RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 033744
(112 letters)
>gnl|CDD|130228 TIGR01160, SUI1_MOF2, translation initiation factor SUI1,
eukaryotic. Alternate name: MOF2. A similar protein
family (see TIGRFAMs model TIGR01158) is found in
prokaryotes. The human proteins complements a yeast SUI1
mutatation [Protein synthesis, Translation factors].
Length = 110
Score = 143 bits (362), Expect = 6e-46
Identities = 62/110 (56%), Positives = 79/110 (71%), Gaps = 2/110 (1%)
Query: 5 DSQIPTSYDPFADI--KDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDL 62
Q S+DPFAD DS PG Y+H+R+QQRNG+K LTTVQGL +++ +KI+K L
Sbjct: 1 SIQNLKSFDPFADAGDDDSALPGTSNYIHIRIQQRNGRKTLTTVQGLPKEYDLKKIVKAL 60
Query: 63 KKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112
KKEF CNG V+ D +G+VIQLQGD RKNV FL+ ++ KD+IKIHGF
Sbjct: 61 KKEFACNGTVIEDPEMGEVIQLQGDQRKNVCEFLISQGLLKKDQIKIHGF 110
>gnl|CDD|211318 cd11566, eIF1_SUI1, Eukaryotic initiation factor 1. eIF1/SUI1
(eukaryotic initiation factor 1) plays an important role
in accurate initiator codon recognition during
translation initiation. eIF1 interacts with 18S rRNA in
the 40S ribosomal subunit during eukaryotic translation
initiation. Point mutations in the yeast eIF1 implicate
the protein in maintaining accurate start-site selection
but its mechanism of action is unknown.
Length = 84
Score = 131 bits (331), Expect = 2e-41
Identities = 53/84 (63%), Positives = 64/84 (76%)
Query: 28 GYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGD 87
GY+H+R+QQRNG+K LTTVQGL E+F +KILK KKEF CNG VV D G+VIQLQGD
Sbjct: 1 GYIHIRIQQRNGRKTLTTVQGLPEEFDLKKILKAFKKEFACNGTVVEDPEYGEVIQLQGD 60
Query: 88 HRKNVMIFLVKSKIVDKDRIKIHG 111
RKN+ FL++ I KD IK+HG
Sbjct: 61 QRKNIKEFLLEEGIAKKDNIKVHG 84
>gnl|CDD|216391 pfam01253, SUI1, Translation initiation factor SUI1.
Length = 74
Score = 74.1 bits (183), Expect = 4e-19
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 24 PGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGY--QKILKDLKKEFCCNGNVVNDKVLGKV 81
+ + +R ++R G K +T V GL E FG +K+ K+LKK+F C G V + G+
Sbjct: 1 KKEDQKIRIRREKRRGGKTVTVVTGL-ELFGIDLKKLAKELKKKFGCGGTVKD----GEE 55
Query: 82 IQLQGDHRKNVMIFLVK 98
I++QGDHR V L K
Sbjct: 56 IEIQGDHRDKVKDLLEK 72
>gnl|CDD|223102 COG0023, SUI1, Translation initiation factor 1 (eIF-1/SUI1) and
related proteins [Translation, ribosomal structure and
biogenesis].
Length = 104
Score = 72.7 bits (179), Expect = 3e-18
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Query: 5 DSQIPTSYDPFADIKDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKE-DFGYQKILKDLK 63
+ P + +A V +R + R K +T ++GL D +K+ K+LK
Sbjct: 4 STICGRIGLPKELTCEEVAKEGDQIVRIRRETRRKGKTVTIIEGLDLKDIDLKKLAKELK 63
Query: 64 KEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIH 110
K+ C G V + I++QGDHR V L+K K I I
Sbjct: 64 KKCACGGTVKDG-----EIEIQGDHRDKVKELLIK-KGFKVKNIGIE 104
>gnl|CDD|211317 cd00474, eIF1_SUI1_like, Eukaryotic initiation factor 1 and related
proteins. Members of the eIF1/SUI1 (eukaryotic
initiation factor 1) family are found in eukaryotes,
archaea, and some bacteria; eukaryotic members are
understood to play an important role in accurate
initiator codon recognition during translation
initiation. eIF1 interacts with 18S rRNA in the 40S
ribosomal subunit during eukaryotic translation
initiation. Point mutations in the yeast eIF1 implicate
the protein in maintaining accurate start-site selection
but its mechanism of action is unknown. The function of
non-eukaryotic family members is also unclear.
Length = 78
Score = 66.7 bits (163), Expect = 5e-16
Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 30 VHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHR 89
+H++V+QR+G K +T V+GL +K+ +LKK+ C G+V +K I++QGDH
Sbjct: 2 IHIKVEQRSGGKKVTKVEGLPAYIDLRKLADELKKKLGCGGSVEGEK---MEIEIQGDHT 58
Query: 90 KNVMIFLVKSKIVDKDRIKIH 110
+++ L + K +DKD +++
Sbjct: 59 DQIIVAL-EEKGIDKDWVELL 78
>gnl|CDD|211320 cd11607, DENR_C, C-terminal domain of DENR and related proteins.
DENR (density regulated protein), together with MCT-1
(multiple copies T cell malignancies), has been shown to
have similar function as eIF2D translation initiation
factor (also known as ligatin), which is involved in the
recruitment and delivery of aminoacyl-tRNAs to the
P-site of the eukaryotic ribosome in a GTP-independent
manner.
Length = 86
Score = 47.9 bits (115), Expect = 1e-08
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 30 VHLRVQQRNGKKCLTTVQGLKEDFG--YQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGD 87
V ++ RN +K +TTV GL E FG +K K K+F C +V I +QGD
Sbjct: 3 VTIKRISRNKRKFVTTVTGL-ETFGIDLKKAAKLFAKKFACGASVTKGAEGKDEIVIQGD 61
Query: 88 HRKNVMIFLV-KSKIVDKDRIKI 109
+++ ++ K +D+D I+I
Sbjct: 62 VTDDIVDLILEKWPEIDEDNIEI 84
>gnl|CDD|130226 TIGR01158, SUI1_rel, translation initation factor SUI1, putative,
prokaryotic. This family of archaeal and bacterial
proteins is homologous to the eukaryotic translation
intiation factor SUI1 involved in directing the
ribosome to the proper start site of translation by
functioning in concert with eIF-2 and the initiator
tRNA-Met [Protein synthesis, Translation factors].
Length = 101
Score = 44.3 bits (105), Expect = 4e-07
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 19 KDSLAPGDKGYVHLRVQQRNGK-KCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVVNDK 76
++ P + V ++ + R K K +T ++GL D +++ K+LK + C G V +
Sbjct: 15 EEVAKPKEDQVVRIQRETRGRKGKGVTIIEGLDLSDIDLKELAKELKSKCGCGGTVKDG- 73
Query: 77 VLGKVIQLQGDHRKNVMIFLVK 98
VI++QGDHR V L K
Sbjct: 74 ----VIEIQGDHRDRVKDLLEK 91
>gnl|CDD|179173 PRK00939, PRK00939, translation initiation factor Sui1; Reviewed.
Length = 99
Score = 41.8 bits (99), Expect = 3e-06
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 30 VHLRVQQRNGKKCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDH 88
+ ++V +R K +T ++G+ D +++ K LK + C G V + + I+LQGDH
Sbjct: 26 IKIKVDKRRYGKEVTIIEGIDPKDIDLKELAKKLKSKLACGGTVKDGR-----IELQGDH 80
Query: 89 RKNVMIFLVK 98
R+ V L+K
Sbjct: 81 RERVKELLIK 90
>gnl|CDD|211319 cd11567, YciH_like, Homologs of eIF1/SUI1 including Escherichia
coli YciH. Members of the eIF1/SUI1 (eukaryotic
initiation factor 1) family are found in eukaryotes,
archaea, and some bacteria; eukaryotic members are
understood to play an important role in accurate
initiator codon recognition during translation
initiation. The function of non-eukaryotic family
members is unclear. Escherichia coli YciH is a
non-essential protein and was reported to be able to
perform some of the functions of IF3 in prokaryotic
initiation.
Length = 76
Score = 37.5 bits (88), Expect = 9e-05
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 30 VHLRVQQRNGKKCLTTVQGLK-EDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDH 88
V L + R GK +T ++GL + +++ K+LKK+ C G V + I+LQGDH
Sbjct: 5 VRLEKRGRGGKT-VTVIEGLPLSEEDLKELAKELKKKCGCGGTVKDG-----EIELQGDH 58
Query: 89 RKNVMIFLVK 98
R+ + L K
Sbjct: 59 REKIKELLEK 68
>gnl|CDD|211321 cd11608, eIF2D_C, C-terminal domain of eIF2D and related proteins.
eIF2D translation initiation factor (also known as
ligatin) is involved in the recruitment and delivery of
aminoacyl-tRNAs to the P-site of the eukaryotic ribosome
in a GTP-independent manner.
Length = 85
Score = 37.5 bits (88), Expect = 1e-04
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 30 VHLRVQQRNGKKCLTTVQGLKEDFGY--QKILKDLKKEFCCNGNVVNDKVLGK--VIQLQ 85
+ + ++R G K +T + GL E FG ++ K+L+K+ + +V K +Q+Q
Sbjct: 2 IDITTERRQGNKKVTLISGL-ESFGIDPEEFAKELQKKCAASTSVSPLPGKKKGVEVQVQ 60
Query: 86 GDHRKNVMIFLVKSKIVDK 104
G+ K V L + V K
Sbjct: 61 GNQVKFVAKLLTEKYGVPK 79
>gnl|CDD|168689 PRK06824, PRK06824, translation initiation factor Sui1; Validated.
Length = 118
Score = 33.1 bits (76), Expect = 0.007
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Query: 19 KDSLAPGDKGYVHLRVQQRN-GKKCLTTVQG--LKEDFGYQKILKDLKKEFCCNGNVVND 75
K + AP G V +R + + G K +T + G L ED +++ K+LK+ C G + D
Sbjct: 32 KQAAAPAGDGIVRVRRETKGRGGKTVTVITGVPLAED-ALKELAKELKRR-CGTGGTLKD 89
Query: 76 KVLGKVIQLQGDHRKNVMIFLVKS 99
V I++QGDH + ++ L+K
Sbjct: 90 GV----IEIQGDHVELLLAELLKR 109
>gnl|CDD|236021 PRK07451, PRK07451, translation initiation factor Sui1; Validated.
Length = 115
Score = 32.1 bits (73), Expect = 0.022
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 9/71 (12%)
Query: 32 LRVQ-QRNGK--KCLTTVQGLK-EDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGD 87
LRVQ R+G+ K +T + G + + K+LK LK C +G V D I++QGD
Sbjct: 40 LRVQATRSGRKGKTVTVITGFQHKPETLAKLLKQLKT-QCGSGGTVKDNT----IEIQGD 94
Query: 88 HRKNVMIFLVK 98
HR+ ++ L+K
Sbjct: 95 HRQKILEILIK 105
>gnl|CDD|190972 pfam04405, ScdA_N, Domain of Unknown function (DUF542). This
domain is always found in conjunction with the HHE
domain (pfam03794) at the N-terminus.
Length = 56
Score = 29.0 bits (66), Expect = 0.12
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 51 EDFGYQKILKDLKKEFCCNGNV 72
ED ++ + +FCC G V
Sbjct: 11 EDPRAARVFRKYGIDFCCGGKV 32
>gnl|CDD|233294 TIGR01159, DRP1, density-regulated protein DRP1. This protein
family shows weak but suggestive similarity to
translation initiation factor SUI1 and its prokaryotic
homologs.
Length = 173
Score = 28.3 bits (63), Expect = 0.76
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 22 LAPGDKGYVHLRVQQRNGKKCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVVNDKVLGK 80
V ++ + R +K +T ++GL+ D +K K ++F +V +
Sbjct: 83 KKKKLPQKVTIKREPRTKRKFVTVIKGLETFDIDLKKASKTFAQKFATGCSVSKSVTGKE 142
Query: 81 VIQLQGD 87
I +QGD
Sbjct: 143 EIVIQGD 149
>gnl|CDD|234295 TIGR03652, FeS_repair_RIC, iron-sulfur cluster repair di-iron
protein. Members of this protein family, designated
variously as YftE, NorA, DrnN, and NipC, are di-iron
proteins involved in the repair of iron-sulfur
clusters. Previously assigned names reflect pleiotropic
effects of damage from NO or other oxidative stress
when this protein is mutated. The suggested name now is
RIC, for Repair of Iron Centers [Biosynthesis of
cofactors, prosthetic groups, and carriers, Other].
Length = 216
Score = 28.0 bits (63), Expect = 0.79
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 51 EDFGYQKILKDLKKEFCCNGNV 72
E +I + +FCC GNV
Sbjct: 7 EIPRAARIFRKYGIDFCCGGNV 28
>gnl|CDD|235619 PRK05826, PRK05826, pyruvate kinase; Provisional.
Length = 465
Score = 26.3 bits (59), Expect = 4.5
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 8/46 (17%)
Query: 7 QIPTSYDPFADIKDSLAPGDK-----GYVHLRVQQRNGKKCLTTVQ 47
++ Y + PGD G + L+V + +G + T V+
Sbjct: 106 RVGVDYKGLPK---DVKPGDILLLDDGKLQLKVVEVDGDEVETEVK 148
>gnl|CDD|129374 TIGR00273, TIGR00273, iron-sulfur cluster-binding protein. Members
of this family have a perfect 4Fe-4S binding motif
C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or
imperfect (the first Cys replaced by Ser) second copy.
Members probably bind two 4fe-4S iron-sulfur clusters
[Energy metabolism, Electron transport].
Length = 432
Score = 26.0 bits (57), Expect = 4.5
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 34 VQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGK-VIQLQGDHRKNV 92
Q++NGKK + + + E+ G ++L+ + G V + LG+ ++QL GD ++
Sbjct: 84 AQEKNGKKVVKSKSMVSEEIGLNEVLEKI-------GIEVWETDLGELILQLDGDPPSHI 136
Query: 93 MI 94
++
Sbjct: 137 VV 138
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.142 0.418
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,619,684
Number of extensions: 470498
Number of successful extensions: 383
Number of sequences better than 10.0: 1
Number of HSP's gapped: 372
Number of HSP's successfully gapped: 24
Length of query: 112
Length of database: 10,937,602
Length adjustment: 76
Effective length of query: 36
Effective length of database: 7,566,698
Effective search space: 272401128
Effective search space used: 272401128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.4 bits)