Query 033748
Match_columns 112
No_of_seqs 115 out of 1032
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 09:26:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033748.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033748hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a17_U RPL35, 60S ribosomal pr 100.0 8.2E-42 2.8E-46 246.3 12.0 102 1-102 2-103 (124)
2 2zkr_v 60S ribosomal protein L 100.0 9.9E-42 3.4E-46 245.6 8.2 103 1-103 1-103 (123)
3 3u5e_h 60S ribosomal protein L 100.0 2.8E-40 9.6E-45 237.2 11.4 99 1-102 1-99 (120)
4 3iz5_c 60S ribosomal protein L 100.0 9.9E-41 3.4E-45 240.7 8.1 100 3-103 5-104 (124)
5 1vq8_V 50S ribosomal protein L 99.9 2.6E-26 9E-31 151.2 7.9 68 1-68 1-68 (71)
6 3j21_W 50S ribosomal protein L 99.9 1.9E-24 6.4E-29 142.7 10.5 70 4-73 1-70 (72)
7 1r73_A TM1492, 50S ribosomal p 99.9 3.7E-24 1.3E-28 139.1 8.3 62 4-66 1-62 (66)
8 3v2d_2 50S ribosomal protein L 99.9 3.5E-24 1.2E-28 141.4 7.1 65 3-68 7-71 (72)
9 3jyw_X 60S ribosomal protein L 99.9 2.8E-25 9.6E-30 151.4 1.8 73 2-77 1-73 (86)
10 2zjr_V 50S ribosomal protein L 99.9 2.6E-24 9E-29 140.1 6.1 63 4-67 1-63 (67)
11 3r8s_Y 50S ribosomal protein L 99.9 2.5E-24 8.5E-29 138.8 3.8 61 4-65 1-61 (63)
12 3bbo_Z Ribosomal protein L29; 99.9 2.1E-22 7.3E-27 151.6 6.0 77 1-78 60-138 (173)
13 3twe_A Alpha4H; unknown functi 71.9 4.9 0.00017 21.2 3.1 24 14-37 3-26 (27)
14 3s9g_A Protein hexim1; cyclin 69.2 25 0.00084 24.1 8.2 69 7-78 25-99 (104)
15 2oa5_A Hypothetical protein BQ 48.7 13 0.00044 25.8 2.8 43 11-53 7-50 (110)
16 3okq_A BUD site selection prot 40.4 99 0.0034 22.1 7.2 50 15-64 24-73 (141)
17 2l5g_A GPS2 protein, G protein 38.2 30 0.001 19.7 2.8 25 11-35 7-31 (38)
18 2c0s_A Conserved domain protei 36.2 75 0.0026 19.5 4.8 34 12-49 1-34 (64)
19 3arc_T Photosystem II reaction 34.3 19 0.00065 19.9 1.5 11 102-112 13-23 (32)
20 3bbz_A P protein, phosphoprote 30.5 47 0.0016 19.8 2.9 26 30-56 21-46 (49)
21 1dd4_C 50S ribosomal protein L 29.6 56 0.0019 18.4 3.0 22 6-27 7-28 (40)
22 3viq_B Mating-type switching p 29.4 1.2E+02 0.0041 19.8 6.8 47 12-59 1-49 (85)
23 2hv8_D RAB11 family-interactin 27.0 55 0.0019 20.5 2.9 20 7-26 18-37 (64)
24 2jo8_A Serine/threonine-protei 24.2 82 0.0028 18.9 3.2 20 7-26 5-24 (51)
25 1zav_U 50S ribosomal protein L 23.0 90 0.0031 16.5 2.9 21 7-27 8-28 (30)
26 2yxy_A Hypothetical conserved 21.3 76 0.0026 22.0 3.0 22 9-30 11-32 (115)
27 1sf9_A YFHH hypothetical prote 21.3 84 0.0029 22.2 3.2 42 7-55 27-68 (128)
28 1jei_A Emerin; membrane protei 20.7 30 0.001 20.9 0.7 16 8-23 2-17 (53)
No 1
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=100.00 E-value=8.2e-42 Score=246.34 Aligned_cols=102 Identities=44% Similarity=0.712 Sum_probs=99.7
Q ss_pred CCCCChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 033748 1 MARIKVHELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLP 80 (112)
Q Consensus 1 M~~mK~~ELR~lS~eEL~~~L~elkkELf~LRfq~~~g~~l~np~~ir~~RKdIARIlTvl~ek~~~~~~~~y~~~~~~p 80 (112)
|+.|+++||+++|.+||.++|.+++.|||+||||+++||+++|||+|+.+|||||||+||++|++.++++++|+|++++|
T Consensus 2 ~~~mKa~ELR~~s~eEL~~~L~eLK~ELf~LRfq~atggqlen~~rIr~vRRdIARi~Tvl~er~~~~lr~~yk~kk~~P 81 (124)
T 4a17_U 2 DKSVRVFKLRTQTEEQLVGELGKLQTELSQLRIAKIAGGTANKLGRIGIVRKAIAKYLTIINEKRRQAVKDQFKGKSLKP 81 (124)
T ss_dssp CCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred CcccCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 56799999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHhhcCHHHHHH
Q 033748 81 LDLRPKKTRAIRRRLTKHQVLF 102 (112)
Q Consensus 81 ~~lrpk~t~~~r~~l~~~~~~~ 102 (112)
+|||||+|||+|++||+||+|.
T Consensus 82 ~dlr~kktra~rr~Lt~~e~~~ 103 (124)
T 4a17_U 82 LDIRVKKTRAIRRKLTKKQREA 103 (124)
T ss_dssp TTTSCCSCHHHHHSCCHHHHHC
T ss_pred cccCchHHHHHHHHcCHHHHhh
Confidence 9999999999999999999874
No 2
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=9.9e-42 Score=245.60 Aligned_cols=103 Identities=66% Similarity=0.899 Sum_probs=60.1
Q ss_pred CCCCChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 033748 1 MARIKVHELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLP 80 (112)
Q Consensus 1 M~~mK~~ELR~lS~eEL~~~L~elkkELf~LRfq~~~g~~l~np~~ir~~RKdIARIlTvl~ek~~~~~~~~y~~~~~~p 80 (112)
|+.|+++||+++|++||.++|.+++.|||+||||+++||+++|||+|+.+|||||||+||++|++.++++++|+|++++|
T Consensus 1 Ma~mK~~ELR~~s~eEL~~~L~eLK~ELf~LRfq~atgq~len~~rir~vRrdIARI~Tvl~er~~~~lr~~yk~kk~~p 80 (123)
T 2zkr_v 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKP 80 (123)
T ss_dssp ---CCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred CCCCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 89999999999999999999999999999999999999668999999999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHhhcCHHHHHHH
Q 033748 81 LDLRPKKTRAIRRRLTKHQVLFL 103 (112)
Q Consensus 81 ~~lrpk~t~~~r~~l~~~~~~~~ 103 (112)
+|||||+|||+|++||+||+|.-
T Consensus 81 ~dlr~k~tra~rr~Lt~~~~~~k 103 (123)
T 2zkr_v 81 LDLRPKKTRAMRRRLNKHEENLK 103 (123)
T ss_dssp -----------------------
T ss_pred cccchHHHHHHHHHcCHHHHhhc
Confidence 99999999999999999999864
No 3
>3u5e_h 60S ribosomal protein L35-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 1s1i_X 2wwa_N 2ww9_N 3izc_c 3izs_c 2wwb_N 3o5h_c 3o58_c 3u5i_h 4b6a_h
Probab=100.00 E-value=2.8e-40 Score=237.18 Aligned_cols=99 Identities=56% Similarity=0.705 Sum_probs=96.1
Q ss_pred CCCCChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 033748 1 MARIKVHELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLP 80 (112)
Q Consensus 1 M~~mK~~ELR~lS~eEL~~~L~elkkELf~LRfq~~~g~~l~np~~ir~~RKdIARIlTvl~ek~~~~~~~~y~~~~~~p 80 (112)
|+.|+++||+++|.+||.++|.+++.|||+||||+++| ++ ||+|+.+|||||||+||++|++.++++++|+|++++|
T Consensus 1 Ma~mK~~ELR~~s~eEL~~~L~eLK~ELf~LRfq~atg-ql--~~~Ir~vRR~IARi~Tvl~er~~~~lr~~yk~kk~~p 77 (120)
T 3u5e_h 1 MAGVKAYELRTKSKEQLASQLVDLKKELAELKVQKLSR-PS--LPKIKTVRKSIACVLTVINEQQREAVRQLYKGKKYQP 77 (120)
T ss_dssp -CCCCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTS-SC--CTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSCCC
T ss_pred CCcCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-Cc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 89999999999999999999999999999999999999 56 9999999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHhhcCHHHHHH
Q 033748 81 LDLRPKKTRAIRRRLTKHQVLF 102 (112)
Q Consensus 81 ~~lrpk~t~~~r~~l~~~~~~~ 102 (112)
+|||||+|||+|++||+||+|.
T Consensus 78 ~dlr~kktra~rr~Lt~~~~~~ 99 (120)
T 3u5e_h 78 KDLRAKKTRALRRALTKFEASQ 99 (120)
T ss_dssp TTTSCCSCHHHHSSCCSHHHHC
T ss_pred cccCchHHHHHHHHcCHHHHhh
Confidence 9999999999999999999874
No 4
>3iz5_c 60S ribosomal protein L35 (L29P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2j37_5 2go5_5 3izr_c
Probab=100.00 E-value=9.9e-41 Score=240.69 Aligned_cols=100 Identities=55% Similarity=0.725 Sum_probs=98.0
Q ss_pred CCChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 033748 3 RIKVHELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLD 82 (112)
Q Consensus 3 ~mK~~ELR~lS~eEL~~~L~elkkELf~LRfq~~~g~~l~np~~ir~~RKdIARIlTvl~ek~~~~~~~~y~~~~~~p~~ 82 (112)
.|+++||+++|++||.++|.+++.|||+||||+++| +++|||+|+.+|||||||+||++|++.++++++|+|++++|+|
T Consensus 5 ~mKa~ELR~~s~eEL~~~L~eLK~ELf~LRfq~atg-qlen~~rIr~vRRdIARi~Tvl~er~~~~lr~~yk~kk~~P~d 83 (124)
T 3iz5_c 5 KVKAGELWNKSKDDLTKQLAELKTELGQLRIQKVAS-SGSKLNRIHDIRKSIARVLTVINAKQRAQLRLFYKNKKYAPLD 83 (124)
T ss_dssp CCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCSSH
T ss_pred cCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCcc
Confidence 699999999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred CCchhhHHHHhhcCHHHHHHH
Q 033748 83 LRPKKTRAIRRRLTKHQVLFL 103 (112)
Q Consensus 83 lrpk~t~~~r~~l~~~~~~~~ 103 (112)
||||+|||+|++||+||+|.-
T Consensus 84 lr~kktra~rr~Lt~~e~~~k 104 (124)
T 3iz5_c 84 LRAKQTRAIRRRLSPDEKSRV 104 (124)
T ss_dssp HHHHHCSHHHHHTCSCCHHHH
T ss_pred cCchHHHHHHHHcCHHHHhhh
Confidence 999999999999999999864
No 5
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=99.93 E-value=2.6e-26 Score=151.18 Aligned_cols=68 Identities=29% Similarity=0.474 Sum_probs=63.2
Q ss_pred CCCCChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 033748 1 MARIKVHELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAA 68 (112)
Q Consensus 1 M~~mK~~ELR~lS~eEL~~~L~elkkELf~LRfq~~~g~~l~np~~ir~~RKdIARIlTvl~ek~~~~ 68 (112)
|+.||++|||++|.+||.++|.++++|||+||||+++||+++|||+|+.+||+||||+||++|++.++
T Consensus 1 Ma~mk~~elr~~s~~EL~~~l~elk~ELf~LR~q~atggql~n~~~ir~vRr~IARi~Tvl~er~~~~ 68 (71)
T 1vq8_V 1 MTVLHVQEIRDMTPAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTIQGEEGDLQ 68 (71)
T ss_dssp -CCSCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCCCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCccChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999996589999999999999999999999998654
No 6
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.92 E-value=1.9e-24 Score=142.73 Aligned_cols=70 Identities=24% Similarity=0.294 Sum_probs=66.0
Q ss_pred CChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033748 4 IKVHELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAY 73 (112)
Q Consensus 4 mK~~ELR~lS~eEL~~~L~elkkELf~LRfq~~~g~~l~np~~ir~~RKdIARIlTvl~ek~~~~~~~~y 73 (112)
||++||+++|.+||.++|.++++|||+||||+++|+.++|||+|+.+|||||||+||++|++.+..+.+.
T Consensus 1 MK~~elr~~s~~EL~~~L~elk~ELf~LR~q~atgq~l~n~~~ir~vRr~IARi~Tvl~er~~~~~~~~~ 70 (72)
T 3j21_W 1 MKPSEIREMSIEEIDAKIRELRLQLAKERGLLTMGTSLENPMVIRNLRRDIARLLTIKKEKLREREKGKV 70 (72)
T ss_dssp CCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7899999999999999999999999999999999933999999999999999999999999998877654
No 7
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=99.90 E-value=3.7e-24 Score=139.07 Aligned_cols=62 Identities=31% Similarity=0.412 Sum_probs=60.2
Q ss_pred CChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 033748 4 IKVHELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQK 66 (112)
Q Consensus 4 mK~~ELR~lS~eEL~~~L~elkkELf~LRfq~~~g~~l~np~~ir~~RKdIARIlTvl~ek~~ 66 (112)
||++||+++|.+||.+++.++++|||+||||+++| +++|||+|+.+|||||||+||++|++.
T Consensus 1 MK~~elr~~s~~EL~~~l~elk~ELf~LR~q~atg-ql~n~~~ir~vRr~IARi~Tvl~er~~ 62 (66)
T 1r73_A 1 MKASELRNYTDEELKNLLEEKKRQLMELRFQLAMG-QLKNTSLIKLTKRDIARIKTILREREL 62 (66)
T ss_dssp CCCSHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHcc-CccCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 78899999999999999999999999999999998 899999999999999999999999986
No 8
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=99.90 E-value=3.5e-24 Score=141.45 Aligned_cols=65 Identities=32% Similarity=0.436 Sum_probs=61.4
Q ss_pred CCChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 033748 3 RIKVHELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAA 68 (112)
Q Consensus 3 ~mK~~ELR~lS~eEL~~~L~elkkELf~LRfq~~~g~~l~np~~ir~~RKdIARIlTvl~ek~~~~ 68 (112)
.||++|||++|.+||.++|.++++|||+||||+++| +++|||+|+.+|||||||+||++|++.+.
T Consensus 7 ~mK~~elr~~s~eEL~~~L~elk~ELf~LR~q~atg-ql~n~~~ir~vRr~IARi~Tvl~er~~~~ 71 (72)
T 3v2d_2 7 RKQLEEARKLSPVELEKLVREKKRELMELRFQASIG-QLSQNHKIRDLKRQIARLLTVLNEKRRQN 71 (72)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTT-CCCCTTHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 478999999999999999999999999999999999 68999999999999999999999998643
No 9
>3jyw_X 60S ribosomal protein L35; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=99.90 E-value=2.8e-25 Score=151.42 Aligned_cols=73 Identities=51% Similarity=0.546 Sum_probs=69.7
Q ss_pred CCCChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 033748 2 ARIKVHELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKK 77 (112)
Q Consensus 2 ~~mK~~ELR~lS~eEL~~~L~elkkELf~LRfq~~~g~~l~np~~ir~~RKdIARIlTvl~ek~~~~~~~~y~~~~ 77 (112)
+.||++|||++|.+||.++|.++++|||+||||+++| ++ ||+|+.+|||||||+||++|++.++++++|+.+-
T Consensus 1 ~~MKa~ELR~~S~eEL~~~L~eLK~ELf~LRfq~atg-ql--p~rIr~vRRdIARikTvl~er~~~~lr~~y~~~~ 73 (86)
T 3jyw_X 1 AGVKAYELRTKSKEQLASQLVDLKKELAELKVQKLSR-PS--LPKIKTVRKSIACVLTVINEQQAAAAAAAAAAAA 73 (86)
T ss_dssp CCSCHHHHHTSCHHHHHHHHHHHTTTHHHHHHHHHTC-CC--HHHHTCCSTTTHHHHTTTTHHHHHHHSSCCCSSC
T ss_pred CCCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999999999999 57 9999999999999999999999999999998754
No 10
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=99.90 E-value=2.6e-24 Score=140.13 Aligned_cols=63 Identities=24% Similarity=0.351 Sum_probs=60.7
Q ss_pred CChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 033748 4 IKVHELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKA 67 (112)
Q Consensus 4 mK~~ELR~lS~eEL~~~L~elkkELf~LRfq~~~g~~l~np~~ir~~RKdIARIlTvl~ek~~~ 67 (112)
||++|||++|.+||.+++.++++|||+||||+++| +++|||+|+.+|||||||+||++|++.+
T Consensus 1 Mk~~elr~~s~~EL~~~l~elk~ELf~LR~q~atg-ql~n~~~ir~vRr~IARi~Tvl~er~~~ 63 (67)
T 2zjr_V 1 MKPSEMRNLQATDFAKEIDARKKELMELRFQAAAG-QLAQPHRVRQLRREVAQLNTVKAELARK 63 (67)
T ss_dssp CCSTTTTTSCHHHHHHHHHTHHHHHHHHHHHHHHS-CCCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78899999999999999999999999999999998 8999999999999999999999999765
No 11
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=99.89 E-value=2.5e-24 Score=138.79 Aligned_cols=61 Identities=33% Similarity=0.406 Sum_probs=59.3
Q ss_pred CChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 033748 4 IKVHELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQ 65 (112)
Q Consensus 4 mK~~ELR~lS~eEL~~~L~elkkELf~LRfq~~~g~~l~np~~ir~~RKdIARIlTvl~ek~ 65 (112)
||++||+++|.+||.+++.++++|||+||||+++| +++|||+|+.+|||||||+||++|++
T Consensus 1 MK~~elr~~s~~EL~~~l~elk~Elf~LR~q~atg-ql~n~~~ir~vRr~IARi~Tvl~er~ 61 (63)
T 3r8s_Y 1 MKAKELREKSVEELNTELLNLLREQFNLRMQAASG-QLQQSHLLKQVRRDVARVKTLLNEKA 61 (63)
T ss_dssp CCGGGTTSCHHHHHHHHHHHHTHHHHHHHHHHHTT-CCSCGGGTHHHHHHHHHHHHTTTSST
T ss_pred CCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCcCcHHHHHHHHHHHHHHHHHHHhh
Confidence 78999999999999999999999999999999999 79999999999999999999999875
No 12
>3bbo_Z Ribosomal protein L29; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.86 E-value=2.1e-22 Score=151.60 Aligned_cols=77 Identities=25% Similarity=0.367 Sum_probs=61.5
Q ss_pred CCC--CChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 033748 1 MAR--IKVHELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKF 78 (112)
Q Consensus 1 M~~--mK~~ELR~lS~eEL~~~L~elkkELf~LRfq~~~g~~l~np~~ir~~RKdIARIlTvl~ek~~~~~~~~y~~~~~ 78 (112)
|+. ++++|||+||.+||.++|.++++|||+||||+++| +++|||+|+.+|||||||+||++|++.++....+.-.++
T Consensus 60 MAK~~~Ka~ELR~lS~eEL~ekL~eLKkELFnLRfQkATG-QLeNpsrIR~VRRdIARIkTVLrErel~~~~~kr~SRk~ 138 (173)
T 3bbo_Z 60 MSKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSAR-NEFKSSDFRRMKKQVARMLTVKREREIKEGIKKRLSRKL 138 (173)
T ss_dssp --CCSSCHHHHHHSCHHHHHHHHHHHTTHHHHHHHHHHHC-CCSCHHHHHHHHHHHHHHHHHHHHSCC------------
T ss_pred cccccCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 565 79999999999999999999999999999999999 699999999999999999999999998877665555444
No 13
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=71.88 E-value=4.9 Score=21.15 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 033748 14 KVDLLNQLKELKAELALLRVAKVT 37 (112)
Q Consensus 14 ~eEL~~~L~elkkELf~LRfq~~~ 37 (112)
.+||.+++++++..|..||-+..+
T Consensus 3 adelykeledlqerlrklrkklrs 26 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLRKKLRS 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 578888888888888888766543
No 14
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=69.19 E-value=25 Score=24.13 Aligned_cols=69 Identities=16% Similarity=0.237 Sum_probs=47.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHH-----HHHHHHcCCCCcchhHHHHHHHHHHHHHHHHH-HHHHHHHHHhhCCCC
Q 033748 7 HELRQKSKVDLLNQLKELKAELALL-----RVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQ-KQKAALREAYKNKKF 78 (112)
Q Consensus 7 ~ELR~lS~eEL~~~L~elkkELf~L-----Rfq~~~g~~l~np~~ir~~RKdIARIlTvl~e-k~~~~~~~~y~~~~~ 78 (112)
.-|.+||..||..+-.++.+.+-++ |++.... .-.++|+.+--.|-|+.+.=.. +...+.+.+-.+.++
T Consensus 25 ErL~~mSKqELIqEYl~LE~~~s~le~e~~rlr~~~~---~~~~~v~eLe~everL~~ENq~L~~e~~~~~~~~~~~~ 99 (104)
T 3s9g_A 25 ESLQNMSKQELIKEYLELEKSLSRMEDENNRLRLESK---RLDARVRELELELDRLRAENLQLLTENELHRQQERAPL 99 (104)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cchhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCch
Confidence 4588999999999999999999888 6666544 2258999999999888765433 233445655444433
No 15
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=48.67 E-value=13 Score=25.81 Aligned_cols=43 Identities=19% Similarity=0.246 Sum_probs=28.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CcchhHHHHHHH
Q 033748 11 QKSKVDLLNQLKELKAELALLRVAKVTGGAP-NKLSKIKVVRLS 53 (112)
Q Consensus 11 ~lS~eEL~~~L~elkkELf~LRfq~~~g~~l-~np~~ir~~RKd 53 (112)
++|.|||.++|..|+-|=-.|+=+-..||+. ++|..+...-|+
T Consensus 7 ~~t~EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKe 50 (110)
T 2oa5_A 7 DKTYEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRE 50 (110)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHH
Confidence 7899999999999999999988776654344 455556655555
No 16
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=40.38 E-value=99 Score=22.11 Aligned_cols=50 Identities=12% Similarity=0.200 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHH
Q 033748 15 VDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQK 64 (112)
Q Consensus 15 eEL~~~L~elkkELf~LRfq~~~g~~l~np~~ir~~RKdIARIlTvl~ek 64 (112)
+.|..++++|+.-.=.||-.-+..|.-+.|..+..+.++|+...+-|..-
T Consensus 24 d~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m 73 (141)
T 3okq_A 24 DTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKL 73 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777889999999999999998887653
No 17
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=38.22 E-value=30 Score=19.74 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=20.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHH
Q 033748 11 QKSKVDLLNQLKELKAELALLRVAK 35 (112)
Q Consensus 11 ~lS~eEL~~~L~elkkELf~LRfq~ 35 (112)
.||.+|..+++..++.+|-.|+-.+
T Consensus 7 ~mTLeEtkeQi~~l~~kl~~LkeEK 31 (38)
T 2l5g_A 7 RMSLEETKEQILKLEEKLLALQEEK 31 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999998888887543
No 18
>2c0s_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=36.17 E-value=75 Score=19.52 Aligned_cols=34 Identities=21% Similarity=0.168 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHHH
Q 033748 12 KSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKV 49 (112)
Q Consensus 12 lS~eEL~~~L~elkkELf~LRfq~~~g~~l~np~~ir~ 49 (112)
|+.++|..+|++.|++|.++-.. .| +..|..|+.
T Consensus 1 M~~~~L~~~IE~kR~eL~~l~~k--~G--l~~~~vI~~ 34 (64)
T 2c0s_A 1 MNVTKLNDRIEAKKKELIYLVEK--YG--FTHHKVISF 34 (64)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH--TC--TTSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH--cC--CCCHHHHHH
Confidence 56789999999999999999843 35 666665543
No 19
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=34.32 E-value=19 Score=19.86 Aligned_cols=11 Identities=55% Similarity=1.192 Sum_probs=8.1
Q ss_pred HHHHHHHHhhC
Q 033748 102 FLLLLFFLIFF 112 (112)
Q Consensus 102 ~~~~~~~~~~~ 112 (112)
-|.++||.|||
T Consensus 13 tlgiiFFAI~F 23 (32)
T 3arc_T 13 IIALFFFAIFF 23 (32)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHhhhh
Confidence 35677888887
No 20
>3bbz_A P protein, phosphoprotein; molten globule, viral protein, replication; 2.10A {Mumps virus}
Probab=30.51 E-value=47 Score=19.84 Aligned_cols=26 Identities=4% Similarity=0.031 Sum_probs=20.7
Q ss_pred HHHHHHHHcCCCCcchhHHHHHHHHHH
Q 033748 30 LLRVAKVTGGAPNKLSKIKVVRLSIAQ 56 (112)
Q Consensus 30 ~LRfq~~~g~~l~np~~ir~~RKdIAR 56 (112)
+-+|....+ ...+-.++..+||+|=|
T Consensus 21 r~~Fe~ki~-~~~tE~q~k~iKr~IIR 46 (49)
T 3bbz_A 21 KQAFEQRLA-KASTEDALNDIKRDIIR 46 (49)
T ss_dssp HHHHHHHHH-TCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hcCcHHHHHHHHHHHHH
Confidence 456677777 57788999999999976
No 21
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=29.55 E-value=56 Score=18.44 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=18.2
Q ss_pred hHHHhcCCHHHHHHHHHHHHHH
Q 033748 6 VHELRQKSKVDLLNQLKELKAE 27 (112)
Q Consensus 6 ~~ELR~lS~eEL~~~L~elkkE 27 (112)
+++|.+||.-|+.+....++.+
T Consensus 7 ie~i~~lTvlE~~eLvk~leek 28 (40)
T 1dd4_C 7 IEAIEKLTVSELAELVKKLEDK 28 (40)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHH
Confidence 3578999999999988888765
No 22
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=29.40 E-value=1.2e+02 Score=19.83 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH--HHHcCCCCcchhHHHHHHHHHHHHH
Q 033748 12 KSKVDLLNQLKELKAELALLRVA--KVTGGAPNKLSKIKVVRLSIAQVLT 59 (112)
Q Consensus 12 lS~eEL~~~L~elkkELf~LRfq--~~~g~~l~np~~ir~~RKdIARIlT 59 (112)
|+.+.|..++.+|+.+..++.-+ .... ++.+|.--..+.+-|..+.+
T Consensus 1 ~~~~~L~~~i~~L~~q~~~L~~ei~~~~a-~L~~~~~~~~~~~hI~~Lh~ 49 (85)
T 3viq_B 1 MEKSQLESRVHLLEQQKEQLESSLQDALA-KLKNRDAKQTVQKHIDLLHT 49 (85)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCSSSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCCHHHHHHHHHHHHHH
Confidence 35566666666666666555433 2334 45666555566777765443
No 23
>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} SCOP: h.1.31.1
Probab=26.97 E-value=55 Score=20.46 Aligned_cols=20 Identities=15% Similarity=0.355 Sum_probs=15.9
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 033748 7 HELRQKSKVDLLNQLKELKA 26 (112)
Q Consensus 7 ~ELR~lS~eEL~~~L~elkk 26 (112)
.++..+|.+||.+.+.+.+.
T Consensus 18 ae~~~~s~deL~~~l~eqee 37 (64)
T 2hv8_D 18 AEISSVSRDELMEAIQKQEE 37 (64)
T ss_dssp TTCCSSCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 46778999999988876555
No 24
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=24.17 E-value=82 Score=18.88 Aligned_cols=20 Identities=25% Similarity=0.233 Sum_probs=14.9
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 033748 7 HELRQKSKVDLLNQLKELKA 26 (112)
Q Consensus 7 ~ELR~lS~eEL~~~L~elkk 26 (112)
+=|+.+|.+||...+..+..
T Consensus 5 ~fLk~ls~eEL~~rl~~Ld~ 24 (51)
T 2jo8_A 5 EFLKSWTVEDLQKRLLALDP 24 (51)
T ss_dssp GGGGGSCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHccH
Confidence 34678899999988865543
No 25
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=23.01 E-value=90 Score=16.49 Aligned_cols=21 Identities=14% Similarity=0.302 Sum_probs=16.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHH
Q 033748 7 HELRQKSKVDLLNQLKELKAE 27 (112)
Q Consensus 7 ~ELR~lS~eEL~~~L~elkkE 27 (112)
+.|.+||.-|+.+.+..++.+
T Consensus 8 e~i~~lTvlEl~eLvk~lEe~ 28 (30)
T 1zav_U 8 EAIEKLTVSELAELVKKLEDK 28 (30)
T ss_dssp HHHHHSBHHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHH
Confidence 568889999988888777654
No 26
>2yxy_A Hypothetical conserved protein, GK0453; alpha and beta proteins (A+B) class, structural GENO unknown function, NPPSFA; 2.20A {Geobacillus kaustophilus}
Probab=21.30 E-value=76 Score=22.05 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=18.4
Q ss_pred HhcCCHHHHHHHHHHHHHHHHH
Q 033748 9 LRQKSKVDLLNQLKELKAELAL 30 (112)
Q Consensus 9 LR~lS~eEL~~~L~elkkELf~ 30 (112)
..+||..||..++..++.+--+
T Consensus 11 ySeMS~~EL~~EI~~L~ekarK 32 (115)
T 2yxy_A 11 YSEMTKEELQQEIAMLTEKARK 32 (115)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHHHHHHHHHHH
Confidence 6799999999999999876543
No 27
>1sf9_A YFHH hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative, midwest center for structural genomics; 1.71A {Bacillus subtilis} SCOP: b.34.15.1
Probab=21.27 E-value=84 Score=22.21 Aligned_cols=42 Identities=12% Similarity=0.157 Sum_probs=28.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHH
Q 033748 7 HELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIA 55 (112)
Q Consensus 7 ~ELR~lS~eEL~~~L~elkkELf~LRfq~~~g~~l~np~~ir~~RKdIA 55 (112)
+-..+||..||..++..++.+--+.. +..+..++-...+.|+
T Consensus 27 krySeMS~~EL~~EI~~L~EKaRKAE-------q~Gi~NE~aV~erKi~ 68 (128)
T 1sf9_A 27 KRYSQMTPHELNTEIALLSEKARKAE-------QHGIINELAVLERKIT 68 (128)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHHHH-------HTTCHHHHHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHH-------HcCCccHHHHHHHHHH
Confidence 34679999999999999887643322 2445556655555543
No 28
>1jei_A Emerin; membrane protein; NMR {Synthetic} SCOP: a.140.1.1 PDB: 2odc_I 2odg_C
Probab=20.72 E-value=30 Score=20.94 Aligned_cols=16 Identities=19% Similarity=0.277 Sum_probs=12.3
Q ss_pred HHhcCCHHHHHHHHHH
Q 033748 8 ELRQKSKVDLLNQLKE 23 (112)
Q Consensus 8 ELR~lS~eEL~~~L~e 23 (112)
|+..+|++||.++|..
T Consensus 2 dv~~Lsd~eLr~~L~~ 17 (53)
T 1jei_A 2 NYADLSDTELTTLLRR 17 (53)
T ss_dssp CTTTCCHHHHHHHHSS
T ss_pred cHHHcCHHHHHHHHHH
Confidence 5678899998877653
Done!