Query 033749
Match_columns 112
No_of_seqs 120 out of 603
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 09:27:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033749.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033749hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1unda_ a.14.1.1 (A:) Advillin 51.0 1.9 0.00014 23.5 0.4 18 54-71 1-18 (36)
2 d1yu5x1 a.14.1.1 (X:10-76) Vil 31.7 5.8 0.00042 24.0 0.5 19 53-71 31-49 (67)
3 d1nn7a_ d.42.1.2 (A:) Potassiu 29.0 6.3 0.00046 24.7 0.3 59 35-99 2-62 (105)
4 d1y74b1 a.194.1.1 (B:83-132) P 28.6 11 0.00077 21.7 1.3 20 53-72 26-49 (50)
5 d2bkfa1 d.15.2.2 (A:1-85) Next 28.3 62 0.0045 19.9 5.9 47 43-91 13-68 (85)
6 d1t1da_ d.42.1.2 (A:) Shaker p 26.6 17 0.0012 22.5 2.1 57 35-97 3-62 (100)
7 d1qzpa_ a.14.1.1 (A:) Dematin 25.5 6.3 0.00046 24.0 -0.2 19 53-71 32-50 (68)
8 d2al3a1 d.15.1.2 (A:10-85) Tet 25.0 44 0.0032 20.3 3.9 31 43-75 8-38 (76)
9 d1t2da2 d.162.1.1 (A:151-315) 25.0 44 0.0032 21.3 4.2 32 35-70 126-157 (165)
10 d1ujsa_ a.14.1.1 (A:) Actin-bi 24.3 9.3 0.00068 24.3 0.5 20 53-72 46-65 (88)
11 d1z3xa2 a.261.1.1 (A:88-235) G 23.4 1.5 0.00011 30.3 -3.9 30 27-60 117-146 (148)
12 d1zj8a1 d.58.36.1 (A:327-406) 22.4 57 0.0041 18.6 3.9 51 45-96 17-73 (80)
13 d1yu8x1 a.14.1.1 (X:42-76) Vil 22.2 11 0.00077 20.1 0.3 17 55-71 1-17 (35)
14 d1tjya_ c.93.1.1 (A:) AI-2 rec 21.8 50 0.0036 21.4 4.0 30 45-74 3-35 (316)
15 d3kvta_ d.42.1.2 (A:) akv3.1 v 21.6 9.1 0.00067 23.8 -0.0 59 34-99 3-65 (103)
16 d1y6ia2 a.261.1.1 (A:83-233) M 20.7 2.3 0.00017 29.4 -3.4 30 28-62 118-148 (151)
No 1
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.03 E-value=1.9 Score=23.46 Aligned_cols=18 Identities=11% Similarity=0.421 Sum_probs=16.3
Q ss_pred ccCcHHHHHHHHHHHHhc
Q 033749 54 YFNHPLFMQLLKEAEEEY 71 (112)
Q Consensus 54 yLnhP~F~~LL~~AeEEf 71 (112)
||+.-.|++++.++.+||
T Consensus 1 yLsd~dF~~vFgmsr~eF 18 (36)
T d1unda_ 1 YLSEQDFVSVFGITRGQF 18 (36)
T ss_dssp CCCHHHHHHHHSSCHHHH
T ss_pred CCCHHHHHHHHCcCHHHH
Confidence 788899999999999987
No 2
>d1yu5x1 a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=31.71 E-value=5.8 Score=24.04 Aligned_cols=19 Identities=5% Similarity=0.111 Sum_probs=17.9
Q ss_pred cccCcHHHHHHHHHHHHhc
Q 033749 53 IYFNHPLFMQLLKEAEEEY 71 (112)
Q Consensus 53 ~yLnhP~F~~LL~~AeEEf 71 (112)
.||+.-.|++++.++.+||
T Consensus 31 ~yLsd~dF~~vFgms~~eF 49 (67)
T d1yu5x1 31 NHLSDEDFKAVFGMTRSAF 49 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHH
T ss_pred hhCCHHHHHHHHCcCHHHH
Confidence 6999999999999999997
No 3
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=28.97 E-value=6.3 Score=24.73 Aligned_cols=59 Identities=14% Similarity=0.157 Sum_probs=40.3
Q ss_pred EEEEEccCCcceEEEEecccc-CcHHHHHHHHHHHHhcCC-CCCCceEEcCcHHHHHHHHHHHhccC
Q 033749 35 LAIKVGQGEEQQRVVVPVIYF-NHPLFMQLLKEAEEEYGF-DQKGTITIPCHVEEFRYVQGMIDREN 99 (112)
Q Consensus 35 ~aVYVG~g~e~~RFvVPv~yL-nhP~F~~LL~~AeEEfG~-~~~G~L~IPC~~~~Fe~vl~~l~~~~ 99 (112)
+.+.|| .++|.+..+-| +.|.. +|.+.....-+ +.+|.+-|--+...|+.||.......
T Consensus 2 I~LNVG----G~~f~t~~~TL~~~p~s--~l~~~~~~~~~~~~~~~~FiDRdp~~F~~IL~ylR~G~ 62 (105)
T d1nn7a_ 2 IVLNVS----GTRFQTWQDTLERYPDT--LLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYRTGK 62 (105)
T ss_dssp EEEEET----TEEEEECHHHHHTSCSS--STTSGGGGGGEEGGGTEEEECSCTTTHHHHHHHHHHSC
T ss_pred EEEEEC----CEEEEEeHHHHhcCCCC--CccccccccCcCCCCCcEEEeCCHHHHHHHHHHHhcCc
Confidence 567888 38999998876 44431 12222222222 45799999999999999999887653
No 4
>d1y74b1 a.194.1.1 (B:83-132) Peripheral plasma membrane protein cask {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.56 E-value=11 Score=21.73 Aligned_cols=20 Identities=40% Similarity=0.658 Sum_probs=15.0
Q ss_pred cccCcHHHHHHHHH----HHHhcC
Q 033749 53 IYFNHPLFMQLLKE----AEEEYG 72 (112)
Q Consensus 53 ~yLnhP~F~~LL~~----AeEEfG 72 (112)
..|+.|-||+||.- |.+.||
T Consensus 26 ~lL~~PH~~aLL~aHD~VA~k~Y~ 49 (50)
T d1y74b1 26 RILTQPHFMALLQTHDVVAHEVYS 49 (50)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhCHHHHHHHHHHHHHHHHhcc
Confidence 36889999999974 555565
No 5
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.26 E-value=62 Score=19.85 Aligned_cols=47 Identities=11% Similarity=0.150 Sum_probs=35.3
Q ss_pred CcceEEEEeccccCcHHHHHHHHHHHHhcCCC--------C-CCceEEcCcHHHHHHH
Q 033749 43 EEQQRVVVPVIYFNHPLFMQLLKEAEEEYGFD--------Q-KGTITIPCHVEEFRYV 91 (112)
Q Consensus 43 ~e~~RFvVPv~yLnhP~F~~LL~~AeEEfG~~--------~-~G~L~IPC~~~~Fe~v 91 (112)
++.+||.|+.. +.+.|.+|..+-+.-|+.+ . +--++|.|+++.=|-+
T Consensus 13 ~dt~RF~ls~~--~~~~~~~L~~~i~~rf~l~~~~lkY~Ddd~e~v~l~~d~dl~E~~ 68 (85)
T d2bkfa1 13 NEIQSFLVSDP--ENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYEEAL 68 (85)
T ss_dssp TEEEEEEESCG--GGCCHHHHHHHHHHHHTCSSEEEEEECTTSCEEEECSHHHHHHHH
T ss_pred CceEEEEecCC--CCCcHHHHHHHHHHhcCcccceEEEEcCCCCEEEEecHHHHHHHH
Confidence 78999998543 4677899999999888743 2 3468999998765554
No 6
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}
Probab=26.58 E-value=17 Score=22.51 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=39.3
Q ss_pred EEEEEccCCcceEEEEeccccCc-H--HHHHHHHHHHHhcCCCCCCceEEcCcHHHHHHHHHHHhc
Q 033749 35 LAIKVGQGEEQQRVVVPVIYFNH-P--LFMQLLKEAEEEYGFDQKGTITIPCHVEEFRYVQGMIDR 97 (112)
Q Consensus 35 ~aVYVG~g~e~~RFvVPv~yLnh-P--~F~~LL~~AeEEfG~~~~G~L~IPC~~~~Fe~vl~~l~~ 97 (112)
+.+-|| .++|.+..+-|.. | .+..|.... ..+ -+.+|.+-|--+...|++||.....
T Consensus 3 I~LNVG----G~~f~t~~~tL~~~p~s~l~~l~~~~-~~~-~~~~g~~FiDRdp~~F~~IL~flR~ 62 (100)
T d1t1da_ 3 VVINVS----GLRFETQLKTLNQFPDTLLGNPQKRN-RYY-DPLRNEYFFDRNRPSFDAILYFYQS 62 (100)
T ss_dssp EEEEET----TEEEEEEHHHHHTSTTSTTTCHHHHG-GGE-ETTTTEEEECSCSTTHHHHHHHHHT
T ss_pred EEEEEC----CEEEEEeHHHHhhCCCchhHHHHhCC-CcC-CCCCCeEEEecCHHHHHHHHHHHhc
Confidence 567888 3899998877654 4 333333221 111 1457999999999999999988764
No 7
>d1qzpa_ a.14.1.1 (A:) Dematin {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.51 E-value=6.3 Score=23.97 Aligned_cols=19 Identities=16% Similarity=0.254 Sum_probs=17.9
Q ss_pred cccCcHHHHHHHHHHHHhc
Q 033749 53 IYFNHPLFMQLLKEAEEEY 71 (112)
Q Consensus 53 ~yLnhP~F~~LL~~AeEEf 71 (112)
.||+.-.|++++.++.+||
T Consensus 32 ~yLsd~dF~~vFgms~~eF 50 (68)
T d1qzpa_ 32 RHLSAEDFSRVFAMSPEEF 50 (68)
T ss_dssp GGBCHHHHHHHSSSCHHHH
T ss_pred hhCCHHHHHHHHCcCHHHH
Confidence 7999999999999999987
No 8
>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.00 E-value=44 Score=20.27 Aligned_cols=31 Identities=19% Similarity=0.333 Sum_probs=24.9
Q ss_pred CcceEEEEeccccCcHHHHHHHHHHHHhcCCCC
Q 033749 43 EEQQRVVVPVIYFNHPLFMQLLKEAEEEYGFDQ 75 (112)
Q Consensus 43 ~e~~RFvVPv~yLnhP~F~~LL~~AeEEfG~~~ 75 (112)
...+|..|+++= .-...+.|++|-+.|||+.
T Consensus 8 ~~~rR~~VKvtP--~t~l~~VL~eaC~k~~~~~ 38 (76)
T d2al3a1 8 PNGRRHTVKVTP--STVLLQVLEDTCRRQDFNP 38 (76)
T ss_dssp TTSCEEEECCCT--TSBHHHHHHHHHHHTTCCG
T ss_pred CCCcEEEEEeCC--CcCHHHHHHHHHHHhCCCh
Confidence 567999998853 3367889999999999975
No 9
>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=24.99 E-value=44 Score=21.33 Aligned_cols=32 Identities=19% Similarity=0.181 Sum_probs=22.4
Q ss_pred EEEEEccCCcceEEEEeccccCcHHHHHHHHHHHHh
Q 033749 35 LAIKVGQGEEQQRVVVPVIYFNHPLFMQLLKEAEEE 70 (112)
Q Consensus 35 ~aVYVG~g~e~~RFvVPv~yLnhP~F~~LL~~AeEE 70 (112)
+||-+| .+.-.=++++. |+ +.=|++|++|++|
T Consensus 126 ~Pv~lg--~~Gv~~i~~l~-L~-~~E~~~L~~s~~~ 157 (165)
T d1t2da2 126 TPVVLG--ANGVEQVIELQ-LN-SEEKAKFDEAIAE 157 (165)
T ss_dssp EEEEEE--TTEEEEECCCC-CC-HHHHHHHHHHHHH
T ss_pred eeEEEc--CCceEEEeCCC-CC-HHHHHHHHHHHHH
Confidence 466666 44455567776 65 7778899988876
No 10
>d1ujsa_ a.14.1.1 (A:) Actin-binding LIM protein homologue KIAA0843 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.28 E-value=9.3 Score=24.28 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=18.4
Q ss_pred cccCcHHHHHHHHHHHHhcC
Q 033749 53 IYFNHPLFMQLLKEAEEEYG 72 (112)
Q Consensus 53 ~yLnhP~F~~LL~~AeEEfG 72 (112)
.||+.-.|++++.++.+||-
T Consensus 46 ~YLSdedF~~vFgMsr~eF~ 65 (88)
T d1ujsa_ 46 RHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHHT
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999983
No 11
>d1z3xa2 a.261.1.1 (A:88-235) GUN4-like protein Ycf53 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=23.43 E-value=1.5 Score=30.33 Aligned_cols=30 Identities=27% Similarity=0.419 Sum_probs=19.2
Q ss_pred cCCCCCceEEEEEccCCcceEEEEeccccCcHHH
Q 033749 27 IRDVPKGCLAIKVGQGEEQQRVVVPVIYFNHPLF 60 (112)
Q Consensus 27 ~~~vpkG~~aVYVG~g~e~~RFvVPv~yLnhP~F 60 (112)
+..+|+||+|+.- ..+-.-|=-..|+||.|
T Consensus 117 ~l~AP~GHLP~~~----~lrg~~~~~~~l~h~a~ 146 (148)
T d1z3xa2 117 DLSAPRGHLPLTN----QLRGVQVLNALLNHPAW 146 (148)
T ss_dssp STTSCTTCCSCCC----CTTCSHHHHHHHTCGGG
T ss_pred cCCCCCCCCCcCC----ccchHHHHHHHhcCccc
Confidence 3468999999863 23333344466777765
No 12
>d1zj8a1 d.58.36.1 (A:327-406) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=22.41 E-value=57 Score=18.63 Aligned_cols=51 Identities=8% Similarity=-0.061 Sum_probs=31.9
Q ss_pred ceEEEEeccccCcHHHHHHHHHHHHhcCC-----CCCCceEEc-CcHHHHHHHHHHHh
Q 033749 45 QQRVVVPVIYFNHPLFMQLLKEAEEEYGF-----DQKGTITIP-CHVEEFRYVQGMID 96 (112)
Q Consensus 45 ~~RFvVPv~yLnhP~F~~LL~~AeEEfG~-----~~~G~L~IP-C~~~~Fe~vl~~l~ 96 (112)
.-|..+|.-.++-..++.|.+.|+ +||- ....-|.|+ =+.+..+.|+....
T Consensus 17 ~vri~~p~G~it~~ql~~la~ia~-~yg~g~i~lTtrq~l~l~~i~~~~~~~v~~~L~ 73 (80)
T d1zj8a1 17 AVGVAPIAGRVSGTILTAVADLMA-RAGSDRIRFTPYQKLVILDIPDALLDDLIAGLD 73 (80)
T ss_dssp EEEEBCBTTEEEHHHHHHHHHHHH-HHTCCCEEECTTSCEEEEEECHHHHHHHHHHHH
T ss_pred EEEEeccCcEECHHHHHHHHHHHH-HhCCCeEEECCCCcEEEcCCCHHHHHHHHHHHH
Confidence 345667888888888888877655 6652 234556666 45555666555443
No 13
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=22.17 E-value=11 Score=20.13 Aligned_cols=17 Identities=6% Similarity=0.221 Sum_probs=12.9
Q ss_pred cCcHHHHHHHHHHHHhc
Q 033749 55 FNHPLFMQLLKEAEEEY 71 (112)
Q Consensus 55 LnhP~F~~LL~~AeEEf 71 (112)
|+.-.|++++.++.+||
T Consensus 1 Lsd~dF~~vfgmsr~eF 17 (35)
T d1yu8x1 1 LSDEDFKAVFGMTRSAF 17 (35)
T ss_dssp SCHHHHHHHHSSCHHHH
T ss_pred CCHHHHHHHHCCCHHHH
Confidence 45667888888888876
No 14
>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}
Probab=21.77 E-value=50 Score=21.41 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=22.5
Q ss_pred ceEEEEeccccCcHHHHHHHHHHH---HhcCCC
Q 033749 45 QQRVVVPVIYFNHPLFMQLLKEAE---EEYGFD 74 (112)
Q Consensus 45 ~~RFvVPv~yLnhP~F~~LL~~Ae---EEfG~~ 74 (112)
.+|..+=+..+++|.|+++.+-++ +++||+
T Consensus 3 ~~kI~~i~~~~~npf~~~~~~g~~~~a~~~G~~ 35 (316)
T d1tjya_ 3 AERIAFIPKLVGVGFFTSGGNGAQEAGKALGID 35 (316)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHHHHHTCE
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCE
Confidence 467777788899999999966544 577764
No 15
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}
Probab=21.56 E-value=9.1 Score=23.79 Aligned_cols=59 Identities=15% Similarity=0.124 Sum_probs=41.2
Q ss_pred eEEEEEccCCcceEEEEeccccCc-H--HHHHHHHHHHHhcCC-CCCCceEEcCcHHHHHHHHHHHhccC
Q 033749 34 CLAIKVGQGEEQQRVVVPVIYFNH-P--LFMQLLKEAEEEYGF-DQKGTITIPCHVEEFRYVQGMIDREN 99 (112)
Q Consensus 34 ~~aVYVG~g~e~~RFvVPv~yLnh-P--~F~~LL~~AeEEfG~-~~~G~L~IPC~~~~Fe~vl~~l~~~~ 99 (112)
.+.+-|| .++|.+..+-|.. | .|..+. +....+ +.+|.+-|--+...|++||.......
T Consensus 3 rI~LNVG----G~~F~t~~~tL~~~~~s~l~~~~---~~~~~~~~~~~~~fiDRdp~~F~~IL~ylR~g~ 65 (103)
T d3kvta_ 3 RVIINVG----GIRHETYKATLKKIPATRLSRLT---EGMLNYDPVLNEYFFDRHPGVFAQIINYYRSGK 65 (103)
T ss_dssp EEEEEET----TEEEEEEHHHHTTSCSSTTTTCC---TTSTTEETTTTEEEECSCTTTHHHHHHHHHHSC
T ss_pred EEEEEEC----CEEEEEeHHHHhhCccchhHHHH---cCCCccCCCCCcEEecCCHHHHHHHHHHHccCC
Confidence 4667888 3999999887763 4 232222 222223 34789999999999999998887654
No 16
>d1y6ia2 a.261.1.1 (A:83-233) Mg-chelatase cofactor Gun4 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=20.67 E-value=2.3 Score=29.38 Aligned_cols=30 Identities=30% Similarity=0.569 Sum_probs=19.1
Q ss_pred CCCCCceEEEEEc-cCCcceEEEEeccccCcHHHHH
Q 033749 28 RDVPKGCLAIKVG-QGEEQQRVVVPVIYFNHPLFMQ 62 (112)
Q Consensus 28 ~~vpkG~~aVYVG-~g~e~~RFvVPv~yLnhP~F~~ 62 (112)
..+|+||+|+.-. .|- | +=-+.|+||.|.+
T Consensus 118 l~AP~GHLP~~~~lrG~---~--~~~~l~~h~~~~~ 148 (151)
T d1y6ia2 118 LSAPQGHLPLLNQLRGV---R--VAESLYRHPVWSQ 148 (151)
T ss_dssp TTSCTTCCSCCCCTTCT---H--HHHHHHTSTHHHH
T ss_pred CCCCCCCCCccchhhhH---H--HHHHHHcCcchhh
Confidence 4689999998642 111 1 2334788998864
Done!