Query 033748
Match_columns 112
No_of_seqs 115 out of 1032
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 05:51:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033748.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033748hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3436 60S ribosomal protein 100.0 5.3E-31 1.1E-35 189.5 9.5 102 1-102 1-102 (123)
2 CHL00154 rpl29 ribosomal prote 99.9 1.3E-24 2.7E-29 142.9 8.8 65 1-66 1-65 (67)
3 PRK14549 50S ribosomal protein 99.9 5.3E-24 1.1E-28 140.4 8.8 67 1-67 1-67 (69)
4 COG0255 RpmC Ribosomal protein 99.9 6.6E-23 1.4E-27 135.7 8.3 62 7-69 6-67 (69)
5 PRK00306 50S ribosomal protein 99.9 4.8E-22 1E-26 129.4 8.7 64 4-68 1-64 (66)
6 PF00831 Ribosomal_L29: Riboso 99.9 1.1E-21 2.3E-26 125.1 7.4 58 6-64 1-58 (58)
7 PRK00461 rpmC 50S ribosomal pr 99.9 4.1E-21 8.9E-26 132.0 8.8 67 5-72 1-67 (87)
8 cd00427 Ribosomal_L29_HIP Ribo 99.8 9.6E-21 2.1E-25 120.2 6.7 57 7-64 1-57 (57)
9 TIGR00012 L29 ribosomal protei 99.8 1.2E-20 2.7E-25 119.1 6.5 55 8-63 1-55 (55)
10 PF06984 MRP-L47: Mitochondria 96.7 0.013 2.7E-07 40.4 7.2 60 5-64 24-87 (87)
11 KOG3331 Mitochondrial/chloropl 94.4 0.33 7.1E-06 38.3 8.1 63 5-68 67-134 (213)
12 PF06698 DUF1192: Protein of u 74.7 4 8.7E-05 26.3 2.9 30 7-36 16-45 (59)
13 PF08188 Protamine_3: Spermato 74.4 11 0.00023 23.1 4.5 42 44-85 4-48 (48)
14 PF10044 Ret_tiss: Retinal tis 56.3 18 0.00039 25.3 3.5 31 5-35 51-81 (95)
15 PRK11546 zraP zinc resistance 56.2 65 0.0014 24.0 6.6 27 40-66 84-110 (143)
16 PF08700 Vps51: Vps51/Vps67; 53.9 35 0.00076 21.8 4.4 57 6-64 21-77 (87)
17 PF10655 DUF2482: Hypothetical 49.7 19 0.00041 25.5 2.7 28 7-34 3-30 (100)
18 COG5493 Uncharacterized conser 46.8 35 0.00075 27.4 4.1 54 11-64 45-107 (231)
19 smart00540 LEM in nuclear memb 45.1 14 0.0003 22.4 1.3 17 8-24 2-18 (44)
20 PRK10515 hypothetical protein; 43.4 1.1E+02 0.0024 21.3 8.1 70 4-80 3-72 (90)
21 PF03962 Mnd1: Mnd1 family; I 41.2 1.2E+02 0.0026 23.1 6.2 49 14-63 105-153 (188)
22 PF07106 TBPIP: Tat binding pr 40.1 1.5E+02 0.0031 21.6 8.1 47 14-63 81-127 (169)
23 PF08621 RPAP1_N: RPAP1-like, 33.3 47 0.001 20.4 2.3 21 7-27 10-30 (49)
24 PRK11875 psbT photosystem II r 33.2 28 0.0006 19.9 1.2 10 103-112 14-23 (31)
25 PF05812 Herpes_BLRF2: Herpesv 32.3 1E+02 0.0022 22.4 4.3 43 11-53 2-47 (118)
26 PF10845 DUF2576: Protein of u 32.1 80 0.0017 19.6 3.2 28 11-38 10-37 (48)
27 PF07795 DUF1635: Protein of u 31.9 2.6E+02 0.0057 22.2 8.5 54 13-74 2-57 (214)
28 CHL00031 psbT photosystem II p 30.9 29 0.00062 20.1 1.0 11 102-112 13-23 (33)
29 PF01405 PsbT: Photosystem II 30.9 37 0.0008 19.1 1.4 11 102-112 13-23 (29)
30 PF11656 DUF3811: YjbD family 30.8 1.9E+02 0.004 20.1 7.9 66 6-80 3-70 (87)
31 PHA03155 hypothetical protein; 30.8 2E+02 0.0042 21.0 5.5 42 11-53 7-48 (115)
32 PF08312 cwf21: cwf21 domain; 28.2 93 0.002 18.8 3.0 21 10-30 23-43 (46)
33 TIGR01639 P_fal_TIGR01639 Plas 26.9 56 0.0012 20.5 2.0 22 5-26 2-24 (61)
34 PF04999 FtsL: Cell division p 26.4 1.6E+02 0.0034 19.4 4.2 33 14-49 44-76 (97)
35 PF08135 EPV_E5: Major transfo 25.6 40 0.00088 20.5 1.1 11 102-112 18-28 (44)
36 PF07989 Microtub_assoc: Micro 24.8 1.1E+02 0.0023 20.2 3.1 51 13-63 1-54 (75)
37 PF15397 DUF4618: Domain of un 24.0 3.7E+02 0.0081 21.9 6.7 49 13-62 89-137 (258)
38 PHA03162 hypothetical protein; 23.6 2E+02 0.0044 21.4 4.6 29 10-38 11-39 (135)
39 PRK10204 hypothetical protein; 23.5 50 0.0011 21.0 1.2 12 93-104 2-13 (55)
40 PF03032 Brevenin: Brevenin/es 23.3 55 0.0012 20.0 1.4 9 102-110 6-14 (46)
41 PF10200 Ndufs5: NADH:ubiquino 22.9 1.5E+02 0.0033 20.7 3.7 33 43-80 62-94 (96)
42 PRK11546 zraP zinc resistance 22.7 1.6E+02 0.0034 22.0 4.0 22 15-36 92-113 (143)
43 PF11629 Mst1_SARAH: C termina 22.1 1.4E+02 0.003 18.6 3.0 17 9-25 5-21 (49)
44 PF11119 DUF2633: Protein of u 21.7 47 0.001 21.5 0.9 16 97-112 7-22 (59)
45 PRK03717 ribonuclease P protei 21.2 47 0.001 23.7 0.9 12 76-87 5-16 (120)
46 TIGR02929 anfG_nitrog Fe-only 20.9 97 0.0021 22.3 2.4 34 9-42 72-105 (109)
47 PF13292 DXP_synthase_N: 1-deo 20.9 92 0.002 25.6 2.6 28 5-32 6-33 (270)
48 PF08838 DUF1811: Protein of u 20.8 2E+02 0.0044 20.4 4.0 40 8-54 3-42 (102)
49 PF08317 Spc7: Spc7 kinetochor 20.5 4.7E+02 0.01 21.2 7.3 52 13-65 178-229 (325)
50 PF08285 DPM3: Dolichol-phosph 20.4 1.2E+02 0.0025 20.9 2.7 17 14-30 70-86 (91)
51 COG5509 Uncharacterized small 20.4 2.5E+02 0.0053 18.5 4.0 31 8-38 21-51 (65)
No 1
>KOG3436 consensus 60S ribosomal protein L35 [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=5.3e-31 Score=189.54 Aligned_cols=102 Identities=75% Similarity=0.985 Sum_probs=99.3
Q ss_pred CCCCChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 033748 1 MARIKVHELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLP 80 (112)
Q Consensus 1 M~~mK~~ELR~lS~eEL~~~L~elkkELf~LRfq~~~g~~l~np~~ir~~RKdIARIlTvl~ek~~~~~~~~y~~~~~~p 80 (112)
|+..+..||++.|.+||.+++++++.||+.||+++++||.-++.+.|+.+|++|||++||+||++.++++++|+|++++|
T Consensus 1 M~kik~~eLr~~~ke~L~~ql~dLK~ELa~LRv~K~tgg~~~klskik~vrKsiArvLTVine~~k~~lr~~yk~~k~~p 80 (123)
T KOG3436|consen 1 MAKIKARELRGKSKEQLLKQLDDLKVELAQLRVAKVTGGAASKLSKIKVVRKSIARVLTVINEKQKEELREAYKGKKYLP 80 (123)
T ss_pred CcchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcccccc
Confidence 88899999999999999999999999999999999999877899999999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHhhcCHHHHHH
Q 033748 81 LDLRPKKTRAIRRRLTKHQVLF 102 (112)
Q Consensus 81 ~~lrpk~t~~~r~~l~~~~~~~ 102 (112)
+|||||+||++|+.||++|.++
T Consensus 81 ~dLr~KktRa~rr~ltk~~~sl 102 (123)
T KOG3436|consen 81 KDLRPKKTRAIRRRLTKHQLSL 102 (123)
T ss_pred hhhhHHHHHHHHHhccccchhH
Confidence 9999999999999999999875
No 2
>CHL00154 rpl29 ribosomal protein L29; Validated
Probab=99.92 E-value=1.3e-24 Score=142.90 Aligned_cols=65 Identities=26% Similarity=0.299 Sum_probs=62.9
Q ss_pred CCCCChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 033748 1 MARIKVHELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQK 66 (112)
Q Consensus 1 M~~mK~~ELR~lS~eEL~~~L~elkkELf~LRfq~~~g~~l~np~~ir~~RKdIARIlTvl~ek~~ 66 (112)
|+.|+++||+++|.+||.+++.++++|||+||||+++| +++|||.|+.+|||||||+||++|+..
T Consensus 1 M~~mk~~elr~ls~~eL~~~l~elk~elf~LRfq~atg-ql~n~~~ir~~RrdIARikTil~ek~~ 65 (67)
T CHL00154 1 MSLPKITDIIDLTDSEISEEIIKTKKELFDLRLKKATR-QNFKPHLFKHKKHRLAQLLTLLSSRLK 65 (67)
T ss_pred CCCCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-cccChHHHHHHHHHHHHHHHHHHHHhc
Confidence 88899999999999999999999999999999999999 899999999999999999999999853
No 3
>PRK14549 50S ribosomal protein L29P; Provisional
Probab=99.91 E-value=5.3e-24 Score=140.35 Aligned_cols=67 Identities=34% Similarity=0.529 Sum_probs=64.2
Q ss_pred CCCCChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 033748 1 MARIKVHELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKA 67 (112)
Q Consensus 1 M~~mK~~ELR~lS~eEL~~~L~elkkELf~LRfq~~~g~~l~np~~ir~~RKdIARIlTvl~ek~~~ 67 (112)
|+.|+++||+++|.+||.+++.++++|||+|||++++|++++|||.|+.+|||||||+||++|++++
T Consensus 1 M~~mk~~elr~ls~~eL~~~l~elk~eLf~LR~q~~~~~~l~n~~~ir~~Rk~IARi~Tvl~ek~~~ 67 (69)
T PRK14549 1 MAILRASEIREMSPEEREEKLEELKLELLKERAQAAMGGAPENPGRIREIRRTIARILTIQREKKRE 67 (69)
T ss_pred CCcCcHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999999999999944999999999999999999999999865
No 4
>COG0255 RpmC Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=6.6e-23 Score=135.70 Aligned_cols=62 Identities=42% Similarity=0.527 Sum_probs=59.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 033748 7 HELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAAL 69 (112)
Q Consensus 7 ~ELR~lS~eEL~~~L~elkkELf~LRfq~~~g~~l~np~~ir~~RKdIARIlTvl~ek~~~~~ 69 (112)
+|||+||.+||.+++.++++|||+||||.++| +++|||.|+.+|||||||+||++|++....
T Consensus 6 ~elR~~s~eeL~~~l~eLK~ELf~LR~q~a~g-~l~n~~~ir~vRr~IARi~Tv~~E~~~~~~ 67 (69)
T COG0255 6 KELREKSVEELEEELRELKKELFNLRFQLATG-QLENPHRIREVRRDIARILTVLREKELEAA 67 (69)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 59999999999999999999999999999999 699999999999999999999999987654
No 5
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=99.87 E-value=4.8e-22 Score=129.41 Aligned_cols=64 Identities=38% Similarity=0.487 Sum_probs=61.4
Q ss_pred CChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 033748 4 IKVHELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAA 68 (112)
Q Consensus 4 mK~~ELR~lS~eEL~~~L~elkkELf~LRfq~~~g~~l~np~~ir~~RKdIARIlTvl~ek~~~~ 68 (112)
|+++||+++|.+||.+++.++++|||++||++++| +++|||.|+.+||+||||+||++|++.+.
T Consensus 1 Mk~~elr~ls~~eL~~~l~~lkkeL~~lR~~~~~~-~~~n~~~i~~~rk~IARi~Tvl~er~~~~ 64 (66)
T PRK00306 1 MKAKELRELSVEELNEKLLELKKELFNLRFQKATG-QLENTHRLREVRRDIARIKTVLRERELGA 64 (66)
T ss_pred CCHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCcCcHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 78999999999999999999999999999999999 69999999999999999999999998754
No 6
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=99.86 E-value=1.1e-21 Score=125.09 Aligned_cols=58 Identities=40% Similarity=0.564 Sum_probs=56.2
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHH
Q 033748 6 VHELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQK 64 (112)
Q Consensus 6 ~~ELR~lS~eEL~~~L~elkkELf~LRfq~~~g~~l~np~~ir~~RKdIARIlTvl~ek 64 (112)
++||++||.+||.+++.++++|||+||||+++| +++|||.|+.+||+||||+|+++||
T Consensus 1 ~~elr~ls~~eL~~~l~elk~eL~~Lr~q~~~~-~l~n~~~ir~~Rr~IARi~Tvl~er 58 (58)
T PF00831_consen 1 AKELRELSDEELQEKLEELKKELFNLRFQKATG-QLENPHRIREIRRDIARILTVLRER 58 (58)
T ss_dssp CHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHS-SSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc-ccccccHHHHHHHHHHHHHHHHhcC
Confidence 479999999999999999999999999999999 7899999999999999999999986
No 7
>PRK00461 rpmC 50S ribosomal protein L29; Reviewed
Probab=99.85 E-value=4.1e-21 Score=131.98 Aligned_cols=67 Identities=36% Similarity=0.476 Sum_probs=62.8
Q ss_pred ChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033748 5 KVHELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREA 72 (112)
Q Consensus 5 K~~ELR~lS~eEL~~~L~elkkELf~LRfq~~~g~~l~np~~ir~~RKdIARIlTvl~ek~~~~~~~~ 72 (112)
+++||++||.+||.+++.++++|||+|||++++| +++|||+|+.+||+||||+||++|++.++.-+.
T Consensus 1 ~~~elR~lS~eEL~e~L~elkkELf~LR~q~atg-ql~n~~~ir~iRR~IARilTvl~Ek~~~~~~~~ 67 (87)
T PRK00461 1 LFKELRKKSVEELEKLVIELKAELFTLRFKNATG-SLDQTHKIKEIRKDIARILTILNERELEEKENN 67 (87)
T ss_pred ChHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-cccccHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4689999999999999999999999999999999 799999999999999999999999998876543
No 8
>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat
Probab=99.83 E-value=9.6e-21 Score=120.19 Aligned_cols=57 Identities=44% Similarity=0.577 Sum_probs=54.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHH
Q 033748 7 HELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQK 64 (112)
Q Consensus 7 ~ELR~lS~eEL~~~L~elkkELf~LRfq~~~g~~l~np~~ir~~RKdIARIlTvl~ek 64 (112)
+||+++|.+||.+++.++++|||+||||+++| +++|||.|+.+||+||||+||++|+
T Consensus 1 ~eir~ls~~eL~~~l~~l~~elf~Lr~q~~~~-~~~~~~~~~~~Rr~IARi~Til~er 57 (57)
T cd00427 1 KELREKSDEELQEKLDELKKELFNLRFQKATG-QLENPHRIRKVRKDIARIKTVLNEK 57 (57)
T ss_pred ChHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCcCcHHHHHHHHHHHHHHHHHHcC
Confidence 48999999999999999999999999999999 6999999999999999999999975
No 9
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=99.83 E-value=1.2e-20 Score=119.13 Aligned_cols=55 Identities=49% Similarity=0.625 Sum_probs=53.1
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHH
Q 033748 8 ELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQ 63 (112)
Q Consensus 8 ELR~lS~eEL~~~L~elkkELf~LRfq~~~g~~l~np~~ir~~RKdIARIlTvl~e 63 (112)
||+++|.+||.+++.++++|||+|||++++| +++|||.|+.+|||||||+||++|
T Consensus 1 elr~~s~~EL~~~l~~lr~eLf~Lr~~~~~~-~~~~~~~i~~~Rk~IARi~Tvl~e 55 (55)
T TIGR00012 1 ELREKSKEELAKKLDELKKELFELRFQKATG-QLAKPHRIRQVRRDIARLLTVLRE 55 (55)
T ss_pred CHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CcccchHHHHHHHHHHHHHHHHhC
Confidence 6899999999999999999999999999999 789999999999999999999985
No 10
>PF06984 MRP-L47: Mitochondrial 39-S ribosomal protein L47 (MRP-L47); InterPro: IPR010729 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the N-terminal region (approximately 8 residues) of the eukaryotic mitochondrial 39-S ribosomal protein L47 (MRP-L47). Mitochondrial ribosomal proteins (MRPs) are the counterparts of the cytoplasmic ribosomal proteins, in that they fulfil similar functions in protein biosynthesis. However, they are distinct in number, features and primary structure [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005761 mitochondrial ribosome
Probab=96.67 E-value=0.013 Score=40.43 Aligned_cols=60 Identities=25% Similarity=0.281 Sum_probs=40.6
Q ss_pred ChHHHhcCCHHHHHHH---HHHHHHHHHHHHH-HHHHcCCCCcchhHHHHHHHHHHHHHHHHHH
Q 033748 5 KVHELRQKSKVDLLNQ---LKELKAELALLRV-AKVTGGAPNKLSKIKVVRLSIAQVLTVISQK 64 (112)
Q Consensus 5 K~~ELR~lS~eEL~~~---L~elkkELf~LRf-q~~~g~~l~np~~ir~~RKdIARIlTvl~ek 64 (112)
.+.|||.+|-+||.+. +..-+.-|...+. ....+...++|.++..++++-+||++|++||
T Consensus 24 t~~ELR~KS~eDLHkLWyv~lKERN~L~T~~~e~~r~~~~~~~~~r~~kV~~sM~~Ik~Vl~ER 87 (87)
T PF06984_consen 24 TAEELRRKSFEDLHKLWYVCLKERNMLLTEEYEARRQGEGMPSPERLEKVRKSMARIKHVLTER 87 (87)
T ss_pred cHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhcC
Confidence 5789999999999883 1122222221111 1111212578999999999999999999986
No 11
>KOG3331 consensus Mitochondrial/chloroplast ribosomal protein L4/L29 [Translation, ribosomal structure and biogenesis]
Probab=94.38 E-value=0.33 Score=38.32 Aligned_cols=63 Identities=25% Similarity=0.295 Sum_probs=47.8
Q ss_pred ChHHHhcCCHHHHHHHHHHH---HHHHHHHH--HHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 033748 5 KVHELRQKSKVDLLNQLKEL---KAELALLR--VAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAA 68 (112)
Q Consensus 5 K~~ELR~lS~eEL~~~L~el---kkELf~LR--fq~~~g~~l~np~~ir~~RKdIARIlTvl~ek~~~~ 68 (112)
++.|||=+|-.||...==.. +.-|+..| .+...| +..||-+|-.+|...+||.+|++||..+-
T Consensus 67 ~aeELR~KS~nDLH~LWYvcLkErNmL~T~~~~~k~~~~-~~PnpERi~kV~~TM~~I~~Vl~ER~~Ay 134 (213)
T KOG3331|consen 67 SAEELRLKSFNDLHKLWYVCLKERNMLATMRHELKNIVG-SFPNPERIDKVRTTMWRIEHVLNERNLAY 134 (213)
T ss_pred chHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999998764333 33344433 233445 78999999999999999999999998763
No 12
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=74.71 E-value=4 Score=26.27 Aligned_cols=30 Identities=30% Similarity=0.299 Sum_probs=24.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 033748 7 HELRQKSKVDLLNQLKELKAELALLRVAKV 36 (112)
Q Consensus 7 ~ELR~lS~eEL~~~L~elkkELf~LRfq~~ 36 (112)
.+|..+|.+||.+.|.-|+.|.-.++-...
T Consensus 16 ~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~ 45 (59)
T PF06698_consen 16 EDLSLLSVEELEERIALLEAEIARLEAAIA 45 (59)
T ss_pred CCchhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999888777665443
No 13
>PF08188 Protamine_3: Spermatozal protamine family; InterPro: IPR012601 This entry consists of the spermatozal protamines. Spermatozal protamines play an important role in remodelling of the sperm chromatin during mammalian spermiogenesis. Nuclear elongation and chromatin condensation are concomitant with modifications in the basic protein complement associated with DNA. Somatic histones are initially replaced by testis-specific histone variants, then by transitional proteins, and ultimately by protamines [].; GO: 0003677 DNA binding, 0035092 sperm chromatin condensation, 0000228 nuclear chromosome
Probab=74.45 E-value=11 Score=23.09 Aligned_cols=42 Identities=26% Similarity=0.395 Sum_probs=31.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCCC--CCCCCCc
Q 033748 44 LSKIKVVRLSIAQVLTVISQKQKAA-LREAYKNKKF--LPLDLRP 85 (112)
Q Consensus 44 p~~ir~~RKdIARIlTvl~ek~~~~-~~~~y~~~~~--~p~~lrp 85 (112)
-|.++.-|+++.|-+|--+++++.+ +-.-|+.-.+ .|..+||
T Consensus 4 rhsmkkkrksvrrrktrknqrkrknslgrsfkahgflkqpprfrp 48 (48)
T PF08188_consen 4 RHSMKKKRKSVRRRKTRKNQRKRKNSLGRSFKAHGFLKQPPRFRP 48 (48)
T ss_pred hhHHHHHHHHHHHHHHHhhHHHhhhhhhhHHHhcccccCCCCCCC
Confidence 3778889999999999999988754 4455555555 7777776
No 14
>PF10044 Ret_tiss: Retinal tissue protein; InterPro: IPR018737 Rtp is a family of proteins of approximately 112 amino acids in length which is conserved from nematodes to humans. The proposed tertiary structure is of almost entirely alpha helix interrupted only by loops located at proline residues. Three sites in the protein sequence reveal two types of possible post-translation modification. A serine residue, at position 41, is a candidate for protein kinase C phosphorylation. Glycine residues at position 69 and 91 are probable sites for acetylation by covalent amide linkage of myristate via N-myristoyl transferase. Rtp is differentially expressed in the trout retina between parr and smolt developmental stages (smoltification). It is likely to be a house-keeping protein [].
Probab=56.31 E-value=18 Score=25.28 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=26.5
Q ss_pred ChHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 033748 5 KVHELRQKSKVDLLNQLKELKAELALLRVAK 35 (112)
Q Consensus 5 K~~ELR~lS~eEL~~~L~elkkELf~LRfq~ 35 (112)
++.|+..+|.++|.+++.++..+.++|=..-
T Consensus 51 ~~~eLs~Lt~~~L~~~Ik~L~~~aYqLGl~E 81 (95)
T PF10044_consen 51 KMNELSSLTPDQLIEKIKKLQDEAYQLGLEE 81 (95)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhHHH
Confidence 4678999999999999999999999875443
No 15
>PRK11546 zraP zinc resistance protein; Provisional
Probab=56.24 E-value=65 Score=24.05 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=22.6
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHH
Q 033748 40 APNKLSKIKVVRLSIAQVLTVISQKQK 66 (112)
Q Consensus 40 ~l~np~~ir~~RKdIARIlTvl~ek~~ 66 (112)
...++..|+.+.++|+.+.+-|.+...
T Consensus 84 ~~pD~~kI~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 84 NPPDSSKINAVAKEMENLRQSLDELRV 110 (143)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778899999999999998887643
No 16
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=53.95 E-value=35 Score=21.84 Aligned_cols=57 Identities=18% Similarity=0.232 Sum_probs=38.5
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHH
Q 033748 6 VHELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQK 64 (112)
Q Consensus 6 ~~ELR~lS~eEL~~~L~elkkELf~LRfq~~~g~~l~np~~ir~~RKdIARIlTvl~ek 64 (112)
+.+|+... ..|...+.+...+|-.+-+.+-.. -+.-+..|..++.++-.+.+.+.+-
T Consensus 21 ~~~i~~~~-~~L~~~i~~~~~eLr~~V~~nY~~-fI~as~~I~~m~~~~~~l~~~l~~l 77 (87)
T PF08700_consen 21 IKEIRQLE-NKLRQEIEEKDEELRKLVYENYRD-FIEASDEISSMENDLSELRNLLSEL 77 (87)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444332 456666667777777777777766 5666778888888888887777664
No 17
>PF10655 DUF2482: Hypothetical protein of unknown function (DUF2482); InterPro: IPR018917 This entry is represented by Bacteriophage 80, Orf10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. All the members of this very small, very short family are derived from bacteriophages, of the SA bacteriophages 11, Mu50B, system, and from the Staphylococcal_phi-Mu50B-like_prophages subsystem. All members are hypothetical proteins.
Probab=49.68 E-value=19 Score=25.51 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=24.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHH
Q 033748 7 HELRQKSKVDLLNQLKELKAELALLRVA 34 (112)
Q Consensus 7 ~ELR~lS~eEL~~~L~elkkELf~LRfq 34 (112)
+..++|+.+||...+.+--.||++|-..
T Consensus 3 knyKdMTqeelr~llseK~~ELydL~~e 30 (100)
T PF10655_consen 3 KNYKDMTQEELRDLLSEKNGELYDLANE 30 (100)
T ss_pred chhhhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 4678999999999999999999999754
No 18
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=46.84 E-value=35 Score=27.37 Aligned_cols=54 Identities=19% Similarity=0.227 Sum_probs=38.6
Q ss_pred cCCHHHHHHHHHHHHHHHHH----HHHHHHHcCCCC-----cchhHHHHHHHHHHHHHHHHHH
Q 033748 11 QKSKVDLLNQLKELKAELAL----LRVAKVTGGAPN-----KLSKIKVVRLSIAQVLTVISQK 64 (112)
Q Consensus 11 ~lS~eEL~~~L~elkkELf~----LRfq~~~g~~l~-----np~~ir~~RKdIARIlTvl~ek 64 (112)
.-+.+++..++...++++-+ -|++.++...+. ....++.+..||-|+-|+++--
T Consensus 45 k~dve~l~~e~E~~~k~l~de~~E~r~~~~tke~lk~l~~~~~~~f~a~~edi~rlE~~i~~l 107 (231)
T COG5493 45 KQDVEELRKETEQRQKELADEKLEVRKQKATKEDLKLLQRFQEEEFRATKEDIKRLETIITGL 107 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888877765 677777662221 2345888999999999988753
No 19
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=45.12 E-value=14 Score=22.36 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=13.8
Q ss_pred HHhcCCHHHHHHHHHHH
Q 033748 8 ELRQKSKVDLLNQLKEL 24 (112)
Q Consensus 8 ELR~lS~eEL~~~L~el 24 (112)
|+..+|++||.+++.+.
T Consensus 2 d~~~LSd~eL~~~L~~~ 18 (44)
T smart00540 2 DVDRLSDAELRAELKQY 18 (44)
T ss_pred chhHcCHHHHHHHHHHc
Confidence 67889999999887653
No 20
>PRK10515 hypothetical protein; Provisional
Probab=43.38 E-value=1.1e+02 Score=21.31 Aligned_cols=70 Identities=16% Similarity=0.189 Sum_probs=42.1
Q ss_pred CChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 033748 4 IKVHELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLP 80 (112)
Q Consensus 4 mK~~ELR~lS~eEL~~~L~elkkELf~LRfq~~~g~~l~np~~ir~~RKdIARIlTvl~ek~~~~~~~~y~~~~~~p 80 (112)
|+.-.+.+|+..|=. +++..|-+.| ...|..+.| ++-..+|++|--=.+.-+|.....++..-+..++.|
T Consensus 3 m~~Lt~keMTEseqr----evkt~L~~aR--~~~gR~LTN-aE~NkvK~e~i~ki~aere~~aK~~R~~kK~~~~kp 72 (90)
T PRK10515 3 LPRITQKEMTEREQR----ELKTLLDRAR--IAHGRPLTN-SETNSIKKEYIDKLMAEREAEAKKARQLKKKQAYKP 72 (90)
T ss_pred chhHHHHHhhHHHHH----HHHHHHHHHH--HHcCCccch-hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 555577778876643 3444444444 445666787 666777777643334445555556666666667766
No 21
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=41.22 E-value=1.2e+02 Score=23.06 Aligned_cols=49 Identities=27% Similarity=0.300 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHH
Q 033748 14 KVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQ 63 (112)
Q Consensus 14 ~eEL~~~L~elkkELf~LRfq~~~g~~l~np~~ir~~RKdIARIlTvl~e 63 (112)
..++.+++.++++++-.|.-+...- .-.+|..|..+++++...+.-.+.
T Consensus 105 R~~~l~~l~~l~~~~~~l~~el~~~-~~~Dp~~i~~~~~~~~~~~~~anr 153 (188)
T PF03962_consen 105 REELLEELEELKKELKELKKELEKY-SENDPEKIEKLKEEIKIAKEAANR 153 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777766644 357888999998888877766654
No 22
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=40.05 E-value=1.5e+02 Score=21.64 Aligned_cols=47 Identities=21% Similarity=0.212 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHH
Q 033748 14 KVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQ 63 (112)
Q Consensus 14 ~eEL~~~L~elkkELf~LRfq~~~g~~l~np~~ir~~RKdIARIlTvl~e 63 (112)
..+|.+++.+++.+.-.++-..+. +........++..|+.+..-+.+
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~---L~~~~t~~el~~~i~~l~~e~~~ 127 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELAS---LSSEPTNEELREEIEELEEEIEE 127 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHH
Confidence 566777777777777777655552 23333444566666666555443
No 23
>PF08621 RPAP1_N: RPAP1-like, N-terminal; InterPro: IPR013930 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the N-terminal region of RPAP-1 that is conserved from yeast to humans.
Probab=33.32 E-value=47 Score=20.40 Aligned_cols=21 Identities=19% Similarity=0.184 Sum_probs=15.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHH
Q 033748 7 HELRQKSKVDLLNQLKELKAE 27 (112)
Q Consensus 7 ~ELR~lS~eEL~~~L~elkkE 27 (112)
.-|.+||.+|+.++-.++...
T Consensus 10 ~rL~~MS~eEI~~er~eL~~~ 30 (49)
T PF08621_consen 10 ARLASMSPEEIEEEREELLES 30 (49)
T ss_pred HHHHhCCHHHHHHHHHHHHHh
Confidence 347899999998877766543
No 24
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=33.20 E-value=28 Score=19.88 Aligned_cols=10 Identities=60% Similarity=0.999 Sum_probs=7.5
Q ss_pred HHHHHHHhhC
Q 033748 103 LLLLFFLIFF 112 (112)
Q Consensus 103 ~~~~~~~~~~ 112 (112)
|.++||.|||
T Consensus 14 lgiiFFAIfF 23 (31)
T PRK11875 14 LVTLFFAIAF 23 (31)
T ss_pred HHHHHHhhhc
Confidence 5567888886
No 25
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=32.33 E-value=1e+02 Score=22.43 Aligned_cols=43 Identities=12% Similarity=0.068 Sum_probs=29.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHcCC---CCcchhHHHHHHH
Q 033748 11 QKSKVDLLNQLKELKAELALLRVAKVTGGA---PNKLSKIKVVRLS 53 (112)
Q Consensus 11 ~lS~eEL~~~L~elkkELf~LRfq~~~g~~---l~np~~ir~~RKd 53 (112)
++|.|||.++|..|+-|=-.|+=+-..|+. ..+|..+...-|+
T Consensus 2 ~~t~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe 47 (118)
T PF05812_consen 2 DMTMEELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKE 47 (118)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHH
Confidence 578999999999999999999888776631 2455555555555
No 26
>PF10845 DUF2576: Protein of unknown function (DUF2576); InterPro: IPR022556 The function of this viral family of proteins is unknown. The entry contains Orf5 from Autographa californica nuclear polyhedrosis virus (AcMNPV).
Probab=32.15 E-value=80 Score=19.59 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=24.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHc
Q 033748 11 QKSKVDLLNQLKELKAELALLRVAKVTG 38 (112)
Q Consensus 11 ~lS~eEL~~~L~elkkELf~LRfq~~~g 38 (112)
+.+.++|..++.+|+..+-+|.-...+|
T Consensus 10 dydreqlrrelnsLR~~vhelctRs~t~ 37 (48)
T PF10845_consen 10 DYDREQLRRELNSLRRSVHELCTRSTTG 37 (48)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4578999999999999999999888777
No 27
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=31.92 E-value=2.6e+02 Score=22.23 Aligned_cols=54 Identities=17% Similarity=0.234 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHH--HHHHHHHHHhh
Q 033748 13 SKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQ--KQKAALREAYK 74 (112)
Q Consensus 13 S~eEL~~~L~elkkELf~LRfq~~~g~~l~np~~ir~~RKdIARIlTvl~e--k~~~~~~~~y~ 74 (112)
|.|||...|.-.--||=.+|+... .++|.-+-+|++++-+++. +++.+++.++.
T Consensus 2 s~EELRq~Ll~TTlELE~~k~~A~--------EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq 57 (214)
T PF07795_consen 2 SMEELRQKLLYTTLELEATKMEAN--------EELRKREEQIAHLKDLLKKAYQERDEAREQLQ 57 (214)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888877777654 5677777888888777765 77788876654
No 28
>CHL00031 psbT photosystem II protein T
Probab=30.91 E-value=29 Score=20.08 Aligned_cols=11 Identities=55% Similarity=1.023 Sum_probs=7.9
Q ss_pred HHHHHHHHhhC
Q 033748 102 FLLLLFFLIFF 112 (112)
Q Consensus 102 ~~~~~~~~~~~ 112 (112)
-|-++||.|||
T Consensus 13 tlgilFFAI~F 23 (33)
T CHL00031 13 TLGIIFFAIFF 23 (33)
T ss_pred HHHHHHHhhee
Confidence 35577888886
No 29
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbT found in PSII, which is thought to be associated with the D1 (PsbA) - D2 (PsbD) heterodimer. PsbT may be involved in the formation and/or stabilisation of dimeric PSII complexes, because in the absence of this protein dimeric PSII complexes were found to be less abundant. Furthermore, although PsbT does not confer photo-protection, it is required for the efficient recovery of photo-damaged PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3BZ1_T 1S5L_t 2AXT_t 3KZI_T 3PRQ_T 3BZ2_T 3PRR_T 4FBY_g 3A0H_t 3A0B_T ....
Probab=30.87 E-value=37 Score=19.08 Aligned_cols=11 Identities=64% Similarity=1.059 Sum_probs=8.0
Q ss_pred HHHHHHHHhhC
Q 033748 102 FLLLLFFLIFF 112 (112)
Q Consensus 102 ~~~~~~~~~~~ 112 (112)
-|.++||.|||
T Consensus 13 tlgilffAI~F 23 (29)
T PF01405_consen 13 TLGILFFAIFF 23 (29)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHhhhhc
Confidence 35678888887
No 30
>PF11656 DUF3811: YjbD family (DUF3811); InterPro: IPR020317 This entry contains proteins with no known function.
Probab=30.83 E-value=1.9e+02 Score=20.12 Aligned_cols=66 Identities=18% Similarity=0.253 Sum_probs=38.9
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHH--HHHHHHhhCCCCCC
Q 033748 6 VHELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQK--AALREAYKNKKFLP 80 (112)
Q Consensus 6 ~~ELR~lS~eEL~~~L~elkkELf~LRfq~~~g~~l~np~~ir~~RKdIARIlTvl~ek~~--~~~~~~y~~~~~~p 80 (112)
.-.+.+|++.|-. +++-.|=+. .++.|..+.| ++-..++.+| |..|+.+++. ..++..-+..++.|
T Consensus 3 kLT~keMTeseq~----evkt~L~~a--Rk~~gR~LTN-aE~NkiKde~--i~ki~~ere~~aKkar~ekkk~k~~p 70 (87)
T PF11656_consen 3 KLTLKEMTESEQR----EVKTLLDQA--RKNLGRELTN-AEQNKIKDEI--IDKIMAEREKAAKKARAEKKKNKVKP 70 (87)
T ss_pred cchHHHhhHHHHH----HHHHHHHHH--HHHcCCccch-hhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 3345566665543 233333333 3455767787 7778888887 4555555554 45566666667777
No 31
>PHA03155 hypothetical protein; Provisional
Probab=30.77 E-value=2e+02 Score=20.96 Aligned_cols=42 Identities=19% Similarity=0.240 Sum_probs=31.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHH
Q 033748 11 QKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLS 53 (112)
Q Consensus 11 ~lS~eEL~~~L~elkkELf~LRfq~~~g~~l~np~~ir~~RKd 53 (112)
++|.|||.++|..|+-|=-.|+-+-..|+..+. ..+...-|+
T Consensus 7 ~~tvEeLaaeL~kL~~ENK~LKkkl~~~~~p~d-~~LT~~qKe 48 (115)
T PHA03155 7 CADVEELEKELQKLKIENKALKKKLLQHGNPED-ELLTPAQKD 48 (115)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHccCCCCc-cccCHHHHH
Confidence 789999999999999999999988876643332 334444444
No 32
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=28.16 E-value=93 Score=18.80 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=16.6
Q ss_pred hcCCHHHHHHHHHHHHHHHHH
Q 033748 10 RQKSKVDLLNQLKELKAELAL 30 (112)
Q Consensus 10 R~lS~eEL~~~L~elkkELf~ 30 (112)
++.|.+++.++++.+++.|.+
T Consensus 23 ~g~~~eeIe~kv~~~R~~L~~ 43 (46)
T PF08312_consen 23 QGYSEEEIEEKVDELRKKLLE 43 (46)
T ss_dssp HT--HHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHh
Confidence 567899999999999998865
No 33
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=26.92 E-value=56 Score=20.54 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=17.5
Q ss_pred ChHHH-hcCCHHHHHHHHHHHHH
Q 033748 5 KVHEL-RQKSKVDLLNQLKELKA 26 (112)
Q Consensus 5 K~~EL-R~lS~eEL~~~L~elkk 26 (112)
+..|+ +++|.+||.+.|..|..
T Consensus 2 ~~~Dls~~lTeEEl~~~i~~L~~ 24 (61)
T TIGR01639 2 KYNDLSKKLSKEELNELINSLDE 24 (61)
T ss_pred ChhHHhHHccHHHHHHHHHhhcC
Confidence 34566 58999999999998853
No 34
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=26.42 E-value=1.6e+02 Score=19.43 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHHH
Q 033748 14 KVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKV 49 (112)
Q Consensus 14 ~eEL~~~L~elkkELf~LRfq~~~g~~l~np~~ir~ 49 (112)
.+++..+...+..|--+|+.+.++ +.+|.+|..
T Consensus 44 l~~l~~~~~~l~~e~~~L~lE~~~---l~~~~rIe~ 76 (97)
T PF04999_consen 44 LQQLEKEIDQLQEENERLRLEIAT---LSSPSRIER 76 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hhCHHHHHH
Confidence 577888888888888888888884 467777643
No 35
>PF08135 EPV_E5: Major transforming protein E5 family; InterPro: IPR012555 This family consists of the major transforming proteins (E5) of the bovine papilloma virus (BPV). The equine sarcoid is one of the most common dermatological lesion in equids. It is a benign, locally invasive dermal fibroblastic lesion and studies have shown an association of the lesions with BPV. E5 is a short hydrophobic membrane protein localising to the Golgi apparatus and other intracellular membranes. It binds to and constitutively activates the platelet-derived growth factor-beta in transformed cells. This stimulation activates a receptor signalling cascade which results in an intracellular growth stimulatory signal [].
Probab=25.56 E-value=40 Score=20.54 Aligned_cols=11 Identities=64% Similarity=1.325 Sum_probs=4.9
Q ss_pred HHHHHHHHhhC
Q 033748 102 FLLLLFFLIFF 112 (112)
Q Consensus 102 ~~~~~~~~~~~ 112 (112)
+++++|.++||
T Consensus 18 L~LL~FlL~fF 28 (44)
T PF08135_consen 18 LLLLVFLLFFF 28 (44)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 36
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=24.80 E-value=1.1e+02 Score=20.19 Aligned_cols=51 Identities=12% Similarity=-0.033 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHc-CCC--CcchhHHHHHHHHHHHHHHHHH
Q 033748 13 SKVDLLNQLKELKAELALLRVAKVTG-GAP--NKLSKIKVVRLSIAQVLTVISQ 63 (112)
Q Consensus 13 S~eEL~~~L~elkkELf~LRfq~~~g-~~l--~np~~ir~~RKdIARIlTvl~e 63 (112)
|.-|..+.++.+++|=|+|++.-..= ..+ ..|..+..+-+.-..+++.+..
T Consensus 1 tlrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~ 54 (75)
T PF07989_consen 1 TLREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVES 54 (75)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 45678899999999999998753311 001 1234455444444445555444
No 37
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=23.99 E-value=3.7e+02 Score=21.87 Aligned_cols=49 Identities=18% Similarity=0.147 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHH
Q 033748 13 SKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVIS 62 (112)
Q Consensus 13 S~eEL~~~L~elkkELf~LRfq~~~g~~l~np~~ir~~RKdIARIlTvl~ 62 (112)
..++|..+|.+..+|+--|...+-.+ -+.+..+|.++.+.|.++++-..
T Consensus 89 ql~~l~akI~k~~~el~~L~TYkD~E-YPvK~vqIa~L~rqlq~lk~~qq 137 (258)
T PF15397_consen 89 QLEQLDAKIQKTQEELNFLSTYKDHE-YPVKAVQIANLVRQLQQLKDSQQ 137 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999977 67788899999999999987543
No 38
>PHA03162 hypothetical protein; Provisional
Probab=23.61 E-value=2e+02 Score=21.44 Aligned_cols=29 Identities=24% Similarity=0.264 Sum_probs=25.1
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHc
Q 033748 10 RQKSKVDLLNQLKELKAELALLRVAKVTG 38 (112)
Q Consensus 10 R~lS~eEL~~~L~elkkELf~LRfq~~~g 38 (112)
.++|.|||.++|..|+-|=-.|+=+-..+
T Consensus 11 ~~~tmEeLaaeL~kLqmENK~LKkkl~~~ 39 (135)
T PHA03162 11 AQPTMEDLAAEIAKLQLENKALKKKIKEG 39 (135)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36899999999999999999998877555
No 39
>PRK10204 hypothetical protein; Provisional
Probab=23.47 E-value=50 Score=21.02 Aligned_cols=12 Identities=33% Similarity=0.335 Sum_probs=10.0
Q ss_pred hhcCHHHHHHHH
Q 033748 93 RRLTKHQVLFLL 104 (112)
Q Consensus 93 ~~l~~~~~~~~~ 104 (112)
.+||+||+..|.
T Consensus 2 ~kLTDkQKsrlW 13 (55)
T PRK10204 2 KKLTDKQKSRLW 13 (55)
T ss_pred ccchHHHHHHHH
Confidence 479999999875
No 40
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=23.27 E-value=55 Score=19.97 Aligned_cols=9 Identities=78% Similarity=0.988 Sum_probs=5.2
Q ss_pred HHHHHHHHh
Q 033748 102 FLLLLFFLI 110 (112)
Q Consensus 102 ~~~~~~~~~ 110 (112)
-|+|+|||-
T Consensus 6 sllLlfflG 14 (46)
T PF03032_consen 6 SLLLLFFLG 14 (46)
T ss_pred HHHHHHHHH
Confidence 356666664
No 41
>PF10200 Ndufs5: NADH:ubiquinone oxidoreductase, NDUFS5-15kDa; InterPro: IPR019342 Proteins in this entry form part of the NADH:ubiquinone oxidoreductase complex I. Complex I is the first multisubunit inner membrane protein complex of the mitochondrial electron transport chain and it transfers two electrons from NADH to ubiquinone. The mammalian complex I is composed of 45 different subunits. The proteins in this entry represent a component of the iron-sulphur (IP) fragment of the enzyme, that is not involved in catalysis. These proteins carry four highly conserved cysteine residues, but these do not appear to be in a configuration which would favour metal binding, so the exact function of the protein is uncertain [].
Probab=22.92 E-value=1.5e+02 Score=20.72 Aligned_cols=33 Identities=12% Similarity=0.195 Sum_probs=23.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 033748 43 KLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLP 80 (112)
Q Consensus 43 np~~ir~~RKdIARIlTvl~ek~~~~~~~~y~~~~~~p 80 (112)
+-.+.-.-+|.++|+.++..|++ ++++..++-|
T Consensus 62 Dy~EClh~~Ke~~R~~aI~kqR~-----K~~keGk~tp 94 (96)
T PF10200_consen 62 DYYECLHHTKEMKRMRAIRKQRD-----KQIKEGKYTP 94 (96)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHH-----HHHHccCCCC
Confidence 33445567899999999998775 4556666655
No 42
>PRK11546 zraP zinc resistance protein; Provisional
Probab=22.72 E-value=1.6e+02 Score=21.98 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033748 15 VDLLNQLKELKAELALLRVAKV 36 (112)
Q Consensus 15 eEL~~~L~elkkELf~LRfq~~ 36 (112)
..|..++.+|+.+|++.|++..
T Consensus 92 ~aL~kEI~~Lr~kL~e~r~~~~ 113 (143)
T PRK11546 92 NAVAKEMENLRQSLDELRVKRD 113 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888888888777544
No 43
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=22.14 E-value=1.4e+02 Score=18.62 Aligned_cols=17 Identities=29% Similarity=0.311 Sum_probs=11.4
Q ss_pred HhcCCHHHHHHHHHHHH
Q 033748 9 LRQKSKVDLLNQLKELK 25 (112)
Q Consensus 9 LR~lS~eEL~~~L~elk 25 (112)
++.+|.+||...+..+-
T Consensus 5 Lk~ls~~eL~~rl~~LD 21 (49)
T PF11629_consen 5 LKFLSYEELQQRLASLD 21 (49)
T ss_dssp GGGS-HHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHhCC
Confidence 56778888887776553
No 44
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=21.72 E-value=47 Score=21.49 Aligned_cols=16 Identities=31% Similarity=0.648 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhhC
Q 033748 97 KHQVLFLLLLFFLIFF 112 (112)
Q Consensus 97 ~~~~~~~~~~~~~~~~ 112 (112)
-.-..-.||+-|+|||
T Consensus 7 ~~mtriVLLISfiIlf 22 (59)
T PF11119_consen 7 SRMTRIVLLISFIILF 22 (59)
T ss_pred chHHHHHHHHHHHHHH
Confidence 3344556777777776
No 45
>PRK03717 ribonuclease P protein component 2; Provisional
Probab=21.20 E-value=47 Score=23.65 Aligned_cols=12 Identities=50% Similarity=0.603 Sum_probs=10.2
Q ss_pred CCCCCCCCCchh
Q 033748 76 KKFLPLDLRPKK 87 (112)
Q Consensus 76 ~~~~p~~lrpk~ 87 (112)
.|++|++||+|.
T Consensus 5 ~k~lpp~lR~K~ 16 (120)
T PRK03717 5 PKTLPPTLRDKN 16 (120)
T ss_pred cccCCCcccccc
Confidence 478999999985
No 46
>TIGR02929 anfG_nitrog Fe-only nitrogenase, delta subunit. Nitrogenase, also called dinitrogenase, is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfG, represents the delta subunit of the Fe-only alternative nitrogenase. It is homologous to VnfG, the delta subunit of the V-containing (vanadium) nitrogenase.
Probab=20.94 E-value=97 Score=22.34 Aligned_cols=34 Identities=12% Similarity=0.159 Sum_probs=26.6
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 033748 9 LRQKSKVDLLNQLKELKAELALLRVAKVTGGAPN 42 (112)
Q Consensus 9 LR~lS~eEL~~~L~elkkELf~LRfq~~~g~~l~ 42 (112)
|.+||.+|+...+..++..+-.+-+..+..+.++
T Consensus 72 ~~~~~kdei~~l~~~lk~rl~~ltItgSlN~ELt 105 (109)
T TIGR02929 72 LEDMTKDEIKTLMQALHEKMDHLTIKGSLNLELT 105 (109)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhcccccchhhc
Confidence 5689999999999999999988776655553333
No 47
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=20.85 E-value=92 Score=25.62 Aligned_cols=28 Identities=14% Similarity=0.122 Sum_probs=23.7
Q ss_pred ChHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 033748 5 KVHELRQKSKVDLLNQLKELKAELALLR 32 (112)
Q Consensus 5 K~~ELR~lS~eEL~~~L~elkkELf~LR 32 (112)
...||+++|.+||.+.-.|.|..+.+--
T Consensus 6 ~p~dlk~ls~~eL~~La~eiR~~ii~~v 33 (270)
T PF13292_consen 6 SPEDLKKLSIEELEQLAQEIREFIIETV 33 (270)
T ss_dssp SHHHHTTS-GGGHHHHHHHHHHHHHHHC
T ss_pred CHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999988753
No 48
>PF08838 DUF1811: Protein of unknown function (DUF1811); InterPro: IPR014938 This entry consists uncharacterised bacterial proteins. Some of the proteins are annotated as being transcriptional regulators (see Q4MQL7 from SWISSPROT, Q65MA2 from SWISSPROT). The structure of one of the proteins has revealed a beta-barrel like structure with helix-turn-helix like motif. ; PDB: 2YXY_A 1SF9_A.
Probab=20.83 E-value=2e+02 Score=20.42 Aligned_cols=40 Identities=15% Similarity=0.157 Sum_probs=23.6
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHH
Q 033748 8 ELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSI 54 (112)
Q Consensus 8 ELR~lS~eEL~~~L~elkkELf~LRfq~~~g~~l~np~~ir~~RKdI 54 (112)
-..+||..||..++..|+.+--+.. +..+.+++-.+.+.|
T Consensus 3 rySeMs~~EL~~Ei~~L~ekarKAE-------q~G~~nE~aV~erK~ 42 (102)
T PF08838_consen 3 RYSEMSEEELRQEIARLKEKARKAE-------QLGIVNEYAVYERKI 42 (102)
T ss_dssp HHHC--HHHHHHHHHHHHHHHHHHH-------HCT-HHHHHHHHHHH
T ss_pred chhhcCHHHHHHHHHHHHHHHHHHH-------HcCCccHHHHHHHHH
Confidence 3578999999999999987653322 234445555544444
No 49
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=20.50 E-value=4.7e+02 Score=21.22 Aligned_cols=52 Identities=19% Similarity=0.153 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 033748 13 SKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQ 65 (112)
Q Consensus 13 S~eEL~~~L~elkkELf~LRfq~~~g~~l~np~~ir~~RKdIARIlTvl~ek~ 65 (112)
-..++.+....+..++-.++-....- ...++..+..+|..++.....+.+++
T Consensus 178 ~~~~l~~~~~~L~~e~~~Lk~~~~e~-~~~D~~eL~~lr~eL~~~~~~i~~~k 229 (325)
T PF08317_consen 178 LLPKLRERKAELEEELENLKQLVEEI-ESCDQEELEALRQELAEQKEEIEAKK 229 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-hhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777888888888888766644 25677999999999998888888543
No 50
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=20.45 E-value=1.2e+02 Score=20.85 Aligned_cols=17 Identities=35% Similarity=0.462 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033748 14 KVDLLNQLKELKAELAL 30 (112)
Q Consensus 14 ~eEL~~~L~elkkELf~ 30 (112)
.+||+++|++.|.+|-.
T Consensus 70 ~~eL~~eI~eAK~dLr~ 86 (91)
T PF08285_consen 70 AKELQKEIKEAKADLRK 86 (91)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47899999999998854
No 51
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=20.39 E-value=2.5e+02 Score=18.46 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=22.9
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHc
Q 033748 8 ELRQKSKVDLLNQLKELKAELALLRVAKVTG 38 (112)
Q Consensus 8 ELR~lS~eEL~~~L~elkkELf~LRfq~~~g 38 (112)
+|.=+|+.||.+.|.-++.|+-.+.-+..-.
T Consensus 21 ~LsllsV~El~eRIalLq~EIeRlkAe~~kK 51 (65)
T COG5509 21 ALSLLSVAELEERIALLQAEIERLKAELAKK 51 (65)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3667788888888888888877777665533
Done!