHHHcCC-CHHHEEEEEE
Confidence 3445889999999998 8888988774
No 30
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=41.34 E-value=66 Score=20.38 Aligned_cols=73 Identities=15% Similarity=0.306 Sum_probs=42.0
Q ss_pred EEEEEEEecCCeeEEEEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchh-------HHHHHHHHhCCCC
Q 033744 30 VHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHR-------KNVMIFLVKSKIV 102 (112)
Q Consensus 30 I~I~~~~R~grK~VT~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~-------~~i~~~L~~~G~~ 102 (112)
|.|.++ |.| ..+.+=--...+-+++..+.+|.|.++-.|.-. -.|.+....- +-|+.+|.+.||
T Consensus 8 itikiq-rdg-qeieidirvstgkeleralqelekalaragarn------vqitisaendeqakelleliarllqklgy- 78 (96)
T 2jvf_A 8 ITIKIQ-RDG-QEIEIDIRVSTGKELERALQELEKALARAGARN------VQITISAENDEQAKELLELIARLLQKLGY- 78 (96)
T ss_dssp EEEEEE-ETT-EEEEEEEECCSSSHHHHHHHHHHHHHHHHTCSE------EEEEEECSSHHHHHHHHHHHHHHHHHHTC-
T ss_pred EEEEEe-eCC-eEEEEEEEEcccHHHHHHHHHHHHHHHhccccc------eEEEEEecChHHHHHHHHHHHHHHHHhCC-
Confidence 444433 445 344333334446677777777777777666532 3455554433 334556677799
Q ss_pred CCCCeEEcc
Q 033744 103 DKDRIKIHG 111 (112)
Q Consensus 103 ~~~~I~ihg 111 (112)
+.-++.+.|
T Consensus 79 kdinvrvng 87 (96)
T 2jvf_A 79 KDINVRVNG 87 (96)
T ss_dssp SEEEEEEET
T ss_pred CceEEEEcC
Confidence 666777766
No 31
>3oon_A Outer membrane protein (TPN50); protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; 1.79A {Borrelia burgdorferi}
Probab=40.61 E-value=17 Score=23.55 Aligned_cols=58 Identities=24% Similarity=0.268 Sum_probs=33.0
Q ss_pred hHHHHHHHHhhHhccCcEEEecCCC-C---eEEEEcCchhHHHHHHHHhCCCCC-CCCeEEccC
Q 033744 54 GYQKILKDLKKEFCCNGNVVNDKVL-G---KVIQLQGDHRKNVMIFLVKSKIVD-KDRIKIHGF 112 (112)
Q Consensus 54 dlk~lak~lKk~~acggsv~~~p~~-g---~~I~lQGD~~~~i~~~L~~~G~~~-~~~I~ihg~ 112 (112)
.|++++..|+..=...-.|.-+.+. | ....|.-.-.+.|+++|.+.|+ + ++.|.+.|+
T Consensus 35 ~L~~~a~~l~~~~~~~i~I~GhtD~~g~~~~N~~LS~~RA~aV~~~L~~~Gv-~~~~ri~~~g~ 97 (123)
T 3oon_A 35 KIDLIAKLLEKFKKNNILIEGHTEQFGLEEEMHELSEKRARAIGNYLIKMKV-KDKDQILFKGW 97 (123)
T ss_dssp HHHHHHHHHHHSCSCCEEEEECCCSCCCHHHHHHHHHHHHHHHHHHHHHTTS-SCGGGEEEEEC
T ss_pred HHHHHHHHHHHCCCceEEEEEEeCCCCChHHHHHHHHHHHHHHHHHHHHcCC-CchHeEEEEEE
Confidence 4777888887532222333221111 1 0111112233789999999999 6 888988775
No 32
>1r1m_A Outer membrane protein class 4; 1.90A {Neisseria meningitidis} SCOP: d.79.7.1
Probab=39.68 E-value=17 Score=25.35 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=20.1
Q ss_pred hhHHHHHHHHhCCCCCCCCeEEccC
Q 033744 88 HRKNVMIFLVKSKIVDKDRIKIHGF 112 (112)
Q Consensus 88 ~~~~i~~~L~~~G~~~~~~I~ihg~ 112 (112)
-.+.|+++|.+.|+ +++.|.+.|+
T Consensus 71 RA~aV~~~L~~~Gi-~~~ri~~~G~ 94 (164)
T 1r1m_A 71 RAYVVANNLVSNGV-PVSRISAVGL 94 (164)
T ss_dssp HHHHHHHHHHHTTC-CGGGEEEEEC
T ss_pred HHHHHHHHHHHcCC-CHHHEEEEEE
Confidence 34579999999998 8888998875
No 33
>3hyi_A Protein DUF199/WHIA; laglidadg, homing endonuclease, helix-turn-helix, HTH, trans regulator; 2.34A {Thermotoga maritima} PDB: 3hyj_A
Probab=37.27 E-value=1.3e+02 Score=23.14 Aligned_cols=59 Identities=15% Similarity=0.035 Sum_probs=39.3
Q ss_pred ecCCC-c-hhHHHHHHHHhhHhccCcEEEecCCCCe--EEEEcCc-hhHHHHHHH-HhCCCCCCCCe
Q 033744 47 QGLKE-D-FGYQKILKDLKKEFCCNGNVVNDKVLGK--VIQLQGD-HRKNVMIFL-VKSKIVDKDRI 107 (112)
Q Consensus 47 ~GL~~-~-~dlk~lak~lKk~~acggsv~~~p~~g~--~I~lQGD-~~~~i~~~L-~~~G~~~~~~I 107 (112)
.|++. - -+.....-.|+-.|-++|||. +|+.+. ||...+. +.+.|.++| ..-|+ +...+
T Consensus 98 ~~i~~~i~~~~~~~~A~lRGaFLa~GSv~-dP~~~YHLEi~~~~~e~a~~l~~ll~~~~~l-~ak~~ 162 (295)
T 3hyi_A 98 SFMVIEPFFDVALFVSFLRGLFLSGGSMT-NPRYHYHLEINLFEEETLALTRKSLKDFFNI-NAGII 162 (295)
T ss_dssp GGGSCCTTSSHHHHHHHHHHHHHHHEEEC-CTTTCCCEEEEESCHHHHHHHHHHHHHHHCC-CCEEE
T ss_pred ccCcHHHhcChHHHHHHHHHHHhcCeecC-CCCCceeEEEeeCcHHHHHHHHHHHHHhcCC-CceEE
Confidence 35554 1 245556679999999999996 787653 4544443 677788888 66687 54433
No 34
>3s06_A Motility protein B; peptidoglycan binding, flagellar rotation, chemotaxis, bacte flagellar motor, membrane, motor protein; 1.80A {Helicobacter pylori} PDB: 3s03_A 3s0h_A 3s02_A
Probab=36.99 E-value=16 Score=25.14 Aligned_cols=25 Identities=12% Similarity=0.392 Sum_probs=20.8
Q ss_pred chhHHHHHHHHhCCCCCCCCeEEccC
Q 033744 87 DHRKNVMIFLVKSKIVDKDRIKIHGF 112 (112)
Q Consensus 87 D~~~~i~~~L~~~G~~~~~~I~ihg~ 112 (112)
.-.+.|+++|.+.|+ +++.|.+.|+
T Consensus 92 ~RA~aV~~~L~~~Gv-~~~ri~~~g~ 116 (166)
T 3s06_A 92 NRAYRVMKVLIQYGV-NPNQLSFSSY 116 (166)
T ss_dssp HHHHHHHHHHHHTTC-CGGGEEEEEE
T ss_pred HHHHHHHHHHHHcCC-ChHhEEEEEE
Confidence 345789999999998 8888988874
No 35
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=36.58 E-value=51 Score=28.61 Aligned_cols=55 Identities=24% Similarity=0.297 Sum_probs=42.0
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCch--hHHHHHHHHhC
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDH--RKNVMIFLVKS 99 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~--~~~i~~~L~~~ 99 (112)
.|+|+-.++-+.-++-.|.++++=.|.|.-+-+.|-+|++||+. .+...+.|..+
T Consensus 7 ~v~G~VQGVGFRPfv~~lA~~~~l~G~V~N~~~~gV~i~~~g~~~~~~~F~~~l~~~ 63 (772)
T 4g9i_A 7 HVQGIVQAVGFRPFVYRIAHEHNLRGYVKNLGDAGVEIVVEGREEDIEAFIEDLYKK 63 (772)
T ss_dssp EECSSTTTSSCHHHHHHHHHHTTCCCBCCCCSTTCEEEECCSCSTTHHHHHHHHHHS
T ss_pred EEEEEEeCCCccHHHHHHHHHcCCeEEEEECCCCeEEEEEEECHHHHHHHHHHHhhC
Confidence 57898888888889999999999999996322357789999973 44555555554
No 36
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=36.04 E-value=62 Score=20.18 Aligned_cols=22 Identities=27% Similarity=0.232 Sum_probs=18.4
Q ss_pred eEEEEcCc--hhHHHHHHHHhCCC
Q 033744 80 KVIQLQGD--HRKNVMIFLVKSKI 101 (112)
Q Consensus 80 ~~I~lQGD--~~~~i~~~L~~~G~ 101 (112)
..+++.|+ ..++..++|.+.|+
T Consensus 69 L~v~l~G~~~~~~~ai~~L~~~~v 92 (100)
T 2qsw_A 69 LYIQLLGEEQNILAAIEGLRKLRV 92 (100)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTC
T ss_pred EEEEEECCHHHHHHHHHHHHHcCC
Confidence 47888996 56788999999987
No 37
>1in0_A YAJQ protein, HI1034; alpha and beta sandwich, structural genomics, structure 2 function project, S2F, unknown function; 2.14A {Haemophilus influenzae} SCOP: d.58.49.1 d.58.49.1
Probab=34.84 E-value=37 Score=24.34 Aligned_cols=54 Identities=19% Similarity=0.351 Sum_probs=35.9
Q ss_pred eeEEEEecCCCchhHHHHHHHHhhH-hccCcEEEecCCCCeEEEEcCchhHHH---HHHHHhCC
Q 033744 41 KCLTTVQGLKEDFGYQKILKDLKKE-FCCNGNVVNDKVLGKVIQLQGDHRKNV---MIFLVKSK 100 (112)
Q Consensus 41 K~VT~V~GL~~~~dlk~lak~lKk~-~acggsv~~~p~~g~~I~lQGD~~~~i---~~~L~~~G 100 (112)
..+|+..||+.+ ..+++.|.+|-. +=.-+++. |++|-|.|-.|+.+ ..+|.+..
T Consensus 94 q~~~lk~GI~~e-~AKkIvK~IKdsklKVqa~IQ-----Gd~vRVtgKkrDDLQ~viallk~~d 151 (163)
T 1in0_A 94 KEIKLKQGIETE-MAKKITKLVKDSKIKVQTQIQ-----GEQVRVTGKSRDDLQAVIQLVKSAE 151 (163)
T ss_dssp EEEEECCSCCHH-HHHHHHHHHHHHTCSEEEEEE-----TTEEEEEESCHHHHHHHHHHHHHSC
T ss_pred EEEEeecccCHH-HHHHHHHHHHhcCCcceeEec-----CcEEEEecCCHHHHHHHHHHHHhcC
Confidence 467888899863 356666666532 33666675 67888888887766 66677553
No 38
>2k1s_A Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha beta, ME palmitate, transmembrane, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=34.62 E-value=18 Score=24.46 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=19.8
Q ss_pred hhHHHHHHHHhCCCCCCCCeEEccC
Q 033744 88 HRKNVMIFLVKSKIVDKDRIKIHGF 112 (112)
Q Consensus 88 ~~~~i~~~L~~~G~~~~~~I~ihg~ 112 (112)
-.+.|+++|.+.|+ +++.|.+.|+
T Consensus 90 RA~aV~~~L~~~Gv-~~~ri~~~g~ 113 (149)
T 2k1s_A 90 RADSVASALITQGV-DASRIRTQGL 113 (149)
T ss_dssp HHHHHHHHHHHHTC-CGGGEEEEEC
T ss_pred HHHHHHHHHHHcCC-CHHHEEEEEE
Confidence 34578999999998 8888998875
No 39
>2dsm_A Hypothetical protein YQAI; homodimer, domain swapped dimer, inter-domain beta sheet, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.372.1.1
Probab=34.47 E-value=29 Score=21.67 Aligned_cols=32 Identities=16% Similarity=0.193 Sum_probs=24.6
Q ss_pred ccCcEEEecCCCCeEEEEcCc--hhHHHHHHHHhC-CC
Q 033744 67 CCNGNVVNDKVLGKVIQLQGD--HRKNVMIFLVKS-KI 101 (112)
Q Consensus 67 acggsv~~~p~~g~~I~lQGD--~~~~i~~~L~~~-G~ 101 (112)
+||+-|... ...++.-|| +++++.++|.+. |+
T Consensus 24 ~cG~EI~~g---d~yl~f~GeiIl~eNl~~Yl~e~~g~ 58 (72)
T 2dsm_A 24 FYGDEVTPV---DDYVIDGGEIILRENLERYLREQLGF 58 (72)
T ss_dssp TTSSCBCTT---SCEEEETTEEEEHHHHHHHHHHTCCC
T ss_pred ccCCeeecC---CeEEEECCeeehHHHHHHHHHHHhCc
Confidence 788888752 345667666 789999999997 77
No 40
>2y3m_A Emhofq, protein transport protein HOFQ; secretin, DNA uptake, competence; 2.30A {Aggregatibacter actinomycetemcomitans}
Probab=34.24 E-value=64 Score=21.88 Aligned_cols=55 Identities=13% Similarity=0.216 Sum_probs=37.8
Q ss_pred chhHHHHHHHHh----hHhccCcEEEecCCCCeEEEEcCc--hhHHHHHHHHhCCCCCCCCeE
Q 033744 52 DFGYQKILKDLK----KEFCCNGNVVNDKVLGKVIQLQGD--HRKNVMIFLVKSKIVDKDRIK 108 (112)
Q Consensus 52 ~~dlk~lak~lK----k~~acggsv~~~p~~g~~I~lQGD--~~~~i~~~L~~~G~~~~~~I~ 108 (112)
..+.+++++.|+ .-++-+|++.-++..+ .+.|.|. ..+++.++|...=. |..+|.
T Consensus 114 y~~a~~~~~~l~~~~~~l~~~~g~v~~d~~tN-~liv~~~~~~i~~i~~li~~lD~-p~~QV~ 174 (175)
T 2y3m_A 114 FAKASEVMKSLTGGSGSLLSPNGSITFDDRSN-LLLIQDEPRSVRNIKKLIKELDK-PIEQLE 174 (175)
T ss_dssp SSCHHHHHHHHHCSSSCSSCTTCEEEEETTTT-EEEEEECHHHHHHHHHHHHHHCC-------
T ss_pred CCCHHHHHHHHhhCcccccCCCceEEEECCCC-EEEEEcCHHHHHHHHHHHHHhCC-ChhhCc
Confidence 557888999998 6777778888665555 6889887 55788888887665 666554
No 41
>3s0y_A Motility protein B; peptidoglycan binding, flagellar rotation, chemotaxis, bacte flagellar motor, membrane, motor protein; 1.80A {Helicobacter pylori} PDB: 3s0w_A
Probab=33.52 E-value=24 Score=24.92 Aligned_cols=28 Identities=14% Similarity=0.401 Sum_probs=22.1
Q ss_pred EcCchhHHHHHHHHhCCCCCCCCeEEccC
Q 033744 84 LQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112 (112)
Q Consensus 84 lQGD~~~~i~~~L~~~G~~~~~~I~ihg~ 112 (112)
|.-.-...|+++|.+.|+ +++.|.+.||
T Consensus 116 LS~~RA~aV~~~L~~~Gv-~~~ri~~~g~ 143 (193)
T 3s0y_A 116 LAANRAYRVMKVLIQYGV-NPNQLSFSSY 143 (193)
T ss_dssp HHHHHHHHHHHHHHHTTC-CGGGEEEEEC
T ss_pred HHHHHHHHHHHHHHHcCC-CHHHEEEEEE
Confidence 333445679999999998 8888998875
No 42
>3e19_A FEOA; transcriptional regulator, metal-binding, iron uptake, beta- transcription regulator, metal binding protein; HET: GOL; 2.00A {Thermococcus thioreducens}
Probab=32.79 E-value=49 Score=19.54 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=23.8
Q ss_pred eEEEEcCchhHHHHHHHHhCCCCCCCCeEEc
Q 033744 80 KVIQLQGDHRKNVMIFLVKSKIVDKDRIKIH 110 (112)
Q Consensus 80 ~~I~lQGD~~~~i~~~L~~~G~~~~~~I~ih 110 (112)
....+.++ ..+..+|.+.|+.|...|+|.
T Consensus 17 ~I~~i~~~--~~~~~rL~~lGi~~G~~v~v~ 45 (77)
T 3e19_A 17 IVVNILGG--HNARQKLVSMGLTPGATIQVL 45 (77)
T ss_dssp EEEEECSH--HHHHHHHHTTTCSTTCEEEEE
T ss_pred EEEEEECC--HHHHHHHHHCCCCCCCEEEEE
Confidence 35677776 689999999999999888874
No 43
>3td3_A Outer membrane protein OMP38; OMPA-like fold, cell-WALL attachment, peptidoglycan-binding, protein,peptide binding protein; 1.59A {Acinetobacter baumannii} PDB: 3td4_A* 3td5_A*
Probab=30.73 E-value=31 Score=22.24 Aligned_cols=58 Identities=19% Similarity=0.215 Sum_probs=33.5
Q ss_pred hHHHHHHHHhhHhccCcEEEecCCC-C---eEEEEcCchhHHHHHHHHh-CCCCCCCCeEEccC
Q 033744 54 GYQKILKDLKKEFCCNGNVVNDKVL-G---KVIQLQGDHRKNVMIFLVK-SKIVDKDRIKIHGF 112 (112)
Q Consensus 54 dlk~lak~lKk~~acggsv~~~p~~-g---~~I~lQGD~~~~i~~~L~~-~G~~~~~~I~ihg~ 112 (112)
.|..++..|+..=...-.|.-+.+. | ....|.-.-.+.|+++|.+ .|+ +++.|.+.|+
T Consensus 32 ~L~~~a~~l~~~~~~~i~I~GhtD~~g~~~~N~~LS~~RA~aV~~~L~~~~Gi-~~~ri~~~g~ 94 (123)
T 3td3_A 32 EIAKVAEKLSEYPNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEYNV-DASRLSTQGF 94 (123)
T ss_dssp HHHHHHHHHHHSTTCEEEEEECCCSCSCHHHHHHHHHHHHHHHHHHHHHHSCC-CGGGEEEEEC
T ss_pred HHHHHHHHHHhCCCceEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHhhCC-CHHHEEEEEE
Confidence 4778888887543322233321111 1 0111222235889999998 599 8888988775
No 44
>2nlv_A XISI protein-like; XISI-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.30A {Anabaena variabilis} SCOP: d.326.1.1
Probab=28.91 E-value=28 Score=23.39 Aligned_cols=29 Identities=24% Similarity=0.206 Sum_probs=23.2
Q ss_pred eEEEEcCchh-HHHHHHHHhCCCCCCCCeEE
Q 033744 80 KVIQLQGDHR-KNVMIFLVKSKIVDKDRIKI 109 (112)
Q Consensus 80 ~~I~lQGD~~-~~i~~~L~~~G~~~~~~I~i 109 (112)
+-|=||=|.. +.|++-|.+.|+ |++.|..
T Consensus 67 ~KIWIq~d~TE~gIa~eLv~~GV-pk~dIVL 96 (112)
T 2nlv_A 67 GKIWLQQNLTDRNPAEELVMMGV-PREDIVL 96 (112)
T ss_dssp TEEEEEEECSSSCHHHHHHHTTC-CGGGEEE
T ss_pred CeEEEEeCCccccHHHHHHHcCC-CHHHEEE
Confidence 4577777755 469999999999 9999975
No 45
>3khn_A MOTB protein, putative; structural genomics, OMPA-like domain, PSI-2, protein structure initiative; 2.03A {Desulfovibrio vulgaris str}
Probab=28.77 E-value=26 Score=24.29 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=20.7
Q ss_pred chhHHHHHHHHhCCCCCCCCeEEccC
Q 033744 87 DHRKNVMIFLVKSKIVDKDRIKIHGF 112 (112)
Q Consensus 87 D~~~~i~~~L~~~G~~~~~~I~ihg~ 112 (112)
.-...|+++|.+.|+ +++.|.+.|+
T Consensus 111 ~RA~aV~~~L~~~Gv-~~~ri~~~g~ 135 (174)
T 3khn_A 111 LRSVNVLRYFLGAGI-EPARLTATGL 135 (174)
T ss_dssp HHHHHHHHHHHHTTC-CGGGEEEEEE
T ss_pred HHHHHHHHHHHHcCC-CHHHEEEEEE
Confidence 336789999999999 8888988774
No 46
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=28.64 E-value=74 Score=19.99 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=30.1
Q ss_pred HHHHHHHhhHhccCcEEE-----ecCC---CCeEEEEcC---chhHHHHHHHHhCCC
Q 033744 56 QKILKDLKKEFCCNGNVV-----NDKV---LGKVIQLQG---DHRKNVMIFLVKSKI 101 (112)
Q Consensus 56 k~lak~lKk~~acggsv~-----~~p~---~g~~I~lQG---D~~~~i~~~L~~~G~ 101 (112)
+-+...+-++|+...++. ...+ +...+++.| +..++..++|.+.|+
T Consensus 34 ~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~~~v 90 (98)
T 3ced_A 34 EPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQV 90 (98)
T ss_dssp HHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHHCCC
Confidence 445566667777754443 2111 124788899 467889999999987
No 47
>2lx9_A Ferrous iron transport protein A; FEOA; NMR {Escherichia coli}
Probab=28.28 E-value=58 Score=19.93 Aligned_cols=30 Identities=3% Similarity=0.030 Sum_probs=24.4
Q ss_pred EEEEcCchhHHHHHHHHhCCCCCCCCeEEc
Q 033744 81 VIQLQGDHRKNVMIFLVKSKIVDKDRIKIH 110 (112)
Q Consensus 81 ~I~lQGD~~~~i~~~L~~~G~~~~~~I~ih 110 (112)
...|.|+....+...|.+.||.|-..|+|.
T Consensus 11 I~~i~~~~~~~~~rrL~~mGl~pG~~V~Vi 40 (83)
T 2lx9_A 11 ITGFSREISPAYRQKLLSLGMLPGSSFNVV 40 (83)
T ss_dssp EEECCSSSCHHHHHHHHHSSCCSSSEEEEE
T ss_pred EEEEECCCCHHHHHHHHHCCCCCCCEEEEE
Confidence 456777656789999999999999888874
No 48
>3d7q_A XISI protein-like; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.30A {Nostoc punctiforme pcc 73102}
Probab=27.78 E-value=28 Score=23.39 Aligned_cols=29 Identities=28% Similarity=0.378 Sum_probs=23.0
Q ss_pred eEEEEcCchh-HHHHHHHHhCCCCCCCCeEE
Q 033744 80 KVIQLQGDHR-KNVMIFLVKSKIVDKDRIKI 109 (112)
Q Consensus 80 ~~I~lQGD~~-~~i~~~L~~~G~~~~~~I~i 109 (112)
+-|=||=|.. +.|++-|.+.|+ |++.|..
T Consensus 67 ~KIWIq~d~TE~gIa~eLv~~GV-pk~dIVL 96 (112)
T 3d7q_A 67 NKIWIQQNTTEADIALELMEMGI-DKQDIVI 96 (112)
T ss_dssp TEEEEEEECSSCCHHHHHHTTTC-CGGGEEE
T ss_pred CeEEEEeCCccccHHHHHHHcCC-CHHHEEE
Confidence 3577777754 469999999999 9999975
No 49
>2nwv_A XISI protein-like; YP_323822.1, structural genomics, PSI-2, structure initiative, joint center for structural genomics; 1.85A {Anabaena variabilis} SCOP: d.326.1.1
Probab=27.76 E-value=30 Score=23.32 Aligned_cols=29 Identities=14% Similarity=0.269 Sum_probs=23.0
Q ss_pred eEEEEcCchh-HHHHHHHHhCCCCCCCCeEE
Q 033744 80 KVIQLQGDHR-KNVMIFLVKSKIVDKDRIKI 109 (112)
Q Consensus 80 ~~I~lQGD~~-~~i~~~L~~~G~~~~~~I~i 109 (112)
+-|=||=|.. +.|++-|.+.|+ |++.|..
T Consensus 69 ~KIWIq~d~TE~gIa~eLv~~GV-pk~dIVL 98 (114)
T 2nwv_A 69 EKIYIEEDYTEEGIATELMRLGV-TNNDIVL 98 (114)
T ss_dssp TEEEEEEECCSSCHHHHHHHTTC-CGGGEEE
T ss_pred CeEEEEeCCccccHHHHHHHcCC-CHHHEEE
Confidence 3577777754 469999999999 9999875
No 50
>2zvy_A Chemotaxis protein MOTB; 2-layer sandwich, bacterial flagellum, cell inner membrane, cell membrane, flagellar rotation, membrane; 1.75A {Salmonella typhimurium} PDB: 2zvz_A
Probab=26.76 E-value=51 Score=23.20 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=20.1
Q ss_pred chhHHHHHHHHhCCCCCCCCe-EEccC
Q 033744 87 DHRKNVMIFLVKSKIVDKDRI-KIHGF 112 (112)
Q Consensus 87 D~~~~i~~~L~~~G~~~~~~I-~ihg~ 112 (112)
.-...|+++|.+.|+ +++.| .+.||
T Consensus 119 ~RA~aV~~~L~~~Gi-~~~ri~~~~G~ 144 (183)
T 2zvy_A 119 DRANASRRELVAGGL-DNGKVLRVVGM 144 (183)
T ss_dssp HHHHHHHHHHHHTTC-CTTCEEEEEEC
T ss_pred HHHHHHHHHHHHcCC-CHHHhheeEEe
Confidence 345679999999998 88888 78775
No 51
>1zat_A L,D-transpeptidase; L,D-transpeptidation, peptidoglycan, beta-lactam insensitive transpeptidase, antibiotic resistance, transferase; 2.40A {Enterococcus faecium} SCOP: b.160.1.1 d.335.1.1 PDB: 2hkl_A
Probab=26.69 E-value=85 Score=22.66 Aligned_cols=42 Identities=12% Similarity=0.122 Sum_probs=34.7
Q ss_pred EecCCeeEEEEecCCC-chhHHHHHHHHhhHhccCcEEEecCC
Q 033744 36 QRNGKKCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVVNDKV 77 (112)
Q Consensus 36 ~R~grK~VT~V~GL~~-~~dlk~lak~lKk~~acggsv~~~p~ 77 (112)
....++.||+..|-.. .+|.++.+..|...+.-+.++..+|.
T Consensus 70 ~~~~G~~v~V~~g~yGw~id~~~~~~~l~~al~~g~~~~~~p~ 112 (250)
T 1zat_A 70 KSTKRGEVTVPVGTYSWTIQTDSETEALKKAILAGQDFTRSPI 112 (250)
T ss_dssp ECSSSSEEEECCCSSCEEECHHHHHHHHHHHHHHTSCEEECCC
T ss_pred EeCCCCEEEECCCcceeEECHHHHHHHHHHHHHcCCCceeccc
Confidence 3457789999888777 88999999999999999988876553
No 52
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=26.68 E-value=60 Score=20.67 Aligned_cols=44 Identities=14% Similarity=0.316 Sum_probs=28.2
Q ss_pred HHHHHhhHhccCcEEE-----ecCC---CCeEEEEcCc--hhHHHHHHHHhCCC
Q 033744 58 ILKDLKKEFCCNGNVV-----NDKV---LGKVIQLQGD--HRKNVMIFLVKSKI 101 (112)
Q Consensus 58 lak~lKk~~acggsv~-----~~p~---~g~~I~lQGD--~~~~i~~~L~~~G~ 101 (112)
+...+-++|+...++. ...+ +...+++.|| ..++..+||.+.|+
T Consensus 37 iIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v 90 (106)
T 3dhx_A 37 LLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHHV 90 (106)
T ss_dssp HHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHCCC
Confidence 3445555666544443 2111 1247899998 57889999999987
No 53
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=26.20 E-value=88 Score=23.89 Aligned_cols=57 Identities=21% Similarity=0.258 Sum_probs=40.6
Q ss_pred ecCCeeEEEEecCCC-chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhCCCCC
Q 033744 37 RNGKKCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVD 103 (112)
Q Consensus 37 R~grK~VT~V~GL~~-~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~G~~~ 103 (112)
+++.+.|-+|.|=.. .+-+.-+.++|++. .+ +. ..+.+.|-|++-..++|..-|+.|
T Consensus 22 ~~~m~ki~~v~Gtr~~~~~~a~li~~l~~~---~~-~~------~~~~~tG~h~~~~~~~~~~~~i~~ 79 (396)
T 3dzc_A 22 SNAMKKVLIVFGTRPEAIKMAPLVQQLCQD---NR-FV------AKVCVTGQHREMLDQVLELFSITP 79 (396)
T ss_dssp --CCEEEEEEECSHHHHHHHHHHHHHHHHC---TT-EE------EEEEECCSSSHHHHHHHHHTTCCC
T ss_pred hCCCCeEEEEEeccHhHHHHHHHHHHHHhC---CC-Cc------EEEEEecccHHHHHHHHHhcCCCC
Confidence 445578999999877 67788899999874 11 31 357889999876777777778833
No 54
>2l26_A Uncharacterized protein RV0899/MT0922; out membrane protein, membrane protein; NMR {Mycobacterium tuberculosis}
Probab=24.48 E-value=46 Score=25.13 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=19.3
Q ss_pred hhHHHHHHHHhCCCCCCCCeEEccC
Q 033744 88 HRKNVMIFLVKSKIVDKDRIKIHGF 112 (112)
Q Consensus 88 ~~~~i~~~L~~~G~~~~~~I~ihg~ 112 (112)
-.+.|+++|.+.|+ +++.|.+.||
T Consensus 227 RA~aV~~~L~~~Gv-~~~ri~~~G~ 250 (284)
T 2l26_A 227 RAKIVADYLVARGV-AGDHIATVGL 250 (284)
T ss_dssp HHHHHHHHHHHTTC-CTTSEEEEEE
T ss_pred HHHHHHHHHHHcCC-ChHHEEEEEE
Confidence 44568899999998 8888888774
No 55
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=24.45 E-value=1.7e+02 Score=19.76 Aligned_cols=55 Identities=16% Similarity=0.090 Sum_probs=35.1
Q ss_pred cCCeeEEEEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhCCC
Q 033744 38 NGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKI 101 (112)
Q Consensus 38 ~grK~VT~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~G~ 101 (112)
+|++.+..++.-... .....+.|++.|. ++.+.+ -+.++|...+.|.+||.+.|+
T Consensus 116 ~gk~v~~f~t~g~~~--~g~a~~~l~~~l~-~~~~~~------g~~~~~~~~~~i~~Wl~~~~~ 170 (171)
T 4ici_A 116 KGKTVVPFATSGGSS--IGNSATVLKKTYP-DLNWKE------GRLLNRTDEKAIRAWLDVIAV 170 (171)
T ss_dssp TTSEEEEEEECSSCC--SHHHHHHHHHHST-TSEECC------CEECSSCCHHHHHHHHHHHTC
T ss_pred CcCEEEEEEecCCCC--cchHHHHHHHHcC-CCeecc------CeEecCCCHHHHHHHHHHhCC
Confidence 455555555533222 2345666776664 666642 368888888889999998775
No 56
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=22.11 E-value=57 Score=17.86 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=16.7
Q ss_pred chhHHHHHHHHhhHhccCcE
Q 033744 52 DFGYQKILKDLKKEFCCNGN 71 (112)
Q Consensus 52 ~~dlk~lak~lKk~~acggs 71 (112)
-.++.+|.+.|+.+|+-+.+
T Consensus 15 vlE~~eLvk~leekfGVsaa 34 (40)
T 1dd4_C 15 VSELAELVKKLEDKFGVTAA 34 (40)
T ss_dssp HHHHHHHHHHHHHHTCCCSC
T ss_pred HHHHHHHHHHHHHHHCCCcc
Confidence 35789999999999998754
No 57
>2zf8_A MOTY, component of sodium-driven polar flagellar motor; beta barrel, 2-layer sandwich, flagellum, structural protein; 2.85A {Vibrio alginolyticus}
Probab=21.73 E-value=37 Score=25.70 Aligned_cols=24 Identities=17% Similarity=0.488 Sum_probs=20.1
Q ss_pred hhHHHHHHHHhCCCCCCCCeEEccC
Q 033744 88 HRKNVMIFLVKSKIVDKDRIKIHGF 112 (112)
Q Consensus 88 ~~~~i~~~L~~~G~~~~~~I~ihg~ 112 (112)
-.+.|+++|.+.|+ +++.|.+.|+
T Consensus 219 RA~aV~~~L~~~GI-~~~ri~~~G~ 242 (278)
T 2zf8_A 219 RAESLRDYFQSLGL-PEDRIQVQGY 242 (278)
T ss_dssp HHHHHHHHHHHHSC-CTTSEECCEE
T ss_pred HHHHHHHHHHHcCC-CHHHEEEEEE
Confidence 45679999999999 8898988774
No 58
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=21.66 E-value=1.1e+02 Score=18.93 Aligned_cols=44 Identities=9% Similarity=0.246 Sum_probs=27.3
Q ss_pred HHHHHhhHhccCcEEE-----ecCC---CCeEEEEcCc--hhHHHHHHHHhCCC
Q 033744 58 ILKDLKKEFCCNGNVV-----NDKV---LGKVIQLQGD--HRKNVMIFLVKSKI 101 (112)
Q Consensus 58 lak~lKk~~acggsv~-----~~p~---~g~~I~lQGD--~~~~i~~~L~~~G~ 101 (112)
+...+-++|+...++. ...+ +...+++.|+ ..++..++|.+.|+
T Consensus 39 vis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v 92 (101)
T 2qrr_A 39 LMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRENNV 92 (101)
T ss_dssp HHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 3444556666644333 2111 1247888997 45788999999987
No 59
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=21.61 E-value=1.7e+02 Score=18.85 Aligned_cols=55 Identities=13% Similarity=0.224 Sum_probs=33.0
Q ss_pred CCCCCcCCcCCC--CCCCCceEEEEEEEecCCeeEEEEecCCCchhHHHHHHHHhhHhccC
Q 033744 11 SYDPFADIKDSL--APGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCN 69 (112)
Q Consensus 11 ~~dpf~~~~~~~--~~~~~~~I~I~~~~R~grK~VT~V~GL~~~~dlk~lak~lKk~~acg 69 (112)
+-||+-+..++. .......|.|++.- .|+...-. +...--+++|..++..+.++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~I~IkV~~-~g~~i~fk---Ik~tt~l~kL~~ay~ek~gi~ 67 (106)
T 2eke_C 11 SQDPLVPRGSEVKPEVKPETHINLKVSD-GSSEIFFK---IKKTTPLRRLMEAFAKRQGKE 67 (106)
T ss_dssp --CCCCCCCCCCCCCCCCCSEEEEEEEC-SSCEEEEE---EETTSCTHHHHHHHHHHHTCC
T ss_pred ccCCCcCCCcccCCCCCCCCeEEEEEec-CCcEEEEE---eCCCCHHHHHHHHHHHHhCCC
Confidence 557777655544 33456788898887 66432222 333445777778888877765
No 60
>2h3j_A Hypothetical protein PA4359; NESG, GFT structural genomics, PAT89, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.34.1.2
Probab=20.88 E-value=67 Score=18.60 Aligned_cols=30 Identities=3% Similarity=0.013 Sum_probs=22.6
Q ss_pred EEEEcCchhHHHHHHHHhCCCCCCCCeEEc
Q 033744 81 VIQLQGDHRKNVMIFLVKSKIVDKDRIKIH 110 (112)
Q Consensus 81 ~I~lQGD~~~~i~~~L~~~G~~~~~~I~ih 110 (112)
...+.++....+..+|.+.|+.|...|+|.
T Consensus 12 I~~i~~~~~~~~~~rL~~lGl~~G~~v~v~ 41 (75)
T 2h3j_A 12 ITGYSPAISNGYRQRLFSMGLLPGAALRVV 41 (75)
T ss_dssp EEEECTTCCTTHHHHHHHHTCCTTCEEEEE
T ss_pred EEEEeCCCCHHHHHHHHHcCCCCCCEEEEE
Confidence 456666334568899999999998888774
No 61
>2gcx_A FEOA, ferrous iron transport protein A; NMR {Klebsiella pneumoniae} SCOP: b.34.1.2
Probab=20.58 E-value=49 Score=19.40 Aligned_cols=30 Identities=7% Similarity=0.050 Sum_probs=22.7
Q ss_pred EEEEcCchhHHHHHHHHhCCCCCCCCeEEc
Q 033744 81 VIQLQGDHRKNVMIFLVKSKIVDKDRIKIH 110 (112)
Q Consensus 81 ~I~lQGD~~~~i~~~L~~~G~~~~~~I~ih 110 (112)
...|.++....+..+|.+.|+.|...|+|.
T Consensus 11 I~~i~~~~~~~~~~rL~~lGl~pG~~v~v~ 40 (75)
T 2gcx_A 11 ITGFSRDISPAYRQKLLSLGMLPGSSFHVV 40 (75)
T ss_dssp EECCCSSCCHHHHHHHTTTTCCSSEEEEEC
T ss_pred EEEEeCCCCHHHHHHHHHCCCCCCCEEEEE
Confidence 344555445678999999999998888774
No 62
>2v8q_B 5'-AMP-activated protein kinase subunit beta-2; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Homo sapiens} SCOP: d.353.1.1 PDB: 2v92_B* 2v9j_B* 2y8l_B* 2y8q_B* 2y94_B* 2ya3_B*
Probab=20.40 E-value=1.4e+02 Score=19.01 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=16.9
Q ss_pred CCceEEEEEEEecCCeeEEEE
Q 033744 26 DKGYVHLRVQQRNGKKCLTTV 46 (112)
Q Consensus 26 ~~~~I~I~~~~R~grK~VT~V 46 (112)
....+.+..-.|=.+|+||+|
T Consensus 62 k~~v~alg~T~Ry~~KyVT~v 82 (87)
T 2v8q_B 62 KDSVMVLSATHRYKKKYVTTL 82 (87)
T ss_dssp BTTEEEEEEEEEETTEEEEEE
T ss_pred cCCeEEEeeeeeecceeEEEE
Confidence 345677788888899999998
No 63
>2gx5_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, GAF domain; HET: PG4 P6G PCG PGE; 1.74A {Bacillus subtilis} PDB: 2b18_A 2hgv_A*
Probab=20.01 E-value=78 Score=22.47 Aligned_cols=50 Identities=16% Similarity=0.164 Sum_probs=34.2
Q ss_pred chhHHHHHHHHhhHhccCcEEEecCCCCeE---EEEcCchhHHHHHHHHhCCCCCC
Q 033744 52 DFGYQKILKDLKKEFCCNGNVVNDKVLGKV---IQLQGDHRKNVMIFLVKSKIVDK 104 (112)
Q Consensus 52 ~~dlk~lak~lKk~~acggsv~~~p~~g~~---I~lQGD~~~~i~~~L~~~G~~~~ 104 (112)
.++++++|+.|...+.|+..|... . |+. -..++-..+.+.+++.++.| |+
T Consensus 31 ~v~f~eia~vLs~vL~~NvyIvs~-~-GkiLG~~~~~~~~~~~~~~~~~~~~f-p~ 83 (170)
T 2gx5_A 31 PVNFKEMAETLRDVIDSNIFVVSR-R-GKLLGYSINQQIENDRMKKMLEDRQF-PE 83 (170)
T ss_dssp CCCHHHHHHHHHHHHTSEEEEEET-T-SBEEEEECSSCCCCHHHHHHHHHTBC-CH
T ss_pred CCCHHHHHHHHHHHhCCCEEEEcC-C-CCEEEEecccccchHHHHHHHhcCcC-CH
Confidence 789999999999999999999742 2 222 12233335777777766555 54
Done!