Query 033749
Match_columns 112
No_of_seqs 120 out of 603
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 09:27:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033749.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033749hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vkp_A BTB/POZ domain-containi 80.8 5.8 0.0002 25.0 6.1 61 35-99 11-74 (109)
2 1und_A Advillin, P92; actin bi 53.3 3.5 0.00012 23.7 0.4 19 53-71 1-19 (37)
3 1vd2_A Protein kinase C, IOTA 48.6 56 0.0019 21.6 5.9 39 33-75 5-43 (89)
4 1y74_B MLIN-2/CASK, peripheral 46.2 9.1 0.00031 22.4 1.5 20 53-72 26-49 (50)
5 2vpk_A Myoneurin; transcriptio 46.1 48 0.0016 21.0 5.2 54 35-99 25-83 (116)
6 3n5b_B ASR0485 protein; PII, P 45.4 3 0.0001 29.6 -0.9 11 54-64 29-39 (112)
7 2al3_A TUG long isoform; TUG U 40.1 29 0.001 23.3 3.5 31 43-75 17-47 (90)
8 1r29_A B-cell lymphoma 6 prote 39.0 53 0.0018 21.1 4.6 57 35-99 32-92 (127)
9 2lmc_A Bacterial RNA polymeras 38.9 22 0.00074 24.0 2.6 45 28-72 13-68 (84)
10 3drz_A BTB/POZ domain-containi 38.5 81 0.0028 20.6 5.8 63 32-99 5-72 (107)
11 3ga1_A Nucleus accumbens-assoc 37.8 78 0.0027 20.5 5.3 53 35-98 36-92 (129)
12 2c2n_A Malonyl COA-acyl carrie 34.2 35 0.0012 26.5 3.6 41 32-74 25-65 (339)
13 1s1g_A Potassium voltage-gated 31.4 38 0.0013 23.2 3.0 63 31-99 11-75 (124)
14 1yu8_X Villin; alpha helix, 3- 30.8 13 0.00045 23.8 0.5 19 53-71 31-49 (67)
15 2if5_A Zinc finger and BTB dom 27.9 1.2E+02 0.004 19.1 5.7 58 35-99 28-88 (120)
16 1w8x_N Protein P31, protein C, 27.9 13 0.00043 26.6 -0.0 29 30-61 85-123 (126)
17 1qzp_A Dematin; villin headpie 27.4 12 0.0004 24.0 -0.2 19 53-71 32-50 (68)
18 2xko_C PIPX, global nitrogen r 27.1 8.1 0.00028 26.4 -1.1 12 53-64 5-16 (89)
19 1ujs_A Actin-binding LIM prote 25.3 19 0.00063 24.3 0.5 20 53-72 46-65 (88)
20 2k6m_S Supervillin; SVHP, HP, 25.0 15 0.00051 23.5 -0.0 20 53-72 31-50 (67)
21 3pmi_A PWWP domain-containing 23.6 28 0.00095 25.3 1.2 30 43-72 46-78 (134)
22 1j26_A Immature colon carcinom 22.1 49 0.0017 22.8 2.2 39 45-85 45-84 (112)
23 3ohu_A Transcription regulator 21.0 1E+02 0.0034 19.7 3.4 55 35-98 35-93 (125)
24 2ka5_A Putative anti-sigma fac 20.9 45 0.0015 21.8 1.7 22 18-39 6-27 (125)
25 2nz0_B Potassium voltage-gated 20.4 69 0.0024 22.5 2.7 63 31-99 33-97 (140)
26 3htm_A Speckle-type POZ protei 20.2 1.6E+02 0.0056 19.3 4.5 58 35-99 37-97 (172)
No 1
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=80.76 E-value=5.8 Score=25.01 Aligned_cols=61 Identities=15% Similarity=0.221 Sum_probs=43.4
Q ss_pred EEEEEccCCcceEEEEecccc--CcHHHHHHHHHHHHhcCCCCCCceEEc-CcHHHHHHHHHHHhccC
Q 033749 35 LAIKVGQGEEQQRVVVPVIYF--NHPLFMQLLKEAEEEYGFDQKGTITIP-CHVEEFRYVQGMIDREN 99 (112)
Q Consensus 35 ~aVYVG~g~e~~RFvVPv~yL--nhP~F~~LL~~AeEEfG~~~~G~L~IP-C~~~~Fe~vl~~l~~~~ 99 (112)
+.+.||++.+.++|-+.-..| ..|.|++++...-.|- . ..|.|| .+.+.|+.++.......
T Consensus 11 v~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~---~-~~i~l~~~~~~~f~~~l~~iYt~~ 74 (109)
T 2vkp_A 11 VHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEV---K-SEIHIPDVEPAAFLILLKYMYSDE 74 (109)
T ss_dssp EEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC---------C-CEEEETTSCHHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccC---C-CeEEeCCCCHHHHHHHHHHHcCCC
Confidence 456677545668999988888 6899999997644332 2 688897 69999999888776654
No 2
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=53.34 E-value=3.5 Score=23.72 Aligned_cols=19 Identities=11% Similarity=0.378 Sum_probs=16.9
Q ss_pred cccCcHHHHHHHHHHHHhc
Q 033749 53 IYFNHPLFMQLLKEAEEEY 71 (112)
Q Consensus 53 ~yLnhP~F~~LL~~AeEEf 71 (112)
.||+.-.|++++.++.+||
T Consensus 1 ~yLsd~dF~~vFgmsr~eF 19 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQF 19 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHH
T ss_pred CCCCHHHHHHHHCcCHHHH
Confidence 4899999999999999997
No 3
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=48.59 E-value=56 Score=21.63 Aligned_cols=39 Identities=15% Similarity=0.095 Sum_probs=28.2
Q ss_pred ceEEEEEccCCcceEEEEeccccCcHHHHHHHHHHHHhcCCCC
Q 033749 33 GCLAIKVGQGEEQQRVVVPVIYFNHPLFMQLLKEAEEEYGFDQ 75 (112)
Q Consensus 33 G~~aVYVG~g~e~~RFvVPv~yLnhP~F~~LL~~AeEEfG~~~ 75 (112)
+.+.|-+--+.+..|+.||. ...|++|.++-.+-|++..
T Consensus 5 ~~vkvK~~~~gdi~~~~v~~----~i~~~~L~~kv~~~~~~~~ 43 (89)
T 1vd2_A 5 SQVRVKAYYRGDIMITHFEP----SISFEGLCNEVRDMCSFDN 43 (89)
T ss_dssp SCEEEEEESSSCEEEEEECT----TCCHHHHHHHHHHHTTCCS
T ss_pred CeEEEEEEeCCeEEEEECCC----CCCHHHHHHHHHHHhCCCC
Confidence 34555443234678999988 4689999999999998753
No 4
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=46.21 E-value=9.1 Score=22.38 Aligned_cols=20 Identities=40% Similarity=0.658 Sum_probs=15.3
Q ss_pred cccCcHHHHHHHHH----HHHhcC
Q 033749 53 IYFNHPLFMQLLKE----AEEEYG 72 (112)
Q Consensus 53 ~yLnhP~F~~LL~~----AeEEfG 72 (112)
..|+.|-||+||+- |.++||
T Consensus 26 ~lL~~PHfqaLl~ahD~Va~~~y~ 49 (50)
T 1y74_B 26 RILTQPHFMALLQTHDVVAHEVYS 49 (50)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhc
Confidence 46899999999974 556664
No 5
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=46.12 E-value=48 Score=21.00 Aligned_cols=54 Identities=9% Similarity=0.169 Sum_probs=40.5
Q ss_pred EEEEEccCCcceEEEEecccc--CcHHHHHHHHHHHHhcCCCCCCceEEc---CcHHHHHHHHHHHhccC
Q 033749 35 LAIKVGQGEEQQRVVVPVIYF--NHPLFMQLLKEAEEEYGFDQKGTITIP---CHVEEFRYVQGMIDREN 99 (112)
Q Consensus 35 ~aVYVG~g~e~~RFvVPv~yL--nhP~F~~LL~~AeEEfG~~~~G~L~IP---C~~~~Fe~vl~~l~~~~ 99 (112)
+.+.|| .++|-+.-..| ..|.|++++... .+..|.|+ .+...|+.++.......
T Consensus 25 v~l~v~----~~~~~aHk~vLaa~S~yF~~~f~~~-------~~~~i~l~~~~~~~~~f~~ll~~~Yt~~ 83 (116)
T 2vpk_A 25 CTIVIG----EFQFKAHRNVLASFSEYFGAIYRST-------SENNVFLDQSQVKADGFQKLLEFIYTGT 83 (116)
T ss_dssp EEEEET----TEEEEECHHHHHHHCHHHHHHHTTC-------CCSCEECCTTTCCHHHHHHHHHHHHHSC
T ss_pred EEEEEC----CEEEeccHHHHhhcCHHHHHHHcCC-------CCCeEEeecCCCCHHHHHHHHHHHcCCC
Confidence 345665 36787777777 689999998764 35678888 79999999888776654
No 6
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=45.42 E-value=3 Score=29.63 Aligned_cols=11 Identities=45% Similarity=0.830 Sum_probs=9.0
Q ss_pred ccCcHHHHHHH
Q 033749 54 YFNHPLFMQLL 64 (112)
Q Consensus 54 yLnhP~F~~LL 64 (112)
|||||.|.-|-
T Consensus 29 YLNHPTFGLLy 39 (112)
T 3n5b_B 29 YINHPTWGLLY 39 (112)
T ss_dssp EEEETTTEEEE
T ss_pred hccCCccchhe
Confidence 99999996554
No 7
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=40.08 E-value=29 Score=23.33 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=25.5
Q ss_pred CcceEEEEeccccCcHHHHHHHHHHHHhcCCCC
Q 033749 43 EEQQRVVVPVIYFNHPLFMQLLKEAEEEYGFDQ 75 (112)
Q Consensus 43 ~e~~RFvVPv~yLnhP~F~~LL~~AeEEfG~~~ 75 (112)
...+|+.|++. ..-.+.++|++|-+.||++.
T Consensus 17 ~n~rr~~VKvt--p~t~L~~VL~eaC~K~gl~~ 47 (90)
T 2al3_A 17 PNGRRHTVKVT--PSTVLLQVLEDTCRRQDFNP 47 (90)
T ss_dssp TTSCEEEECCC--TTSBHHHHHHHHHHHTTCCG
T ss_pred CCCcEEEEEEC--CCCCHHHHHHHHHHHhCCCh
Confidence 56799999983 44578899999999999975
No 8
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=38.95 E-value=53 Score=21.14 Aligned_cols=57 Identities=14% Similarity=0.268 Sum_probs=42.2
Q ss_pred EEEEEccCCcceEEEEecccc--CcHHHHHHHHHHHHhcCCCCCCceEE-c-CcHHHHHHHHHHHhccC
Q 033749 35 LAIKVGQGEEQQRVVVPVIYF--NHPLFMQLLKEAEEEYGFDQKGTITI-P-CHVEEFRYVQGMIDREN 99 (112)
Q Consensus 35 ~aVYVG~g~e~~RFvVPv~yL--nhP~F~~LL~~AeEEfG~~~~G~L~I-P-C~~~~Fe~vl~~l~~~~ 99 (112)
+.+.|| .++|-+.-..| ..|.|++++...-.| ....|.| + .+.+.|+.++.......
T Consensus 32 v~l~v~----~~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~~~i~l~~~~~~~~f~~ll~~~Ytg~ 92 (127)
T 1r29_A 32 VVIVVS----REQFRAHKTVLMACSGLFYSIFTDQLKR----NLSVINLDPEINPEGFNILLDFMYTSR 92 (127)
T ss_dssp EEEEET----TEEEEECHHHHHHHCHHHHHHHTSTTTT----TCSEEECCTTSCHHHHHHHHHHHHHSC
T ss_pred EEEEEC----CEEEehHHHHHHHhCHHHHHHhcCCccC----CCCEEEeCCCCCHHHHHHHHHHHcCCC
Confidence 445665 26787777777 789999999865444 4578999 4 78999999888766554
No 9
>2lmc_A Bacterial RNA polymerase inhibitor; transferase, transcription; NMR {Enterobacteria phage T7} PDB: 2wnm_A
Probab=38.92 E-value=22 Score=23.97 Aligned_cols=45 Identities=27% Similarity=0.332 Sum_probs=16.7
Q ss_pred CCCCCceEEEEEccC---CcceEEEEeccccCc----H----HHHHHHHHHHHhcC
Q 033749 28 RDVPKGCLAIKVGQG---EEQQRVVVPVIYFNH----P----LFMQLLKEAEEEYG 72 (112)
Q Consensus 28 ~~vpkG~~aVYVG~g---~e~~RFvVPv~yLnh----P----~F~~LL~~AeEEfG 72 (112)
..||+|..--.+-.| ...++|++-+.--.+ | .+-+-|+.||+||+
T Consensus 13 ~~~~~~~~ms~~n~g~l~~~~KKf~vtveg~~~s~EVPV~A~sLdEAlE~AE~eYe 68 (84)
T 2lmc_A 13 GLVPRGSHMSNVNTGSLSVDNKKFWATVESSEHSFEVPIYAETLDEALELAEWQYV 68 (84)
T ss_dssp -------------CCSCCCCSSEEEEEEECSSCEEEEEECCSSHHHHHHHHHHTTG
T ss_pred CccccccccceeccccccccceEEEEEEecccceEEEeeecccHHHHHHHHHHHhh
Confidence 456666543333211 245666655522111 2 34566777888875
No 10
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=38.47 E-value=81 Score=20.55 Aligned_cols=63 Identities=14% Similarity=0.208 Sum_probs=44.7
Q ss_pred CceEEEEEccCCcceEEEEeccccC-cH--HHHHHHHHHHHhcC--CCCCCceEEcCcHHHHHHHHHHHhccC
Q 033749 32 KGCLAIKVGQGEEQQRVVVPVIYFN-HP--LFMQLLKEAEEEYG--FDQKGTITIPCHVEEFRYVQGMIDREN 99 (112)
Q Consensus 32 kG~~aVYVG~g~e~~RFvVPv~yLn-hP--~F~~LL~~AeEEfG--~~~~G~L~IPC~~~~Fe~vl~~l~~~~ 99 (112)
...+.+.|| .+||.+..+-|. .| .|..|.... .++. .+.+|.+-|-.+...|++||.......
T Consensus 5 ~~~v~LNVG----G~~f~t~~~TL~~~p~s~L~~~~~~~-~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g~ 72 (107)
T 3drz_A 5 SKWVRLNVG----GTYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGK 72 (107)
T ss_dssp CCEEEEEET----TEEEEEEHHHHTSSTTSHHHHHHTTC-GGGGGGBCTTSCEEECSCHHHHHHHHHHHHHSC
T ss_pred CCEEEEEEC----CEEEEECHHHHhcCCCcchhHHHhcC-CCCCcCCCCCceEEecCChHHHHHHHHHhCCCe
Confidence 356788998 389999988775 34 455654321 1232 345799999999999999998776654
No 11
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=37.76 E-value=78 Score=20.46 Aligned_cols=53 Identities=9% Similarity=0.246 Sum_probs=39.8
Q ss_pred EEEEEccCCcceEEEEeccccC--cHHHHHHHHHHHHhcCCCCCCceEEc--CcHHHHHHHHHHHhcc
Q 033749 35 LAIKVGQGEEQQRVVVPVIYFN--HPLFMQLLKEAEEEYGFDQKGTITIP--CHVEEFRYVQGMIDRE 98 (112)
Q Consensus 35 ~aVYVG~g~e~~RFvVPv~yLn--hP~F~~LL~~AeEEfG~~~~G~L~IP--C~~~~Fe~vl~~l~~~ 98 (112)
+.+.|| .++|-+.-..|. .|.|++++... ....|.|| .+.+.|+.++......
T Consensus 36 v~l~v~----~~~~~~Hk~vLaa~S~~F~~~f~~~-------~~~~i~l~~~~~~~~f~~ll~~iYtg 92 (129)
T 3ga1_A 36 VSVVVK----GHAFKAHRAVLAASSSYFRDLFNNS-------RSAVVELPAAVQPQSFQQILSFCYTG 92 (129)
T ss_dssp EEEEET----TEEEEECHHHHHHHBHHHHHHHHHC-------CCSEEECCTTCCHHHHHHHHHHHHHS
T ss_pred eEEEEC----CEEEEehHHHHHHcCHHHHHHHcCC-------CCCEEEECCCCCHHHHHHHHHHHhCC
Confidence 456665 367777766664 79999999875 45789996 8999999998876554
No 12
>2c2n_A Malonyl COA-acyl carrier protein transacylase; fatty acid synthase, lipid synthesis, mitochondrion transfer transferase; HET: AE4; 1.55A {Homo sapiens}
Probab=34.24 E-value=35 Score=26.53 Aligned_cols=41 Identities=24% Similarity=0.308 Sum_probs=25.4
Q ss_pred CceEEEEEccCCcceEEEEeccccCcHHHHHHHHHHHHhcCCC
Q 033749 32 KGCLAIKVGQGEEQQRVVVPVIYFNHPLFMQLLKEAEEEYGFD 74 (112)
Q Consensus 32 kG~~aVYVG~g~e~~RFvVPv~yLnhP~F~~LL~~AeEEfG~~ 74 (112)
+...-|+-|+|.. ..-.-.+.++.|.|++.++++++..|++
T Consensus 25 ~~~afvF~GQGsQ--~~gMg~~L~~~p~fr~~~~~~~~~lg~~ 65 (339)
T 2c2n_A 25 QCSVLLFPGQGSQ--VVGMGRGLLNYPRVRELYAAARRVLGYD 65 (339)
T ss_dssp CCEEEEECCTTCC--CTTTTTTTTTSTTHHHHHHHHHHHHSSC
T ss_pred CCEEEEECCCCcc--HHHHHHHHHhChHHHHHHHHHHHHhCCC
Confidence 3455666675521 1111113345799999999999988864
No 13
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=31.42 E-value=38 Score=23.24 Aligned_cols=63 Identities=19% Similarity=0.222 Sum_probs=44.7
Q ss_pred CCceEEEEEccCCcceEEEEeccccC-cHHHHHHHHHHHHhcCC-CCCCceEEcCcHHHHHHHHHHHhccC
Q 033749 31 PKGCLAIKVGQGEEQQRVVVPVIYFN-HPLFMQLLKEAEEEYGF-DQKGTITIPCHVEEFRYVQGMIDREN 99 (112)
Q Consensus 31 pkG~~aVYVG~g~e~~RFvVPv~yLn-hP~F~~LL~~AeEEfG~-~~~G~L~IPC~~~~Fe~vl~~l~~~~ 99 (112)
....+.+.|| .+||.+..+-|. .|. .+|..++...-+ +.+|.+-|-.+...|+.||.......
T Consensus 11 ~~~~V~LNVG----G~~F~t~~~TL~~~p~--S~L~~~~~~~~~~~~~g~~FiDRdp~~F~~ILnflR~G~ 75 (124)
T 1s1g_A 11 QDELIVLNVS----GRRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGK 75 (124)
T ss_dssp -CCEEEEEET----TEEEEEEHHHHTTSTT--SSTTSSGGGGTBCSSSCSEEECSCHHHHHHHHHHHHHSC
T ss_pred CCCEEEEEeC----CEEEEEeHHHHhcCCC--ceecccCCcccccCCCCcEEEcCChHHHHHHHHHHhcCC
Confidence 4578899998 389999987764 332 234444443333 34799999999999999998887654
No 14
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=30.76 E-value=13 Score=23.82 Aligned_cols=19 Identities=5% Similarity=0.111 Sum_probs=17.9
Q ss_pred cccCcHHHHHHHHHHHHhc
Q 033749 53 IYFNHPLFMQLLKEAEEEY 71 (112)
Q Consensus 53 ~yLnhP~F~~LL~~AeEEf 71 (112)
.||+.-.|++++.++.+||
T Consensus 31 ~yLsdedF~~vFgms~~eF 49 (67)
T 1yu8_X 31 NHLSDEDFKAVFGMTRSAF 49 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHH
T ss_pred hcCCHHHHHHHHCcCHHHH
Confidence 6999999999999999998
No 15
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=27.91 E-value=1.2e+02 Score=19.14 Aligned_cols=58 Identities=14% Similarity=0.138 Sum_probs=39.9
Q ss_pred EEEEEccCCcceEEEEecccc--CcHHHHHHHHHHHHhcCCCCCCceEEc-CcHHHHHHHHHHHhccC
Q 033749 35 LAIKVGQGEEQQRVVVPVIYF--NHPLFMQLLKEAEEEYGFDQKGTITIP-CHVEEFRYVQGMIDREN 99 (112)
Q Consensus 35 ~aVYVG~g~e~~RFvVPv~yL--nhP~F~~LL~~AeEEfG~~~~G~L~IP-C~~~~Fe~vl~~l~~~~ 99 (112)
+.+.|| .++|-+.-..| ..|.|++++...-.| .....|.|+ .+.+.|+.++.......
T Consensus 28 v~l~v~----~~~~~aHk~vLaa~S~~F~~~f~~~~~e---~~~~~i~l~~~~~~~f~~ll~~~Yt~~ 88 (120)
T 2if5_A 28 VVILVE----GREFPTHRSVLAACSQYFKKLFTSGAVV---DQQNVYEIDFVSAEALTALMDFAYTAT 88 (120)
T ss_dssp EEEEET----TEEEEECHHHHHHHCHHHHHHHHC--------CCSEEECCSSCHHHHHHHHHHHHHSC
T ss_pred eEEEEC----CEEEeHHHHHHHHhCHHHHHHhcCCccc---cCCceEEeCCCCHHHHHHHHHHHcCCC
Confidence 445565 36787777777 489999999754333 235678898 68999999888766554
No 16
>1w8x_N Protein P31, protein C, GPC; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=27.85 E-value=13 Score=26.59 Aligned_cols=29 Identities=21% Similarity=0.466 Sum_probs=18.1
Q ss_pred CCCceEEEEEccCCcceEEE----------EeccccCcHHHH
Q 033749 30 VPKGCLAIKVGQGEEQQRVV----------VPVIYFNHPLFM 61 (112)
Q Consensus 30 vpkG~~aVYVG~g~e~~RFv----------VPv~yLnhP~F~ 61 (112)
=.+||+|+.| ..+.+|+ +|+-|||.|+-|
T Consensus 85 G~QGYfPlL~---~~~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T 1w8x_N 85 GKQGYFPLLV---PGRAKFVARHLGSGKKSVPLFFLNFTIAQ 123 (126)
T ss_dssp CCCSSCCEEE---CCSSSSEEEEEEEESSCCCCSCCC-----
T ss_pred CCcccceeec---cchhhhhhhhhcCCCcceeeEEEeceeee
Confidence 3579999999 3455565 678888888644
No 17
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=27.38 E-value=12 Score=23.97 Aligned_cols=19 Identities=16% Similarity=0.254 Sum_probs=17.9
Q ss_pred cccCcHHHHHHHHHHHHhc
Q 033749 53 IYFNHPLFMQLLKEAEEEY 71 (112)
Q Consensus 53 ~yLnhP~F~~LL~~AeEEf 71 (112)
.||+.-.|++++.|+.+||
T Consensus 32 ~yLsdedF~~vFgmsr~eF 50 (68)
T 1qzp_A 32 RHLSAEDFSRVFAMSPEEF 50 (68)
T ss_dssp GGBCHHHHHHHSSSCHHHH
T ss_pred hhCCHHHHHHHHCcCHHHH
Confidence 6999999999999999997
No 18
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=27.10 E-value=8.1 Score=26.40 Aligned_cols=12 Identities=50% Similarity=0.805 Sum_probs=9.1
Q ss_pred cccCcHHHHHHH
Q 033749 53 IYFNHPLFMQLL 64 (112)
Q Consensus 53 ~yLnhP~F~~LL 64 (112)
.|||||.|.-|-
T Consensus 5 ~YLNHPtFGlLy 16 (89)
T 2xko_C 5 NYLNHPTFGLLY 16 (89)
T ss_dssp CEEEETTTEEEE
T ss_pred ccccCCccchhh
Confidence 599999986553
No 19
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=25.29 E-value=19 Score=24.30 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=18.5
Q ss_pred cccCcHHHHHHHHHHHHhcC
Q 033749 53 IYFNHPLFMQLLKEAEEEYG 72 (112)
Q Consensus 53 ~yLnhP~F~~LL~~AeEEfG 72 (112)
.||+.-.|++++.|+.+||-
T Consensus 46 ~YLSdedF~~vFgMsr~eF~ 65 (88)
T 1ujs_A 46 RHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHHT
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999983
No 20
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=24.98 E-value=15 Score=23.48 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=18.4
Q ss_pred cccCcHHHHHHHHHHHHhcC
Q 033749 53 IYFNHPLFMQLLKEAEEEYG 72 (112)
Q Consensus 53 ~yLnhP~F~~LL~~AeEEfG 72 (112)
.||+.-.|++++.++.+||-
T Consensus 31 ~yLsdedF~~vFgmsr~eF~ 50 (67)
T 2k6m_S 31 IYLTDEDFEFALDMTRDEYN 50 (67)
T ss_dssp GGSCHHHHHHHTSSCHHHHT
T ss_pred hhCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999983
No 21
>3pmi_A PWWP domain-containing protein MUM1; structural genomics consortium, SGC, protein binding, nucLeu; HET: UNL; 2.82A {Homo sapiens}
Probab=23.59 E-value=28 Score=25.30 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=26.0
Q ss_pred CcceEEEEeccccCc---HHHHHHHHHHHHhcC
Q 033749 43 EEQQRVVVPVIYFNH---PLFMQLLKEAEEEYG 72 (112)
Q Consensus 43 ~e~~RFvVPv~yLnh---P~F~~LL~~AeEEfG 72 (112)
.+++=|-||+.-|+| -.-++|+++|.|+|+
T Consensus 46 ~ekrGi~V~LrrLK~fDC~ek~~L~~rAre~Y~ 78 (134)
T 3pmi_A 46 PKMKGFTVSLKSLKHFDCKEKQTLLNQAREDFN 78 (134)
T ss_dssp TTSCCEEEEGGGCEETTSTTHHHHHHHHTTTCH
T ss_pred cccCceEeEcccCCCCChHhHHHHHHHHHHHhc
Confidence 567889999998877 467999999999986
No 22
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=22.07 E-value=49 Score=22.77 Aligned_cols=39 Identities=8% Similarity=0.295 Sum_probs=28.3
Q ss_pred ceEEEEecc-ccCcHHHHHHHHHHHHhcCCCCCCceEEcCcH
Q 033749 45 QQRVVVPVI-YFNHPLFMQLLKEAEEEYGFDQKGTITIPCHV 85 (112)
Q Consensus 45 ~~RFvVPv~-yLnhP~F~~LL~~AeEEfG~~~~G~L~IPC~~ 85 (112)
+-||-||.. .|.-..-..|++++..- ...+|.|+|-|+.
T Consensus 45 ~Lrf~i~t~~~Lp~~~k~rl~~~~~~r--i~~~G~ivv~~q~ 84 (112)
T 1j26_A 45 EVRFHLASADWIEEPVRQKIALTHKNK--INKAGELVLTSES 84 (112)
T ss_dssp EEEEEGGGCTTSCHHHHHHHHHHTTTT--BCSSSEEEEEECC
T ss_pred EEEEeccccccCCHHHHHHHHHhhccc--cccCCeEEEEECC
Confidence 347888884 78877777777774322 3568999999984
No 23
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=21.02 E-value=1e+02 Score=19.68 Aligned_cols=55 Identities=11% Similarity=0.145 Sum_probs=38.6
Q ss_pred EEEEEccCCcceEEEEeccccC--cHHHHHHHHHHHHhcCCCCCCceEEc--CcHHHHHHHHHHHhcc
Q 033749 35 LAIKVGQGEEQQRVVVPVIYFN--HPLFMQLLKEAEEEYGFDQKGTITIP--CHVEEFRYVQGMIDRE 98 (112)
Q Consensus 35 ~aVYVG~g~e~~RFvVPv~yLn--hP~F~~LL~~AeEEfG~~~~G~L~IP--C~~~~Fe~vl~~l~~~ 98 (112)
+.+.|| .++|-+.-..|. .|.|++++.... ..+..|.|| .+...|+.++......
T Consensus 35 v~l~v~----~~~f~aHk~vLaa~S~yF~~~f~~~~-----~e~~~i~l~~~~~~~~f~~~l~~iYtg 93 (125)
T 3ohu_A 35 VTLIVE----RKEFRAHRAVLAACSEYFWQALVGQT-----KNDLVVSLPEEVTARGFGPLLQFAYTA 93 (125)
T ss_dssp EEEEET----TEEEEECHHHHHHHBHHHHHHHTTCC-----CSSCEEECCTTCCHHHHHHHHHHHTTS
T ss_pred eEEEEC----CEEEechHHHHHHcCHHHHHHhcCCC-----CCCcEEEeCCCCCHHHHHHHHHhHcCC
Confidence 455565 357777666664 799999987643 225678887 7999999988876543
No 24
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=20.89 E-value=45 Score=21.76 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=10.6
Q ss_pred cccCCCccccCCCCCceEEEEE
Q 033749 18 LHHHGKKQVIRDVPKGCLAIKV 39 (112)
Q Consensus 18 ~h~~~~~~~~~~vpkG~~aVYV 39 (112)
||.||+.--......|...+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~vv~l 27 (125)
T 2ka5_A 6 IHHHHHHMFPYKIVDDVVILMP 27 (125)
T ss_dssp CCCSCCCCCCEEECSSCEEECC
T ss_pred ccccccccccceeeCCEEEEEE
Confidence 4444443333334455666655
No 25
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=20.41 E-value=69 Score=22.46 Aligned_cols=63 Identities=19% Similarity=0.222 Sum_probs=45.2
Q ss_pred CCceEEEEEccCCcceEEEEeccccC-cHHHHHHHHHHHHhcCC-CCCCceEEcCcHHHHHHHHHHHhccC
Q 033749 31 PKGCLAIKVGQGEEQQRVVVPVIYFN-HPLFMQLLKEAEEEYGF-DQKGTITIPCHVEEFRYVQGMIDREN 99 (112)
Q Consensus 31 pkG~~aVYVG~g~e~~RFvVPv~yLn-hP~F~~LL~~AeEEfG~-~~~G~L~IPC~~~~Fe~vl~~l~~~~ 99 (112)
....+.+.|| .+||.+..+-|. .|. .+|..++...-+ +.+|.+-|-.+...|++||.......
T Consensus 33 ~~~~V~LNVG----G~~F~T~~~TL~~~P~--S~L~~~~~~~~~~~~~g~yFiDRdp~~F~~ILnflR~G~ 97 (140)
T 2nz0_B 33 QDELIVLNVS----GRRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGK 97 (140)
T ss_dssp CCCEEEEEET----TEEEEEEHHHHHTCTT--STTTSGGGGGSEETTTTEEEECSCHHHHHHHHHHHHHSS
T ss_pred CCCEEEEEEC----CEEEEeeHHHHhcCCC--eeecccCCcccccCCCCeEEEeCCcHHHHHHHHHHhcCC
Confidence 4578999998 389999887663 332 234444443334 35799999999999999999887654
No 26
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=20.19 E-value=1.6e+02 Score=19.35 Aligned_cols=58 Identities=19% Similarity=0.277 Sum_probs=41.5
Q ss_pred EEEEEccCCcceEEEEecccc--CcHHHHHHHHHHHHhcCCCCCCceEEc-CcHHHHHHHHHHHhccC
Q 033749 35 LAIKVGQGEEQQRVVVPVIYF--NHPLFMQLLKEAEEEYGFDQKGTITIP-CHVEEFRYVQGMIDREN 99 (112)
Q Consensus 35 ~aVYVG~g~e~~RFvVPv~yL--nhP~F~~LL~~AeEEfG~~~~G~L~IP-C~~~~Fe~vl~~l~~~~ 99 (112)
+.+.|| .++|-+.-..| ..|.|++++...-.| ..+..|.|| .+.+.|+.++.......
T Consensus 37 v~l~v~----~~~~~~Hk~iL~~~S~~F~~~f~~~~~e---~~~~~i~l~~~~~~~f~~~l~~~Yt~~ 97 (172)
T 3htm_A 37 CCLCVA----GQEFQAHKAILAARSPVFSAMFEHEMEE---SKKNRVEINDVEPEVFKEMMCFIYTGK 97 (172)
T ss_dssp EEEEET----TEEEEECHHHHHHHCHHHHHHHHSCCCG---GGTTEEEECSSCHHHHHHHHHHHHHSC
T ss_pred eEEEEC----CEEEEeeHHHHHHcCHHHHHHHccCccc---cCCCeEEecCCCHHHHHHHHHHHhCCC
Confidence 566675 36788887777 579999999853212 134688887 68999999888766554
Done!