RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 033744
         (112 letters)



>d2if1a_ d.64.1.1 (A:) Eukaryotic translation initiation factor
           eIF-1 (SUI1) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 126

 Score =  112 bits (281), Expect = 5e-34
 Identities = 54/109 (49%), Positives = 75/109 (68%), Gaps = 3/109 (2%)

Query: 7   QIPTSYDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLK 63
           Q   S+DPFAD     D L  G + Y+H+R+QQRNG+K LTTVQG+ +D+  +K++K  K
Sbjct: 18  QNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFK 77

Query: 64  KEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112
           K+F CNG V+     G+VIQLQGD RKN+  FLV+  +   D++K+HGF
Sbjct: 78  KKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 126


>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]}
          Length = 83

 Score = 54.2 bits (131), Expect = 9e-12
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 7/74 (9%)

Query: 27 KGYVHLRVQQRN-GKKCLTTVQGLK-EDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQL 84
           G V ++ Q      K +  + G+  +D    K+  +LKK+  C G V +      VI++
Sbjct: 3  DGVVRIQRQTSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAVKDG-----VIEI 57

Query: 85 QGDHRKNVMIFLVK 98
          QGD R  +   L  
Sbjct: 58 QGDKRDLLKSLLEA 71


>d1tg7a5 c.1.8.14 (A:41-394) Beta-galactosidase LacA, N-terminal
           domain {Penicillium sp. [TaxId: 5081]}
          Length = 354

 Score = 25.9 bits (56), Expect = 1.3
 Identities = 8/30 (26%), Positives = 13/30 (43%)

Query: 8   IPTSYDPFADIKDSLAPGDKGYVHLRVQQR 37
             TSYD  + I +S     + Y  L++   
Sbjct: 319 GYTSYDYGSAISESRNITREKYSELKLLGN 348


>d1kfwa1 c.1.8.5 (A:10-327,A:389-444) Psychrophilic chitinase B
           {Arthrobacter sp., tad20 [TaxId: 1667]}
          Length = 374

 Score = 24.1 bits (51), Expect = 5.4
 Identities = 7/51 (13%), Positives = 14/51 (27%)

Query: 9   PTSYDPFADIKDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKIL 59
             + D +AD     A             +        ++ LK      K++
Sbjct: 71  DGAGDAWADFGMGYAADKSVSGKADTWDQPLAGSFNQLKQLKAKNPKLKVM 121


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.142    0.418 

Gapped
Lambda     K      H
   0.267   0.0597    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 432,267
Number of extensions: 18455
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 8
Length of query: 112
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 41
Effective length of database: 1,432,766
Effective search space: 58743406
Effective search space used: 58743406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)