Query 033745
Match_columns 112
No_of_seqs 134 out of 1567
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 05:49:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033745.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033745hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0723 Molecular chaperone (D 100.0 2.6E-29 5.5E-34 167.5 11.7 105 1-105 1-109 (112)
2 PF03656 Pam16: Pam16; InterP 99.9 2.3E-28 5E-33 168.8 5.9 106 1-106 1-112 (127)
3 PTZ00100 DnaJ chaperone protei 99.9 8E-27 1.7E-31 158.8 13.0 102 1-103 1-116 (116)
4 KOG3442 Uncharacterized conser 99.9 5.1E-22 1.1E-26 135.5 7.9 104 3-106 2-113 (132)
5 COG0484 DnaJ DnaJ-class molecu 99.7 1.4E-17 3.1E-22 132.0 5.6 60 49-108 1-64 (371)
6 PHA03102 Small T antigen; Revi 99.7 2E-16 4.2E-21 112.5 6.7 60 50-109 3-64 (153)
7 PTZ00037 DnaJ_C chaperone prot 99.6 3.3E-16 7.1E-21 126.4 6.4 64 45-108 21-84 (421)
8 KOG0713 Molecular chaperone (D 99.6 6.3E-16 1.4E-20 120.7 5.1 60 49-108 13-76 (336)
9 smart00271 DnaJ DnaJ molecular 99.6 2.2E-15 4.7E-20 90.2 6.3 53 53-105 2-59 (60)
10 cd06257 DnaJ DnaJ domain or J- 99.6 4.7E-15 1E-19 87.2 5.9 51 53-103 1-55 (55)
11 PRK14296 chaperone protein Dna 99.6 2.6E-15 5.6E-20 119.4 5.3 60 49-108 1-63 (372)
12 PF00226 DnaJ: DnaJ domain; I 99.6 8.7E-15 1.9E-19 88.9 6.2 56 53-108 1-61 (64)
13 PRK14288 chaperone protein Dna 99.5 1.2E-14 2.6E-19 115.4 4.9 57 52-108 3-63 (369)
14 PRK14286 chaperone protein Dna 99.5 1.3E-14 2.8E-19 115.4 4.9 60 49-108 1-64 (372)
15 PRK14279 chaperone protein Dna 99.5 1.8E-14 3.9E-19 115.3 5.7 58 51-108 8-69 (392)
16 PRK14299 chaperone protein Dna 99.5 1.6E-14 3.6E-19 111.4 5.0 59 49-107 1-62 (291)
17 PRK14287 chaperone protein Dna 99.5 2E-14 4.4E-19 114.2 5.4 59 50-108 2-63 (371)
18 PRK14282 chaperone protein Dna 99.5 2.6E-14 5.7E-19 113.4 5.1 60 49-108 1-65 (369)
19 PRK14276 chaperone protein Dna 99.5 3.5E-14 7.5E-19 113.1 5.3 59 50-108 2-63 (380)
20 PRK14283 chaperone protein Dna 99.5 4.6E-14 1E-18 112.3 5.3 58 51-108 4-64 (378)
21 PRK14280 chaperone protein Dna 99.5 4.6E-14 9.9E-19 112.3 5.1 60 49-108 1-63 (376)
22 PRK14285 chaperone protein Dna 99.5 6.5E-14 1.4E-18 111.1 5.9 57 52-108 3-63 (365)
23 PRK14298 chaperone protein Dna 99.5 5.8E-14 1.3E-18 111.8 5.6 58 51-108 4-64 (377)
24 KOG0712 Molecular chaperone (D 99.5 4.4E-14 9.5E-19 111.0 4.8 56 53-108 5-61 (337)
25 PRK10767 chaperone protein Dna 99.5 5.4E-14 1.2E-18 111.6 5.1 60 49-108 1-64 (371)
26 PRK14294 chaperone protein Dna 99.5 4.8E-14 1E-18 111.8 4.8 60 49-108 1-64 (366)
27 PRK14301 chaperone protein Dna 99.5 6.6E-14 1.4E-18 111.4 5.3 59 50-108 2-64 (373)
28 PRK14297 chaperone protein Dna 99.5 8.1E-14 1.7E-18 111.0 5.6 58 51-108 3-64 (380)
29 PRK10266 curved DNA-binding pr 99.5 8.1E-14 1.8E-18 108.2 5.1 60 49-108 1-63 (306)
30 PRK14295 chaperone protein Dna 99.5 9.6E-14 2.1E-18 111.0 5.7 57 52-108 9-69 (389)
31 PRK14278 chaperone protein Dna 99.5 7.1E-14 1.5E-18 111.3 4.9 57 52-108 3-62 (378)
32 PRK09430 djlA Dna-J like membr 99.4 3.3E-13 7.2E-18 103.3 7.6 58 47-104 195-263 (267)
33 PRK14281 chaperone protein Dna 99.4 1.6E-13 3.4E-18 110.0 5.9 57 52-108 3-63 (397)
34 PHA02624 large T antigen; Prov 99.4 2.5E-13 5.4E-18 113.6 7.2 60 51-110 10-71 (647)
35 PRK14277 chaperone protein Dna 99.4 1.4E-13 3.1E-18 109.8 4.8 57 52-108 5-65 (386)
36 PRK14291 chaperone protein Dna 99.4 2.9E-13 6.3E-18 107.9 5.9 57 52-108 3-62 (382)
37 PRK14300 chaperone protein Dna 99.4 2.6E-13 5.6E-18 107.9 5.5 57 52-108 3-62 (372)
38 KOG0721 Molecular chaperone (D 99.4 4.7E-13 1E-17 99.5 5.4 59 49-107 96-158 (230)
39 KOG0717 Molecular chaperone (D 99.4 7.3E-13 1.6E-17 107.2 6.4 59 50-108 6-69 (508)
40 PRK14284 chaperone protein Dna 99.4 4.9E-13 1.1E-17 106.9 5.3 56 53-108 2-61 (391)
41 PRK14292 chaperone protein Dna 99.4 7.8E-13 1.7E-17 105.0 6.4 56 53-108 3-61 (371)
42 TIGR02349 DnaJ_bact chaperone 99.4 6E-13 1.3E-17 104.9 5.6 55 54-108 2-59 (354)
43 PRK14289 chaperone protein Dna 99.4 5.6E-13 1.2E-17 106.3 5.1 59 50-108 3-65 (386)
44 KOG0716 Molecular chaperone (D 99.4 1.6E-12 3.6E-17 99.2 7.2 59 50-108 29-91 (279)
45 PRK14290 chaperone protein Dna 99.4 8.7E-13 1.9E-17 104.6 5.7 57 52-108 3-64 (365)
46 KOG0715 Molecular chaperone (D 99.3 1E-12 2.2E-17 101.6 5.1 62 47-108 38-102 (288)
47 PRK14293 chaperone protein Dna 99.3 1.5E-12 3.3E-17 103.5 5.3 57 52-108 3-62 (374)
48 KOG0718 Molecular chaperone (D 99.3 6.5E-12 1.4E-16 102.0 6.3 59 50-108 7-72 (546)
49 KOG0691 Molecular chaperone (D 99.3 5.7E-12 1.2E-16 97.8 5.2 58 51-108 4-65 (296)
50 COG2214 CbpA DnaJ-class molecu 99.2 2.1E-11 4.6E-16 86.8 6.0 58 51-108 5-67 (237)
51 PRK05014 hscB co-chaperone Hsc 99.2 3.3E-11 7.2E-16 87.0 5.6 56 53-108 2-68 (171)
52 PTZ00341 Ring-infected erythro 99.2 2E-11 4.4E-16 106.0 5.2 60 49-108 570-632 (1136)
53 PRK01356 hscB co-chaperone Hsc 99.2 3.3E-11 7.2E-16 86.7 5.4 56 53-108 3-67 (166)
54 TIGR03835 termin_org_DnaJ term 99.2 3.3E-11 7.2E-16 102.7 5.6 57 52-108 2-61 (871)
55 PRK00294 hscB co-chaperone Hsc 99.2 4.7E-11 1E-15 86.4 5.1 58 51-108 3-71 (173)
56 PRK03578 hscB co-chaperone Hsc 99.1 8.9E-11 1.9E-15 85.2 5.3 57 52-108 6-73 (176)
57 KOG0719 Molecular chaperone (D 99.1 1.6E-10 3.4E-15 87.1 4.4 56 53-108 15-76 (264)
58 KOG1789 Endocytosis protein RM 99.0 1.2E-09 2.7E-14 95.9 9.5 73 18-103 1260-1337(2235)
59 PRK01773 hscB co-chaperone Hsc 98.9 1.7E-09 3.7E-14 78.3 5.3 56 53-108 3-69 (173)
60 KOG0720 Molecular chaperone (D 98.9 9E-10 1.9E-14 89.3 3.9 58 51-108 234-294 (490)
61 KOG0722 Molecular chaperone (D 98.9 9.9E-10 2.1E-14 84.0 3.2 58 51-108 32-92 (329)
62 KOG0624 dsRNA-activated protei 98.7 1.2E-08 2.6E-13 81.4 4.8 59 50-108 392-457 (504)
63 TIGR00714 hscB Fe-S protein as 98.7 2.1E-08 4.7E-13 71.4 5.0 45 64-108 3-56 (157)
64 KOG0550 Molecular chaperone (D 98.6 2.5E-08 5.4E-13 80.6 4.2 59 51-109 372-435 (486)
65 KOG1150 Predicted molecular ch 98.6 3E-08 6.4E-13 73.6 3.8 54 52-105 53-111 (250)
66 KOG0714 Molecular chaperone (D 98.6 2.8E-08 6.1E-13 73.9 3.6 57 52-108 3-64 (306)
67 COG5407 SEC63 Preprotein trans 98.6 5E-08 1.1E-12 79.6 3.4 55 53-107 99-162 (610)
68 KOG0568 Molecular chaperone (D 98.4 6.4E-07 1.4E-11 68.1 6.5 52 51-102 46-101 (342)
69 COG5269 ZUO1 Ribosome-associat 97.7 8.6E-05 1.9E-09 57.8 5.0 57 52-108 43-108 (379)
70 COG1076 DjlA DnaJ-domain-conta 97.6 6E-05 1.3E-09 54.3 3.9 50 52-101 113-173 (174)
71 PF13446 RPT: A repeated domai 97.1 0.0032 7E-08 37.8 6.6 47 49-102 2-48 (62)
72 KOG3192 Mitochondrial J-type c 97.1 0.00089 1.9E-08 48.0 4.4 59 50-108 6-75 (168)
73 KOG0431 Auxilin-like protein a 96.5 0.0034 7.4E-08 51.6 4.0 37 63-99 399-442 (453)
74 PF11833 DUF3353: Protein of u 96.0 0.019 4.1E-07 42.4 5.5 39 61-103 1-39 (194)
75 COG1076 DjlA DnaJ-domain-conta 94.9 0.017 3.7E-07 41.6 1.9 45 64-108 15-68 (174)
76 PF14687 DUF4460: Domain of un 82.8 1.9 4.1E-05 29.1 3.4 23 64-86 6-28 (112)
77 PF03820 Mtc: Tricarboxylate c 77.3 8.2 0.00018 30.5 5.8 67 45-111 23-125 (308)
78 COG5552 Uncharacterized conser 74.2 20 0.00043 22.9 5.9 27 55-81 6-32 (88)
79 KOG3767 Sideroflexin [General 67.2 6.6 0.00014 31.3 3.1 65 47-111 43-143 (328)
80 TIGR00824 EIIA-man PTS system, 53.0 30 0.00065 22.9 4.0 36 55-90 30-74 (116)
81 KOG0724 Zuotin and related mol 50.1 25 0.00054 27.3 3.8 43 64-106 4-54 (335)
82 PF02529 PetG: Cytochrome B6-F 49.4 43 0.00094 18.3 4.0 31 1-31 1-32 (37)
83 PRK00665 petG cytochrome b6-f 47.3 47 0.001 18.1 3.9 31 1-31 1-32 (37)
84 CHL00008 petG cytochrome b6/f 47.0 48 0.001 18.1 3.9 31 1-31 1-32 (37)
85 smart00427 H2B Histone H2B. 45.4 53 0.0011 21.4 4.1 14 74-87 8-21 (89)
86 PF12728 HTH_17: Helix-turn-he 44.3 19 0.00041 19.9 1.7 15 49-63 2-16 (51)
87 PF13950 Epimerase_Csub: UDP-g 43.7 57 0.0012 19.4 3.9 33 50-83 28-60 (62)
88 KOG3960 Myogenic helix-loop-he 42.5 18 0.00039 28.1 1.8 15 89-103 128-142 (284)
89 PF03206 NifW: Nitrogen fixati 42.4 1E+02 0.0022 20.5 6.7 55 49-103 12-76 (105)
90 PRK09649 RNA polymerase sigma 42.2 27 0.00059 24.5 2.7 38 46-83 144-181 (185)
91 PRK00810 nifW nitrogenase stab 41.2 1.1E+02 0.0024 20.7 5.7 33 49-81 16-53 (113)
92 PF08447 PAS_3: PAS fold; Int 38.8 16 0.00034 21.8 0.8 29 52-84 6-35 (91)
93 PF12669 P12: Virus attachment 38.6 46 0.001 19.7 2.9 19 6-24 3-23 (58)
94 TIGR01764 excise DNA binding d 38.3 28 0.0006 18.4 1.8 15 49-63 2-16 (49)
95 PF13374 TPR_10: Tetratricopep 37.9 21 0.00046 18.0 1.2 18 66-83 25-42 (42)
96 PF01466 Skp1: Skp1 family, di 37.9 50 0.0011 20.3 3.1 23 49-71 46-68 (78)
97 COG1072 CoaA Panthothenate kin 37.7 72 0.0016 25.1 4.5 38 44-81 20-57 (283)
98 PRK13798 putative OHCU decarbo 36.8 38 0.00083 24.2 2.7 11 89-99 99-109 (166)
99 PF04719 TAFII28: hTAFII28-lik 36.6 36 0.00077 22.1 2.3 25 52-76 63-90 (90)
100 PF08673 RsbU_N: Phosphoserine 36.2 65 0.0014 20.2 3.4 24 61-84 32-55 (77)
101 PF04282 DUF438: Family of unk 35.5 21 0.00045 22.2 1.0 26 57-82 6-31 (71)
102 PF15178 TOM_sub5: Mitochondri 35.4 48 0.001 19.2 2.4 23 56-78 3-25 (51)
103 PF13543 KSR1-SAM: SAM like do 34.9 1.5E+02 0.0034 20.5 5.8 58 44-101 62-128 (129)
104 KOG3219 Transcription initiati 34.4 42 0.00091 24.9 2.6 30 51-80 150-182 (195)
105 TIGR03759 conj_TIGR03759 integ 33.8 49 0.0011 24.7 2.9 48 53-102 38-86 (200)
106 PF04967 HTH_10: HTH DNA bindi 33.3 44 0.00096 19.5 2.1 32 46-77 21-52 (53)
107 PF05344 DUF746: Domain of Unk 32.8 84 0.0018 19.3 3.4 37 46-83 11-47 (65)
108 KOG1573 Aldehyde reductase [Ge 32.5 88 0.0019 23.0 4.0 40 45-84 69-115 (204)
109 PLN00158 histone H2B; Provisio 32.4 1.1E+02 0.0023 21.0 4.1 16 73-88 33-48 (116)
110 PF07739 TipAS: TipAS antibiot 31.8 62 0.0014 20.7 3.0 39 57-98 49-88 (118)
111 COG3755 Uncharacterized protei 31.1 62 0.0013 22.4 2.9 36 64-102 48-84 (127)
112 PF14019 DUF4235: Protein of u 31.0 1.3E+02 0.0028 18.7 4.1 27 4-30 3-29 (78)
113 PHA01083 hypothetical protein 30.6 2E+02 0.0044 20.5 5.8 41 41-81 36-89 (149)
114 PRK12529 RNA polymerase sigma 30.5 59 0.0013 22.6 2.8 31 48-78 143-173 (178)
115 COG2879 Uncharacterized small 30.2 48 0.001 20.3 2.0 16 71-86 26-41 (65)
116 PRK12547 RNA polymerase sigma 30.0 61 0.0013 22.1 2.8 15 49-63 129-143 (164)
117 TIGR00798 mtc tricarboxylate c 29.1 87 0.0019 25.0 3.8 65 47-111 34-133 (318)
118 PF07709 SRR: Seven Residue Re 29.0 53 0.0012 13.8 1.5 11 91-101 3-13 (14)
119 KOG2070 Guanine nucleotide exc 28.9 45 0.00098 28.6 2.2 33 69-101 246-281 (661)
120 cd04762 HTH_MerR-trunc Helix-T 28.8 40 0.00086 17.6 1.4 15 49-63 1-15 (49)
121 PF04512 Baculo_PEP_N: Baculov 28.3 55 0.0012 21.6 2.2 32 50-82 18-49 (97)
122 cd08048 TAF11 TATA Binding Pro 27.8 75 0.0016 20.3 2.7 16 61-76 69-84 (85)
123 TIGR03180 UraD_2 OHCU decarbox 27.7 70 0.0015 22.6 2.8 11 89-99 94-104 (158)
124 cd01388 SOX-TCF_HMG-box SOX-TC 27.6 1.1E+02 0.0023 18.2 3.3 33 72-105 15-47 (72)
125 PF10041 DUF2277: Uncharacteri 27.5 1.7E+02 0.0037 18.6 5.9 51 55-105 6-63 (78)
126 TIGR03164 UHCUDC OHCU decarbox 27.2 91 0.002 22.0 3.3 11 89-99 94-104 (157)
127 PF13955 Fst_toxin: Toxin Fst, 26.7 70 0.0015 15.3 1.8 10 3-12 6-15 (21)
128 PF11300 DUF3102: Protein of u 26.7 99 0.0022 21.4 3.3 16 48-63 89-104 (130)
129 cd04761 HTH_MerR-SF Helix-Turn 26.3 45 0.00098 17.8 1.3 30 49-84 1-30 (49)
130 PF13405 EF-hand_6: EF-hand do 26.0 95 0.002 15.2 3.4 14 73-86 2-15 (31)
131 PTZ00463 histone H2B; Provisio 25.6 97 0.0021 21.2 3.0 16 73-88 34-49 (117)
132 PF00076 RRM_1: RNA recognitio 25.4 53 0.0012 18.3 1.6 22 58-79 4-25 (70)
133 KOG2320 RAS effector RIN1 (con 25.0 75 0.0016 27.7 2.9 38 61-103 398-435 (651)
134 cd06170 LuxR_C_like C-terminal 24.7 76 0.0016 17.0 2.1 31 47-81 14-44 (57)
135 COG4930 Predicted ATP-dependen 24.6 3.6E+02 0.0077 23.1 6.6 30 65-94 415-444 (683)
136 PRK12511 RNA polymerase sigma 24.5 1.1E+02 0.0024 21.5 3.3 38 47-84 126-166 (182)
137 PF08989 DUF1896: Domain of un 23.9 67 0.0014 22.8 2.1 32 72-103 14-46 (144)
138 PRK09636 RNA polymerase sigma 23.9 1.7E+02 0.0038 22.1 4.6 33 47-79 130-162 (293)
139 PRK05439 pantothenate kinase; 22.9 2E+02 0.0042 22.7 4.7 36 44-79 24-59 (311)
140 PF01388 ARID: ARID/BRIGHT DNA 22.4 1.8E+02 0.0039 17.9 3.8 30 51-80 60-91 (92)
141 smart00421 HTH_LUXR helix_turn 22.3 92 0.002 16.5 2.1 30 47-80 17-46 (58)
142 COG4161 ArtP ABC-type arginine 21.9 1.1E+02 0.0023 22.9 2.9 54 52-105 105-161 (242)
143 smart00150 SPEC Spectrin repea 21.5 1.2E+02 0.0027 17.9 2.8 42 64-105 52-93 (101)
144 cd00006 PTS_IIA_man PTS_IIA, P 21.0 2.1E+02 0.0046 18.7 4.1 37 54-90 28-73 (122)
145 PRK08570 rpl19e 50S ribosomal 21.0 1.4E+02 0.0031 21.2 3.3 36 64-99 36-71 (150)
146 PF08281 Sigma70_r4_2: Sigma-7 20.5 59 0.0013 17.9 1.1 29 44-76 22-50 (54)
147 KOG0040 Ca2+-binding actin-bun 20.0 1.2E+02 0.0025 29.9 3.3 38 66-103 205-242 (2399)
No 1
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.6e-29 Score=167.53 Aligned_cols=105 Identities=62% Similarity=0.975 Sum_probs=98.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH----HHHHHHhCCCchhhhhhhhCCCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 033745 1 MVAPLIAGMAVAAAAYAGKYGIR----AWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRV 76 (112)
Q Consensus 1 m~~~~~~~l~~~~~~~~~r~~~~----A~~~~~~~~~~~~~~~~~~~~~~~~m~~~ea~~iLgl~~~~~~~eik~~yr~l 76 (112)
|+.++++|++|+++++.+|++++ +|+.....+..+.++.|+.|+|++.|+..||..||||.++++.+.||++||++
T Consensus 1 ~~~~i~~G~gvaa~a~ag~~gl~~~~~~~qa~~~~~~~~~~~~~y~GGF~~kMsr~EA~lIL~v~~s~~k~KikeaHrri 80 (112)
T KOG0723|consen 1 MVSPIIAGLGVAALAFAGRYGLWMKTLAKQAFKTLPKGPFFGAFYKGGFEPKMSRREAALILGVTPSLDKDKIKEAHRRI 80 (112)
T ss_pred CchhHHHhHHHHHHHHhchhhhhchhHHHHHHHHcCCCcchhhhhhcccccccchHHHHHHhCCCccccHHHHHHHHHHH
Confidence 88999999999999999999999 77777777766777899999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHHhcccc
Q 033745 77 MVANHPDAGGSHYLASKINEAKDIMLRRT 105 (112)
Q Consensus 77 ~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~ 105 (112)
+..||||+|||||+..+||||+++|+...
T Consensus 81 M~~NHPD~GGSPYlAsKINEAKdlLe~~~ 109 (112)
T KOG0723|consen 81 MLANHPDRGGSPYLASKINEAKDLLEGTS 109 (112)
T ss_pred HHcCCCcCCCCHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999998654
No 2
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=99.95 E-value=2.3e-28 Score=168.78 Aligned_cols=106 Identities=28% Similarity=0.362 Sum_probs=48.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch-hh-hhh----hhCCCCCCCCHHHHHHHhCCCCCCCHHHHHHHHH
Q 033745 1 MVAPLIAGMAVAAAAYAGKYGIRAWQAFKARPPTA-RM-RKF----YEGGFQPVMTRREAALILGVRESTPTEKVKEAHR 74 (112)
Q Consensus 1 m~~~~~~~l~~~~~~~~~r~~~~A~~~~~~~~~~~-~~-~~~----~~~~~~~~m~~~ea~~iLgl~~~~~~~eik~~yr 74 (112)
|+++++++|+|+++.+++|+|.+||||+..+.... .+ ... ........||.+||++||||++..++++|.++|+
T Consensus 1 Ma~riiaqiiv~G~~vvgRAf~~AyrQA~aa~~~a~~a~~~a~~~~~a~~~~~~Mtl~EA~~ILnv~~~~~~eeI~k~y~ 80 (127)
T PF03656_consen 1 MAKRIIAQIIVTGGQVVGRAFTQAYRQAAAAAQAAAGAGQNASARGAAASNSKGMTLDEARQILNVKEELSREEIQKRYK 80 (127)
T ss_dssp --------------------------------------------------------HHHHHHHHT--G--SHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHhhcCCCCHHHHHHHcCCCCccCHHHHHHHHH
Confidence 99999999999999999999999999998543221 11 111 1112334799999999999999999999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHhccccc
Q 033745 75 RVMVANHPDAGGSHYLASKINEAKDIMLRRTK 106 (112)
Q Consensus 75 ~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~k 106 (112)
+|+..|+|++|||+|+++||.+|+|+|..+.+
T Consensus 81 ~Lf~~Nd~~kGGSfYLQSKV~rAKErl~~El~ 112 (127)
T PF03656_consen 81 HLFKANDPSKGGSFYLQSKVFRAKERLEQELK 112 (127)
T ss_dssp HHHHHT-CCCTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCCcCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999997653
No 3
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.95 E-value=8e-27 Score=158.76 Aligned_cols=102 Identities=36% Similarity=0.663 Sum_probs=89.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc----------hhhhhhh----hCCCCCCCCHHHHHHHhCCCCCCCH
Q 033745 1 MVAPLIAGMAVAAAAYAGKYGIRAWQAFKARPPT----------ARMRKFY----EGGFQPVMTRREAALILGVRESTPT 66 (112)
Q Consensus 1 m~~~~~~~l~~~~~~~~~r~~~~A~~~~~~~~~~----------~~~~~~~----~~~~~~~m~~~ea~~iLgl~~~~~~ 66 (112)
|.+|+++ |++.++.+++|+++++|++....++. +..+.++ ..+|+..|+.+|||+||||+++++.
T Consensus 1 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~f~~~Ms~~eAy~ILGv~~~As~ 79 (116)
T PTZ00100 1 MMWPIVA-LTFGGGVLAVRYGYRYLKNQKIFGSNNMSFPLSGFNPSLGSLFLKNDLKGFENPMSKSEAYKILNISPTASK 79 (116)
T ss_pred CcchHHH-HHHhHHHHHHHHHHHHHHHHhhccCccccCCchhhhHHHHHHHhccccccccCCCCHHHHHHHcCCCCCCCH
Confidence 8899998 99999999999999999877665431 1233433 4589999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcc
Q 033745 67 EKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLR 103 (112)
Q Consensus 67 ~eik~~yr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~ 103 (112)
+||+++||+|+++||||++||+|.+++|++|||+|.+
T Consensus 80 ~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~k 116 (116)
T PTZ00100 80 ERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLLK 116 (116)
T ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999963
No 4
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.87 E-value=5.1e-22 Score=135.50 Aligned_cols=104 Identities=26% Similarity=0.325 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhh-h-------hhCCCCCCCCHHHHHHHhCCCCCCCHHHHHHHHH
Q 033745 3 APLIAGMAVAAAAYAGKYGIRAWQAFKARPPTARMRK-F-------YEGGFQPVMTRREAALILGVRESTPTEKVKEAHR 74 (112)
Q Consensus 3 ~~~~~~l~~~~~~~~~r~~~~A~~~~~~~~~~~~~~~-~-------~~~~~~~~m~~~ea~~iLgl~~~~~~~eik~~yr 74 (112)
+|.+++|+|+++.+++|+|.+||||..++....+..+ . ........||.+||.+|||+++..+.++|.++|.
T Consensus 2 ~R~~aqiIi~G~qvvgrAf~~A~RQeia~s~~aa~~~~a~k~g~~~~~~~~~~~iTlqEa~qILnV~~~ln~eei~k~ye 81 (132)
T KOG3442|consen 2 ARYLAQIIIMGSQVVGRAFVQAYRQEIAASQQAAARQAAGKSGTRSAEANSNGKITLQEAQQILNVKEPLNREEIEKRYE 81 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccccccccccHHHHhhHhCCCCCCCHHHHHHHHH
Confidence 6899999999999999999999999987653332111 1 1112235699999999999999999999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHhccccc
Q 033745 75 RVMVANHPDAGGSHYLASKINEAKDIMLRRTK 106 (112)
Q Consensus 75 ~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~k 106 (112)
+|+..|.|.+|||+|+++||.+|+|.|..+.+
T Consensus 82 hLFevNdkskGGSFYLQSKVfRAkErld~El~ 113 (132)
T KOG3442|consen 82 HLFEVNDKSKGGSFYLQSKVFRAKERLDEELK 113 (132)
T ss_pred HHHhccCcccCcceeehHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998765
No 5
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.4e-17 Score=132.00 Aligned_cols=60 Identities=30% Similarity=0.432 Sum_probs=55.2
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 033745 49 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 49 m~~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~g-s---~~~~~~i~~Ay~~L~~~~kr~ 108 (112)
|...+.|+||||+.++|.+|||++||+|+++||||+|. + .++|++|++|||+|++++||+
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa 64 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRA 64 (371)
T ss_pred CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 44567899999999999999999999999999999987 4 489999999999999999986
No 6
>PHA03102 Small T antigen; Reviewed
Probab=99.66 E-value=2e-16 Score=112.50 Aligned_cols=60 Identities=22% Similarity=0.268 Sum_probs=56.8
Q ss_pred CHHHHHHHhCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcccccCCC
Q 033745 50 TRREAALILGVREST--PTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSN 109 (112)
Q Consensus 50 ~~~ea~~iLgl~~~~--~~~eik~~yr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~kr~~ 109 (112)
..++++++|||++++ |.++||++||++++++|||+||+++++++||+||++|.++.+|..
T Consensus 3 e~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~ 64 (153)
T PHA03102 3 ESKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLR 64 (153)
T ss_pred hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhcc
Confidence 468999999999999 999999999999999999999999999999999999999988764
No 7
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.64 E-value=3.3e-16 Score=126.35 Aligned_cols=64 Identities=20% Similarity=0.340 Sum_probs=59.3
Q ss_pred CCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcccccCC
Q 033745 45 FQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 45 ~~~~m~~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~kr~ 108 (112)
....|...++|++|||++++|.+|||++||+|++++|||++++.+.|++|++||++|.++.+|+
T Consensus 21 ~~~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~ 84 (421)
T PTZ00037 21 RKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRK 84 (421)
T ss_pred ccccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHH
Confidence 3455667899999999999999999999999999999999999999999999999999999884
No 8
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=6.3e-16 Score=120.71 Aligned_cols=60 Identities=23% Similarity=0.371 Sum_probs=54.9
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-H---HHHHHHHHHHHHhcccccCC
Q 033745 49 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-H---YLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 49 m~~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~gs-~---~~~~~i~~Ay~~L~~~~kr~ 108 (112)
.+.++.|+||||+.+++..|||++||+|++++|||||.+ + +.|++||.||++|+++.+|.
T Consensus 13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk 76 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRK 76 (336)
T ss_pred hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 345788999999999999999999999999999999874 3 78999999999999999885
No 9
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.61 E-value=2.2e-15 Score=90.24 Aligned_cols=53 Identities=26% Similarity=0.395 Sum_probs=49.0
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-----CHHHHHHHHHHHHHhcccc
Q 033745 53 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-----SHYLASKINEAKDIMLRRT 105 (112)
Q Consensus 53 ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~g-----s~~~~~~i~~Ay~~L~~~~ 105 (112)
++|++|||+++++.++|+++|+++++.+|||+++ ..+.+.+|++||++|.++.
T Consensus 2 ~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 5799999999999999999999999999999987 3588999999999999874
No 10
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.58 E-value=4.7e-15 Score=87.24 Aligned_cols=51 Identities=29% Similarity=0.414 Sum_probs=47.1
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcc
Q 033745 53 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLR 103 (112)
Q Consensus 53 ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~ 103 (112)
++|++|||+++++.++|+++|++|++++|||++++ .+.+.+|++||++|.+
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 37999999999999999999999999999999874 5889999999999974
No 11
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=2.6e-15 Score=119.40 Aligned_cols=60 Identities=30% Similarity=0.520 Sum_probs=54.3
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033745 49 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 49 m~~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~kr~ 108 (112)
|+..+.|++|||+++++.+|||++||+|++++|||++.+ .+.|++|++||++|.++.||+
T Consensus 1 m~~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~ 63 (372)
T PRK14296 1 MKKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRK 63 (372)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhh
Confidence 445688999999999999999999999999999999753 478999999999999999884
No 12
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.56 E-value=8.7e-15 Score=88.95 Aligned_cols=56 Identities=30% Similarity=0.439 Sum_probs=51.1
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCC-CCH----HHHHHHHHHHHHhcccccCC
Q 033745 53 EAALILGVRESTPTEKVKEAHRRVMVANHPDAG-GSH----YLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 53 ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~-gs~----~~~~~i~~Ay~~L~~~~kr~ 108 (112)
++|+||||+++++.++|+++|+++++.+|||++ ++. +.+..|++||++|.++.+|.
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~ 61 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRR 61 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHH
Confidence 579999999999999999999999999999994 455 78999999999999988764
No 13
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=1.2e-14 Score=115.43 Aligned_cols=57 Identities=25% Similarity=0.303 Sum_probs=52.1
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 033745 52 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 52 ~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~g-s---~~~~~~i~~Ay~~L~~~~kr~ 108 (112)
.+.|+||||++++|.+|||++||+|+++||||++. + .++|++|++||++|.++.+|+
T Consensus 3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~ 63 (369)
T PRK14288 3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRA 63 (369)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHH
Confidence 46799999999999999999999999999999976 3 378999999999999999874
No 14
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=1.3e-14 Score=115.36 Aligned_cols=60 Identities=30% Similarity=0.389 Sum_probs=54.0
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 033745 49 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 49 m~~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~g-s---~~~~~~i~~Ay~~L~~~~kr~ 108 (112)
|+..+.|++|||+++++.+|||++||+|++++|||++. + .++|++|++||++|.++.+|.
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~ 64 (372)
T PRK14286 1 MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQ 64 (372)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHH
Confidence 44468999999999999999999999999999999975 2 379999999999999998874
No 15
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=1.8e-14 Score=115.27 Aligned_cols=58 Identities=26% Similarity=0.359 Sum_probs=53.4
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 033745 51 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 51 ~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~g-s---~~~~~~i~~Ay~~L~~~~kr~ 108 (112)
..+.|+||||+++++.+|||++||+|++++|||+++ + .+.|++|++||++|.++.||+
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~ 69 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRK 69 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhh
Confidence 368899999999999999999999999999999976 3 388999999999999999884
No 16
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=1.6e-14 Score=111.39 Aligned_cols=59 Identities=27% Similarity=0.399 Sum_probs=53.2
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccC
Q 033745 49 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKG 107 (112)
Q Consensus 49 m~~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~kr 107 (112)
|+..+.|+||||++++|.+|||++||+|++++|||++++ .+++++|++||++|.++.+|
T Consensus 1 m~~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr 62 (291)
T PRK14299 1 MAYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKR 62 (291)
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHH
Confidence 444688999999999999999999999999999999864 37899999999999998776
No 17
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.50 E-value=2e-14 Score=114.20 Aligned_cols=59 Identities=25% Similarity=0.385 Sum_probs=53.3
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033745 50 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 50 ~~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~kr~ 108 (112)
...++|++|||+++++.+|||++||+|++++|||++.+ .+.|++|++||++|.++.+|+
T Consensus 2 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~ 63 (371)
T PRK14287 2 SKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKA 63 (371)
T ss_pred CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHH
Confidence 34578999999999999999999999999999999864 368999999999999998874
No 18
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=2.6e-14 Score=113.41 Aligned_cols=60 Identities=25% Similarity=0.356 Sum_probs=53.7
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhcccccCC
Q 033745 49 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-----HYLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 49 m~~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~gs-----~~~~~~i~~Ay~~L~~~~kr~ 108 (112)
|...+.|+||||+++++.+|||++||+|++++|||++.. .++|++|++||++|.++.+|+
T Consensus 1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~ 65 (369)
T PRK14282 1 REKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRA 65 (369)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHH
Confidence 344578999999999999999999999999999999752 378999999999999999884
No 19
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.48 E-value=3.5e-14 Score=113.15 Aligned_cols=59 Identities=22% Similarity=0.285 Sum_probs=53.6
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033745 50 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 50 ~~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~kr~ 108 (112)
...+.|+||||+++++.+||+++||+|++++|||++.+ .+.|++|++||++|.++.+|+
T Consensus 2 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~ 63 (380)
T PRK14276 2 NNTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRA 63 (380)
T ss_pred CCCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhh
Confidence 34578999999999999999999999999999999764 478999999999999999874
No 20
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=4.6e-14 Score=112.32 Aligned_cols=58 Identities=24% Similarity=0.366 Sum_probs=53.1
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcccccCC
Q 033745 51 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 51 ~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~g---s~~~~~~i~~Ay~~L~~~~kr~ 108 (112)
..+.|++|||+++++.+|||++||+|++++|||++. ..+.|++|++||++|.++.+|.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~ 64 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQ 64 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHH
Confidence 457899999999999999999999999999999975 3579999999999999998873
No 21
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=4.6e-14 Score=112.31 Aligned_cols=60 Identities=27% Similarity=0.416 Sum_probs=53.8
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033745 49 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 49 m~~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~kr~ 108 (112)
|...++|+||||+++++.+|||++||+|++++|||++.+ .+.|++|++||++|.++.+|+
T Consensus 1 ~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~ 63 (376)
T PRK14280 1 MAKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRA 63 (376)
T ss_pred CCCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHH
Confidence 334688999999999999999999999999999999753 489999999999999998874
No 22
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=6.5e-14 Score=111.10 Aligned_cols=57 Identities=23% Similarity=0.457 Sum_probs=52.0
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 033745 52 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 52 ~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~~kr~ 108 (112)
.+.|+||||+++++.+|||++||+|++++|||++++ .++|++|++||++|.++.+|.
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~ 63 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRA 63 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhH
Confidence 478999999999999999999999999999999763 278999999999999998874
No 23
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=5.8e-14 Score=111.83 Aligned_cols=58 Identities=26% Similarity=0.378 Sum_probs=52.9
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033745 51 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 51 ~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~kr~ 108 (112)
..+.|+||||+++++.+||+++||+|++++|||++++ .+.|++|++||++|.++.+|+
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~ 64 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRA 64 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhh
Confidence 3589999999999999999999999999999999864 378999999999999998874
No 24
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=4.4e-14 Score=110.98 Aligned_cols=56 Identities=25% Similarity=0.350 Sum_probs=52.0
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHhcccccCC
Q 033745 53 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH-YLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 53 ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~gs~-~~~~~i~~Ay~~L~~~~kr~ 108 (112)
..|.||||+++++.+|||++||+|.++||||||++. ++|++|.+|||+|+++.+|.
T Consensus 5 ~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~ 61 (337)
T KOG0712|consen 5 KLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKRE 61 (337)
T ss_pred ccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHH
Confidence 358999999999999999999999999999999865 99999999999999998873
No 25
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=5.4e-14 Score=111.57 Aligned_cols=60 Identities=25% Similarity=0.423 Sum_probs=53.5
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CH---HHHHHHHHHHHHhcccccCC
Q 033745 49 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-SH---YLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 49 m~~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~g-s~---~~~~~i~~Ay~~L~~~~kr~ 108 (112)
|+..++|+||||+++++.+|||++||+|++++|||+++ +. +.|++|++||++|.++.+|.
T Consensus 1 ~~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~ 64 (371)
T PRK10767 1 MAKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRA 64 (371)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhh
Confidence 34468999999999999999999999999999999975 32 68899999999999988874
No 26
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=4.8e-14 Score=111.78 Aligned_cols=60 Identities=27% Similarity=0.416 Sum_probs=54.0
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 033745 49 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 49 m~~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~~kr~ 108 (112)
|+..+.|+||||+++++.+||+++||+|++++|||++++ .+.|++|++||++|.++.+|+
T Consensus 1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~ 64 (366)
T PRK14294 1 MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRG 64 (366)
T ss_pred CCCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHH
Confidence 455689999999999999999999999999999999863 378999999999999998874
No 27
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=6.6e-14 Score=111.36 Aligned_cols=59 Identities=22% Similarity=0.376 Sum_probs=53.3
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 033745 50 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 50 ~~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~~kr~ 108 (112)
+..++|+||||+++++.++||++||+|++++|||++++ .+.|++|++||++|.++.+|+
T Consensus 2 ~~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~ 64 (373)
T PRK14301 2 SQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRA 64 (373)
T ss_pred CCCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhh
Confidence 34678999999999999999999999999999999763 268999999999999999874
No 28
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=8.1e-14 Score=111.00 Aligned_cols=58 Identities=22% Similarity=0.407 Sum_probs=53.0
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 033745 51 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 51 ~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~~kr~ 108 (112)
..+.|++|||+++++.+||+++||+|++++|||++.+ .+.|++|++||++|.++.+|+
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~ 64 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKA 64 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhC
Confidence 3578999999999999999999999999999999753 378999999999999999885
No 29
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.45 E-value=8.1e-14 Score=108.16 Aligned_cols=60 Identities=22% Similarity=0.353 Sum_probs=53.7
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcccccCC
Q 033745 49 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 49 m~~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~g---s~~~~~~i~~Ay~~L~~~~kr~ 108 (112)
|+..+.|++|||+++++.+|||++||+|++++|||++. ..+.|++|++||++|.++.+|+
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~ 63 (306)
T PRK10266 1 MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRA 63 (306)
T ss_pred CCcCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHH
Confidence 44467899999999999999999999999999999975 3578999999999999988773
No 30
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.45 E-value=9.6e-14 Score=111.00 Aligned_cols=57 Identities=26% Similarity=0.388 Sum_probs=52.2
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 033745 52 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 52 ~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~g-s---~~~~~~i~~Ay~~L~~~~kr~ 108 (112)
.+.|+||||+++++.+|||++||+|++++|||++. + .++|++|++||++|.++.+|+
T Consensus 9 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~ 69 (389)
T PRK14295 9 KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRK 69 (389)
T ss_pred cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHH
Confidence 58899999999999999999999999999999975 2 378999999999999998774
No 31
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.45 E-value=7.1e-14 Score=111.35 Aligned_cols=57 Identities=23% Similarity=0.305 Sum_probs=52.4
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHHhcccccCC
Q 033745 52 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH---YLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 52 ~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~gs~---~~~~~i~~Ay~~L~~~~kr~ 108 (112)
.+.|+||||+++++.+|||++||+|++++|||+++++ +.|++|++||++|.++.+|.
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~ 62 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRR 62 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhh
Confidence 4689999999999999999999999999999998864 57999999999999998874
No 32
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.44 E-value=3.3e-13 Score=103.31 Aligned_cols=58 Identities=31% Similarity=0.426 Sum_probs=51.8
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCC---C-CH-------HHHHHHHHHHHHhccc
Q 033745 47 PVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAG---G-SH-------YLASKINEAKDIMLRR 104 (112)
Q Consensus 47 ~~m~~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~---g-s~-------~~~~~i~~Ay~~L~~~ 104 (112)
..++.++||++||+++++|.++||++||+|+++||||+. | ++ +++++|++||++|++.
T Consensus 195 ~~~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 195 RGPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred CCCcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 468899999999999999999999999999999999993 2 22 6899999999999864
No 33
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.44 E-value=1.6e-13 Score=109.97 Aligned_cols=57 Identities=26% Similarity=0.417 Sum_probs=52.2
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 033745 52 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 52 ~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~~kr~ 108 (112)
.+.|+||||+++++.+|||++||+|++++|||++++ .+.|++|++||++|.++.+|+
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~ 63 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRR 63 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhh
Confidence 478999999999999999999999999999999863 378999999999999988764
No 34
>PHA02624 large T antigen; Provisional
Probab=99.44 E-value=2.5e-13 Score=113.59 Aligned_cols=60 Identities=20% Similarity=0.273 Sum_probs=56.8
Q ss_pred HHHHHHHhCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcccccCCCC
Q 033745 51 RREAALILGVREST--PTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNS 110 (112)
Q Consensus 51 ~~ea~~iLgl~~~~--~~~eik~~yr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~kr~~~ 110 (112)
.+++|++|||++++ +.++||++||++++++|||+||+++.+++||+||++|.++.++...
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 57899999999999 9999999999999999999999999999999999999998887664
No 35
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=1.4e-13 Score=109.83 Aligned_cols=57 Identities=32% Similarity=0.413 Sum_probs=52.0
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 033745 52 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 52 ~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~g-s---~~~~~~i~~Ay~~L~~~~kr~ 108 (112)
.+.|+||||+++++.+||+++||+|++++|||+++ + .+.|++|++||++|.++.+|.
T Consensus 5 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~ 65 (386)
T PRK14277 5 KDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRA 65 (386)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHH
Confidence 57899999999999999999999999999999975 2 368999999999999998774
No 36
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.41 E-value=2.9e-13 Score=107.94 Aligned_cols=57 Identities=30% Similarity=0.384 Sum_probs=52.3
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033745 52 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 52 ~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~kr~ 108 (112)
.+.|++|||+++++.++||++||+|++++|||++++ .++|++|++||++|.++.+|.
T Consensus 3 ~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~ 62 (382)
T PRK14291 3 KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRK 62 (382)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHH
Confidence 468999999999999999999999999999999864 478999999999999998874
No 37
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.41 E-value=2.6e-13 Score=107.89 Aligned_cols=57 Identities=25% Similarity=0.347 Sum_probs=52.0
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033745 52 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 52 ~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~kr~ 108 (112)
.+.|+||||++++|.+||+++||+|++++|||++.+ .+.+++|++||++|.++.+|+
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~ 62 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRA 62 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhh
Confidence 478999999999999999999999999999999753 478999999999999988774
No 38
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=4.7e-13 Score=99.50 Aligned_cols=59 Identities=22% Similarity=0.361 Sum_probs=53.3
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCC----CCCHHHHHHHHHHHHHhcccccC
Q 033745 49 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDA----GGSHYLASKINEAKDIMLRRTKG 107 (112)
Q Consensus 49 m~~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk----~gs~~~~~~i~~Ay~~L~~~~kr 107 (112)
+..-++++||||+++++..|||++||+|..++|||| +++.+.+..|+.||+.|.+...|
T Consensus 96 ~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sr 158 (230)
T KOG0721|consen 96 RQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSR 158 (230)
T ss_pred hhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhH
Confidence 344567999999999999999999999999999999 56788999999999999998766
No 39
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=7.3e-13 Score=107.16 Aligned_cols=59 Identities=19% Similarity=0.313 Sum_probs=54.4
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHHHhcccccCC
Q 033745 50 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH-----YLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 50 ~~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~gs~-----~~~~~i~~Ay~~L~~~~kr~ 108 (112)
.....|++|||+.+++..+|+..||+|++++|||++++- ++|+.|+.||++|.+++.|+
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~ 69 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERA 69 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhh
Confidence 457899999999999999999999999999999998753 78999999999999998875
No 40
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.38 E-value=4.9e-13 Score=106.92 Aligned_cols=56 Identities=27% Similarity=0.414 Sum_probs=51.1
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 033745 53 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 53 ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~~kr~ 108 (112)
+.|+||||+++++.+|||++||+|++++|||++.+ .++|++|++||++|.++.+|.
T Consensus 2 d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~ 61 (391)
T PRK14284 2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRE 61 (391)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHH
Confidence 57999999999999999999999999999999763 378999999999999988763
No 41
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.38 E-value=7.8e-13 Score=104.97 Aligned_cols=56 Identities=25% Similarity=0.383 Sum_probs=51.8
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033745 53 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 53 ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~kr~ 108 (112)
+.|+||||+++++.++|+++|++|++++|||++++ .+++++|++||++|.++.+|+
T Consensus 3 d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~ 61 (371)
T PRK14292 3 DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRA 61 (371)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhh
Confidence 57999999999999999999999999999999875 478999999999999998874
No 42
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.38 E-value=6e-13 Score=104.93 Aligned_cols=55 Identities=29% Similarity=0.383 Sum_probs=50.8
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033745 54 AALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 54 a~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~kr~ 108 (112)
.|++|||+++++.+|||++|++|++++|||++.+ .+.|++|++||++|.++.+|.
T Consensus 2 ~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~ 59 (354)
T TIGR02349 2 YYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRA 59 (354)
T ss_pred hHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHH
Confidence 6999999999999999999999999999999853 478999999999999998774
No 43
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.37 E-value=5.6e-13 Score=106.34 Aligned_cols=59 Identities=25% Similarity=0.383 Sum_probs=53.3
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 033745 50 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 50 ~~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~g-s---~~~~~~i~~Ay~~L~~~~kr~ 108 (112)
...++|++|||+++++.+||+++||+|++++|||++. + .+.|++|++||++|.++.+|+
T Consensus 3 ~~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 65 (386)
T PRK14289 3 EKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRS 65 (386)
T ss_pred ccCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHH
Confidence 3468999999999999999999999999999999975 3 378999999999999998875
No 44
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.6e-12 Score=99.20 Aligned_cols=59 Identities=27% Similarity=0.405 Sum_probs=54.1
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 033745 50 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 50 ~~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~~kr~ 108 (112)
...+-|.+|||+.+++.++||++||+|++++|||++|+ +.+|..||.||++|.++.+|.
T Consensus 29 ~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~ 91 (279)
T KOG0716|consen 29 IRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRN 91 (279)
T ss_pred chhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhh
Confidence 35778999999999999999999999999999999875 389999999999999999884
No 45
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.36 E-value=8.7e-13 Score=104.60 Aligned_cols=57 Identities=26% Similarity=0.344 Sum_probs=51.7
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhcccccCC
Q 033745 52 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-----HYLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 52 ~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~gs-----~~~~~~i~~Ay~~L~~~~kr~ 108 (112)
.+.|+||||+++++.+||+++||+|++++|||++++ .++|++|++||++|.++.+|.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~ 64 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRR 64 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhh
Confidence 467999999999999999999999999999999753 278999999999999998874
No 46
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1e-12 Score=101.62 Aligned_cols=62 Identities=23% Similarity=0.376 Sum_probs=55.2
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033745 47 PVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 47 ~~m~~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~kr~ 108 (112)
..++.+++|+|||++.+++..|||.+|++|.+++|||.+.+ ..+|++|.+|||+|.++.+|.
T Consensus 38 ~~~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~ 102 (288)
T KOG0715|consen 38 RIISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQ 102 (288)
T ss_pred ccCCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHH
Confidence 44555589999999999999999999999999999998653 488999999999999998874
No 47
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.33 E-value=1.5e-12 Score=103.53 Aligned_cols=57 Identities=25% Similarity=0.329 Sum_probs=52.0
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033745 52 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 52 ~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~kr~ 108 (112)
.+.|+||||+++++.+||+++||+|++++|||++.+ .+.|+.|++||++|.++.+|+
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~ 62 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRA 62 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHH
Confidence 367999999999999999999999999999999753 488999999999999998874
No 48
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=6.5e-12 Score=101.98 Aligned_cols=59 Identities=22% Similarity=0.273 Sum_probs=54.1
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHHhcccccCC
Q 033745 50 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH-------YLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 50 ~~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~gs~-------~~~~~i~~Ay~~L~~~~kr~ 108 (112)
...|.|.+|||+++++.+||+++||++.+.+||||.-|+ +.|++|.+|||+|.|+++|+
T Consensus 7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRa 72 (546)
T KOG0718|consen 7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRA 72 (546)
T ss_pred chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 446899999999999999999999999999999997654 68999999999999999985
No 49
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=5.7e-12 Score=97.79 Aligned_cols=58 Identities=19% Similarity=0.310 Sum_probs=53.0
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CH---HHHHHHHHHHHHhcccccCC
Q 033745 51 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-SH---YLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 51 ~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~g-s~---~~~~~i~~Ay~~L~~~~kr~ 108 (112)
..|.|.|||++++++..+|+++|+...+++|||||+ +| +.|+.+.+||++|.++..|+
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~ 65 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRA 65 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHH
Confidence 468999999999999999999999999999999986 44 78999999999999988774
No 50
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=2.1e-11 Score=86.83 Aligned_cols=58 Identities=28% Similarity=0.346 Sum_probs=52.7
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CH----HHHHHHHHHHHHhcccccCC
Q 033745 51 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-SH----YLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 51 ~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~g-s~----~~~~~i~~Ay~~L~~~~kr~ 108 (112)
..+.|+||||.++++.+||+++||++.+++|||+++ ++ +.++.|++||++|.++.+|.
T Consensus 5 ~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~ 67 (237)
T COG2214 5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRA 67 (237)
T ss_pred hhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHH
Confidence 467899999999999999999999999999999976 33 88999999999999988774
No 51
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.19 E-value=3.3e-11 Score=86.98 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=48.5
Q ss_pred HHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCCC--CH-------HHHHHHHHHHHHhcccccCC
Q 033745 53 EAALILGVRES--TPTEKVKEAHRRVMVANHPDAGG--SH-------YLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 53 ea~~iLgl~~~--~~~~eik~~yr~l~~~~HPDk~g--s~-------~~~~~i~~Ay~~L~~~~kr~ 108 (112)
+.|++|||++. ++..+|+++|++|.+++|||+.. ++ +.++.||+||++|.++.+|+
T Consensus 2 ~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra 68 (171)
T PRK05014 2 DYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRA 68 (171)
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHH
Confidence 46899999996 78899999999999999999943 22 35678999999999999886
No 52
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.19 E-value=2e-11 Score=106.01 Aligned_cols=60 Identities=22% Similarity=0.139 Sum_probs=54.2
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033745 49 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 49 m~~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~kr~ 108 (112)
+...+.|+||||+++++..+||++||+|++++|||++++ ...|++|++||++|.++.+|.
T Consensus 570 ~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk 632 (1136)
T PTZ00341 570 IPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKK 632 (1136)
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHH
Confidence 344688999999999999999999999999999999763 378999999999999999885
No 53
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.18 E-value=3.3e-11 Score=86.67 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=48.9
Q ss_pred HHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHHhcccccCC
Q 033745 53 EAALILGVRES--TPTEKVKEAHRRVMVANHPDAGGSH-------YLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 53 ea~~iLgl~~~--~~~~eik~~yr~l~~~~HPDk~gs~-------~~~~~i~~Ay~~L~~~~kr~ 108 (112)
+.|++|||++. ++..+|+++|++|.+++|||+..+. +.+..||+||++|.++.+|+
T Consensus 3 ~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra 67 (166)
T PRK01356 3 NYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRA 67 (166)
T ss_pred CHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 46899999997 7899999999999999999996543 23579999999999998875
No 54
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.17 E-value=3.3e-11 Score=102.69 Aligned_cols=57 Identities=26% Similarity=0.462 Sum_probs=51.8
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHHhcccccCC
Q 033745 52 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH---YLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 52 ~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~gs~---~~~~~i~~Ay~~L~~~~kr~ 108 (112)
.++|+||||+++++.++||++||+|++++|||++++. .+|++|++||++|.++.+|+
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa 61 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRA 61 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHH
Confidence 3679999999999999999999999999999998653 57899999999999988875
No 55
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.16 E-value=4.7e-11 Score=86.43 Aligned_cols=58 Identities=14% Similarity=0.159 Sum_probs=50.1
Q ss_pred HHHHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCCC--CH-------HHHHHHHHHHHHhcccccCC
Q 033745 51 RREAALILGVRES--TPTEKVKEAHRRVMVANHPDAGG--SH-------YLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 51 ~~ea~~iLgl~~~--~~~~eik~~yr~l~~~~HPDk~g--s~-------~~~~~i~~Ay~~L~~~~kr~ 108 (112)
....+++|||++. ++..+|+++|++|.+++|||+.. +. ..+..||+||++|+++.+|+
T Consensus 3 ~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra 71 (173)
T PRK00294 3 TPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRA 71 (173)
T ss_pred CCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhH
Confidence 3567999999998 78999999999999999999953 21 45788999999999999886
No 56
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.12 E-value=8.9e-11 Score=85.18 Aligned_cols=57 Identities=21% Similarity=0.239 Sum_probs=49.3
Q ss_pred HHHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCCC--CH-------HHHHHHHHHHHHhcccccCC
Q 033745 52 REAALILGVRES--TPTEKVKEAHRRVMVANHPDAGG--SH-------YLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 52 ~ea~~iLgl~~~--~~~~eik~~yr~l~~~~HPDk~g--s~-------~~~~~i~~Ay~~L~~~~kr~ 108 (112)
.+.|++|||++. ++..+|+++|++|.+++|||+.. +. +.++.||.||++|.++.+|+
T Consensus 6 ~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra 73 (176)
T PRK03578 6 DDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRA 73 (176)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHH
Confidence 578999999996 78999999999999999999953 22 23578999999999999886
No 57
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.6e-10 Score=87.11 Aligned_cols=56 Identities=18% Similarity=0.323 Sum_probs=51.7
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC------CHHHHHHHHHHHHHhcccccCC
Q 033745 53 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGG------SHYLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 53 ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~g------s~~~~~~i~~Ay~~L~~~~kr~ 108 (112)
+.|++|||..+++..+|+++|++|.+++|||++. ..+.|+.|+.||++|.++.+|+
T Consensus 15 d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~ 76 (264)
T KOG0719|consen 15 DLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRA 76 (264)
T ss_pred CHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 7899999999999999999999999999999974 3478999999999999988874
No 58
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.2e-09 Score=95.91 Aligned_cols=73 Identities=16% Similarity=0.259 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhCCCchhhhhhhhCCCCCCCCHHHHHHHhCCCCC----CCHHHHHHHHHHHHHHhCCCCCCC-HHHHH
Q 033745 18 GKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRES----TPTEKVKEAHRRVMVANHPDAGGS-HYLAS 92 (112)
Q Consensus 18 ~r~~~~A~~~~~~~~~~~~~~~~~~~~~~~~m~~~ea~~iLgl~~~----~~~~eik~~yr~l~~~~HPDk~gs-~~~~~ 92 (112)
.|..+.+|+...... ...|+.++||+||+++-+ .++++||+.|++|..+||||||+. -++|.
T Consensus 1260 L~~~L~~W~~ElekK-------------P~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe 1326 (2235)
T KOG1789|consen 1260 LRCCLATWYNELEKK-------------PATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFE 1326 (2235)
T ss_pred HHHHHHHHHHHHhcC-------------CCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHH
Confidence 355566666655433 345899999999999865 466899999999999999999985 58999
Q ss_pred HHHHHHHHhcc
Q 033745 93 KINEAKDIMLR 103 (112)
Q Consensus 93 ~i~~Ay~~L~~ 103 (112)
++|.|||+|+.
T Consensus 1327 ~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1327 RVNKAYELLSS 1337 (2235)
T ss_pred HHHHHHHHHHH
Confidence 99999999983
No 59
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.93 E-value=1.7e-09 Score=78.34 Aligned_cols=56 Identities=14% Similarity=0.130 Sum_probs=48.9
Q ss_pred HHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCC--CCH-------HHHHHHHHHHHHhcccccCC
Q 033745 53 EAALILGVRES--TPTEKVKEAHRRVMVANHPDAG--GSH-------YLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 53 ea~~iLgl~~~--~~~~eik~~yr~l~~~~HPDk~--gs~-------~~~~~i~~Ay~~L~~~~kr~ 108 (112)
+.+++|||++. ++...++++|+.|.+.+|||+- .++ +....||+||.+|+++.+|+
T Consensus 3 nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA 69 (173)
T PRK01773 3 NPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRA 69 (173)
T ss_pred ChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHH
Confidence 46899999997 8999999999999999999993 232 45688999999999999886
No 60
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=9e-10 Score=89.35 Aligned_cols=58 Identities=19% Similarity=0.176 Sum_probs=53.2
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHHhcccccCC
Q 033745 51 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH---YLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 51 ~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~gs~---~~~~~i~~Ay~~L~~~~kr~ 108 (112)
..+||.+|||+++++.++||+.||+++...|||||-.+ |.|+++..|||+|.+..+|.
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~ 294 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRK 294 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhh
Confidence 34699999999999999999999999999999998654 88999999999999998875
No 61
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=9.9e-10 Score=84.00 Aligned_cols=58 Identities=22% Similarity=0.318 Sum_probs=52.3
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033745 51 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 51 ~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~kr~ 108 (112)
.++.|++||+..+++..||.++||+|.+++|||++.+ ..+|.+|..||++|.++..|.
T Consensus 32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt 92 (329)
T KOG0722|consen 32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRT 92 (329)
T ss_pred chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHH
Confidence 4889999999999999999999999999999999754 368999999999999887654
No 62
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.74 E-value=1.2e-08 Score=81.42 Aligned_cols=59 Identities=24% Similarity=0.326 Sum_probs=52.8
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHHhcccccCC
Q 033745 50 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH-------YLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 50 ~~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~gs~-------~~~~~i~~Ay~~L~~~~kr~ 108 (112)
..++.|+|||+..++++.||.++||+|..++|||.--+. .+|..|..|+|+|.++.+|+
T Consensus 392 ~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRr 457 (504)
T KOG0624|consen 392 GKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRR 457 (504)
T ss_pred ccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHh
Confidence 457899999999999999999999999999999985554 36777999999999999886
No 63
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.71 E-value=2.1e-08 Score=71.44 Aligned_cols=45 Identities=18% Similarity=0.159 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCCC--CC-------HHHHHHHHHHHHHhcccccCC
Q 033745 64 TPTEKVKEAHRRVMVANHPDAG--GS-------HYLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 64 ~~~~eik~~yr~l~~~~HPDk~--gs-------~~~~~~i~~Ay~~L~~~~kr~ 108 (112)
++..+|+++|++|.+++|||+. .+ ...++.||+||++|.++.+|+
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra 56 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRA 56 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhH
Confidence 5789999999999999999983 22 256789999999999999886
No 64
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=2.5e-08 Score=80.60 Aligned_cols=59 Identities=27% Similarity=0.449 Sum_probs=52.9
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCC-CC----HHHHHHHHHHHHHhcccccCCC
Q 033745 51 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAG-GS----HYLASKINEAKDIMLRRTKGSN 109 (112)
Q Consensus 51 ~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~-gs----~~~~~~i~~Ay~~L~~~~kr~~ 109 (112)
..++|+|||+..+++..||+++||++.+.||||++ |+ ..+|.++-+||.+|.++.+|.+
T Consensus 372 Rkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r 435 (486)
T KOG0550|consen 372 RKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVR 435 (486)
T ss_pred hhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhh
Confidence 46899999999999999999999999999999996 44 2579999999999999988764
No 65
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=3e-08 Score=73.62 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=47.2
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-H----HHHHHHHHHHHhcccc
Q 033745 52 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH-Y----LASKINEAKDIMLRRT 105 (112)
Q Consensus 52 ~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~gs~-~----~~~~i~~Ay~~L~~~~ 105 (112)
-.+|++|.|+|.++.++|+++||+|....|||+|.+. + .|--|..||..|.++.
T Consensus 53 LNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~ 111 (250)
T KOG1150|consen 53 LNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDK 111 (250)
T ss_pred cChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHH
Confidence 3579999999999999999999999999999999865 3 3555889999998876
No 66
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=2.8e-08 Score=73.93 Aligned_cols=57 Identities=28% Similarity=0.397 Sum_probs=50.0
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHHHhcccccCC
Q 033745 52 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH-----YLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 52 ~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~gs~-----~~~~~i~~Ay~~L~~~~kr~ 108 (112)
.++|+|||+...++.++|+++|+++++++|||++.+. ..+.+|.+||++|.++.+|.
T Consensus 3 ~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~ 64 (306)
T KOG0714|consen 3 KDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRK 64 (306)
T ss_pred ccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhh
Confidence 4689999999988888999999999999999997654 34778889999999988875
No 67
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.55 E-value=5e-08 Score=79.65 Aligned_cols=55 Identities=20% Similarity=0.322 Sum_probs=48.4
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHHhcccccC
Q 033745 53 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---------HYLASKINEAKDIMLRRTKG 107 (112)
Q Consensus 53 ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~gs---------~~~~~~i~~Ay~~L~~~~kr 107 (112)
++|+|||++.+.+..+||++||+|..++||||-.. .+....|+.||+.|.+...|
T Consensus 99 DPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~r 162 (610)
T COG5407 99 DPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRR 162 (610)
T ss_pred ChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 35999999999999999999999999999999543 26678899999999987665
No 68
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=6.4e-07 Score=68.14 Aligned_cols=52 Identities=31% Similarity=0.409 Sum_probs=47.4
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHH-Hhc
Q 033745 51 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG---SHYLASKINEAKD-IML 102 (112)
Q Consensus 51 ~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~g---s~~~~~~i~~Ay~-~L~ 102 (112)
..|.+.|||++++++.++++.+|-+|++++|||.|. |.+.|.+|.+||. +|.
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq 101 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQ 101 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999975 6789999999998 443
No 69
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=8.6e-05 Score=57.76 Aligned_cols=57 Identities=21% Similarity=0.373 Sum_probs=49.3
Q ss_pred HHHHHHhCCCCC---CCHHHHHHHHHHHHHHhCCCC---CC---CHHHHHHHHHHHHHhcccccCC
Q 033745 52 REAALILGVRES---TPTEKVKEAHRRVMVANHPDA---GG---SHYLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 52 ~ea~~iLgl~~~---~~~~eik~~yr~l~~~~HPDk---~g---s~~~~~~i~~Ay~~L~~~~kr~ 108 (112)
.+-|.+|||+.- ++++.|.+++++.+.+||||+ || ..+.|.-|..||++|.++.+|.
T Consensus 43 ~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~ 108 (379)
T COG5269 43 VDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRL 108 (379)
T ss_pred hhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHh
Confidence 567999999974 788899999999999999998 34 4688899999999999987764
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=6e-05 Score=54.33 Aligned_cols=50 Identities=28% Similarity=0.441 Sum_probs=42.9
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCC---CCCH--------HHHHHHHHHHHHh
Q 033745 52 REAALILGVRESTPTEKVKEAHRRVMVANHPDA---GGSH--------YLASKINEAKDIM 101 (112)
Q Consensus 52 ~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk---~gs~--------~~~~~i~~Ay~~L 101 (112)
.+++.+||++...+..+|+++|++++..+|||+ .|.+ +.+++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 789999999999999999999999999999998 3433 5567788888754
No 71
>PF13446 RPT: A repeated domain in UCH-protein
Probab=97.13 E-value=0.0032 Score=37.84 Aligned_cols=47 Identities=26% Similarity=0.334 Sum_probs=37.3
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhc
Q 033745 49 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIML 102 (112)
Q Consensus 49 m~~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~ 102 (112)
|+.++||++||++++.+.+.|-..|+..+. ..| .......+|-.+|-
T Consensus 2 ~~~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-~~P------~~~~~~r~AL~~Ia 48 (62)
T PF13446_consen 2 MDVEEAYEILGIDEDTDDDFIISAFQSKVN-DDP------SQKDTLREALRVIA 48 (62)
T ss_pred CCHHHHHHHhCcCCCCCHHHHHHHHHHHHH-cCh------HhHHHHHHHHHHHH
Confidence 889999999999999999999999999988 223 34455566665554
No 72
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.00089 Score=48.01 Aligned_cols=59 Identities=22% Similarity=0.257 Sum_probs=48.9
Q ss_pred CHHHHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCCC-------C--HHHHHHHHHHHHHhcccccCC
Q 033745 50 TRREAALILGVRES--TPTEKVKEAHRRVMVANHPDAGG-------S--HYLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 50 ~~~ea~~iLgl~~~--~~~~eik~~yr~l~~~~HPDk~g-------s--~~~~~~i~~Ay~~L~~~~kr~ 108 (112)
+....+.+||.+.. .+++.+...|-...++.|||+-+ + .+...++|+||..|.++.+|+
T Consensus 6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA 75 (168)
T KOG3192|consen 6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARA 75 (168)
T ss_pred hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHH
Confidence 34678999988865 78888888999999999999832 2 256788999999999999886
No 73
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=96.48 E-value=0.0034 Score=51.64 Aligned_cols=37 Identities=32% Similarity=0.477 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCC-CC---CH---HHHHHHHHHHH
Q 033745 63 STPTEKVKEAHRRVMVANHPDA-GG---SH---YLASKINEAKD 99 (112)
Q Consensus 63 ~~~~~eik~~yr~l~~~~HPDk-~g---s~---~~~~~i~~Ay~ 99 (112)
-++.+.||++|||-++..|||| .+ +. |++.+|+.++.
T Consensus 399 LVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~ 442 (453)
T KOG0431|consen 399 LVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALS 442 (453)
T ss_pred ccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHH
Confidence 3799999999999999999999 23 22 55666655544
No 74
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=96.02 E-value=0.019 Score=42.38 Aligned_cols=39 Identities=23% Similarity=0.344 Sum_probs=35.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcc
Q 033745 61 RESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLR 103 (112)
Q Consensus 61 ~~~~~~~eik~~yr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~ 103 (112)
+++++.|||+++++++..+| +||.....+|..|||.|.-
T Consensus 1 S~~ASfeEIq~Arn~ll~~y----~gd~~~~~~IEaAYD~ILM 39 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQY----AGDEKSREAIEAAYDAILM 39 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHH
Confidence 46789999999999999999 7899999999999998764
No 75
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.017 Score=41.56 Aligned_cols=45 Identities=20% Similarity=0.195 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCH---------HHHHHHHHHHHHhcccccCC
Q 033745 64 TPTEKVKEAHRRVMVANHPDAGGSH---------YLASKINEAKDIMLRRTKGS 108 (112)
Q Consensus 64 ~~~~eik~~yr~l~~~~HPDk~gs~---------~~~~~i~~Ay~~L~~~~kr~ 108 (112)
.+.+.++..|+.+...+|||+.++. ..+..+|.||..|+++..|+
T Consensus 15 ~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra 68 (174)
T COG1076 15 IDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRA 68 (174)
T ss_pred HHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 3567789999999999999996532 35677999999999987764
No 76
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=82.85 E-value=1.9 Score=29.13 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCC
Q 033745 64 TPTEKVKEAHRRVMVANHPDAGG 86 (112)
Q Consensus 64 ~~~~eik~~yr~l~~~~HPDk~g 86 (112)
.+..+++.+-|...++.|||-=+
T Consensus 6 ~~~~~l~~aLr~Fy~~VHPDlF~ 28 (112)
T PF14687_consen 6 LSSPDLRSALRPFYFAVHPDLFG 28 (112)
T ss_pred hhhHHHHHHHHHHHHHhCCcccc
Confidence 56788999999999999999744
No 77
>PF03820 Mtc: Tricarboxylate carrier; InterPro: IPR004686 The MTC family consists of a limited number of homologues, all from eukaryotes. One member of the family has been functionally characterised as a tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism. The rest of the characterised proteins appear to be sideroflexins involved in iron transport.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016020 membrane
Probab=77.25 E-value=8.2 Score=30.49 Aligned_cols=67 Identities=22% Similarity=0.260 Sum_probs=49.2
Q ss_pred CCCCCCHHHHHHHh-----CCCC-CCCHHHHHHHHHHHHHHhCCCCCC--------CH---------------------H
Q 033745 45 FQPVMTRREAALIL-----GVRE-STPTEKVKEAHRRVMVANHPDAGG--------SH---------------------Y 89 (112)
Q Consensus 45 ~~~~m~~~ea~~iL-----gl~~-~~~~~eik~~yr~l~~~~HPDk~g--------s~---------------------~ 89 (112)
+...-+.++|.++| |-.+ +.+.+|+-++.+..--..|||.|. |. -
T Consensus 23 ~~S~~~l~~a~~ll~~~~~g~~~~~~~~~~lw~Ak~l~~Sa~HPDTge~i~~~fRmsa~vP~n~~i~~~mL~~~~s~~~~ 102 (308)
T PF03820_consen 23 FASEAELEEAKELLEDYRAGKVPPGLTDDELWKAKKLYDSAFHPDTGEKIPLPFRMSAFVPFNMPITGGMLTPYKSTPAV 102 (308)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhhcccCCCCCCccccccccccccccchHHHHHHhccCcchHHH
Confidence 33444678898888 3332 268999999999999999999742 10 2
Q ss_pred HH-HHHHHHHHHhcccccCCCCC
Q 033745 90 LA-SKINEAKDIMLRRTKGSNSA 111 (112)
Q Consensus 90 ~~-~~i~~Ay~~L~~~~kr~~~~ 111 (112)
.| |=+|+.|..+-++-.|.+|.
T Consensus 103 ifwQw~NQS~Na~vNy~Nrnas~ 125 (308)
T PF03820_consen 103 IFWQWVNQSYNAAVNYTNRNASS 125 (308)
T ss_pred HHHHHHHhHHHHHHhhhccCCCC
Confidence 23 44899999999998888764
No 78
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=74.18 E-value=20 Score=22.86 Aligned_cols=27 Identities=7% Similarity=0.096 Sum_probs=22.9
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHhC
Q 033745 55 ALILGVRESTPTEKVKEAHRRVMVANH 81 (112)
Q Consensus 55 ~~iLgl~~~~~~~eik~~yr~l~~~~H 81 (112)
.+++|+++.++..||+.+-++.+.+..
T Consensus 6 k~LfnfdPPAT~~EvrdAAlQfVRKlS 32 (88)
T COG5552 6 KELFNFDPPATPVEVRDAALQFVRKLS 32 (88)
T ss_pred HHHhCCCCCCCcHHHHHHHHHHHHHhc
Confidence 468999999999999999887777653
No 79
>KOG3767 consensus Sideroflexin [General function prediction only]
Probab=67.22 E-value=6.6 Score=31.29 Aligned_cols=65 Identities=22% Similarity=0.236 Sum_probs=48.8
Q ss_pred CCCCHHHHHHHhC------CCCCCCHHHHHHHHHHHHHHhCCCCCC--------C---------------HH-------H
Q 033745 47 PVMTRREAALILG------VRESTPTEKVKEAHRRVMVANHPDAGG--------S---------------HY-------L 90 (112)
Q Consensus 47 ~~m~~~ea~~iLg------l~~~~~~~eik~~yr~l~~~~HPDk~g--------s---------------~~-------~ 90 (112)
..-..+|+++|+. ++++.+.+++-++.+..-..+|||.|. | +| .
T Consensus 43 s~~~le~ar~iv~~yk~G~~~p~~t~~~lW~Akkl~dS~~HPDTgEk~~~~gRMSaqvP~nm~itggmLt~y~~~p~vvF 122 (328)
T KOG3767|consen 43 SEKKLEEARQIVEDYKAGKVPPGLTDDELWKAKKLYDSTFHPDTGEKMFLLGRMSAQVPFNMVITGGMLTPYRTTPGVVF 122 (328)
T ss_pred hHHHHHHHHHHHHhhccCCcCCCCcHHHHHHHHHHHhcccCCCCCCcccccccccccCcCcchhhhhhcccCCCCCeeee
Confidence 3345688999885 334478999999999999999999852 1 12 2
Q ss_pred HHHHHHHHHHhcccccCCCCC
Q 033745 91 ASKINEAKDIMLRRTKGSNSA 111 (112)
Q Consensus 91 ~~~i~~Ay~~L~~~~kr~~~~ 111 (112)
.+=+|+.+..+-++..|+|+.
T Consensus 123 wQW~NQSfNA~VNytNrsg~~ 143 (328)
T KOG3767|consen 123 WQWFNQSFNAAVNYTNRSGNS 143 (328)
T ss_pred HHHhhhHHHHHHhhcccCCCC
Confidence 355899999999999888863
No 80
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=52.98 E-value=30 Score=22.94 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=29.9
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHhCCCC---------CCCHHH
Q 033745 55 ALILGVRESTPTEKVKEAHRRVMVANHPDA---------GGSHYL 90 (112)
Q Consensus 55 ~~iLgl~~~~~~~eik~~yr~l~~~~HPDk---------~gs~~~ 90 (112)
...+++.++.+.+++++++++.+...+++. ||||+.
T Consensus 30 i~~i~~~~~~~~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp~n 74 (116)
T TIGR00824 30 VGAVPFVPGENAETLQEKYNAALADLDTEEEVLFLVDIFGGSPYN 74 (116)
T ss_pred eEEEEcCCCcCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHH
Confidence 566788888999999999999999987654 788864
No 81
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=50.11 E-value=25 Score=27.33 Aligned_cols=43 Identities=19% Similarity=0.275 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCC--------CHHHHHHHHHHHHHhccccc
Q 033745 64 TPTEKVKEAHRRVMVANHPDAGG--------SHYLASKINEAKDIMLRRTK 106 (112)
Q Consensus 64 ~~~~eik~~yr~l~~~~HPDk~g--------s~~~~~~i~~Ay~~L~~~~k 106 (112)
.+..++...|+......|||+-. ..+.+.+|.+||+++.+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~ 54 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEP 54 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccc
Confidence 45677889999999999999742 33667889999999997443
No 82
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=49.40 E-value=43 Score=18.28 Aligned_cols=31 Identities=19% Similarity=0.413 Sum_probs=18.1
Q ss_pred ChHHHHHHHHHHHHHH-HHHHHHHHHHHHHhC
Q 033745 1 MVAPLIAGMAVAAAAY-AGKYGIRAWQAFKAR 31 (112)
Q Consensus 1 m~~~~~~~l~~~~~~~-~~r~~~~A~~~~~~~ 31 (112)
|+-|++.|+++..-.+ +.-.|+-||.|+...
T Consensus 1 MvEplL~GiVlGli~vtl~Glfv~Ay~QY~Rg 32 (37)
T PF02529_consen 1 MVEPLLSGIVLGLIPVTLAGLFVAAYLQYRRG 32 (37)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHCS-
T ss_pred CCchhhhhHHHHhHHHHHHHHHHHHHHHHhcc
Confidence 7888888887654433 334567788887653
No 83
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=47.27 E-value=47 Score=18.09 Aligned_cols=31 Identities=23% Similarity=0.542 Sum_probs=19.2
Q ss_pred ChHHHHHHHHHHHHHH-HHHHHHHHHHHHHhC
Q 033745 1 MVAPLIAGMAVAAAAY-AGKYGIRAWQAFKAR 31 (112)
Q Consensus 1 m~~~~~~~l~~~~~~~-~~r~~~~A~~~~~~~ 31 (112)
|+-|++.|+++..-.+ +.-.|+-||.|+...
T Consensus 1 MvEplL~GiVLGlipiTl~GlfvaAylQYrRg 32 (37)
T PRK00665 1 MIEPLLCGIVLGLIPVTLAGLFVAAWNQYKRG 32 (37)
T ss_pred CcchhhhhHHHHhHHHHHHHHHHHHHHHHhcc
Confidence 7777777776543322 234567788887653
No 84
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=47.01 E-value=48 Score=18.07 Aligned_cols=31 Identities=13% Similarity=0.281 Sum_probs=19.3
Q ss_pred ChHHHHHHHHHHHHHH-HHHHHHHHHHHHHhC
Q 033745 1 MVAPLIAGMAVAAAAY-AGKYGIRAWQAFKAR 31 (112)
Q Consensus 1 m~~~~~~~l~~~~~~~-~~r~~~~A~~~~~~~ 31 (112)
|+-|++.|+++..-.+ +.-.|+-||.|+...
T Consensus 1 MvE~lL~GiVLGlipvTl~GlfvaAylQYrRg 32 (37)
T CHL00008 1 MIEVLLFGIVLGLIPITLAGLFVTAYLQYRRG 32 (37)
T ss_pred CcchhhhhHHHHhHHHHHHHHHHHHHHHHhhc
Confidence 7777887776543332 234567788887653
No 85
>smart00427 H2B Histone H2B.
Probab=45.43 E-value=53 Score=21.39 Aligned_cols=14 Identities=43% Similarity=0.624 Sum_probs=11.3
Q ss_pred HHHHHHhCCCCCCC
Q 033745 74 RRVMVANHPDAGGS 87 (112)
Q Consensus 74 r~l~~~~HPDk~gs 87 (112)
.+.+++.|||.|-+
T Consensus 8 ~kvLKqVhpd~giS 21 (89)
T smart00427 8 YKVLKQVHPDTGIS 21 (89)
T ss_pred HHHHHHhCCCcccc
Confidence 56789999999754
No 86
>PF12728 HTH_17: Helix-turn-helix domain
Probab=44.26 E-value=19 Score=19.91 Aligned_cols=15 Identities=47% Similarity=0.678 Sum_probs=12.6
Q ss_pred CCHHHHHHHhCCCCC
Q 033745 49 MTRREAALILGVRES 63 (112)
Q Consensus 49 m~~~ea~~iLgl~~~ 63 (112)
++.+|+.++||++..
T Consensus 2 lt~~e~a~~l~is~~ 16 (51)
T PF12728_consen 2 LTVKEAAELLGISRS 16 (51)
T ss_pred CCHHHHHHHHCcCHH
Confidence 688999999999654
No 87
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=43.66 E-value=57 Score=19.35 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=19.9
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCC
Q 033745 50 TRREAALILGVRESTPTEKVKEAHRRVMVANHPD 83 (112)
Q Consensus 50 ~~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPD 83 (112)
+...|.+.||-.+..+.+++-+..-+ ..+.||+
T Consensus 28 d~~kA~~~LgW~p~~~L~~~i~~~w~-W~~~np~ 60 (62)
T PF13950_consen 28 DISKAREELGWKPKYSLEDMIRDAWN-WQKKNPN 60 (62)
T ss_dssp --HHHHHHC----SSSHHHHHHHHHH-HHHHSTT
T ss_pred CHHHHHHHhCCCcCCCHHHHHHHHHH-HHHHCcC
Confidence 56889999999999999885554444 5566774
No 88
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=42.46 E-value=18 Score=28.12 Aligned_cols=15 Identities=33% Similarity=0.339 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhcc
Q 033745 89 YLASKINEAKDIMLR 103 (112)
Q Consensus 89 ~~~~~i~~Ay~~L~~ 103 (112)
-+.+|||||+|+|+.
T Consensus 128 RRLkKVNEAFE~LKR 142 (284)
T KOG3960|consen 128 RRLKKVNEAFETLKR 142 (284)
T ss_pred HHHHHHHHHHHHHHh
Confidence 468899999999985
No 89
>PF03206 NifW: Nitrogen fixation protein NifW; InterPro: IPR004893 Nitrogenase is a complex metalloenzyme composed of two proteins designated the Fe-protein and the MoFe-protein. Apart from these two proteins, a number of accessory proteins are essential for the maturation and assembly of nitrogenase. Even though experimental evidence suggests that these accessory proteins are required for nitrogenase activity, the exact roles played by many of these proteins in the functions of nitrogenase are unclear []. Using yeast two-hybrid screening it has been shown that NifW can interact with itself as well as NifZ. ; GO: 0009399 nitrogen fixation
Probab=42.39 E-value=1e+02 Score=20.55 Aligned_cols=55 Identities=11% Similarity=0.009 Sum_probs=39.2
Q ss_pred CCHHHHHHHhCCCCC-----CCHHHHHHHHHHHHHHhCCCCCCCH-HH---H-HHHHHHHHHhcc
Q 033745 49 MTRREAALILGVRES-----TPTEKVKEAHRRVMVANHPDAGGSH-YL---A-SKINEAKDIMLR 103 (112)
Q Consensus 49 m~~~ea~~iLgl~~~-----~~~~eik~~yr~l~~~~HPDk~gs~-~~---~-~~i~~Ay~~L~~ 103 (112)
-+.+|..+.|||+-+ .+.=.|-++|...+...++.-+.+. +. . .-+.+||+....
T Consensus 12 ~sAEdFf~fF~V~YDp~vv~V~RLHILkrF~~yL~~~~~~~~~~e~~~~~~~R~~L~~AY~dFv~ 76 (105)
T PF03206_consen 12 SSAEDFFDFFGVPYDPKVVNVNRLHILKRFGQYLRAADFAPGLSEEEDWAAYRRALERAYQDFVT 76 (105)
T ss_pred cCHHHHHHHhCCCcchhHHHHhhHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 357899999999865 5777888999999998877544443 22 2 226788876654
No 90
>PRK09649 RNA polymerase sigma factor SigC; Reviewed
Probab=42.23 E-value=27 Score=24.53 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCC
Q 033745 46 QPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPD 83 (112)
Q Consensus 46 ~~~m~~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPD 83 (112)
-..++.+|--++||++++.-...+.++-++|-+-..||
T Consensus 144 ~~g~s~~EIA~~lgis~~tVk~~l~Rar~~Lr~~~~~~ 181 (185)
T PRK09649 144 LLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPD 181 (185)
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCcc
Confidence 34456666666777666555555555555555544444
No 91
>PRK00810 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=41.23 E-value=1.1e+02 Score=20.69 Aligned_cols=33 Identities=12% Similarity=0.129 Sum_probs=23.8
Q ss_pred CCHHHHHHHhCCCCC-----CCHHHHHHHHHHHHHHhC
Q 033745 49 MTRREAALILGVRES-----TPTEKVKEAHRRVMVANH 81 (112)
Q Consensus 49 m~~~ea~~iLgl~~~-----~~~~eik~~yr~l~~~~H 81 (112)
-+.||..+.|||+-+ .+.=.|-++|...+..-.
T Consensus 16 ssAEdff~ff~V~YDp~vvnV~RLHILKrF~~yL~~~~ 53 (113)
T PRK00810 16 SSAEEFFQLLGVPYDPKVVNVARLHILKRMGQYLAQED 53 (113)
T ss_pred ccHHHHHHHhCCCCCHHHHHHhHHHHHHHHHHHHHhcc
Confidence 356888888988865 466677777777776554
No 92
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=38.77 E-value=16 Score=21.85 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=19.2
Q ss_pred HHHHHHhCCCCCCCHHHH-HHHHHHHHHHhCCCC
Q 033745 52 REAALILGVRESTPTEKV-KEAHRRVMVANHPDA 84 (112)
Q Consensus 52 ~ea~~iLgl~~~~~~~ei-k~~yr~l~~~~HPDk 84 (112)
++.+++||+++ +++ ......+....|||-
T Consensus 6 ~~~~~i~G~~~----~~~~~~~~~~~~~~ihpdD 35 (91)
T PF08447_consen 6 DNFYEIFGYSP----EEIGKPDFEEWLERIHPDD 35 (91)
T ss_dssp THHHHHHTS-H----HHHTCBEHHHHHHHB-TTT
T ss_pred HHHHHHhCCCH----HHhccCCHHHHHhhcCHHH
Confidence 46788999854 555 556667788889964
No 93
>PF12669 P12: Virus attachment protein p12 family
Probab=38.57 E-value=46 Score=19.67 Aligned_cols=19 Identities=32% Similarity=0.413 Sum_probs=8.3
Q ss_pred HHHHHHH-HHHHH-HHHHHHH
Q 033745 6 IAGMAVA-AAAYA-GKYGIRA 24 (112)
Q Consensus 6 ~~~l~~~-~~~~~-~r~~~~A 24 (112)
|++++++ ++.++ .|.+++.
T Consensus 3 II~~Ii~~~~~~v~~r~~~k~ 23 (58)
T PF12669_consen 3 IIGIIILAAVAYVAIRKFIKD 23 (58)
T ss_pred eHHHHHHHHHHHHHHHHHHHH
Confidence 3444433 33333 3666443
No 94
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=38.33 E-value=28 Score=18.39 Aligned_cols=15 Identities=47% Similarity=0.536 Sum_probs=12.5
Q ss_pred CCHHHHHHHhCCCCC
Q 033745 49 MTRREAALILGVRES 63 (112)
Q Consensus 49 m~~~ea~~iLgl~~~ 63 (112)
|+.+|+.+.||++..
T Consensus 2 lt~~e~a~~lgis~~ 16 (49)
T TIGR01764 2 LTVEEAAEYLGVSKD 16 (49)
T ss_pred CCHHHHHHHHCCCHH
Confidence 688999999999653
No 95
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=37.92 E-value=21 Score=18.01 Aligned_cols=18 Identities=33% Similarity=0.595 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHhCCC
Q 033745 66 TEKVKEAHRRVMVANHPD 83 (112)
Q Consensus 66 ~~eik~~yr~l~~~~HPD 83 (112)
.++.-+.+++++-..|||
T Consensus 25 ~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 25 LEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHH----------
T ss_pred HHHHHHHHHHHhcccccC
Confidence 366777888888888887
No 96
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=37.89 E-value=50 Score=20.31 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=15.3
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHH
Q 033745 49 MTRREAALILGVRESTPTEKVKE 71 (112)
Q Consensus 49 m~~~ea~~iLgl~~~~~~~eik~ 71 (112)
+|.+|-+++||++.+.+.++-.+
T Consensus 46 ks~eeir~~fgi~~d~t~eee~~ 68 (78)
T PF01466_consen 46 KSPEEIRKYFGIENDLTPEEEEE 68 (78)
T ss_dssp S-HHHHHHHHT---TSSHHHHHH
T ss_pred CCHHHHHHHcCCCCCCCHHHHHH
Confidence 68899999999999988766433
No 97
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=37.67 E-value=72 Score=25.06 Aligned_cols=38 Identities=13% Similarity=0.124 Sum_probs=32.8
Q ss_pred CCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhC
Q 033745 44 GFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANH 81 (112)
Q Consensus 44 ~~~~~m~~~ea~~iLgl~~~~~~~eik~~yr~l~~~~H 81 (112)
......+.+|...+.||++..+..||...|.-|....|
T Consensus 20 ~~~~~lt~~e~~~~~~ln~~~~l~eV~~iylpL~~l~~ 57 (283)
T COG1072 20 STPLTLTEEELKRLRGLNEPISLDEVEDIYLPLSRLLQ 57 (283)
T ss_pred cCccccCHHHHHHhccCCCCCCHHHHHHHHHHHHHHHH
Confidence 34556788999999999999999999999999887664
No 98
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=36.84 E-value=38 Score=24.22 Aligned_cols=11 Identities=18% Similarity=-0.034 Sum_probs=8.4
Q ss_pred HHHHHHHHHHH
Q 033745 89 YLASKINEAKD 99 (112)
Q Consensus 89 ~~~~~i~~Ay~ 99 (112)
..+.++|.+|+
T Consensus 99 ~~l~~lN~~Y~ 109 (166)
T PRK13798 99 AALAAGNRAYE 109 (166)
T ss_pred HHHHHHHHHHH
Confidence 56777888887
No 99
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=36.64 E-value=36 Score=22.12 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=15.4
Q ss_pred HHHHHHhCC---CCCCCHHHHHHHHHHH
Q 033745 52 REAALILGV---RESTPTEKVKEAHRRV 76 (112)
Q Consensus 52 ~ea~~iLgl---~~~~~~~eik~~yr~l 76 (112)
++|++|-.- ..++.+..|+++||+|
T Consensus 63 E~A~~Vq~~~~~~~pl~P~hlreA~rrL 90 (90)
T PF04719_consen 63 EEARDVQEEWGETGPLQPDHLREAYRRL 90 (90)
T ss_dssp HHHHHHHHHTT--SS--HHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCcHHHHHHHHhC
Confidence 556655442 2247889999999987
No 100
>PF08673 RsbU_N: Phosphoserine phosphatase RsbU, N-terminal domain; InterPro: IPR014787 The phosphoserine phosphatase RsbU acts as a positive regulator of the general stress-response factor of Gram-positive organisms, sigma-B. RsbU dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module. The phosphatase activity of RsbU is stimulated during the stress response by associating with the RsbT kinase. This association leads to the induction of sigmaB activity. The N-terminal domain forms a helix-swapped dimer that is otherwise similar to the KaiA domain dimer. Deletions in the N-terminal domain are deleterious to the activity of RsbU. The C-terminal domain of RsbU is similar to the catalytic domains of PP2C-type phosphatases [].; PDB: 2J6Y_D 2J6Z_A 2J70_A 1W53_A.
Probab=36.19 E-value=65 Score=20.18 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=18.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCC
Q 033745 61 RESTPTEKVKEAHRRVMVANHPDA 84 (112)
Q Consensus 61 ~~~~~~~eik~~yr~l~~~~HPDk 84 (112)
+.+++++||-.-|++.+...-|+.
T Consensus 32 ~~~I~PEeIv~iH~~~v~~l~~~~ 55 (77)
T PF08673_consen 32 EKDISPEEIVEIHKSAVQELSPSL 55 (77)
T ss_dssp HTT--HHHHHHHHHHHHHHH-TTS
T ss_pred HcCCCHHHHHHHHHHHHHHHcccc
Confidence 456899999999999999998885
No 101
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=35.47 E-value=21 Score=22.25 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=20.1
Q ss_pred HhCCCCCCCHHHHHHHHHHHHHHhCC
Q 033745 57 ILGVRESTPTEKVKEAHRRVMVANHP 82 (112)
Q Consensus 57 iLgl~~~~~~~eik~~yr~l~~~~HP 82 (112)
|..|..+.+.++||+.|.+++....|
T Consensus 6 i~~Lh~G~~~e~vk~~F~~~~~~Vs~ 31 (71)
T PF04282_consen 6 IKRLHEGEDPEEVKEEFKKLFSDVSA 31 (71)
T ss_pred HHHHhCCCCHHHHHHHHHHHHCCCCH
Confidence 44566778889999999988886655
No 102
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=35.44 E-value=48 Score=19.20 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=17.9
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHH
Q 033745 56 LILGVRESTPTEKVKEAHRRVMV 78 (112)
Q Consensus 56 ~iLgl~~~~~~~eik~~yr~l~~ 78 (112)
++=|+.|..+++|.|++-|+=..
T Consensus 3 ~~egl~pk~DPeE~k~kmR~dvi 25 (51)
T PF15178_consen 3 RIEGLGPKMDPEEMKRKMREDVI 25 (51)
T ss_pred ccccCCCCCCHHHHHHHHHHHHH
Confidence 34588899999999998876543
No 103
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=34.92 E-value=1.5e+02 Score=20.47 Aligned_cols=58 Identities=12% Similarity=0.112 Sum_probs=33.3
Q ss_pred CCCCCCCHHHHHHHhCCCCC---------CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHh
Q 033745 44 GFQPVMTRREAALILGVRES---------TPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIM 101 (112)
Q Consensus 44 ~~~~~m~~~ea~~iLgl~~~---------~~~~eik~~yr~l~~~~HPDk~gs~~~~~~i~~Ay~~L 101 (112)
++.+-++..+|+.+.||.+. .|.+.+.+.-..-++..--+.|.+.+-..+++.|-..|
T Consensus 62 ~l~~yP~l~~WL~vVgl~~~~i~~i~~~~~tLe~Llemsd~el~~~l~~~g~~~EE~rRL~~Al~~L 128 (129)
T PF13543_consen 62 ELNSYPSLRQWLRVVGLRPESIQAILSKVLTLEALLEMSDEELKEILNRCGAREEECRRLCRALSNL 128 (129)
T ss_pred hcccCCcHHHHhhhcCCCHHHHHHHHHhhcCHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 34455788999999999875 23333222221111111111366778888888887665
No 104
>KOG3219 consensus Transcription initiation factor TFIID, subunit TAF11 [Transcription]
Probab=34.40 E-value=42 Score=24.94 Aligned_cols=30 Identities=20% Similarity=0.209 Sum_probs=22.6
Q ss_pred HHHHHHHhCC---CCCCCHHHHHHHHHHHHHHh
Q 033745 51 RREAALILGV---RESTPTEKVKEAHRRVMVAN 80 (112)
Q Consensus 51 ~~ea~~iLgl---~~~~~~~eik~~yr~l~~~~ 80 (112)
.+||+.|.+. +..+-+..|+++||+|-.+-
T Consensus 150 VEeAl~V~~~~~e~~PLqP~HIREA~rrL~~qg 182 (195)
T KOG3219|consen 150 VEEALDVREEWGESGPLQPKHIREAYRRLKLQG 182 (195)
T ss_pred HHHHHHHHHHhccCCCCCcHHHHHHHHHHHhcC
Confidence 3777766555 34588999999999998753
No 105
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=33.78 E-value=49 Score=24.68 Aligned_cols=48 Identities=10% Similarity=0.128 Sum_probs=28.2
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHhc
Q 033745 53 EAALILGVRESTPTEKVKEAHRRVMVANHPDAG-GSHYLASKINEAKDIML 102 (112)
Q Consensus 53 ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~-gs~~~~~~i~~Ay~~L~ 102 (112)
++..+|||+...+.| +++|-.|.-+-.=++- ..-.-+..++.||..|-
T Consensus 38 dPLtaLGIeArsd~E--RrryAEl~vk~E~~rvekeLA~qrayd~A~~RL~ 86 (200)
T TIGR03759 38 DPLTALGIEARSDEE--RRRYAELWVKQEAQRVEKELAFQRAYDAAWQRLY 86 (200)
T ss_pred ChhhhhccccCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 568999999875555 6777777654421111 11122344667777764
No 106
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=33.27 E-value=44 Score=19.46 Aligned_cols=32 Identities=31% Similarity=0.440 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 033745 46 QPVMTRREAALILGVRESTPTEKVKEAHRRVM 77 (112)
Q Consensus 46 ~~~m~~~ea~~iLgl~~~~~~~eik~~yr~l~ 77 (112)
....+..|--+.||+++..-.+.|+++-++++
T Consensus 21 PR~~tl~elA~~lgis~st~~~~LRrae~kli 52 (53)
T PF04967_consen 21 PRRITLEELAEELGISKSTVSEHLRRAERKLI 52 (53)
T ss_pred CCcCCHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 34568899999999999888888999888876
No 107
>PF05344 DUF746: Domain of Unknown Function (DUF746); InterPro: IPR008008 This is a short conserved region found in some transposons.
Probab=32.81 E-value=84 Score=19.28 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=28.6
Q ss_pred CCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCC
Q 033745 46 QPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPD 83 (112)
Q Consensus 46 ~~~m~~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPD 83 (112)
..+++..+|-+.||+++.+-.+ --..||+-+++.+|.
T Consensus 11 s~~~s~~~Aa~~lG~~~~~v~~-wv~~fR~wll~LDPS 47 (65)
T PF05344_consen 11 SQQISVAQAADRLGTDPGTVRR-WVRMFRQWLLQLDPS 47 (65)
T ss_pred cccccHHHHHHHHCcCHHHHHH-HHHHHHHHHHHcCCC
Confidence 4567899999999998874333 346799999999873
No 108
>KOG1573 consensus Aldehyde reductase [General function prediction only]
Probab=32.52 E-value=88 Score=22.98 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=30.7
Q ss_pred CCCCCCHHHHHHHhCC-----CCCCCHHHHHHHHH--HHHHHhCCCC
Q 033745 45 FQPVMTRREAALILGV-----RESTPTEKVKEAHR--RVMVANHPDA 84 (112)
Q Consensus 45 ~~~~m~~~ea~~iLgl-----~~~~~~~eik~~yr--~l~~~~HPDk 84 (112)
-...|+.-|++++|+= +|+.+...|.-+|. .-+++.|||+
T Consensus 69 ~~~kM~i~ec~ell~~~vDESDPDlDepni~Ha~QtAE~iR~~~Pd~ 115 (204)
T KOG1573|consen 69 DKMKMTIWECCELLNEVVDESDPDLDEPNIQHALQTAEAIRKDYPDE 115 (204)
T ss_pred chhheeHHHHHHHHHhhhcccCCCCchHHHHHHHHHHHHHHHhCCCc
Confidence 3467999999999973 34477777888876 4578899998
No 109
>PLN00158 histone H2B; Provisional
Probab=32.41 E-value=1.1e+02 Score=20.99 Aligned_cols=16 Identities=38% Similarity=0.497 Sum_probs=12.0
Q ss_pred HHHHHHHhCCCCCCCH
Q 033745 73 HRRVMVANHPDAGGSH 88 (112)
Q Consensus 73 yr~l~~~~HPDk~gs~ 88 (112)
..+.+++.|||.|-|.
T Consensus 33 I~kVLKQVhPd~gIS~ 48 (116)
T PLN00158 33 IYKVLKQVHPDTGISS 48 (116)
T ss_pred HHHHHHHhCCCCCccH
Confidence 4566889999997653
No 110
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=31.83 E-value=62 Score=20.68 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=24.6
Q ss_pred HhCCCCC-CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 033745 57 ILGVRES-TPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAK 98 (112)
Q Consensus 57 iLgl~~~-~~~~eik~~yr~l~~~~HPDk~gs~~~~~~i~~Ay 98 (112)
--|++|+ ....++-++|..++...+| ++++.+..+...|
T Consensus 49 ~~g~~p~s~evq~l~~~~~~~~~~~~~---~~~~~~~~l~~~y 88 (118)
T PF07739_consen 49 EEGVDPDSPEVQELAERWMELINQFTG---GDPELLRGLAQMY 88 (118)
T ss_dssp HHT--TT-HHHHHHHHHHHHHHHHSS------HHHHHHHHHHT
T ss_pred HcCCCcCCHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 3466776 3556778888888887765 7788888877776
No 111
>COG3755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.07 E-value=62 Score=22.43 Aligned_cols=36 Identities=8% Similarity=0.008 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHHhc
Q 033745 64 TPTEKVKEAHRRVMVANH-PDAGGSHYLASKINEAKDIML 102 (112)
Q Consensus 64 ~~~~eik~~yr~l~~~~H-PDk~gs~~~~~~i~~Ay~~L~ 102 (112)
.-..+++++|+.++...| |++.. ..++-.+||-...
T Consensus 48 ~aDa~LN~AY~~ll~~l~~~~~~~---aL~kaQRAWi~fR 84 (127)
T COG3755 48 AADAELNKAYKALLKRLQDSPRTK---ALQKAQRAWIAFR 84 (127)
T ss_pred HHHHHHHHHHHHHHHHhccChHHH---HHHHHHHHHHHHh
Confidence 346789999999999887 66544 4667677775443
No 112
>PF14019 DUF4235: Protein of unknown function (DUF4235)
Probab=30.95 E-value=1.3e+02 Score=18.72 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033745 4 PLIAGMAVAAAAYAGKYGIRAWQAFKA 30 (112)
Q Consensus 4 ~~~~~l~~~~~~~~~r~~~~A~~~~~~ 30 (112)
++-+.+.++++.++.|.|-+.|+....
T Consensus 3 ~~~~~~~~~ag~~a~k~~~~~W~~~tg 29 (78)
T PF14019_consen 3 PVGLAAGLAAGFLAGKVFEQVWKKVTG 29 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456677888999999999999998754
No 113
>PHA01083 hypothetical protein
Probab=30.58 E-value=2e+02 Score=20.48 Aligned_cols=41 Identities=15% Similarity=0.237 Sum_probs=30.6
Q ss_pred hhCCCCCCCCHHHH---HHHhCCCCC----------CCHHHHHHHHHHHHHHhC
Q 033745 41 YEGGFQPVMTRREA---ALILGVRES----------TPTEKVKEAHRRVMVANH 81 (112)
Q Consensus 41 ~~~~~~~~m~~~ea---~~iLgl~~~----------~~~~eik~~yr~l~~~~H 81 (112)
++.|.+..++.+++ .+.+|+++. ...+++++.|..+.++..
T Consensus 36 ~R~G~r~~i~de~A~~LAe~aGiDp~eall~i~aDraetp~~kalWesIaKKln 89 (149)
T PHA01083 36 MRTGVRTYISDEEAIFLAESAGIDPEIALLGCHADRNENPRAKAIWESIAKKQN 89 (149)
T ss_pred HHcCCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 55566777888776 567888874 455778999999999883
No 114
>PRK12529 RNA polymerase sigma factor; Provisional
Probab=30.49 E-value=59 Score=22.58 Aligned_cols=31 Identities=16% Similarity=0.179 Sum_probs=15.2
Q ss_pred CCCHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q 033745 48 VMTRREAALILGVRESTPTEKVKEAHRRVMV 78 (112)
Q Consensus 48 ~m~~~ea~~iLgl~~~~~~~eik~~yr~l~~ 78 (112)
.++.+|.-++||++.+.-...+.++.+++..
T Consensus 143 g~s~~EIA~~lgis~~tVk~~l~rAl~~~~~ 173 (178)
T PRK12529 143 GMKQKDIAQALDIALPTVKKYIHQAYVTCLS 173 (178)
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3455555555555555444444444444433
No 115
>COG2879 Uncharacterized small protein [Function unknown]
Probab=30.19 E-value=48 Score=20.32 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=13.2
Q ss_pred HHHHHHHHHhCCCCCC
Q 033745 71 EAHRRVMVANHPDAGG 86 (112)
Q Consensus 71 ~~yr~l~~~~HPDk~g 86 (112)
..|-.-++.+|||+-.
T Consensus 26 dnYVehmr~~hPd~p~ 41 (65)
T COG2879 26 DNYVEHMRKKHPDKPP 41 (65)
T ss_pred HHHHHHHHHhCcCCCc
Confidence 4677888999999965
No 116
>PRK12547 RNA polymerase sigma factor; Provisional
Probab=30.02 E-value=61 Score=22.11 Aligned_cols=15 Identities=27% Similarity=0.335 Sum_probs=6.1
Q ss_pred CCHHHHHHHhCCCCC
Q 033745 49 MTRREAALILGVRES 63 (112)
Q Consensus 49 m~~~ea~~iLgl~~~ 63 (112)
++.+|--++||++++
T Consensus 129 ~s~~eIA~~lgis~~ 143 (164)
T PRK12547 129 FSYEDAAAICGCAVG 143 (164)
T ss_pred CCHHHHHHHhCCCHH
Confidence 333444444444433
No 117
>TIGR00798 mtc tricarboxylate carrier. The MTC family consists of a limited number of homologues, all from eukaryotes. A single member of the family has been functionally characterized, the tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism.
Probab=29.08 E-value=87 Score=24.98 Aligned_cols=65 Identities=18% Similarity=0.162 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHhC-----CCCCCCHHHHHHHHHHHHHHhCCCCCCC-----------------------------HHHH-
Q 033745 47 PVMTRREAALILG-----VRESTPTEKVKEAHRRVMVANHPDAGGS-----------------------------HYLA- 91 (112)
Q Consensus 47 ~~m~~~ea~~iLg-----l~~~~~~~eik~~yr~l~~~~HPDk~gs-----------------------------~~~~- 91 (112)
.....++|.+++. ..++.+.+|+-++-+-.--..|||.|.- .-.|
T Consensus 34 s~~~L~~a~~ll~~yr~g~~~~~t~~~lW~Akk~~dS~~HPDTGe~i~~~fRMS~fvP~n~~i~~gMl~p~~t~~~~iFW 113 (318)
T TIGR00798 34 SEKQLEKAREIVEDYKAGKASPLTVDELWRAKKLYDSAFHPDTGEKMFLPGRMSAQVPMNMVITGGMLTPYRSTPGVVFW 113 (318)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhcCCCCCCcccccccceeeeeccchhHhHhhcCCCCCchhHHH
Confidence 3344567777664 2233555777777777777899998521 0233
Q ss_pred HHHHHHHHHhcccccCCCCC
Q 033745 92 SKINEAKDIMLRRTKGSNSA 111 (112)
Q Consensus 92 ~~i~~Ay~~L~~~~kr~~~~ 111 (112)
|=+|+-|..+-++-.|.+|.
T Consensus 114 Qw~NQS~Na~vNyaNrNas~ 133 (318)
T TIGR00798 114 QWINQSFNAAVNYTNRSGDS 133 (318)
T ss_pred HHhhhhhHHHHHhhccCCCC
Confidence 44799999998888887764
No 118
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=29.00 E-value=53 Score=13.75 Aligned_cols=11 Identities=18% Similarity=0.299 Sum_probs=6.6
Q ss_pred HHHHHHHHHHh
Q 033745 91 ASKINEAKDIM 101 (112)
Q Consensus 91 ~~~i~~Ay~~L 101 (112)
+.+|..||+.|
T Consensus 3 ~~~V~~aY~~l 13 (14)
T PF07709_consen 3 FEKVKNAYEQL 13 (14)
T ss_pred HHHHHHHHHhc
Confidence 45566666655
No 119
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=28.93 E-value=45 Score=28.56 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHh
Q 033745 69 VKEAHRRVMVANHPDAGG---SHYLASKINEAKDIM 101 (112)
Q Consensus 69 ik~~yr~l~~~~HPDk~g---s~~~~~~i~~Ay~~L 101 (112)
+-+--.+.+..+|||+|. +...|+.+..-++.|
T Consensus 246 lLQELERhme~~HpDrgD~qrs~avfk~~~~~Cq~l 281 (661)
T KOG2070|consen 246 LLQELERHMEDYHPDRGDIQRSMAVFKNLSAQCQEL 281 (661)
T ss_pred HHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 334455667889999964 334444444444443
No 120
>cd04762 HTH_MerR-trunc Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.
Probab=28.78 E-value=40 Score=17.59 Aligned_cols=15 Identities=53% Similarity=0.705 Sum_probs=11.9
Q ss_pred CCHHHHHHHhCCCCC
Q 033745 49 MTRREAALILGVRES 63 (112)
Q Consensus 49 m~~~ea~~iLgl~~~ 63 (112)
|+..|+.+.||+++.
T Consensus 1 ~s~~e~a~~lgvs~~ 15 (49)
T cd04762 1 LTTKEAAELLGVSPS 15 (49)
T ss_pred CCHHHHHHHHCcCHH
Confidence 577899999999543
No 121
>PF04512 Baculo_PEP_N: Baculovirus polyhedron envelope protein, PEP, N terminus; InterPro: IPR007600 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=28.25 E-value=55 Score=21.59 Aligned_cols=32 Identities=16% Similarity=0.283 Sum_probs=24.8
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCC
Q 033745 50 TRREAALILGVRESTPTEKVKEAHRRVMVANHP 82 (112)
Q Consensus 50 ~~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HP 82 (112)
..+|..+||+++ ....++|-.+++++.+..-|
T Consensus 18 gaDEil~IL~lp-~s~l~~iP~~~kk~w~dl~~ 49 (97)
T PF04512_consen 18 GADEILSILRLP-CSALQSIPRSHKKLWKDLEP 49 (97)
T ss_pred cHHHHHHHhCCC-HHHHHHcCHHHHHHHHHhcc
Confidence 569999999999 44556777777777777766
No 122
>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypothes
Probab=27.78 E-value=75 Score=20.28 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=12.4
Q ss_pred CCCCCHHHHHHHHHHH
Q 033745 61 RESTPTEKVKEAHRRV 76 (112)
Q Consensus 61 ~~~~~~~eik~~yr~l 76 (112)
...+.+..|+++||+|
T Consensus 69 ~~Pl~P~HireA~rrl 84 (85)
T cd08048 69 TGPLQPRHLREAYRRL 84 (85)
T ss_pred CCCCCcHHHHHHHHHh
Confidence 3447888899999886
No 123
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=27.74 E-value=70 Score=22.64 Aligned_cols=11 Identities=18% Similarity=-0.094 Sum_probs=8.1
Q ss_pred HHHHHHHHHHH
Q 033745 89 YLASKINEAKD 99 (112)
Q Consensus 89 ~~~~~i~~Ay~ 99 (112)
..+.++|.+|+
T Consensus 94 ~~L~~lN~~Y~ 104 (158)
T TIGR03180 94 AALLEGNAAYE 104 (158)
T ss_pred HHHHHHHHHHH
Confidence 45677888886
No 124
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=27.57 E-value=1.1e+02 Score=18.21 Aligned_cols=33 Identities=12% Similarity=0.218 Sum_probs=18.1
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcccc
Q 033745 72 AHRRVMVANHPDAGGSHYLASKINEAKDIMLRRT 105 (112)
Q Consensus 72 ~yr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~ 105 (112)
.++.-+..-||+. +..+....|-+.|..|.++.
T Consensus 15 ~~r~~~~~~~p~~-~~~eisk~l~~~Wk~ls~~e 47 (72)
T cd01388 15 RHRRKVLQEYPLK-ENRAISKILGDRWKALSNEE 47 (72)
T ss_pred HHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 3444555566753 34455555666666665543
No 125
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=27.53 E-value=1.7e+02 Score=18.60 Aligned_cols=51 Identities=10% Similarity=0.040 Sum_probs=33.1
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HH----HHHHHHHHHHHhcccc
Q 033745 55 ALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HY----LASKINEAKDIMLRRT 105 (112)
Q Consensus 55 ~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~gs---~~----~~~~i~~Ay~~L~~~~ 105 (112)
..+.|++|.++.+||..+-.+.+.+..=-..+| .+ ....|..+-..|++.+
T Consensus 6 ~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~AV~eva~at~~LL~~L 63 (78)
T PF10041_consen 6 KTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDRAVAEVAAATRRLLDSL 63 (78)
T ss_pred hhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 356789999999999999888888764222222 22 2344666666665543
No 126
>TIGR03164 UHCUDC OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.
Probab=27.18 E-value=91 Score=22.00 Aligned_cols=11 Identities=18% Similarity=0.154 Sum_probs=7.5
Q ss_pred HHHHHHHHHHH
Q 033745 89 YLASKINEAKD 99 (112)
Q Consensus 89 ~~~~~i~~Ay~ 99 (112)
+.+.++|.+|+
T Consensus 94 ~~L~~lN~~Y~ 104 (157)
T TIGR03164 94 ARFTRLNNAYR 104 (157)
T ss_pred HHHHHHHHHHH
Confidence 45666788876
No 127
>PF13955 Fst_toxin: Toxin Fst, type I toxin-antitoxin system; PDB: 2KV5_A.
Probab=26.70 E-value=70 Score=15.32 Aligned_cols=10 Identities=30% Similarity=0.889 Sum_probs=7.4
Q ss_pred HHHHHHHHHH
Q 033745 3 APLIAGMAVA 12 (112)
Q Consensus 3 ~~~~~~l~~~ 12 (112)
+|+++|+++.
T Consensus 6 aPi~VGvvl~ 15 (21)
T PF13955_consen 6 APIVVGVVLT 15 (21)
T ss_dssp HHHHHHHHHH
T ss_pred hhHHHHHHHH
Confidence 6788887765
No 128
>PF11300 DUF3102: Protein of unknown function (DUF3102); InterPro: IPR021451 This entry is represented by Streptococcus phage 7201, Orf2. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=26.65 E-value=99 Score=21.42 Aligned_cols=16 Identities=25% Similarity=0.499 Sum_probs=11.4
Q ss_pred CCCHHHHHHHhCCCCC
Q 033745 48 VMTRREAALILGVRES 63 (112)
Q Consensus 48 ~m~~~ea~~iLgl~~~ 63 (112)
..+..+|..+||+++.
T Consensus 89 ~L~~tqal~Ll~lpee 104 (130)
T PF11300_consen 89 NLSYTQALILLGLPEE 104 (130)
T ss_pred hhhHHHHHHHHcCCch
Confidence 3455788999988654
No 129
>cd04761 HTH_MerR-SF Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily. Helix-turn-helix (HTH) transcription regulator MerR superfamily, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=26.29 E-value=45 Score=17.81 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=19.0
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 033745 49 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDA 84 (112)
Q Consensus 49 m~~~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk 84 (112)
|+..|+.++||+++ ..|+ .|.+..+.. |.+
T Consensus 1 ~~~~e~a~~~gv~~----~tlr-~~~~~g~l~-~~~ 30 (49)
T cd04761 1 YTIGELAKLTGVSP----STLR-YYERIGLLS-PAR 30 (49)
T ss_pred CcHHHHHHHHCcCH----HHHH-HHHHCCCCC-CCc
Confidence 57889999999954 3444 454444433 554
No 130
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=25.98 E-value=95 Score=15.18 Aligned_cols=14 Identities=21% Similarity=0.266 Sum_probs=7.6
Q ss_pred HHHHHHHhCCCCCC
Q 033745 73 HRRVMVANHPDAGG 86 (112)
Q Consensus 73 yr~l~~~~HPDk~g 86 (112)
++.++..+..|+.|
T Consensus 2 l~~~F~~~D~d~dG 15 (31)
T PF13405_consen 2 LREAFKMFDKDGDG 15 (31)
T ss_dssp HHHHHHHH-TTSSS
T ss_pred HHHHHHHHCCCCCC
Confidence 45566666555555
No 131
>PTZ00463 histone H2B; Provisional
Probab=25.58 E-value=97 Score=21.21 Aligned_cols=16 Identities=38% Similarity=0.484 Sum_probs=12.0
Q ss_pred HHHHHHHhCCCCCCCH
Q 033745 73 HRRVMVANHPDAGGSH 88 (112)
Q Consensus 73 yr~l~~~~HPDk~gs~ 88 (112)
..+.+++.|||.|-|.
T Consensus 34 I~KVLKqVhPd~gIS~ 49 (117)
T PTZ00463 34 IFKVLKQVHPDTGISR 49 (117)
T ss_pred HHHHHHhhCCCCCccH
Confidence 3566788999998654
No 132
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=25.38 E-value=53 Score=18.33 Aligned_cols=22 Identities=5% Similarity=0.031 Sum_probs=17.0
Q ss_pred hCCCCCCCHHHHHHHHHHHHHH
Q 033745 58 LGVRESTPTEKVKEAHRRVMVA 79 (112)
Q Consensus 58 Lgl~~~~~~~eik~~yr~l~~~ 79 (112)
-||+++++.++|++.+...-..
T Consensus 4 ~nlp~~~t~~~l~~~f~~~g~i 25 (70)
T PF00076_consen 4 GNLPPDVTEEELRDFFSQFGKI 25 (70)
T ss_dssp ESETTTSSHHHHHHHHHTTSTE
T ss_pred cCCCCcCCHHHHHHHHHHhhhc
Confidence 4788899999999888775443
No 133
>KOG2320 consensus RAS effector RIN1 (contains VPS domain) [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.05 E-value=75 Score=27.67 Aligned_cols=38 Identities=13% Similarity=0.136 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcc
Q 033745 61 RESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLR 103 (112)
Q Consensus 61 ~~~~~~~eik~~yr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~ 103 (112)
+.....|.|+.++..+.+.|||.+ +...+.+|.+.|..
T Consensus 398 Ps~~~mEqvk~k~~~m~r~YSP~k-----kl~~Llk~ckLly~ 435 (651)
T KOG2320|consen 398 PSDVLMEQVKQKFTAMQRRYSPSK-----KLHALLKACKLLYA 435 (651)
T ss_pred CcHHHHHHHHHHHHHHHHhhChHH-----HHHHHHHHHHHHHH
Confidence 334678999999999999999976 55566666666654
No 134
>cd06170 LuxR_C_like C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental
Probab=24.66 E-value=76 Score=17.03 Aligned_cols=31 Identities=32% Similarity=0.320 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhC
Q 033745 47 PVMTRREAALILGVRESTPTEKVKEAHRRVMVANH 81 (112)
Q Consensus 47 ~~m~~~ea~~iLgl~~~~~~~eik~~yr~l~~~~H 81 (112)
..++..|..+.||++ ...|+...+++.....
T Consensus 14 ~~~s~~eia~~l~~s----~~tv~~~~~~~~~~l~ 44 (57)
T cd06170 14 EGKTNKEIADILGIS----EKTVKTHLRNIMRKLG 44 (57)
T ss_pred cCCCHHHHHHHHCCC----HHHHHHHHHHHHHHhC
Confidence 347889999999984 4556666666655553
No 135
>COG4930 Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=24.61 E-value=3.6e+02 Score=23.08 Aligned_cols=30 Identities=17% Similarity=0.059 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 033745 65 PTEKVKEAHRRVMVANHPDAGGSHYLASKI 94 (112)
Q Consensus 65 ~~~eik~~yr~l~~~~HPDk~gs~~~~~~i 94 (112)
+...+|+-.-.|++..|||+.-+-+..+.|
T Consensus 415 Dviavkrt~SGLlKLL~Pd~t~~kee~k~i 444 (683)
T COG4930 415 DVIAVKRTTSGLLKLLFPDKTFDKEELKTI 444 (683)
T ss_pred hhHHHHHHHHHHHHHhCCCCCcCHHHHHHH
Confidence 445678899999999999998877655554
No 136
>PRK12511 RNA polymerase sigma factor; Provisional
Probab=24.47 E-value=1.1e+02 Score=21.52 Aligned_cols=38 Identities=24% Similarity=0.286 Sum_probs=18.0
Q ss_pred CCCCHHHHHHHhCCCCCCC---HHHHHHHHHHHHHHhCCCC
Q 033745 47 PVMTRREAALILGVRESTP---TEKVKEAHRRVMVANHPDA 84 (112)
Q Consensus 47 ~~m~~~ea~~iLgl~~~~~---~~eik~~yr~l~~~~HPDk 84 (112)
..++.+|.-++||++.+.- ....++.-++++...-|+.
T Consensus 126 eg~s~~EIA~~lgis~~tV~~~l~Rar~~Lr~~~~~~~~~~ 166 (182)
T PRK12511 126 EGLSYQEAAAVLGIPIGTLMSRIGRARAALRAFEEGTGPAR 166 (182)
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3455566666666665521 2222333344444444554
No 137
>PF08989 DUF1896: Domain of unknown function (DUF1896); InterPro: IPR015082 This domain is found in a set of hypothetical bacterial proteins. ; PDB: 2APL_A.
Probab=23.94 E-value=67 Score=22.77 Aligned_cols=32 Identities=13% Similarity=0.311 Sum_probs=18.7
Q ss_pred HHHHHHHHhCCCCCCCH-HHHHHHHHHHHHhcc
Q 033745 72 AHRRVMVANHPDAGGSH-YLASKINEAKDIMLR 103 (112)
Q Consensus 72 ~yr~l~~~~HPDk~gs~-~~~~~i~~Ay~~L~~ 103 (112)
.-+..+..+|||+-++. .+..+-.+|-+..++
T Consensus 14 ~L~~yL~e~hPe~~~d~~fI~~Rad~Aa~aYe~ 46 (144)
T PF08989_consen 14 YLLSYLRESHPERAGDTEFIEERADMAAEAYEQ 46 (144)
T ss_dssp HHHHHHHHH-GGGTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCchhccchHHHHHHHHHHHHHHHH
Confidence 33556788999998775 344555555555443
No 138
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=23.85 E-value=1.7e+02 Score=22.06 Aligned_cols=33 Identities=21% Similarity=0.109 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Q 033745 47 PVMTRREAALILGVRESTPTEKVKEAHRRVMVA 79 (112)
Q Consensus 47 ~~m~~~ea~~iLgl~~~~~~~eik~~yr~l~~~ 79 (112)
..++.+|--++||++.+.-...+.++-++|-..
T Consensus 130 ~g~s~~EIA~~lg~s~~tVk~~l~RAr~~Lr~~ 162 (293)
T PRK09636 130 FGVPFDEIASTLGRSPAACRQLASRARKHVRAA 162 (293)
T ss_pred hCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 346777777888887776666666666665554
No 139
>PRK05439 pantothenate kinase; Provisional
Probab=22.95 E-value=2e+02 Score=22.71 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=30.5
Q ss_pred CCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Q 033745 44 GFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVA 79 (112)
Q Consensus 44 ~~~~~m~~~ea~~iLgl~~~~~~~eik~~yr~l~~~ 79 (112)
....+++.+|-.++-|+...++.+||.+.|.-|...
T Consensus 24 ~~~~~l~~~~~~~l~~~~~~~~~~~v~~iy~plarl 59 (311)
T PRK05439 24 STPLTLTEEELERLRGLNDPISLEEVAEIYLPLSRL 59 (311)
T ss_pred cCCCCCCHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Confidence 456678999999999999999999999999665544
No 140
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=22.41 E-value=1.8e+02 Score=17.90 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=21.2
Q ss_pred HHHHHHHhCCCCCCCH--HHHHHHHHHHHHHh
Q 033745 51 RREAALILGVRESTPT--EKVKEAHRRVMVAN 80 (112)
Q Consensus 51 ~~ea~~iLgl~~~~~~--~eik~~yr~l~~~~ 80 (112)
-.+-.+-||+++..+. ..+++.|.+.+..+
T Consensus 60 W~~va~~lg~~~~~~~~~~~L~~~Y~~~L~~f 91 (92)
T PF01388_consen 60 WREVARKLGFPPSSTSAAQQLRQHYEKYLLPF 91 (92)
T ss_dssp HHHHHHHTTS-TTSCHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHhCCCCCCCcHHHHHHHHHHHHhHhh
Confidence 3566778899887544 68999999887654
No 141
>smart00421 HTH_LUXR helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon
Probab=22.25 E-value=92 Score=16.52 Aligned_cols=30 Identities=27% Similarity=0.281 Sum_probs=19.2
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Q 033745 47 PVMTRREAALILGVRESTPTEKVKEAHRRVMVAN 80 (112)
Q Consensus 47 ~~m~~~ea~~iLgl~~~~~~~eik~~yr~l~~~~ 80 (112)
..++..|..+.||++ ...|+...+++..+.
T Consensus 17 ~g~s~~eia~~l~is----~~tv~~~~~~~~~kl 46 (58)
T smart00421 17 EGLTNKEIAERLGIS----EKTVKTHLSNIMRKL 46 (58)
T ss_pred cCCCHHHHHHHHCCC----HHHHHHHHHHHHHHH
Confidence 346888888999984 455555555554444
No 142
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=21.90 E-value=1.1e+02 Score=22.86 Aligned_cols=54 Identities=13% Similarity=0.211 Sum_probs=33.9
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcccc
Q 033745 52 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDIMLRRT 105 (112)
Q Consensus 52 ~ea~~iLgl~~~~~~~eik~~yr~l~~~~HPDk~g---s~~~~~~i~~Ay~~L~~~~ 105 (112)
+-+++++|++.+-.+.+-.+-.++|-+.---|+-+ |.-.++++.-|...+.+++
T Consensus 105 eap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpq 161 (242)
T COG4161 105 EAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQ 161 (242)
T ss_pred hhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCc
Confidence 45689999987644444445555555555556621 3347788888887776653
No 143
>smart00150 SPEC Spectrin repeats.
Probab=21.48 E-value=1.2e+02 Score=17.92 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcccc
Q 033745 64 TPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRT 105 (112)
Q Consensus 64 ~~~~eik~~yr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~ 105 (112)
...+.|...-+.|....||+...-......|+.-|+.|.+..
T Consensus 52 ~~v~~~~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~ 93 (101)
T smart00150 52 ERVEALNELGEQLIEEGHPDAEEIEERLEELNERWEELKELA 93 (101)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777788888877765333356677888888887644
No 144
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=21.02 E-value=2.1e+02 Score=18.66 Aligned_cols=37 Identities=11% Similarity=0.141 Sum_probs=28.4
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHhCCCC---------CCCHHH
Q 033745 54 AALILGVRESTPTEKVKEAHRRVMVANHPDA---------GGSHYL 90 (112)
Q Consensus 54 a~~iLgl~~~~~~~eik~~yr~l~~~~HPDk---------~gs~~~ 90 (112)
-...+++.++.+.+++.++..+.+.....+. |||+..
T Consensus 28 ~i~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~viil~Dl~GGSp~n 73 (122)
T cd00006 28 NVEAIDFPPGESPDDLLEKIKAALAELDSGEGVLILTDLFGGSPNN 73 (122)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCcEEEEEeCCCCCHHH
Confidence 3556778888899999999999998875433 688854
No 145
>PRK08570 rpl19e 50S ribosomal protein L19e; Reviewed
Probab=20.97 E-value=1.4e+02 Score=21.25 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 033745 64 TPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKD 99 (112)
Q Consensus 64 ~~~~eik~~yr~l~~~~HPDk~gs~~~~~~i~~Ay~ 99 (112)
.|.++|++-...=+..-.|.++-|-....+-.++..
T Consensus 36 ~tR~dIR~LI~~G~I~~kp~kg~Sr~R~r~~~~~r~ 71 (150)
T PRK08570 36 ITREDIRELIKEGVIKAKPKKGISRGRARERHEKRK 71 (150)
T ss_pred hhHHHHHHHHHCCCeeecCccCCChHHHHHHHHHHH
Confidence 466667666666666678999888888777776654
No 146
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=20.49 E-value=59 Score=17.94 Aligned_cols=29 Identities=34% Similarity=0.409 Sum_probs=16.5
Q ss_pred CCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 033745 44 GFQPVMTRREAALILGVRESTPTEKVKEAHRRV 76 (112)
Q Consensus 44 ~~~~~m~~~ea~~iLgl~~~~~~~eik~~yr~l 76 (112)
-+-..++..|.-+.||++ ...|+..+.+-
T Consensus 22 ~~~~g~s~~eIa~~l~~s----~~~v~~~l~ra 50 (54)
T PF08281_consen 22 RYFQGMSYAEIAEILGIS----ESTVKRRLRRA 50 (54)
T ss_dssp HHTS---HHHHHHHCTS-----HHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHCcC----HHHHHHHHHHH
Confidence 345568889999999985 44555554443
No 147
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=20.02 E-value=1.2e+02 Score=29.88 Aligned_cols=38 Identities=13% Similarity=0.185 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcc
Q 033745 66 TEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLR 103 (112)
Q Consensus 66 ~~eik~~yr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~ 103 (112)
.-||.+.-.+|+...||+..-=..+.-.||.||+.|..
T Consensus 205 v~evnq~a~~~~~e~h~e~~~i~~k~~evn~aw~rl~~ 242 (2399)
T KOG0040|consen 205 VNEVNQYADKLVEEGHPELDLIQKKQDEVNAAWQRLKG 242 (2399)
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHhHHHHHHHHHHHHH
Confidence 45788888999999999875544567789999999863
Done!