BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033748
         (112 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ZKR|VV Chain v, Structure Of A Mammalian Ribosomal 60s Subunit Within An
          80s Complex Obtained By Docking Homology Models Of The
          Rna And Proteins Into An 8.7 A Cryo-Em Map
          Length = 123

 Score =  105 bits (263), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 59/99 (59%), Positives = 70/99 (70%)

Query: 1  MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
          MA+IK  +LR K K +               RVAKVTGGA +KLSKI+VVR SIA+VLTV
Sbjct: 1  MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60

Query: 61 ISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQ 99
          I+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL KH+
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHE 99


>pdb|4A17|U Chain U, T.Thermophila 60s Ribosomal Subunit In Complex With
           Initiation Factor 6. This File Contains 5s Rrna, 5.8s
           Rrna And Proteins Of Molecule 2.
 pdb|4A1A|U Chain U, T.Thermophila 60s Ribosomal Subunit In Complex With
           Initiation Factor 6. This File Contains 5s Rrna, 5.8s
           Rrna And Proteins Of Molecule 3.
 pdb|4A1C|U Chain U, T.Thermophila 60s Ribosomal Subunit In Complex With
           Initiation Factor 6. This File Contains 5s Rrna, 5.8s
           Rrna And Proteins Of Molecule 4.
 pdb|4A1E|U Chain U, T.Thermophila 60s Ribosomal Subunit In Complex With
           Initiation Factor 6. This File Contains 5s Rrna, 5.8s
           Rrna And Proteins Of Molecule 1
          Length = 124

 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 53/68 (77%)

Query: 32  RVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAI 91
           R+AK+ GG  NKL +I +VR +IA+ LT+I++K++ A+++ +K K   PLD+R KKTRAI
Sbjct: 33  RIAKIAGGTANKLGRIGIVRKAIAKYLTIINEKRRQAVKDQFKGKSLKPLDIRVKKTRAI 92

Query: 92  RRRLTKHQ 99
           RR+LTK Q
Sbjct: 93  RRKLTKKQ 100


>pdb|2GO5|5 Chain 5, Structure Of Signal Recognition Particle Receptor (Sr)
          In Complex With Signal Recognition Particle (Srp) And
          Ribosome Nascent Chain Complex
 pdb|2J37|5 Chain 5, Model Of Mammalian Srp Bound To 80s Rncs
 pdb|3IZR|CC Chain c, Localization Of The Large Subunit Ribosomal Proteins
          Into A 5.5 A Cryo-Em Map Of Triticum Aestivum
          Translating 80s Ribosome
          Length = 124

 Score = 75.9 bits (185), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/95 (48%), Positives = 59/95 (62%), Gaps = 1/95 (1%)

Query: 2  ARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVI 61
           ++K  EL  KSK D               R+ KV     +KL++I  +R SIA+VLTVI
Sbjct: 4  GKVKAGELWNKSKDDLTKQLAELKTELGQLRIQKVASSG-SKLNRIHDIRKSIARVLTVI 62

Query: 62 SQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLT 96
          + KQ+A LR  YKNKK+ PLDLR K+TRAIRRRL+
Sbjct: 63 NAKQRAQLRLFYKNKKYAPLDLRAKQTRAIRRRLS 97


>pdb|1S1I|X Chain X, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex
          From Yeast Obtained By Docking Atomic Models For Rna
          And Protein Components Into A 11.7 A Cryo-Em Map. This
          File, 1s1i, Contains 60s Subunit. The 40s Ribosomal
          Subunit Is In File 1s1h.
 pdb|2WW9|N Chain N, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound
          To The Yeast 80s Ribosome
 pdb|2WWA|N Chain N, Cryo-Em Structure Of Idle Yeast Ssh1 Complex Bound To
          The Yeast 80s Ribosome
 pdb|2WWB|N Chain N, Cryo-Em Structure Of The Mammalian Sec61 Complex Bound
          To The Actively Translating Wheat Germ 80s Ribosome
 pdb|3IZS|CC Chain c, Localization Of The Large Subunit Ribosomal Proteins
          Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
          Translating 80s Ribosome
 pdb|3O58|CC Chain c, Yeast 80s Ribosome. This Entry Consists Of The 60s
          Subunit Of The First 80s In The Asymmetric Unit.
 pdb|3O5H|CC Chain c, Yeast 80s Ribosome. This Entry Consists Of The 60s
          Subunit Of The Second 80s In The Asymmetric Unit.
 pdb|3U5E|HH Chain h, The Structure Of The Eukaryotic Ribosome At 3.0 A
          Resolution. This Entry Contains Proteins Of The 60s
          Subunit, Ribosome A
 pdb|3U5I|HH Chain h, The Structure Of The Eukaryotic Ribosome At 3.0 A
          Resolution. This Entry Contains Proteins Of The 60s
          Subunit, Ribosome B
 pdb|4B6A|HH Chain h, Cryo-Em Structure Of The 60s Ribosomal Subunit In
          Complex With Arx1 And Rei1
          Length = 120

 Score = 72.0 bits (175), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 3/99 (3%)

Query: 1  MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
          MA +K +ELR KSK                 +V K++  +   L KIK VR SIA VLTV
Sbjct: 1  MAGVKAYELRTKSKEQLASQLVDLKKELAELKVQKLSRPS---LPKIKTVRKSIACVLTV 57

Query: 61 ISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQ 99
          I+++Q+ A+R+ YK KK+ P DLR KKTRA+RR LTK +
Sbjct: 58 INEQQREAVRQLYKGKKYQPKDLRAKKTRALRRALTKFE 96


>pdb|3ZF7|KK Chain k, High-resolution Cryo-electron Microscopy Structure Of
          The Trypanosoma Brucei Ribosome
          Length = 127

 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 5/93 (5%)

Query: 4  IKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQ 63
          +K+ +L++K K D               RV++       +L +I+ +R  IA+++TV+++
Sbjct: 5  VKIRDLKEKGKDDLLKQLSEFKKELSQLRVSQQMNVGAARLGRIRTIRKGIARIMTVLNK 64

Query: 64 KQKAALREAYKNKKFLPLDLRPKKTRAIRRRLT 96
           ++  LR+ Y +KK     LR  K + +R +LT
Sbjct: 65 NERENLRKFYSDKK-----LRSAKPKTLRAKLT 92


>pdb|3JYW|X Chain X, Structure Of The 60s Proteins For Eukaryotic Ribosome
          Based On Cryo-Em Map Of Thermomyces Lanuginosus
          Ribosome At 8.9a Resolution
          Length = 86

 Score = 31.6 bits (70), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 2  ARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVI 61
          A +K +ELR KSK                 +V K++  +   L KIK VR SIA VLTVI
Sbjct: 1  AGVKAYELRTKSKEQLASQLVDLKKELAELKVQKLSRPS---LPKIKTVRKSIACVLTVI 57

Query: 62 SQKQ 65
          +++Q
Sbjct: 58 NEQQ 61


>pdb|1S72|V Chain V, Refined Crystal Structure Of The Haloarcula Marismortui
          Large Ribosomal Subunit At 2.4 Angstrom Resolution
 pdb|1YHQ|V Chain V, Crystal Structure Of Azithromycin Bound To The G2099a
          Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
 pdb|1YI2|V Chain V, Crystal Structure Of Erythromycin Bound To The G2099a
          Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
 pdb|1YIJ|V Chain V, Crystal Structure Of Telithromycin Bound To The G2099a
          Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
 pdb|1YIT|V Chain V, Crystal Structure Of Virginiamycin M And S Bound To The
          50s Ribosomal Subunit Of Haloarcula Marismortui
 pdb|1YJ9|V Chain V, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of
          Haloarcula Marismortui Containing A Three Residue
          Deletion In L22
 pdb|1YJN|V Chain V, Crystal Structure Of Clindamycin Bound To The G2099a
          Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
 pdb|1YJW|V Chain V, Crystal Structure Of Quinupristin Bound To The G2099a
          Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
 pdb|1VQ4|V Chain V, The Structure Of The Transition State Analogue "daa"
          Bound To The Large Ribosomal Subunit Of Haloarcula
          Marismortui
 pdb|1VQ5|V Chain V, The Structure Of The Transition State Analogue "raa"
          Bound To The Large Ribosomal Subunit Of Haloarcula
          Marismortui
 pdb|1VQ6|V Chain V, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The
          Large Ribosomal Subunit Of Haloarcula Marismortui
 pdb|1VQ7|V Chain V, The Structure Of The Transition State Analogue "dca"
          Bound To The Large Ribosomal Subunit Of Haloarcula
          Marismortui
 pdb|1VQ8|V Chain V, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic
          Sparsomycin Bound To The Large Ribosomal Subunit Of
          Haloarcula Marismortui
 pdb|1VQ9|V Chain V, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic
          Sparsomycin Bound To The Large Ribosomal Subunit Of
          Haloarcula Marismortui
 pdb|1VQK|V Chain V, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of
          The Ribosomal Subunit Of Haloarcula Marismortui
 pdb|1VQL|V Chain V, The Structure Of The Transition State Analogue "dcsn"
          Bound To The Large Ribosomal Subunit Of Haloarcula
          Marismortui
 pdb|1VQM|V Chain V, The Structure Of The Transition State Analogue "dan"
          Bound To The Large Ribosomal Subunit Of Haloarcula
          Marismortui
 pdb|1VQN|V Chain V, The Structure Of Cc-hpmn And Cca-phe-cap-bio Bound To
          The Large Ribosomal Subunit Of Haloarcula Marismortui
 pdb|1VQO|V Chain V, The Structure Of Ccpmn Bound To The Large Ribosomal
          Subunit Haloarcula Marismortui
 pdb|1VQP|V Chain V, The Structure Of The Transition State Analogue "rap"
          Bound To The Large Ribosomal Subunit Of Haloarcula
          Marismortui
 pdb|2OTJ|V Chain V, 13-Deoxytedanolide Bound To The Large Subunit Of
          Haloarcula Marismortui
 pdb|2OTL|V Chain V, Girodazole Bound To The Large Subunit Of Haloarcula
          Marismortui
 pdb|2QA4|V Chain V, A More Complete Structure Of The The L7L12 STALK OF THE
          Haloarcula Marismortui 50s Large Ribosomal Subunit
 pdb|3CC2|V Chain V, The Refined Crystal Structure Of The Haloarcula
          Marismortui Large Ribosomal Subunit At 2.4 Angstrom
          Resolution With Rrna Sequence For The 23s Rrna And
          Genome-Derived Sequences For R-Proteins
 pdb|3CC4|V Chain V, Co-Crystal Structure Of Anisomycin Bound To The 50s
          Ribosomal Subunit
 pdb|3CC7|V Chain V, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
          23s Rrna Mutation C2487u
 pdb|3CCE|V Chain V, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
          23s Rrna Mutation U2535a
 pdb|3CCJ|V Chain V, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
          23s Rrna Mutation C2534u
 pdb|3CCL|V Chain V, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
          23s Rrna Mutation U2535c. Density For Anisomycin Is
          Visible But Not Included In Model.
 pdb|3CCM|V Chain V, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
          23s Rrna Mutation G2611u
 pdb|3CCQ|V Chain V, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
          23s Rrna Mutation A2488u
 pdb|3CCR|V Chain V, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
          23s Rrna Mutation A2488c. Density For Anisomycin Is
          Visible But Not Included In The Model.
 pdb|3CCS|V Chain V, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
          23s Rrna Mutation G2482a
 pdb|3CCU|V Chain V, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
          23s Rrna Mutation G2482c
 pdb|3CCV|V Chain V, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
          23s Rrna Mutation G2616a
 pdb|3CD6|V Chain V, Co-cystal Of Large Ribosomal Subunit Mutant G2616a With
          Cc-puromycin
 pdb|3CPW|U Chain U, The Structure Of The Antibiotic Linezolid Bound To The
          Large Ribosomal Subunit Of Haloarcula Marismortui
 pdb|3CMA|V Chain V, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The
          Large Ribosomal Subunit Of Haloarcula Marismortui
 pdb|3CME|V Chain V, The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The
          Large Ribosomal Subunit Of Haloarcula Marismortui
 pdb|2QEX|V Chain V, Negamycin Binds To The Wall Of The Nascent Chain Exit
          Tunnel Of The 50s Ribosomal Subunit
 pdb|3I55|V Chain V, Co-Crystal Structure Of Mycalamide A Bound To The Large
          Ribosomal Subunit
 pdb|3I56|V Chain V, Co-Crystal Structure Of Triacetyloleandomcyin Bound To
          The Large Ribosomal Subunit
 pdb|4ADX|V Chain V, The Cryo-Em Structure Of The Archaeal 50s Ribosomal
          Subunit In Complex With Initiation Factor 6
          Length = 71

 Score = 28.5 bits (62), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 1  MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
          M  + V E+R  +  +               R  +  GGAP    +IK +R +IA++ T+
Sbjct: 1  MTVLHVQEIRDMTPAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTI 60

Query: 61 ISQKQKAALRE 71
            Q ++  L+E
Sbjct: 61 --QGEEGDLQE 69


>pdb|1FFK|S Chain S, Crystal Structure Of The Large Ribosomal Subunit From
          Haloarcula Marismortui At 2.4 Angstrom Resolution
 pdb|1GIY|W Chain W, Crystal Structure Of The Ribosome At 5.5 A Resolution.
          This File, 1giy, Contains The 50s Ribosome Subunit. The
          30s Ribosome Subunit, Three Trna, And Mrna Molecules
          Are In The File 1gix
 pdb|1JJ2|U Chain U, Fully Refined Crystal Structure Of The Haloarcula
          Marismortui Large Ribosomal Subunit At 2.4 Angstrom
          Resolution
 pdb|1KQS|U Chain U, The Haloarcula Marismortui 50s Complexed With A
          Pretranslocational Intermediate In Protein Synthesis
 pdb|1K8A|W Chain W, Co-Crystal Structure Of Carbomycin A Bound To The 50s
          Ribosomal Subunit Of Haloarcula Marismortui
 pdb|1K9M|W Chain W, Co-Crystal Structure Of Tylosin Bound To The 50s
          Ribosomal Subunit Of Haloarcula Marismortui
 pdb|1KD1|W Chain W, Co-crystal Structure Of Spiramycin Bound To The 50s
          Ribosomal Subunit Of Haloarcula Marismortui
 pdb|1M1K|W Chain W, Co-Crystal Structure Of Azithromycin Bound To The 50s
          Ribosomal Subunit Of Haloarcula Marismortui
 pdb|1M90|W Chain W, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And
          Sparsomycin Bound To The 50s Ribosomal Subunit
 pdb|1ML5|WW Chain w, Structure Of The E. Coli Ribosomal Termination Complex
          With Release Factor 2
 pdb|1K73|W Chain W, Co-Crystal Structure Of Anisomycin Bound To The 50s
          Ribosomal Subunit
 pdb|1KC8|W Chain W, Co-Crystal Structure Of Blasticidin S Bound To The 50s
          Ribosomal Subunit
 pdb|1N8R|W Chain W, Structure Of Large Ribosomal Subunit In Complex With
          Virginiamycin M
 pdb|1NJI|W Chain W, Structure Of Chloramphenicol Bound To The 50s Ribosomal
          Subunit
 pdb|1Q7Y|W Chain W, Crystal Structure Of Ccdap-puromycin Bound At The
          Peptidyl Transferase Center Of The 50s Ribosomal
          Subunit
 pdb|1Q81|W Chain W, Crystal Structure Of Minihelix With 3' Puromycin Bound
          To A- Site Of The 50s Ribosomal Subunit.
 pdb|1Q82|W Chain W, Crystal Structure Of Cc-Puromycin Bound To The A-Site Of
          The 50s Ribosomal Subunit
 pdb|1Q86|W Chain W, Crystal Structure Of Cca-Phe-Cap-Biotin Bound
          Simultaneously At Half Occupancy To Both The A-Site And
          P- Site Of The The 50s Ribosomal Subunit.
 pdb|1QVF|U Chain U, Structure Of A Deacylated Trna Minihelix Bound To The E
          Site Of The Large Ribosomal Subunit Of Haloarcula
          Marismortui
 pdb|1QVG|U Chain U, Structure Of Cca Oligonucleotide Bound To The Trna
          Binding Sites Of The Large Ribosomal Subunit Of
          Haloarcula Marismortui
 pdb|1W2B|U Chain U, Trigger Factor Ribosome Binding Domain In Complex With
          50s
 pdb|1YL3|W Chain W, Crystal Structure Of 70s Ribosome With Thrs Operator And
          Trnas. Large Subunit. The Coordinates For The Small
          Subunit Are In The Pdb Entry 1yl4.
 pdb|2B66|2 Chain 2, 50s Ribosomal Subunit From A Crystal Structure Of
          Release Factor Rf1, Trnas And Mrna Bound To The
          Ribosome. This File Contains The 50s Subunit From A
          Crystal Structure Of Release Factor Rf1, Trnas And Mrna
          Bound To The Ribosome And Is Described In Remark 400
 pdb|2B9N|2 Chain 2, 50s Ribosomal Subunit From A Crystal Structure Of
          Release Factor Rf2, Trnas And Mrna Bound To The
          Ribosome. This File Contains The 50s Subunit From A
          Crystal Structure Of Release Factor Rf1, Trnas And Mrna
          Bound To The Ribosome And Is Described In Remark 400.
 pdb|2B9P|2 Chain 2, 50s Ribosomal Subunit From A Crystal Structure Of The
          Ribosome In Complex With Trnas And Mrna With A Stop
          Codon In The A-Site. This File Contains The 50s Subunit
          From A Crystal Structure Of The Ribosome In Complex
          With Trnas And Mrna With A Stop Codon In The A-Site And
          Is Described In Remark 400.
 pdb|3CXC|U Chain U, The Structure Of An Enhanced Oxazolidinone Inhibitor
          Bound To The 50s Ribosomal Subunit Of H. Marismortui
          Length = 70

 Score = 27.3 bits (59), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 4  IKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQ 63
          + V E+R  +  +               R  +  GGAP    +IK +R +IA++ T+  Q
Sbjct: 3  LHVQEIRDMTPAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTI--Q 60

Query: 64 KQKAALRE 71
           ++  L+E
Sbjct: 61 GEEGDLQE 68


>pdb|2YVS|A Chain A, Crystal Structure Of Glycolate Oxidase Subunit Glce From
           Thermus Thermophilus Hb8
 pdb|2YVS|B Chain B, Crystal Structure Of Glycolate Oxidase Subunit Glce From
           Thermus Thermophilus Hb8
          Length = 219

 Score = 26.9 bits (58), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 69  LREAYKNKKFLPLDLRPKKTRAI 91
            REA+  ++  PLDLRP+  R +
Sbjct: 163 FREAFGGEEARPLDLRPRFPRGL 185


>pdb|1AOH|A Chain A, Single Cohesin Domain From The Scaffolding Protein Cipa Of
           The Clostridium Thermocellum Cellulosome
 pdb|1AOH|B Chain B, Single Cohesin Domain From The Scaffolding Protein Cipa Of
           The Clostridium Thermocellum Cellulosome
          Length = 147

 Score = 26.6 bits (57), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 33  VAKVTGGAPNKLSKIKVVRLS 53
           VAKV  GAPN LS IK V + 
Sbjct: 105 VAKVKSGAPNGLSVIKFVEVG 125


>pdb|3G4S|V Chain V, Co-Crystal Structure Of Tiamulin Bound To The Large
          Ribosomal Subunit
 pdb|3G6E|V Chain V, Co-Crystal Structure Of Homoharringtonine Bound To The
          Large Ribosomal Subunit
 pdb|3G71|V Chain V, Co-crystal Structure Of Bruceantin Bound To The Large
          Ribosomal Subunit
 pdb|3OW2|U Chain U, Crystal Structure Of Enhanced Macrolide Bound To 50s
          Ribosomal Subunit
          Length = 65

 Score = 26.6 bits (57), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 14/61 (22%), Positives = 27/61 (44%)

Query: 4  IKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQ 63
          + V E+R  +  +               R  +  GGAP    +IK +R +IA++ T+  +
Sbjct: 3  LHVQEIRDMTPAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTIQGE 62

Query: 64 K 64
          +
Sbjct: 63 E 63


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.131    0.344 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,852,633
Number of Sequences: 62578
Number of extensions: 42762
Number of successful extensions: 110
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 98
Number of HSP's gapped (non-prelim): 13
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)