Prediction of Enzyme Commission (EC) Number
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
ID Alignment Graph Length
Definition
E-value Query 112
PTZ00106 108
PTZ00106, PTZ00106, 60S ribosomal protein L30; Pro
6e-63 COG1911 100
COG1911, RPL30, Ribosomal protein L30E [Translatio
2e-43 PRK01018 99
PRK01018, PRK01018, 50S ribosomal protein L30e; Re
3e-27 pfam01248 95
pfam01248, Ribosomal_L7Ae, Ribosomal protein L7Ae/
3e-25 COG1358 116
COG1358, RPL8A, Ribosomal protein HS6-type (S12/L3
5e-05
>gnl|CDD|185450 PTZ00106, PTZ00106, 60S ribosomal protein L30; Provisional
Back Hide alignment and domain information
Score = 186 bits (474), Expect = 6e-63
Identities = 72/107 (67%), Positives = 91/107 (85%)
Query: 2 VTSKKTKKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIE 61
+ KK KK ESIN++L LVMKSGKYTLG K+ L++LR+ K KL+++SNNCPP+R+SEIE
Sbjct: 1 MMKKKKKKAQESINSKLQLVMKSGKYTLGTKSTLKALRNGKAKLVIISNNCPPIRRSEIE 60
Query: 62 YYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSL 108
YYAML+K GVHHY GNN DLGTACG++FRVS +SI D GDSDI+++L
Sbjct: 61 YYAMLSKTGVHHYAGNNNDLGTACGRHFRVSVMSITDAGDSDILRAL 107
>gnl|CDD|224823 COG1911, RPL30, Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Score = 137 bits (346), Expect = 2e-43
Identities = 46/99 (46%), Positives = 66/99 (66%)
Query: 8 KKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLA 67
+ + L L +K+GK LG K ++SL+ K KLI++++NCP K +IEYYA L+
Sbjct: 1 SSMGDDVEKELKLAVKTGKVILGSKRTIKSLKLGKAKLIIIASNCPKELKEDIEYYAKLS 60
Query: 68 KVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIK 106
+ V+ Y G +V+LGT CGK FRV+ L+IID GDSDI+
Sbjct: 61 DIPVYVYEGTSVELGTVCGKPFRVAALAIIDEGDSDILA 99
>gnl|CDD|179205 PRK01018, PRK01018, 50S ribosomal protein L30e; Reviewed
Back Show alignment and domain information
Score = 95.8 bits (239), Expect = 3e-27
Identities = 41/94 (43%), Positives = 66/94 (70%)
Query: 13 SINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVH 72
N L + + +GK LG K +++++ K KL+++++NCP K +IEYYA L+ + V+
Sbjct: 3 DFNRELRVAVDTGKVILGSKRTIKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVY 62
Query: 73 HYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIK 106
Y G++V+LGT CGK F VS L+I+DPG+SDI++
Sbjct: 63 EYEGSSVELGTLCGKPFTVSALAIVDPGESDILE 96
>gnl|CDD|216387 pfam01248, Ribosomal_L7Ae, Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Back Show alignment and domain information
Score = 90.3 bits (225), Expect = 3e-25
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 12 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSE-IEYYAMLAKVG 70
+++ L +K+GK LG K V ++LR K KL++++ +C P K + + +
Sbjct: 1 DALKEVLKKALKTGKLVLGLKEVTKALRRGKAKLVIIAEDCDPEEKVKLLPALCK--EKN 58
Query: 71 VHHYNGNN-VDLGTACGKYFRVSCLSIIDPGDSDII 105
V + + +LG ACGK VS L+I D GDS I+
Sbjct: 59 VPYVYVPSKKELGEACGKPRPVSALAIKDNGDSKIL 94
This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118. Length = 95
>gnl|CDD|224277 COG1358, RPL8A, Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Score = 39.2 bits (92), Expect = 5e-05
Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 3/108 (2%)
Query: 2 VTSKKTKKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNC-PPLRKSEI 60
+ + + L ++GK G V +++ K KL++++ + P +
Sbjct: 3 AKPLAPEMLEQKALSLLGKASRAGKLKKGTNEVTKAIERGKAKLVVIAEDVSPEELVKHL 62
Query: 61 EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSL 108
V Y G+ +LG A GK R ++I+D G + ++ L
Sbjct: 63 PALCEEKNVPY-VYVGSKKELGKAVGKEVRKV-VAIVDKGFAKKLEDL 108
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
112
PTZ00106 108
60S ribosomal protein L30; Provisional
100.0 PRK07283 98
hypothetical protein; Provisional
100.0 PRK05583 104
ribosomal protein L7Ae family protein; Provisional
99.98 PRK07714 100
hypothetical protein; Provisional
99.98 PRK01018 99
50S ribosomal protein L30e; Reviewed
99.97 TIGR03677 117
rpl7ae 50S ribosomal protein L7Ae. Multifunctional
99.97 PRK04175 122
rpl7ae 50S ribosomal protein L7Ae; Validated
99.96 PF01248 95
Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/G
99.94 COG1358 116
RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Tr
99.94 PRK09190 220
hypothetical protein; Provisional
99.94 PRK06683 82
hypothetical protein; Provisional
99.93 COG1911 100
RPL30 Ribosomal protein L30E [Translation, ribosom
99.93 PRK13602 82
putative ribosomal protein L7Ae-like; Provisional
99.93 PRK13601 82
putative L7Ae-like ribosomal protein; Provisional
99.91 PRK13600 84
putative ribosomal protein L7Ae-like; Provisional
99.86 KOG2988 112
consensus 60S ribosomal protein L30 [Translation,
99.78 PTZ00222 263
60S ribosomal protein L7a; Provisional
99.74 PTZ00365 266
60S ribosomal protein L7Ae-like; Provisional
99.67 KOG3167 153
consensus Box H/ACA snoRNP component, involved in
99.66 KOG3387 131
consensus 60S ribosomal protein 15.5kD/SNU13, NHP2
99.51 KOG3406 134
consensus 40S ribosomal protein S12 [Translation,
99.46 PF08032 76
SpoU_sub_bind: RNA 2'-O ribose methyltransferase s
97.63 PF08228 158
RNase_P_pop3: RNase P subunit Pop3; InterPro: IPR0
96.84 PF03465 113
eRF1_3: eRF1 domain 3; InterPro: IPR005142 This do
96.73 TIGR03676 403
aRF1/eRF1 peptide chain release factor 1, archaeal
96.36 TIGR00111 351
pelota probable translation factor pelota. This mo
95.84 PRK04011 411
peptide chain release factor 1; Provisional
95.74 TIGR00108 409
eRF peptide chain release factor eRF/aRF, subunit
95.62 PRK11181 244
23S rRNA (guanosine-2'-O-)-methyltransferase; Prov
95.19 cd01422 115
MGS Methylglyoxal synthase catalyzes the enolizati
94.52 TIGR00186 237
rRNA_methyl_3 rRNA methylase, putative, group 3. t
94.12 PRK05234 142
mgsA methylglyoxal synthase; Validated
94.0 PRK10864 346
putative methyltransferase; Provisional
93.66 PF02142 95
MGS: MGS-like domain This is a subfamily of this f
92.36 PF10087 97
DUF2325: Uncharacterized protein conserved in bact
91.79 COG0566 260
SpoU rRNA methylases [Translation, ribosomal struc
91.44 smart00851 90
MGS MGS-like domain. This domain composes the whol
91.19 cd00532 112
MGS-like MGS-like domain. This domain composes the
90.7 KOG4201 289
consensus Anthranilate synthase component II [Amin
88.6 cd01424 110
MGS_CPS_II Methylglyoxal synthase-like domain from
88.3 PF15608 100
PELOTA_1: PELOTA RNA binding domain
86.82 KOG3166 209
consensus 60S ribosomal protein L7A [Translation,
86.24 COG0352 211
ThiE Thiamine monophosphate synthase [Coenzyme met
85.43 PF07997 120
DUF1694: Protein of unknown function (DUF1694); In
85.02 COG1168 388
MalY Bifunctional PLP-dependent enzyme with beta-c
83.03 COG1503 411
eRF1 Peptide chain release factor 1 (eRF1) [Transl
83.03 cd01483 143
E1_enzyme_family Superfamily of activating enzymes
82.05
>PTZ00106 60S ribosomal protein L30; Provisional
Back Hide alignment and domain information
Probab=100.00 E-value=4.9e-36 Score=202.20 Aligned_cols=107 Identities=68% Similarity=1.133 Sum_probs=101.2
Q ss_pred CccchhhhhhHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHH
Q 033750 1 MVTSKKTKKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVD 80 (112)
Q Consensus 1 ~~~~~~~~~~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~e 80 (112)
||+.|+ ++..++|.++||+|+|+|++++|+++|+++|++|++++||+|+|+|+++++++.++|+.++||++.|++|++|
T Consensus 1 ~~~~~~-~~~~~~i~~~Lgla~raGKlv~G~~~vlkalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~t~~e 79 (108)
T PTZ00106 1 MMKKKK-KKAQESINSKLQLVMKSGKYTLGTKSTLKALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNNND 79 (108)
T ss_pred CCcccc-cccHhhHHHHHHHHHHhCCeeecHHHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCCCHHH
Confidence 676665 7799999999999999999999999999999999999999999999999999999999999999866799999
Q ss_pred HHhhhCCcccEEEEEEeCcCchHHHhcC
Q 033750 81 LGTACGKYFRVSCLSIIDPGDSDIIKSL 108 (112)
Q Consensus 81 LG~a~Gk~~~~~vvaI~d~g~a~~i~~~ 108 (112)
||+|||+++++++++|+|+|||++|..+
T Consensus 80 LG~A~Gk~~r~svvaI~D~G~a~~l~~~ 107 (108)
T PTZ00106 80 LGTACGRHFRVSVMSITDAGDSDILRAL 107 (108)
T ss_pred HHHHhCCccCeEEEEEeCcchHHHHhhc
Confidence 9999999999988999999999999765
>PRK07283 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=100.00 E-value=3e-32 Score=180.76 Aligned_cols=96 Identities=27% Similarity=0.413 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcc
Q 033750 10 THESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYF 89 (112)
Q Consensus 10 ~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~ 89 (112)
..++++++||+|+|||++++|+++|+++|++|++++||+|+|+|+++++++.+.|+.++||++. ++|++|||.+||++
T Consensus 2 ~~~~~l~~LglA~raGklv~G~~~v~~aik~gk~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~-~~t~~eLG~a~Gk~- 79 (98)
T PRK07283 2 NKQKISNLLGLAQRAGRIISGEELVVKAIQSGQAKLVFLANDAGPNLTKKVTDKSNYYQVEVST-VFSTLELSAAVGKP- 79 (98)
T ss_pred cHHHHHHHHHHHHHhCCeeEcHHHHHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEE-eCCHHHHHHHhCCC-
Confidence 3579999999999999999999999999999999999999999999999999999999999995 78999999999997
Q ss_pred cEEEEEEeCcCchHHHhcC
Q 033750 90 RVSCLSIIDPGDSDIIKSL 108 (112)
Q Consensus 90 ~~~vvaI~d~g~a~~i~~~ 108 (112)
+. ++||+|+|||++|.++
T Consensus 80 ~~-vvai~d~g~a~~l~~~ 97 (98)
T PRK07283 80 RK-VLAVTDAGFSKKMRSL 97 (98)
T ss_pred ce-EEEEeChhHHHHHHHh
Confidence 44 6999999999999765
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Back Show alignment and domain information
Probab=99.98 E-value=3.7e-32 Score=182.18 Aligned_cols=97 Identities=23% Similarity=0.251 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCccc
Q 033750 11 HESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFR 90 (112)
Q Consensus 11 ~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~ 90 (112)
+++++++||+|+|||++++|+++|+++|++|++++||+|+|+||++++++.++|+.++||++. ++|++|||.+||++++
T Consensus 2 ~~k~l~lLglA~rAGklv~G~~~v~~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~-~~t~~eLg~a~Gk~~~ 80 (104)
T PRK05583 2 MNKFLNFLGLTKKAGKLLEGYNKCEEAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIE-GYSKEELGNAIGRDEI 80 (104)
T ss_pred hHHHHHHHHHHHHhCCeeecHHHHHHHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEE-ecCHHHHHHHhCCCCe
Confidence 478999999999999999999999999999999999999999999999999999999999997 6999999999999975
Q ss_pred EEEEEEeCcCchHHHhcCC
Q 033750 91 VSCLSIIDPGDSDIIKSLP 109 (112)
Q Consensus 91 ~~vvaI~d~g~a~~i~~~~ 109 (112)
+ ++||+|+||++.+.++.
T Consensus 81 ~-~iai~d~g~a~~l~~~~ 98 (104)
T PRK05583 81 K-ILGVKDKNMAKKLLKLW 98 (104)
T ss_pred E-EEEEeChHHHHHHHHHH
Confidence 4 89999999999997755
>PRK07714 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=99.98 E-value=4.7e-32 Score=180.22 Aligned_cols=98 Identities=28% Similarity=0.340 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcc
Q 033750 10 THESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYF 89 (112)
Q Consensus 10 ~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~ 89 (112)
..++++++||+|+|||++++|+++|++++++|++++||+|+|+||++++++.++|+.++||++ +++|++|||.+||+++
T Consensus 2 ~~~~~~~~Lgla~raGk~v~G~~~v~~al~~g~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~-~~~sk~eLG~a~Gk~~ 80 (100)
T PRK07714 2 SMSDWKSFLGLANRARKVISGEELVLKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPMR-KVENRQQLGHAIGKDE 80 (100)
T ss_pred CHHHHHHHHHHHHHhCCeeecHHHHHHHHHhCCceEEEEeCCCCHHHHHHHHHHHHhcCCCEE-EeCCHHHHHHHhCCCc
Confidence 457899999999999999999999999999999999999999999999999999999999999 5899999999999998
Q ss_pred cEEEEEEeCcCchHHHhcCC
Q 033750 90 RVSCLSIIDPGDSDIIKSLP 109 (112)
Q Consensus 90 ~~~vvaI~d~g~a~~i~~~~ 109 (112)
++ ++||+|+|||+.+.++.
T Consensus 81 ~~-~vai~d~g~a~~l~~~~ 99 (100)
T PRK07714 81 RV-VVAVLDEGFAKKLRSML 99 (100)
T ss_pred ce-EEEEeCchhHHHHHHHh
Confidence 87 79999999999997753
>PRK01018 50S ribosomal protein L30e; Reviewed
Back Show alignment and domain information
Probab=99.97 E-value=1.7e-31 Score=177.44 Aligned_cols=95 Identities=43% Similarity=0.813 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccE
Q 033750 12 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRV 91 (112)
Q Consensus 12 ~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~ 91 (112)
+++.+.|++|+|+|+++.|.++|+++|++|++++||+|+|+|+++++++.++|++++||++.|.+|++|||+|||+++++
T Consensus 2 ~~~~~~l~~a~ragkl~~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~tk~eLG~a~Gk~~~~ 81 (99)
T PRK01018 2 MDFNRELRVAVDTGKVILGSKRTIKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEGSSVELGTLCGKPFTV 81 (99)
T ss_pred CCHHHHHHHHHHcCCEEEcHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCHHHHHHHhCCCCCE
Confidence 46788999999999999999999999999999999999999999999999999999999986668999999999999877
Q ss_pred EEEEEeCcCchHHHh
Q 033750 92 SCLSIIDPGDSDIIK 106 (112)
Q Consensus 92 ~vvaI~d~g~a~~i~ 106 (112)
++++|+|+|||+.|.
T Consensus 82 ~~vaI~D~G~a~~~~ 96 (99)
T PRK01018 82 SALAIVDPGESDILE 96 (99)
T ss_pred EEEEEecCCHHHHHH
Confidence 799999999999986
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae
Back Show alignment and domain information
Probab=99.97 E-value=3.8e-30 Score=175.60 Aligned_cols=97 Identities=16% Similarity=0.259 Sum_probs=91.7
Q ss_pred hHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCch-hhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCc
Q 033750 10 THESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPL-RKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKY 88 (112)
Q Consensus 10 ~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~-~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~ 88 (112)
+.++++++|++|+|+|+++.|.++|+++|++|++++||+|+|+||+ ++++++++|+.++|||+ |++|++|||++||++
T Consensus 10 l~~ki~~lL~la~ragkl~~G~~~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~-~~~sk~eLG~a~Gk~ 88 (117)
T TIGR03677 10 LANKALEAVEKARETGKIKKGTNEVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYV-YVKKKEDLGAAAGLE 88 (117)
T ss_pred HHHHHHHHHHHHHHcCCEeEcHHHHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEE-EeCCHHHHHHHhCCC
Confidence 7799999999999999999999999999999999999999999996 78999999999999999 699999999999997
Q ss_pred ccEEEEEEeCcCchHHHhc
Q 033750 89 FRVSCLSIIDPGDSDIIKS 107 (112)
Q Consensus 89 ~~~~vvaI~d~g~a~~i~~ 107 (112)
+++++++|+|+||++.+..
T Consensus 89 ~~~svvaI~d~g~a~~~~~ 107 (117)
T TIGR03677 89 VGAASAAIVDEGKAEELLK 107 (117)
T ss_pred CCeEEEEEEchhhhHHHHH
Confidence 7777999999999998644
Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Back Show alignment and domain information
Probab=99.96 E-value=1.4e-29 Score=173.93 Aligned_cols=98 Identities=17% Similarity=0.271 Sum_probs=91.9
Q ss_pred hhHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCch-hhhhHHHHHHhCCCcEEEecCCHHHHHhhhCC
Q 033750 9 KTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPL-RKSEIEYYAMLAKVGVHHYNGNNVDLGTACGK 87 (112)
Q Consensus 9 ~~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~-~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk 87 (112)
.+.++++++|++|+|+|++++|.++|+++|++|++++||+|+|++|. +++++..+|++++|||+ |++|++|||+|||+
T Consensus 13 ~l~~ki~~lL~la~ragklv~G~~~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~-~~~tk~eLG~a~Gk 91 (122)
T PRK04175 13 ELAEKALEAVEKARDTGKIKKGTNETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYV-YVPSKKDLGKAAGL 91 (122)
T ss_pred HHHHHHHHHHHHHHHcCCEeEcHHHHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEE-EECCHHHHHHHhCC
Confidence 36789999999999999999999999999999999999999999995 57999999999999999 69999999999999
Q ss_pred cccEEEEEEeCcCchHHHhc
Q 033750 88 YFRVSCLSIIDPGDSDIIKS 107 (112)
Q Consensus 88 ~~~~~vvaI~d~g~a~~i~~ 107 (112)
++++++++|+|+||++.+.+
T Consensus 92 ~~~~svvaI~d~g~a~~~~~ 111 (122)
T PRK04175 92 EVGAAAAAIVDAGKAKELVE 111 (122)
T ss_pred CCCeEEEEEechhhhHHHHH
Confidence 97777999999999998754
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms
Back Show alignment and domain information
Probab=99.94 E-value=2e-26 Score=150.74 Aligned_cols=93 Identities=32% Similarity=0.547 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCchhhhh-HHHHHHhCCCcEEEecCCHHHHHhhhCCccc
Q 033750 12 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSE-IEYYAMLAKVGVHHYNGNNVDLGTACGKYFR 90 (112)
Q Consensus 12 ~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~~~~~-i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~ 90 (112)
++++++|++|+++|+++.|.++|.+++++|++++||+|+|++|+...+ +..+|++++|||+ +++|++|||++||+++.
T Consensus 1 ~~i~~~l~~a~~~~~lv~G~~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~-~~~s~~eLG~~~g~~~~ 79 (95)
T PF01248_consen 1 DKIYKLLKLARKAGRLVKGIKEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYV-FVPSKEELGRACGKKRP 79 (95)
T ss_dssp HHHHHHHHHHHHHSEEEESHHHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEE-EESHHHHHHHHTTSSST
T ss_pred ChHHHHHHHHHhcCCEEEchHHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEE-EECCHHHHHHHHCCCCc
Confidence 578999999999999999999999999999999999999999988877 9999999999999 59999999999999977
Q ss_pred EEEEEEeCcCchHHH
Q 033750 91 VSCLSIIDPGDSDII 105 (112)
Q Consensus 91 ~~vvaI~d~g~a~~i 105 (112)
+++++|+|+|+++.+
T Consensus 80 ~~~~~i~d~~~a~~l 94 (95)
T PF01248_consen 80 VSALAIKDAGDAKIL 94 (95)
T ss_dssp SSEEEEEESTTHHHH
T ss_pred EEEEEEECcccchhh
Confidence 778999999999876
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Probab=99.94 E-value=2e-26 Score=157.07 Aligned_cols=100 Identities=21% Similarity=0.318 Sum_probs=93.1
Q ss_pred hhhHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCC-chhhhhHHHHHHhCCCcEEEecCCHHHHHhhhC
Q 033750 8 KKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCP-PLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACG 86 (112)
Q Consensus 8 ~~~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s-~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~G 86 (112)
.+..++++++++.|.++|+++.|.+++.++|++|+++|||+|+|++ +++.++++.+|++++|||+ |++|+.+||++||
T Consensus 9 ~~~~~k~l~~l~~a~~~~ki~~G~~e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv-~V~sk~~LG~a~g 87 (116)
T COG1358 9 EMLEQKALSLLGKASRAGKLKKGTNEVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYV-YVGSKKELGKAVG 87 (116)
T ss_pred HHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEE-EeCCHHHHHHHhC
Confidence 4578999999999999999999999999999999999999999999 5899999999999999999 7999999999999
Q ss_pred CcccEEEEEEeCcCchHHHhcCC
Q 033750 87 KYFRVSCLSIIDPGDSDIIKSLP 109 (112)
Q Consensus 87 k~~~~~vvaI~d~g~a~~i~~~~ 109 (112)
++.+. ++++.|+||++.+.++.
T Consensus 88 ~~~~~-vv~i~~~~~~~~~~~l~ 109 (116)
T COG1358 88 KEVRK-VVAIVDKGFAKKLEDLV 109 (116)
T ss_pred CCcce-eEEEeehhhhhHHHHHH
Confidence 99765 79999999997776643
>PRK09190 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=99.94 E-value=2.9e-26 Score=171.00 Aligned_cols=96 Identities=17% Similarity=0.223 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHh------CCCcEEEecCCHHHHHh
Q 033750 10 THESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAML------AKVGVHHYNGNNVDLGT 83 (112)
Q Consensus 10 ~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~------~~Ip~i~~~~sk~eLG~ 83 (112)
+.++++++||+|+|||++++|+++|+++|++|+++|||+|+|+|++++++|.++|+. ++||++. .+|++|||.
T Consensus 95 l~~ril~lLGLArRAGklVsG~~~V~~alk~gk~~Lvi~A~DaS~~t~kKl~~~~~~~~~~~~~~Vp~v~-~~tk~eLg~ 173 (220)
T PRK09190 95 LARRALDALGLARKAGQVVSGFEKVDAALRSGEAAALIHASDGAADGKRKLDQARRALVHETGREIPVIG-LFTAAELGL 173 (220)
T ss_pred HHHHHHHHHHHHhhhCCEeecHHHHHHHHHcCCceEEEEeccCChhHHHHHHHHHHhhcccccCCccEEE-ecCHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999998 9999995 899999999
Q ss_pred hhCCcccEEEEEEeCcCchHHHhc
Q 033750 84 ACGKYFRVSCLSIIDPGDSDIIKS 107 (112)
Q Consensus 84 a~Gk~~~~~vvaI~d~g~a~~i~~ 107 (112)
|+|+++++ +++|+|.|||+.+.+
T Consensus 174 AlGr~~~~-~vav~d~gfA~~l~~ 196 (220)
T PRK09190 174 AFGRENVI-HAALLAGGAAERVVK 196 (220)
T ss_pred HhCCCcee-EEEEcChHHHHHHHH
Confidence 99999777 799999999998865
>PRK06683 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=99.93 E-value=8.9e-26 Score=145.54 Aligned_cols=79 Identities=16% Similarity=0.202 Sum_probs=75.3
Q ss_pred HHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEe
Q 033750 18 LALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSII 97 (112)
Q Consensus 18 Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~ 97 (112)
|..+.++|++++|.++|+++|++|++++||+|+|++++++++|.++|+.++||++. ++|++|||++||+++.+++++|+
T Consensus 3 ~~~~~~agk~v~G~~~v~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~-~~t~~eLG~A~G~~~~~a~~ai~ 81 (82)
T PRK06683 3 YQKVSNAENVVVGHKRTLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITK-VESVRKLGKVAGIQVGASAIGII 81 (82)
T ss_pred hHHHHhCCCEEEcHHHHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEE-ECCHHHHHHHhCCcccEEEEEEe
Confidence 55678999999999999999999999999999999999999999999999999995 78999999999999999999986
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Probab=99.93 E-value=8.9e-26 Score=148.07 Aligned_cols=97 Identities=47% Similarity=0.832 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcc
Q 033750 10 THESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYF 89 (112)
Q Consensus 10 ~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~ 89 (112)
..++|..-|.++.++|+++.|+++++++++.|++++||+|+|+++..+++++++++..+||++.|.+|..|||.+|||++
T Consensus 3 ~~~~v~~~L~~avkTGkvilG~k~tiK~lk~gkaKliiiAsN~P~~~k~~ieyYAkLs~ipV~~y~Gt~~eLG~~cgkpf 82 (100)
T COG1911 3 MGDDVEKELKLAVKTGKVILGSKRTIKSLKLGKAKLIIIASNCPKELKEDIEYYAKLSDIPVYVYEGTSVELGTVCGKPF 82 (100)
T ss_pred ccchHHHHHHHHHhcCCEEEehHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHcCCcEEEecCCceeHHhhhCCCc
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCcCchHHHh
Q 033750 90 RVSCLSIIDPGDSDIIK 106 (112)
Q Consensus 90 ~~~vvaI~d~g~a~~i~ 106 (112)
++++++|+|+|.++++.
T Consensus 83 ~v~~laIiD~G~S~Il~ 99 (100)
T COG1911 83 RVAALAIIDEGDSDILA 99 (100)
T ss_pred eEEEEEEecCchhhhhc
Confidence 99999999999998874
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Back Show alignment and domain information
Probab=99.93 E-value=1.3e-25 Score=144.65 Aligned_cols=77 Identities=22% Similarity=0.319 Sum_probs=73.4
Q ss_pred HHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEe
Q 033750 20 LVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSII 97 (112)
Q Consensus 20 la~kagklv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~ 97 (112)
...|+|+++.|.++|+++|++|++++||+|+|++|++++++.++|++++||++ +++|++|||+|||+++++++++|+
T Consensus 5 ~~~ragkl~~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~-~~~s~~eLG~a~G~~~~~a~~ai~ 81 (82)
T PRK13602 5 KVSQAKSIVIGTKQTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVS-KVDSMKKLGKACGIEVGAAAVAII 81 (82)
T ss_pred HHHhcCCEEEcHHHHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEE-EECCHHHHHHHHCCCcCEEEEEEe
Confidence 44699999999999999999999999999999999999999999999999999 488999999999999999999986
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Back Show alignment and domain information
Probab=99.91 E-value=3.9e-24 Score=137.90 Aligned_cols=73 Identities=15% Similarity=0.245 Sum_probs=70.0
Q ss_pred hCCceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEe
Q 033750 24 SGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSII 97 (112)
Q Consensus 24 agklv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~ 97 (112)
-|++++|.++|+++|++|++++||+|+|++++++++|.++|+.++||++ |++|++|||++||+++++++++|+
T Consensus 6 ~GKlv~G~~~vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~-~~~t~~eLG~A~G~~v~aa~~~~~ 78 (82)
T PRK13601 6 PSKRVVGAKQTLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIV-YIDTMKELGVMCGIDVGAAAAADI 78 (82)
T ss_pred CccEEEchHHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEE-EeCCHHHHHHHHCCccCeeeEEEe
Confidence 4899999999999999999999999999999999999999999999998 799999999999999999888875
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Back Show alignment and domain information
Probab=99.86 E-value=4.8e-21 Score=123.91 Aligned_cols=72 Identities=13% Similarity=0.266 Sum_probs=68.4
Q ss_pred CCceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEe
Q 033750 25 GKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSII 97 (112)
Q Consensus 25 gklv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~ 97 (112)
.+++.|.+|++++|++|++++||+|.|++|+...+++.+|++++|||+ |++|+.|||++||++++++++||+
T Consensus 12 ~~~vvG~kqt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v-~V~s~~~LGkAcgi~V~aa~aai~ 83 (84)
T PRK13600 12 QHFVVGLKETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVS-FFKSKHALGKHVGINVNATIVALI 83 (84)
T ss_pred cCceeeHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEE-EECCHHHHHHHhCCCcCeEEEEEe
Confidence 346999999999999999999999999999999999999999999999 799999999999999999888886
>KOG2988 consensus 60S ribosomal protein L30 [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Probab=99.78 E-value=1.5e-18 Score=116.09 Aligned_cols=111 Identities=72% Similarity=1.092 Sum_probs=103.1
Q ss_pred CccchhhhhhHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHH
Q 033750 1 MVTSKKTKKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVD 80 (112)
Q Consensus 1 ~~~~~~~~~~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~e 80 (112)
|+-.++.++..+.|+.-|-++.++|+.+.|++++.+.++.|+++|+++|+++++--+..|++++-....+|..|.+...|
T Consensus 1 ~~~~~k~~k~~e~ins~lll~mksgkY~lgyK~T~k~~r~gkakL~~is~n~p~lrks~ieyyamlak~~v~~~sg~n~~ 80 (112)
T KOG2988|consen 1 MVFFKKSKKSGEFINSSLLLVMKSGKYILGYKQTLKSLRQGKAKLIIISSNCPPLRKSEIEYYAMLAKTGVHHYSGNNVE 80 (112)
T ss_pred CcccccccccchhhhHHHHHHHhhcceeechHHHHHHHHhccceEEEeecCCCCcchhHHHHHHHHhcCceeeecCCcEe
Confidence 44456667788999999999999999999999999999999999999999999988999999998888999988999999
Q ss_pred HHhhhCCcccEEEEEEeCcCchHHHhcCCCC
Q 033750 81 LGTACGKYFRVSCLSIIDPGDSDIIKSLPGE 111 (112)
Q Consensus 81 LG~a~Gk~~~~~vvaI~d~g~a~~i~~~~~~ 111 (112)
||.+||+-+|++|++|+|+|.++++..+.++
T Consensus 81 lgt~~g~~fRv~v~~ivd~gds~~~~~l~e~ 111 (112)
T KOG2988|consen 81 LGTACGKTFRVSVLSIVDLGDSDIIAALSER 111 (112)
T ss_pred HHHHhcCeeEeeEEEEEeccchhhhhhcccc
Confidence 9999999999999999999999999988764
>PTZ00222 60S ribosomal protein L7a; Provisional
Back Show alignment and domain information
Probab=99.74 E-value=9.2e-18 Score=126.99 Aligned_cols=73 Identities=19% Similarity=0.349 Sum_probs=67.9
Q ss_pred ceecHHHHHHHHhcCCceEEEEeCCCCchhhh-hHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeCcCc
Q 033750 27 YTLGYKTVLRSLRSSKGKLILLSNNCPPLRKS-EIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGD 101 (112)
Q Consensus 27 lv~G~~~v~kai~~gka~lVilA~D~s~~~~~-~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~d~g~ 101 (112)
|++|.+.|.++|++++++|||||+|+||++.. +|..+|++++|||+ +++|+++||.++|+..++ +++|+|.|.
T Consensus 133 LvsG~n~VtkaIekkKAkLVIIA~DVsPie~vk~LpaLCrk~~VPY~-iVktKaeLG~AIGkKtra-vVAItD~g~ 206 (263)
T PTZ00222 133 VVTGLQEVTRAIEKKQARMVVIANNVDPVELVLWMPNLCRANKIPYA-IVKDMARLGDAIGRKTAT-CVAITDVNA 206 (263)
T ss_pred eccCHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCCEE-EECCHHHHHHHHCCCCCe-EEEEeeCCc
Confidence 88999999999999999999999999998774 69999999999999 599999999999998665 799999875
>PTZ00365 60S ribosomal protein L7Ae-like; Provisional
Back Show alignment and domain information
Probab=99.67 E-value=1.6e-16 Score=120.51 Aligned_cols=72 Identities=14% Similarity=0.151 Sum_probs=66.4
Q ss_pred ceecHHHHHHHHhcCCceEEEEeCCCCchhhhhH-HHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeCcC
Q 033750 27 YTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEI-EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPG 100 (112)
Q Consensus 27 lv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i-~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~d~g 100 (112)
+..|.+.|.++|++++++|||||+|+||++...+ +.+|+.++|||+ +++|+++||.++|+..++ ++||+|-.
T Consensus 133 vk~Gin~VtklIekkKAkLVIIA~DVsP~t~kk~LP~LC~k~~VPY~-iv~sK~eLG~AIGkktra-VVAItdV~ 205 (266)
T PTZ00365 133 LKYGLNHVTDLVEYKKAKLVVIAHDVDPIELVCFLPALCRKKEVPYC-IIKGKSRLGKLVHQKTAA-VVAIDNVR 205 (266)
T ss_pred HHhhhHHHHHHHHhCCccEEEEeCCCCHHHHHHHHHHHHhccCCCEE-EECCHHHHHHHhCCCCce-EEEecccC
Confidence 7799999999999999999999999999988775 799999999999 599999999999998665 79999764
>KOG3167 consensus Box H/ACA snoRNP component, involved in ribosomal RNA pseudouridinylation [RNA processing and modification]
Back Show alignment and domain information
Probab=99.66 E-value=2.1e-16 Score=109.86 Aligned_cols=99 Identities=18% Similarity=0.218 Sum_probs=86.9
Q ss_pred hhhhHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCc-hhhhhHHHHHHhCCCcEEEecCCHHHHHhhh
Q 033750 7 TKKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPP-LRKSEIEYYAMLAKVGVHHYNGNNVDLGTAC 85 (112)
Q Consensus 7 ~~~~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~-~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~ 85 (112)
.+++..+++.++..|.+.+.|..|.++|.+.+++|+-.++|+|.|++| +...+|+.+|++++|||+ |..|+++||.|.
T Consensus 40 ~kkl~kk~~KlvkKa~k~k~lrrGvKevqK~vrkGeKGl~VlAgd~sPiDvi~HlP~lCEd~~vPYv-y~psk~dlg~A~ 118 (153)
T KOG3167|consen 40 SKKLAKKVYKLVKKAAKQKGLRRGVKEVQKRVRKGEKGLCVLAGDTSPIDVITHLPALCEDRGVPYV-YTPSKEDLGAAG 118 (153)
T ss_pred cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcceEEEecCCccHHHHhccchhhhccCCCcc-ccccHHHHHHhc
Confidence 345889999999999999999999999999999999999999999999 899999999999999999 899999999999
Q ss_pred CCcccEEEEEEe-CcCchHHHh
Q 033750 86 GKYFRVSCLSII-DPGDSDIIK 106 (112)
Q Consensus 86 Gk~~~~~vvaI~-d~g~a~~i~ 106 (112)
|.+++.+++-|. +..+.+...
T Consensus 119 ~~krpt~~v~v~p~~eyke~yd 140 (153)
T KOG3167|consen 119 GTKRPTCCVFVKPGGEYKELYD 140 (153)
T ss_pred CCCCCceEEEEeeChhHHHHHH
Confidence 988777655554 443444433
>KOG3387 consensus 60S ribosomal protein 15
Back Show alignment and domain information
Probab=99.51 E-value=5.3e-14 Score=96.50 Aligned_cols=92 Identities=15% Similarity=0.166 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCc-hhhhhHHHHHHhCCCcEEEecCCHHHHHhhhC-
Q 033750 9 KTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPP-LRKSEIEYYAMLAKVGVHHYNGNNVDLGTACG- 86 (112)
Q Consensus 9 ~~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~-~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~G- 86 (112)
.+.++++++.+.|..-.++..|.+++.+.+.+|...+|++|.|+.| ....+++.+|+..||||+ |+.|+..||.+||
T Consensus 17 ~L~ekildl~Qqa~~~kql~kg~NEaTk~Lnrgi~~~Vv~aaD~kP~eIt~HLp~LcedknVp~v-~Vpsk~alG~~cg~ 95 (131)
T KOG3387|consen 17 NLTEKILDLKQQATGYKQLKKGANEATKTLNRGISEFVVMAADVKPLEITLHLPLLCEDKNVPYV-FVPSKQALGLACGE 95 (131)
T ss_pred hhHHHHHHHHHHHhhHHHHhcccchHhhhhccCceeEEEEEccCCHHHHHHHhHHHhhccCCceE-EeeccHHhhhhhhh
Confidence 4778999999999999999999999999999999999999999999 578999999999999999 7999999999999
Q ss_pred --CcccEEEEEEeCcCc
Q 033750 87 --KYFRVSCLSIIDPGD 101 (112)
Q Consensus 87 --k~~~~~vvaI~d~g~ 101 (112)
...++.+..|+..+-
T Consensus 96 ~~~~r~~~a~~i~~~~~ 112 (131)
T KOG3387|consen 96 LVVLRPVIACSITTNEA 112 (131)
T ss_pred HhhcCcceeEEEEeccc
Confidence 776665677765543
5kD/SNU13, NHP2/L7A family (includes ribonuclease P subunit p38), involved in splicing [RNA processing and modification; Translation, ribosomal structure and biogenesis]
>KOG3406 consensus 40S ribosomal protein S12 [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Probab=99.46 E-value=4.7e-13 Score=91.83 Aligned_cols=89 Identities=19% Similarity=0.352 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCc-hhhhhHHHHHHhCCCcEEEecCCHHHHHhhhC----
Q 033750 12 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPP-LRKSEIEYYAMLAKVGVHHYNGNNVDLGTACG---- 86 (112)
Q Consensus 12 ~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~-~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~G---- 86 (112)
.-+-..|..|+-.+.++.|..++.|++.++++.|+++|+|+++ +..+.+..+|.+++||+|. ++|..+||.|.|
T Consensus 20 ~AL~~Vlk~al~~dGlarGi~Ea~KaldkrqA~lcvLaencdep~yvKLVeALcaeh~iplik-V~d~k~LGew~Glcki 98 (134)
T KOG3406|consen 20 TALQEVLKTALVHDGLARGIHEAAKALDKRQAHLCVLAENCDEPMYVKLVEALCAEHQIPLIK-VGDAKELGEWAGLCKI 98 (134)
T ss_pred HHHHHHHHHHHHhchHHhHHHHHHHHHhhCceeEEEEeccCCchHHHHHHHHHHhhcCCCeEE-eccchhhhhhhceeee
Confidence 3444556667777999999999999999999999999999776 7899999999999999996 999999999997
Q ss_pred -------CcccEEEEEEeCcCc
Q 033750 87 -------KYFRVSCLSIIDPGD 101 (112)
Q Consensus 87 -------k~~~~~vvaI~d~g~ 101 (112)
|-..+++++|+|.|.
T Consensus 99 d~eGnarKvvGcs~vvVkd~ge 120 (134)
T KOG3406|consen 99 DSEGNARKVVGCSCVVVKDYGE 120 (134)
T ss_pred cCCCCeeEeecceEEEEeeccc
Confidence 233478899999985
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications
Back Show alignment and domain information
Probab=97.63 E-value=0.00023 Score=43.83 Aligned_cols=70 Identities=16% Similarity=0.102 Sum_probs=52.3
Q ss_pred ceecHHHHHHHHhcCC-ceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeC
Q 033750 27 YTLGYKTVLRSLRSSK-GKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIID 98 (112)
Q Consensus 27 lv~G~~~v~kai~~gk-a~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~d 98 (112)
++.|.+.|.++++.+. ..-|++..+........+...|...++|+.. -+++.|.+.++...+-.++|+..
T Consensus 1 lieG~~~V~eaL~~~~~i~~l~~~~~~~~~~~~~i~~~~~~~~i~v~~--v~~~~l~~ls~~~~hQGv~a~v~ 71 (76)
T PF08032_consen 1 LIEGRHAVEEALKSGPRIKKLFVTEEKADKRIKEILKLAKKKGIPVYE--VSKKVLDKLSDTENHQGVVAVVK 71 (76)
T ss_dssp EEESHHHHHHHHHCTGGEEEEEEETT---CCTHHHHHHHHHCT-EEEE--E-HHHHHHCTTTSS-TTEEEEEE
T ss_pred CEEEHHHHHHHHcCCCCccEEEEEcCccchhHHHHHHHHHHcCCeEEE--eCHHHHHHHcCCCCCCeEEEEEe
Confidence 5789999999999976 8888999984444457788899999999983 58899999997655555677654
While the biological role of many of these modifications is unknown, some have been shown to be necessary for cell growth or for resistance to antibiotics [, ]. One of the most common modifications is 2'O-ribose methylation catalysed by the RNA 2'O-ribose methyltransferases, a large enzyme family that transfer a methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the backbone ribose []. This entry represents a substrate-binding domain found in a variety of bacterial and mitochondrial RNA 2'-O ribose methyltransferases. These include the bacterial enzyme RlmB, which specifically methylates the conserved nucleotide guanosine 2251 in 23S RNA, and PET56, which specifically methylates the equivalent guanosine in mitochondrial 21S RNA [, ]. This domain forms a four-stranded mixed beta sheet similar to that found in other RNA binding enzymes []. It shows considerable conformational flexibility which is thought to be important for its ability to bind RNA.; GO: 0008168 methyltransferase activity; PDB: 1GZ0_D 1IPA_A.
>PF08228 RNase_P_pop3: RNase P subunit Pop3; InterPro: IPR013241 This family of fungal proteins form a subunit of RNase P, the ribonucleoprotein enzyme that cleaves the leader sequence of precursor tRNAs to generate mature tRNAs
Back Show alignment and domain information
Probab=96.84 E-value=0.0054 Score=43.98 Aligned_cols=84 Identities=20% Similarity=0.291 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHh-----CCceecHHHHHHHHhcCCc--eEEEEeCCCCc-hhhhhHHHHHHhCC--CcEEEec-CCHHHH
Q 033750 13 SINNRLALVMKS-----GKYTLGYKTVLRSLRSSKG--KLILLSNNCPP-LRKSEIEYYAMLAK--VGVHHYN-GNNVDL 81 (112)
Q Consensus 13 ~i~~~Lgla~ka-----gklv~G~~~v~kai~~gka--~lVilA~D~s~-~~~~~i~~~c~~~~--Ip~i~~~-~sk~eL 81 (112)
.+++.+.-.+++ -.+..|++++.+.+..... .+||++..-.| -...+|+.+|.-.+ |.++.++ ++.+.|
T Consensus 37 ~l~~~l~~~~~s~~~~~~~v~~GfNsi~~~Le~~~~~~~~vFVcr~D~ps~L~~h~P~Lva~as~~vrLV~Lpkgs~~rL 116 (158)
T PF08228_consen 37 KLLRPLKHLRESKPEWPWGVTVGFNSIVRYLECQASDNVYVFVCRSDQPSILTSHFPQLVATASKSVRLVQLPKGSEARL 116 (158)
T ss_pred HHHHHHHHHhhcCCCCCccEEEehHHHHHHHhcccCCCeEEEEECCCCcHHHHHHHHHHHHhccCcceEEeCChhHHHHH
Confidence 344444444442 4589999999999983322 35666654444 56799999998777 8888643 377899
Q ss_pred HhhhCCcccEEEEEEe
Q 033750 82 GTACGKYFRVSCLSII 97 (112)
Q Consensus 82 G~a~Gk~~~~~vvaI~ 97 (112)
+.++|.+ ++++++|.
T Consensus 117 s~aLgi~-r~g~l~v~ 131 (158)
T PF08228_consen 117 SEALGIP-RVGILAVR 131 (158)
T ss_pred HHHhCCC-CccEEEEe
Confidence 9999998 45689996
The structure of Pop3 has been assigned the L7Ae/L30e fold []. This RNA-binding fold is also present in human RNase P subunit Rpp38, raising the possibility that Pop3p and Rpp38 are functional homologues.
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre
Back Show alignment and domain information
Probab=96.73 E-value=0.0031 Score=42.49 Aligned_cols=85 Identities=21% Similarity=0.161 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCchh-------------------hhhHHHHHHhCCC
Q 033750 9 KTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLR-------------------KSEIEYYAMLAKV 69 (112)
Q Consensus 9 ~~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~~-------------------~~~i~~~c~~~~I 69 (112)
+..++++..|. ...|..+.|.++|.+|+..|.+..++++.|..... ...+...+++.+.
T Consensus 6 ~~ve~f~~~l~--k~~~~~~yG~~eV~~Al~~GaV~~LlI~d~l~~~~~~~r~~~~~~~~~~~~~~~i~~l~~~a~~~g~ 83 (113)
T PF03465_consen 6 KLVEEFFEELA--KDPGLAVYGIEEVKKALEMGAVETLLISDDLFRSRDVERCKCPECGGELEVVELIEELIELAEQSGA 83 (113)
T ss_dssp HHHHHHHHHHH--TTCSSEEESHHHHHHHHHTT-EEEEEEEHHHHTESCHHHHHSTTTHSEEEEEEHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHh--hCCCcEEECHHHHHHHHHhCCCcEEEEecccccccceeccccccccchhhhHHHHHHHHHHHHHcCC
Confidence 45566665554 24489999999999999999999999998875432 4667778888999
Q ss_pred cEEEecCCHHHHHhhhCCcccEEEEEEe
Q 033750 70 GVHHYNGNNVDLGTACGKYFRVSCLSII 97 (112)
Q Consensus 70 p~i~~~~sk~eLG~a~Gk~~~~~vvaI~ 97 (112)
.+. ++.+..+-|.-+=+.+.- ++||+
T Consensus 84 ~v~-iis~~~e~G~~L~~~~gG-IaaiL 109 (113)
T PF03465_consen 84 KVE-IISSEHEEGEQLLKGFGG-IAAIL 109 (113)
T ss_dssp EEE-EE-TTSHHHHHHHHCTTT-EEEEE
T ss_pred EEE-EEcCCCccHHHHHhcCCc-EEEEE
Confidence 888 577777777766112221 46665
The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination but this awaits experimental verification.; PDB: 3OBY_A 3E1Y_D 1DT9_A 2KTU_A 2KTV_A 3IR9_A 3E20_H 3OBW_A 3AGJ_F 3MCA_B ....
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms
Back Show alignment and domain information
Probab=96.36 E-value=0.02 Score=46.43 Aligned_cols=86 Identities=22% Similarity=0.197 Sum_probs=60.9
Q ss_pred hhhHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCC------------------------------c---
Q 033750 8 KKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCP------------------------------P--- 54 (112)
Q Consensus 8 ~~~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s------------------------------~--- 54 (112)
++..++++..| ++..|+.+.|.++|++|+..|.+.-+|+..|.. |
T Consensus 272 ~~lle~f~~el--~~d~g~avyG~~eV~~ALe~GAVetLLV~d~l~~~r~~~rc~~c~~~~~~~~~~~~~~~~~~~~~~~ 349 (403)
T TIGR03676 272 KKLMERFFKEL--VKDGGLAAYGEEEVRKALEMGAVDTLLISEDLRKIRVTFKCPNCGYEEEKTVKPEEGDKSEACPKCG 349 (403)
T ss_pred HHHHHHHHHHH--hcCCCcEEEcHHHHHHHHHhCCCcEEEEEccccceeEEEEcCCCCcceeeecccccccccccCcccC
Confidence 34555555444 346799999999999999999999999988762 1
Q ss_pred ---------hhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEe
Q 033750 55 ---------LRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSII 97 (112)
Q Consensus 55 ---------~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~ 97 (112)
+....+...++.++..+. ++.+.-+-|.-+-+.+.- ++||+
T Consensus 350 ~~~~~~~~~~~ve~L~e~a~~~Ga~V~-~iS~~~eeG~ql~~~fGG-IaAiL 399 (403)
T TIGR03676 350 SELEIVEEEDIIEELSELAEESGAKVE-IISTDTEEGEQLLKAFGG-IAAIL 399 (403)
T ss_pred cccccchhhhHHHHHHHHHHHcCCEEE-EECCCChhHHHHHHcCCc-EEEEE
Confidence 233455667778888888 577777777666444433 56665
Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.
>TIGR00111 pelota probable translation factor pelota
Back Show alignment and domain information
Probab=95.84 E-value=0.04 Score=43.82 Aligned_cols=85 Identities=11% Similarity=0.066 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCC-Cc-hhhhhHHHHHHhCCCcEEEecCCHHHHHhhhC
Q 033750 9 KTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNC-PP-LRKSEIEYYAMLAKVGVHHYNGNNVDLGTACG 86 (112)
Q Consensus 9 ~~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~-s~-~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~G 86 (112)
+..++++..| +...|+.++|.++|.+|+..|-+.-++++.+. .. .-..++...+++.+..++. ..+.-+-|.-+
T Consensus 262 ~~l~~f~~~l--~kd~~~~~YG~~eV~~Ale~GAVetLLIsD~l~~~r~~~~~l~~~v~~~gg~V~i-~Ss~~e~G~qL- 337 (351)
T TIGR00111 262 MVIDEFLEHL--AKDGDKAVYGEDEVVKAAEYGAIEYLLVTDKVLVQREEIEKLLDSVESMGGKVVI-LSTEHELGKQL- 337 (351)
T ss_pred HHHHHHHHHH--hcCCCeEEECHHHHHHHHHcCCceEEEEecchhhhHHHHHHHHHHHHHcCCEEEE-EcCCCccHHHH-
Confidence 3455555555 33458999999999999999999999999988 32 2234566677889999984 67777778777
Q ss_pred CcccEEEEEEeC
Q 033750 87 KYFRVSCLSIID 98 (112)
Q Consensus 87 k~~~~~vvaI~d 98 (112)
+... .++||+-
T Consensus 338 ~~lg-GiaAiLR 348 (351)
T TIGR00111 338 DSLG-GIAGILR 348 (351)
T ss_pred hhCC-CEEEEEe
Confidence 3333 3577763
This model describes the Drosophila protein Pelota, the budding yeast protein DOM34 which it can replace, and a set of closely related archaeal proteins. Members contain a proposed RNA binding motif. The meiotic defect in pelota mutants may be a complex result of a protein translation defect, as suggested in yeast by ribosomal protein RPS30A being a multicopy suppressor and by an altered polyribosome profile in DOM34 mutants rescued by RPS30A. This family is homologous to a family of peptide chain release factors. Pelota is proposed to act in protein translation.
>PRK04011 peptide chain release factor 1; Provisional
Back Show alignment and domain information
Probab=95.74 E-value=0.055 Score=43.98 Aligned_cols=84 Identities=18% Similarity=0.133 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCc-----------------------------------
Q 033750 10 THESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPP----------------------------------- 54 (112)
Q Consensus 10 ~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~----------------------------------- 54 (112)
..++++..| ++..|+.+.|.++|.+|++.|.+.-+|+..|...
T Consensus 282 lle~f~~~l--~~d~g~avyG~~~V~~Ale~GAVetLLV~d~l~~~r~~~~c~~c~~~~~~~~~~~~~~~~~~c~~~~~~ 359 (411)
T PRK04011 282 LMEEFFKEL--AKDGGLAVYGEEEVRKALEMGAVDTLLISEDLRKDRVTYKCPNCGYEEEKTVKRREELPEKTCPKCGSE 359 (411)
T ss_pred HHHHHHHHH--hcCCCcEEEcHHHHHHHHHcCCceEEEEeccccceeEEEEcCCCCcceeeecccccccccccCcccCcc
Confidence 344444333 4457999999999999999999999999865411
Q ss_pred -------hhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEe
Q 033750 55 -------LRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSII 97 (112)
Q Consensus 55 -------~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~ 97 (112)
+....+...+++++..+. ++.+.-+-|.-+=+.+.- ++||+
T Consensus 360 ~~~~~~~~~v~~l~e~a~~~g~~v~-iis~~~e~G~qL~~~fGG-IaAiL 407 (411)
T PRK04011 360 LEIVEEEDIIEELSELAEQSGTKVE-VISTDTEEGEQLLKAFGG-IAAIL 407 (411)
T ss_pred cccchhhhHHHHHHHHHHHcCCEEE-EECCCChhHHHHHHcCCC-EEEEE
Confidence 234556667788899888 577777777666333332 46665
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1
Back Show alignment and domain information
Probab=95.62 E-value=0.069 Score=43.39 Aligned_cols=84 Identities=13% Similarity=0.076 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCc-----------------------------------
Q 033750 10 THESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPP----------------------------------- 54 (112)
Q Consensus 10 ~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~----------------------------------- 54 (112)
..++++..| ++..|+.+.|.++|.+|++.|.+..+|+..|..-
T Consensus 278 lle~F~~ei--~~d~G~avyG~~eV~~ALe~GAVetLLV~d~l~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~c~~~~~~ 355 (409)
T TIGR00108 278 LVQRFLKEL--IQEDGLACYGEDEVLKALDLGAVETLIVSEDLEYIRVTYKCAECGEVIEKTVRELKDKKFAICPACGQE 355 (409)
T ss_pred HHHHHHHHH--hcCCCcEEeCHHHHHHHHHhCCCcEEEEeccccceeEEEEcCCCCceeecccccccccccccCcccCcc
Confidence 344444333 4457999999999999999999999999998621
Q ss_pred -------hhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEe
Q 033750 55 -------LRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSII 97 (112)
Q Consensus 55 -------~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~ 97 (112)
+....+...|++++..+. ++.+..+=|.-+=+.+.- ++||+
T Consensus 356 ~~~~~~~~~ve~L~e~a~~~Ga~V~-iiS~~~eeG~ql~~~fGG-IaAiL 403 (409)
T TIGR00108 356 MDVVEERDLIEWLSELAENFGAKLE-FISTESEEGAQLLTAFGG-IGAIL 403 (409)
T ss_pred ccchhhhhHHHHHHHHHHHcCCEEE-EECCCChhHHHHHHhCCC-EEEEE
Confidence 123446667888898888 577777766554222322 46665
Alternative names include eRF1, SUP45, omnipotent suppressor protein 1.
>PRK11181 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional
Back Show alignment and domain information
Probab=95.19 E-value=0.16 Score=38.31 Aligned_cols=72 Identities=10% Similarity=0.050 Sum_probs=54.0
Q ss_pred CceecHHHHHHHHhcC--CceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeCc
Q 033750 26 KYTLGYKTVLRSLRSS--KGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDP 99 (112)
Q Consensus 26 klv~G~~~v~kai~~g--ka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~d~ 99 (112)
.++.|.+.|.++++.+ ...-+++..+......+.+..+|...+||+. .-+.++|.+.++....-.++++..+
T Consensus 3 ~~i~G~~~v~eal~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~--~v~~~~l~~ls~~~~~qGv~a~~~~ 76 (244)
T PRK11181 3 EIIYGIHAVQALLERAPERFIEVFVLKGREDKRLLPLINELEAQGIVIQ--LANRQTLDEKAEGAVHQGIIARVKP 76 (244)
T ss_pred cEEEehHHHHHHHhCCCCceeEEEEECCCcchHHHHHHHHHHHcCCcEE--EeCHHHHhhhhcCCCCceEEEEEec
Confidence 4689999999999853 4556777776644334566678888899987 3689999999987656567888764
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal
Back Show alignment and domain information
Probab=94.52 E-value=0.12 Score=34.78 Aligned_cols=45 Identities=2% Similarity=-0.031 Sum_probs=37.3
Q ss_pred ecHHHHHHHHhcCCceEEEEeCCC-Cch----hhhhHHHHHHhCCCcEEE
Q 033750 29 LGYKTVLRSLRSSKGKLILLSNNC-PPL----RKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 29 ~G~~~v~kai~~gka~lVilA~D~-s~~----~~~~i~~~c~~~~Ip~i~ 73 (112)
-|..++.+.|++|++.+||-..|- +.+ --..|+..|-+++|||++
T Consensus 57 ~g~~~i~~~i~~g~i~~VInt~~~~~~~~~~~dg~~iRr~a~~~~Ip~~T 106 (115)
T cd01422 57 GGDQQIGALIAEGEIDAVIFFRDPLTAQPHEPDVKALLRLCDVYNIPLAT 106 (115)
T ss_pred CchhHHHHHHHcCceeEEEEcCCCCCCCcccccHHHHHHHHHHcCCCEEE
Confidence 577889999999999999999883 322 246788999999999996
The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
>TIGR00186 rRNA_methyl_3 rRNA methylase, putative, group 3
Back Show alignment and domain information
Probab=94.12 E-value=0.39 Score=36.00 Aligned_cols=70 Identities=14% Similarity=0.198 Sum_probs=48.5
Q ss_pred CceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeCc
Q 033750 26 KYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDP 99 (112)
Q Consensus 26 klv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~d~ 99 (112)
.++.|.+.|.++++++. ++++. ..........+..+|++.+||+.. -++++|-+.+|...+-.++++.++
T Consensus 2 ~~i~G~~~v~eal~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~l~~l~~~~~~qGv~a~~~~ 71 (237)
T TIGR00186 2 EYLYGKNAVLEALLNQQ-RVFIL-KGLESKRLKKLIQLAKKQGINIQL--VDRQKLDQLTKGGNHQGIAAKVKP 71 (237)
T ss_pred cEEEehHHHHHHHhCCC-EEEEE-ecCcchHHHHHHHHHHHcCCcEEE--eCHHHHHHHhCCCCCCeEEEEEec
Confidence 36799999999999883 33332 222112334577788888999984 489999999986555556777653
this is part of the trmH (spoU) family of rRNA methylases
>PRK05234 mgsA methylglyoxal synthase; Validated
Back Show alignment and domain information
Probab=94.00 E-value=0.13 Score=35.96 Aligned_cols=57 Identities=9% Similarity=-0.024 Sum_probs=42.9
Q ss_pred cHHHHHHHHhcCCceEEEEeCCC-Cchh----hhhHHHHHHhCCCcEEEecCCHHHHHhhhC
Q 033750 30 GYKTVLRSLRSSKGKLILLSNNC-PPLR----KSEIEYYAMLAKVGVHHYNGNNVDLGTACG 86 (112)
Q Consensus 30 G~~~v~kai~~gka~lVilA~D~-s~~~----~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~G 86 (112)
|..++.+.|++|++.+||-..|- +++. -..|+..|-.++||+++-..+-..+-+++.
T Consensus 63 g~~~i~~~I~~g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~l~tA~a~~~al~ 124 (142)
T PRK05234 63 GDQQIGALIAEGKIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATNRATADFLISSLL 124 (142)
T ss_pred CchhHHHHHHcCceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcCHHHHHHHHHHHh
Confidence 67889999999999999998752 3222 347889999999999974445556555554
>PRK10864 putative methyltransferase; Provisional
Back Show alignment and domain information
Probab=93.66 E-value=0.48 Score=37.89 Aligned_cols=78 Identities=13% Similarity=0.054 Sum_probs=55.2
Q ss_pred HHHHHHhCCceecHHHHHHHHhcC--CceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEE
Q 033750 18 LALVMKSGKYTLGYKTVLRSLRSS--KGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLS 95 (112)
Q Consensus 18 Lgla~kagklv~G~~~v~kai~~g--ka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vva 95 (112)
+...+....++.|.+.|.++++++ .+.-+++.....+.. +.+..++...++|+. .-+.++|.++++....-.+++
T Consensus 101 ~~~~~~~~~~I~G~~aV~ealk~~~~~i~~l~~~~~~~~~~-~~il~~~~~~~~~v~--~V~~~~l~kls~~~~hqGV~A 177 (346)
T PRK10864 101 LRRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRF-KEALRWMAANRKAYH--VVDEAELTKASGTEHHGGVCF 177 (346)
T ss_pred HhhccCCCcEEEEHHHHHHHHhCCCCceeEEEEecCccHHH-HHHHHHHHHcCCcEE--EeCHHHHHHHhCCCCCCeEEE
Confidence 344445567899999999999863 355666676665543 445556667789986 468999999998765555677
Q ss_pred EeC
Q 033750 96 IID 98 (112)
Q Consensus 96 I~d 98 (112)
+..
T Consensus 178 ~v~ 180 (346)
T PRK10864 178 LIK 180 (346)
T ss_pred EEe
Confidence 664
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine
Back Show alignment and domain information
Probab=92.36 E-value=0.23 Score=31.93 Aligned_cols=41 Identities=10% Similarity=0.085 Sum_probs=33.1
Q ss_pred HHHHHHhcCCceEEEEeCCCCchhh----hhHHHHHHhCCCcEEE
Q 033750 33 TVLRSLRSSKGKLILLSNNCPPLRK----SEIEYYAMLAKVGVHH 73 (112)
Q Consensus 33 ~v~kai~~gka~lVilA~D~s~~~~----~~i~~~c~~~~Ip~i~ 73 (112)
++.+.|++|++.+||.-.+...... ..+++.|.+++||+++
T Consensus 51 ~i~~~i~~~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~T 95 (95)
T PF02142_consen 51 QIMDLIKNGKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLFT 95 (95)
T ss_dssp HHHHHHHTTSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEEC
T ss_pred HHHHHHHcCCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCcC
Confidence 5999999999999999988877533 5678899999999973
The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function
Back Show alignment and domain information
Probab=91.79 E-value=0.57 Score=30.19 Aligned_cols=43 Identities=14% Similarity=0.124 Sum_probs=32.8
Q ss_pred CCceEEEEeCCCCc-hhhhhHHHHHHhCCCcEEEecC--CHHHHHhh
Q 033750 41 SKGKLILLSNNCPP-LRKSEIEYYAMLAKVGVHHYNG--NNVDLGTA 84 (112)
Q Consensus 41 gka~lVilA~D~s~-~~~~~i~~~c~~~~Ip~i~~~~--sk~eLG~a 84 (112)
+++-+||+-.|+-. +....+...|+.+++|++ |.. +-..|-++
T Consensus 47 ~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~-~~~~~~~~~l~~~ 92 (97)
T PF10087_consen 47 KKADLVIVFTDYVSHNAMWKVKKAAKKYGIPII-YSRSRGVSSLERA 92 (97)
T ss_pred CCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEE-EECCCCHHHHHHH
Confidence 55788888888765 788999999999999999 554 33444333
>COG0566 SpoU rRNA methylases [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Probab=91.44 E-value=2.2 Score=32.60 Aligned_cols=73 Identities=19% Similarity=0.099 Sum_probs=58.0
Q ss_pred CceecHHHHHHHHhcC-CceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeCcCc
Q 033750 26 KYTLGYKTVLRSLRSS-KGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGD 101 (112)
Q Consensus 26 klv~G~~~v~kai~~g-ka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~d~g~ 101 (112)
-++.|.+.|..+++.+ .+.-+++..+.. ....++...+...++|+. .-+++.|....+....-.++++.++-.
T Consensus 22 ~~~~G~~~v~~al~~~~~i~~i~~~~~~~-~~~~~~~~~~~~~~~~~~--~v~~~~l~~~~~~~~hqGi~a~~~~~~ 95 (260)
T COG0566 22 FLIEGEHAVLEALASGPKIVRILVTEGRL-PRFEELLALAAAKGIPVY--VVSEAILDKLSGTENHQGIVAVVKKRR 95 (260)
T ss_pred EEEeeHHHHHHHHhcCCCceEEEEecccc-hhHHHHHHHHHhcCCeEE--EECHHHHHHHhCCCCCCeEEEEEeccc
Confidence 5999999999999999 677788888887 445556667778899997 478999999988665556677776554
>smart00851 MGS MGS-like domain
Back Show alignment and domain information
Probab=91.19 E-value=0.51 Score=29.88 Aligned_cols=48 Identities=10% Similarity=-0.002 Sum_probs=36.4
Q ss_pred CCceecHHHHHHHHhcCCceEEEEeCCC-Cch---hhhhHHHHHHhCCCcEE
Q 033750 25 GKYTLGYKTVLRSLRSSKGKLILLSNNC-PPL---RKSEIEYYAMLAKVGVH 72 (112)
Q Consensus 25 gklv~G~~~v~kai~~gka~lVilA~D~-s~~---~~~~i~~~c~~~~Ip~i 72 (112)
.++--|...+.+.++.|++.+||-..+- ... --..++..|.+++||++
T Consensus 38 ~ki~~~~~~i~~~i~~g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 38 PKVHGGILAILDLIKNGEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred CCCCCCCHHHHHHhcCCCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 3444456669999999999999997763 221 23578899999999997
This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
>cd00532 MGS-like MGS-like domain
Back Show alignment and domain information
Probab=90.70 E-value=0.66 Score=30.70 Aligned_cols=44 Identities=18% Similarity=0.098 Sum_probs=35.3
Q ss_pred cHHHHHHHHhc-CCceEEEEeCCCCc-----hhhhhHHHHHHhCCCcEEE
Q 033750 30 GYKTVLRSLRS-SKGKLILLSNNCPP-----LRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 30 G~~~v~kai~~-gka~lVilA~D~s~-----~~~~~i~~~c~~~~Ip~i~ 73 (112)
|..++.+.|++ |++.+||-..|-.. ..-..++..|-.++||+++
T Consensus 55 g~~~i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 55 GEPTVDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred CCcHHHHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 67789999999 99999999776221 1245788899999999996
This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Back Show alignment and domain information
Probab=88.60 E-value=1.2 Score=34.14 Aligned_cols=72 Identities=6% Similarity=-0.015 Sum_probs=58.2
Q ss_pred ceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCC-CcEEEecCCHHHHHhhhCCcccEEEEEEeCcCc
Q 033750 27 YTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAK-VGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGD 101 (112)
Q Consensus 27 lv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~-Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~d~g~ 101 (112)
+++---|+..+--+|--.++++++=.+....+.+..+|+..+ -|+++ +.+.+|++++++.. +-++||.+.+.
T Consensus 145 Fivd~~QI~~aR~~GADaVLLIvamLs~~~lk~l~k~~K~L~me~LVE-Vn~~eEm~raleiG--akvvGvNNRnL 217 (289)
T KOG4201|consen 145 FIVDPYQIYEARLKGADAVLLIVAMLSDLLLKELYKISKDLGMEPLVE-VNDEEEMQRALEIG--AKVVGVNNRNL 217 (289)
T ss_pred HccCHHHHHHHHhcCCceeehHHHHcChHHHHHHHHHHHHcCCcceee-eccHHHHHHHHHhC--cEEEeecCCcc
Confidence 445556777777788877788888888888888999999887 58997 99999999999995 44699988763
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP)
Back Show alignment and domain information
Probab=88.30 E-value=1.5 Score=28.69 Aligned_cols=45 Identities=13% Similarity=0.100 Sum_probs=34.9
Q ss_pred ecHHHHHHHHhcCCceEEEEeCCCCch--hhhhHHHHHHhCCCcEEE
Q 033750 29 LGYKTVLRSLRSSKGKLILLSNNCPPL--RKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 29 ~G~~~v~kai~~gka~lVilA~D~s~~--~~~~i~~~c~~~~Ip~i~ 73 (112)
.|..++.+.+++|++-+||-..+.... .-..++..|-+++||+++
T Consensus 54 ~~~~~i~~~i~~~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 54 EGRPNIVDLIKNGEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred CCchhHHHHHHcCCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 366889999999999999987653221 235688899999999995
CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
>PF15608 PELOTA_1: PELOTA RNA binding domain
Back Show alignment and domain information
Probab=86.82 E-value=2.8 Score=27.94 Aligned_cols=51 Identities=14% Similarity=-0.018 Sum_probs=41.9
Q ss_pred CCceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCC
Q 033750 25 GKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGN 77 (112)
Q Consensus 25 gklv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~s 77 (112)
..+.-|.-++.+.+-++--..|++-...+ .-.++|..+|++.|||+.. .++
T Consensus 38 N~IKPGIgEaTRvLLRRvP~~vLVr~~~~-pd~~Hl~~LA~ekgVpVe~-~~d 88 (100)
T PF15608_consen 38 NLIKPGIGEATRVLLRRVPWKVLVRDPDD-PDLAHLLLLAEEKGVPVEV-YPD 88 (100)
T ss_pred ccccCChhHHHHHHHhcCCCEEEECCCCC-ccHHHHHHHHHHcCCcEEE-eCC
Confidence 56888999999999988888777775555 4667899999999999996 444
>KOG3166 consensus 60S ribosomal protein L7A [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Probab=86.24 E-value=0.34 Score=36.23 Aligned_cols=41 Identities=15% Similarity=0.157 Sum_probs=36.8
Q ss_pred ceecHHHHHHHHhcCCceEEEEeCCCCc-hhhhhHHHHHHhC
Q 033750 27 YTLGYKTVLRSLRSSKGKLILLSNNCPP-LRKSEIEYYAMLA 67 (112)
Q Consensus 27 lv~G~~~v~kai~~gka~lVilA~D~s~-~~~~~i~~~c~~~ 67 (112)
+..|.+.|..-+++.+|.||++|.|.+| ...--++.+|...
T Consensus 110 ~~~gvnTVttLVenKKAQLVV~ahDvDPIELVvFLPaLC~km 151 (209)
T KOG3166|consen 110 LRAGVNTVTTLVENKKAQLVVTAHDVDPIELVVFLPALCRKM 151 (209)
T ss_pred cccCcceEeehhhccccceeEEecccCchhheeecHHhhhhh
Confidence 6789999999999999999999999999 6677788899876
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Back Show alignment and domain information
Probab=85.43 E-value=6.4 Score=29.38 Aligned_cols=69 Identities=17% Similarity=0.098 Sum_probs=54.2
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCchh----hhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeCcCchH
Q 033750 31 YKTVLRSLRSSKGKLILLSNNCPPLR----KSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSD 103 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s~~~----~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~d~g~a~ 103 (112)
.+.+.++++.|-..+.+-..|.+... .+++..+|..|++|++ ..+..+|....|-+ .+| ++=-|-..++
T Consensus 24 ~~~ve~al~~Gv~~vQlR~K~~~~~~~~~~a~~~~~lc~~~~v~li--INd~~dlA~~~~Ad-GVH-lGq~D~~~~~ 96 (211)
T COG0352 24 LEWVEAALKGGVTAVQLREKDLSDEEYLALAEKLRALCQKYGVPLI--INDRVDLALAVGAD-GVH-LGQDDMPLAE 96 (211)
T ss_pred HHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHHHHHHHhCCeEE--ecCcHHHHHhCCCC-EEE-cCCcccchHH
Confidence 68899999999888888899998854 3678899999999998 58889999988866 563 6555444433
>PF07997 DUF1694: Protein of unknown function (DUF1694); InterPro: IPR012543 This family contains many hypothetical proteins
Back Show alignment and domain information
Probab=85.02 E-value=2.6 Score=28.72 Aligned_cols=47 Identities=9% Similarity=-0.065 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHH
Q 033750 32 KTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNV 79 (112)
Q Consensus 32 ~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~ 79 (112)
.++.+.+++.....++|.++.+.+....+..+|+++++|+-. +.+..
T Consensus 52 ~~~~~~l~~~~~~~l~ing~l~~~~~~~YiklA~~~~~~fTi-v~~~~ 98 (120)
T PF07997_consen 52 PEFEQALKDYPNYKLKINGNLDYSFQSKYIKLANKHGIPFTI-VNDPE 98 (120)
T ss_dssp HHHHHHHHC-SSEEEEEETTS-HHHHHHHHHHHHHTT--EEE-E---S
T ss_pred HHHHHHHhhCCCeEEEEcCCCCHHHHHHHHHHHHHcCCCEEE-eCCCC
Confidence 678888999999999999999999999999999999999984 65544
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Back Show alignment and domain information
Probab=83.03 E-value=2.7 Score=34.18 Aligned_cols=51 Identities=20% Similarity=0.385 Sum_probs=44.2
Q ss_pred HhCCceecHHHHHHHHhcCCceEEEEeCCCCchhh-------hhHHHHHHhCCCcEEE
Q 033750 23 KSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRK-------SEIEYYAMLAKVGVHH 73 (112)
Q Consensus 23 kagklv~G~~~v~kai~~gka~lVilA~D~s~~~~-------~~i~~~c~~~~Ip~i~ 73 (112)
..|+...-+++..+++..+++++.|+.+=-.|-.+ .++.++|..|||.+|.
T Consensus 139 ~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VIS 196 (388)
T COG1168 139 DDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVIS 196 (388)
T ss_pred cCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEe
Confidence 56888889999999999999999999988777433 6778899999999985
>COG1503 eRF1 Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Probab=83.03 E-value=4.7 Score=33.12 Aligned_cols=86 Identities=22% Similarity=0.166 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCch---------------------------------
Q 033750 9 KTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPL--------------------------------- 55 (112)
Q Consensus 9 ~~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~--------------------------------- 55 (112)
+..+.++.-+. ..+|..+.|..+|.+++.-|.+..++++.|-...
T Consensus 280 ~l~e~f~~e~~--~~~Gla~yG~~~vr~aL~~gaVd~llv~Edl~~~r~~~~c~~~~~e~~~t~~~~~~~~~~~~~~~~e 357 (411)
T COG1503 280 KLMEEFFKELA--KDSGLAVYGEEEVREALEMGAVDTLLVSEDLEKERVTYKCPTCGYENLKSKREFEQKRFRCPECGSE 357 (411)
T ss_pred hHHHHHHHHhc--cCcceeecchHHHHHHHHhcccceEEeeccccccceeecCCCcchhhhhcccccccccccCcccccc
Confidence 34455544432 3468788999999999999999999999998732
Q ss_pred --------hhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeC
Q 033750 56 --------RKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIID 98 (112)
Q Consensus 56 --------~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~d 98 (112)
....+...|+..+..+. +..+..+-|..+=+.+.. +.||++
T Consensus 358 ~~~v~~~d~vd~l~e~a~~~Ga~ve-~is~~~~eg~q~~~afgG-i~AiLR 406 (411)
T COG1503 358 MEEVEVSDLVDELAELAEESGAKVE-IISDDTDEGAQLLKAFGG-LAAILR 406 (411)
T ss_pred ccchhhhhHHHHHHHHHHhcCCeEE-EecCchHHHHHHHHcccc-hheeee
Confidence 23455566777777777 466766777776555554 456654
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins
Back Show alignment and domain information
Probab=82.05 E-value=2.6 Score=28.54 Aligned_cols=35 Identities=9% Similarity=0.016 Sum_probs=29.4
Q ss_pred CCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCC
Q 033750 41 SKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGN 77 (112)
Q Consensus 41 gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~s 77 (112)
....+||.+.|. ...+..+.++|.++++|++. .++
T Consensus 88 ~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~-~~~ 122 (143)
T cd01483 88 DGVDLVIDAIDN-IAVRRALNRACKELGIPVID-AGG 122 (143)
T ss_pred cCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEE-EcC
Confidence 357789989887 66788899999999999995 665
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 112
d1t0kb_ 97
d.79.3.1 (B:) Eukaryotic ribosomal protein L30 (L3
2e-41 d2bo1a1 100
d.79.3.1 (A:1-100) Eukaryotic ribosomal protein L3
1e-37 d1w3ex1 98
d.79.3.1 (X:1-98) Eukaryotic ribosomal protein L30
2e-36 d2fc3a1 124
d.79.3.1 (A:4-127) Ribosomal protein L7ae {Aeropyr
6e-28 d1vqof1 119
d.79.3.1 (F:1-119) Ribosomal protein L7ae {Archaeo
7e-22 d1rlga_ 113
d.79.3.1 (A:) Ribosomal protein L7ae {Archaeon Arc
8e-21 d1xbia1 115
d.79.3.1 (A:2-116) Ribosomal protein L7ae {Archaeo
5e-20 d2aifa1 115
d.79.3.1 (A:16-130) Ribosomal protein L7ae {Crypto
1e-19 d2ozba1 125
d.79.3.1 (A:4-128) Spliceosomal 15.5kd protein {Hu
7e-16 d2alea1 126
d.79.3.1 (A:1-126) Small nuclear ribonucleoprotein
3e-11
>d1t0kb_ d.79.3.1 (B:) Eukaryotic ribosomal protein L30 (L30e) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 97
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Eukaryotic ribosomal protein L30 (L30e)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 130 bits (328), Expect = 2e-41
Identities = 58/96 (60%), Positives = 77/96 (80%)
Query: 13 SINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVH 72
SIN +LALV+KSGKYTLGYK+ ++SLR K KLI+++ N P LRKSE+EYYAML+K V+
Sbjct: 1 SINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSKTKVY 60
Query: 73 HYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSL 108
++ G N +LGTA GK FRV +SI++ GDSDI+ +L
Sbjct: 61 YFQGGNNELGTAVGKLFRVGVVSILEAGDSDILTTL 96
>d2bo1a1 d.79.3.1 (A:1-100) Eukaryotic ribosomal protein L30 (L30e) {Archaeon Thermococcus celer [TaxId: 2264]} Length = 100
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Eukaryotic ribosomal protein L30 (L30e)
species: Archaeon Thermococcus celer [TaxId: 2264]
Score = 120 bits (303), Expect = 1e-37
Identities = 44/98 (44%), Positives = 62/98 (63%)
Query: 14 INNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73
I L V+ SGKYTLGY+ ++SL+ KLI+++ N P RK ++EYYA L+ V+
Sbjct: 3 IAFELRKVIDSGKYTLGYRKTVQSLKMGGSKLIIIARNTRPDRKEDLEYYARLSGTPVYE 62
Query: 74 YNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGE 111
+ G NV+LGTA GK VS +SI+D G+S I+ E
Sbjct: 63 FEGTNVELGTAVGKPHTVSVVSILDAGESRILALGGKE 100
>d1w3ex1 d.79.3.1 (X:1-98) Eukaryotic ribosomal protein L30 (L30e) {Archaeon Thermococcus celer [TaxId: 2264]} Length = 98
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Eukaryotic ribosomal protein L30 (L30e)
species: Archaeon Thermococcus celer [TaxId: 2264]
Score = 117 bits (295), Expect = 2e-36
Identities = 31/93 (33%), Positives = 53/93 (56%)
Query: 14 INNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73
L +GK +G + ++ + KLI+++ N P K +IEYYA L+ + V+
Sbjct: 3 FAFELRKAQDTGKIVMGARKSIQYAKMGGAKLIIVARNARPDIKEDIEYYARLSGIAVYE 62
Query: 74 YNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIK 106
+ G +V+LGT G+ VS L+++DPG+S I+
Sbjct: 63 FEGTSVELGTLLGRPHTVSALAVVDPGESRILA 95
>d2fc3a1 d.79.3.1 (A:4-127) Ribosomal protein L7ae {Aeropyrum pernix [TaxId: 56636]} Length = 124
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Ribosomal protein L7ae
species: Aeropyrum pernix [TaxId: 56636]
Score = 96.8 bits (241), Expect = 6e-28
Identities = 18/104 (17%), Positives = 41/104 (39%)
Query: 2 VTSKKTKKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIE 61
V + + E + ++G+ G +++ KL++++ + P
Sbjct: 4 VRFEVPEDLAEKAYEAVKRARETGRIKKGTNETTKAVERGLAKLVVIAEDVDPPEIVMHL 63
Query: 62 YYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDII 105
K + Y + LG A G + ++II+PGD++ +
Sbjct: 64 PLLCDEKKIPYVYVPSKKRLGEAAGIEVAAASVAIIEPGDAETL 107
>d1vqof1 d.79.3.1 (F:1-119) Ribosomal protein L7ae {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 119
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Ribosomal protein L7ae
species: Archaeon Haloarcula marismortui [TaxId: 2238]
Score = 81.1 bits (200), Expect = 7e-22
Identities = 15/96 (15%), Positives = 31/96 (32%)
Query: 8 KKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLA 67
+ L + +G G +S+ +L+ ++ + P
Sbjct: 10 ADLEDDALEALEVARDTGAVKKGTNETTKSIERGSAELVFVAEDVQPEEIVMHIPELADE 69
Query: 68 KVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSD 103
K + DLG A G + ++ D G++D
Sbjct: 70 KGVPFIFVEQQDDLGHAAGLEVGSAAAAVTDAGEAD 105
>d1rlga_ d.79.3.1 (A:) Ribosomal protein L7ae {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 113
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Ribosomal protein L7ae
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 78.3 bits (193), Expect = 8e-21
Identities = 19/92 (20%), Positives = 34/92 (36%)
Query: 12 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGV 71
+ L V +SGK G +++ KL+ ++ + P K
Sbjct: 7 NEALSLLEKVRESGKVKKGTNETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVP 66
Query: 72 HHYNGNNVDLGTACGKYFRVSCLSIIDPGDSD 103
+ Y + DLG A G + +II+ G+
Sbjct: 67 YIYVKSKNDLGRAVGIEVPCASAAIINEGELR 98
>d1xbia1 d.79.3.1 (A:2-116) Ribosomal protein L7ae {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 115
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Ribosomal protein L7ae
species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 76.0 bits (187), Expect = 5e-20
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 12 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGV 71
E L V K+ K G V +++ KL++++ + P + + G+
Sbjct: 11 EIQKELLDAVAKAQKIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVA-HLPYLCEEKGI 69
Query: 72 HH-YNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSL 108
+ Y + DLG A G S ++II+ GD++ +K L
Sbjct: 70 PYAYVASKQDLGKAAGLEVAASSVAIINEGDAEELKVL 107
>d2aifa1 d.79.3.1 (A:16-130) Ribosomal protein L7ae {Cryptosporidium parvum [TaxId: 5807]} Length = 115
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Ribosomal protein L7ae
species: Cryptosporidium parvum [TaxId: 5807]
Score = 74.9 bits (184), Expect = 1e-19
Identities = 18/101 (17%), Positives = 34/101 (33%)
Query: 8 KKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLA 67
+ I N + + G ++L +++LL+ + PL
Sbjct: 6 PDLNNKIINLVQQACNYKQLRKGANEATKALNRGIAEIVLLAADAEPLEILLHLPLVCED 65
Query: 68 KVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSL 108
K + + + V LG ACG V +I S + +
Sbjct: 66 KNTPYVFVRSKVALGRACGVSRPVIAAAITSKDGSSLSSQI 106
>d2ozba1 d.79.3.1 (A:4-128) Spliceosomal 15.5kd protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125
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class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Spliceosomal 15.5kd protein
species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.7 bits (160), Expect = 7e-16
Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 4/104 (3%)
Query: 5 KKTKKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYA 64
TKK + + + G ++L + I+++ + PL
Sbjct: 14 HLTKKLLDLVQ----QSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLL 69
Query: 65 MLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSL 108
K + + + LG ACG V S+ S + + +
Sbjct: 70 CEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQI 113
>d2alea1 d.79.3.1 (A:1-126) Small nuclear ribonucleoprotein-associated protein 1, Snu13p {Saccharomyces cerevisiae [TaxId: 4932]} Length = 126
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class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Small nuclear ribonucleoprotein-associated protein 1, Snu13p
species: Saccharomyces cerevisiae [TaxId: 4932]
Score = 54.1 bits (130), Expect = 3e-11
Identities = 18/101 (17%), Positives = 34/101 (33%)
Query: 8 KKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLA 67
+ I + + + G ++L + I+++ +C P+
Sbjct: 14 AALTQQILDVVQQAANLRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCED 73
Query: 68 KVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSL 108
K + + + V LG ACG V SI S I +
Sbjct: 74 KNVPYVFVPSRVALGRACGVSRPVIAASITTNDASAIKTQI 114
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 112
d1t0kb_ 97
Eukaryotic ribosomal protein L30 (L30e) {Baker's y
99.97 d2bo1a1 100
Eukaryotic ribosomal protein L30 (L30e) {Archaeon
99.97 d1w3ex1 98
Eukaryotic ribosomal protein L30 (L30e) {Archaeon
99.97 d1vqof1 119
Ribosomal protein L7ae {Archaeon Haloarcula marism
99.96 d2fc3a1 124
Ribosomal protein L7ae {Aeropyrum pernix [TaxId: 5
99.95 d1rlga_ 113
Ribosomal protein L7ae {Archaeon Archaeoglobus ful
99.95 d2aifa1 115
Ribosomal protein L7ae {Cryptosporidium parvum [Ta
99.94 d1xbia1 115
Ribosomal protein L7ae {Archaeon Methanococcus jan
99.94 d2alea1 126
Small nuclear ribonucleoprotein-associated protein
99.92 d2ozba1 125
Spliceosomal 15.5kd protein {Human (Homo sapiens)
99.92 d1gz0a2 76
RlmB, N-terminal domain {Escherichia coli [TaxId:
98.09 d2vgna3 104
Dom34 {Saccharomyces cerevisiae [TaxId: 4932]}
96.7 d2qi2a3 95
Cell division protein pelota {Thermoplasma acidoph
96.61 d1dt9a2 146
C-terminal domain of eukaryotic peptide chain rele
96.6 d1x52a1 111
Cell division protein pelota {Human (Homo sapiens)
96.55 d1wo8a1 126
Methylglyoxal synthase, MgsA {Thermus thermophilus
93.93 d1b93a_ 148
Methylglyoxal synthase, MgsA {Escherichia coli [Ta
93.45 d1vmda_ 156
Methylglyoxal synthase, MgsA {Thermotoga maritima
92.42 d1ipaa2 105
RrmA (RrmH), N-terminal domain {Thermus thermophil
90.75 d1a9xa2 138
Carbamoyl phosphate synthetase, large subunit allo
85.41 d1ko7a1 129
HPr kinase/phoshatase HprK N-terminal domain {Stap
83.87 d1a53a_ 247
Indole-3-glycerophosphate synthase, IPGS {Archaeon
83.11 d1i4na_ 251
Indole-3-glycerophosphate synthase, IPGS {Thermoto
81.08
>d1t0kb_ d.79.3.1 (B:) Eukaryotic ribosomal protein L30 (L30e) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
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class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Eukaryotic ribosomal protein L30 (L30e)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.9e-32 Score=178.67 Aligned_cols=96 Identities=60% Similarity=0.970 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEE
Q 033750 13 SINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVS 92 (112)
Q Consensus 13 ~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~ 92 (112)
.|.++|++|+|+|+++.|+++|.+++++|++++||+|+|++|++++++..+|++++||++.|.+|++|||.+||++++++
T Consensus 1 ~I~~~L~la~Kagklv~G~~~v~k~i~~gkaklVilA~D~~~~~~~~i~~~~~~~~vp~~~~~~t~~eLG~a~Gk~~~vs 80 (97)
T d1t0kb_ 1 SINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVG 80 (97)
T ss_dssp CHHHHHHHHHHSSCEEESHHHHHHHHHHTCCSEEEECTTCCHHHHHHHHHHHHHHTCEEEECSSCHHHHHHHTTCSSCCS
T ss_pred CHHHHHHHHHHhCCeeEcHHHHHHHHHcCCCcEEEEeCCCCHHHHHHHHHHHHhcCCceEEEcCCHHHHHHHhCCCCCEE
Confidence 37899999999999999999999999999999999999999999999999999999998756789999999999999888
Q ss_pred EEEEeCcCchHHHhcC
Q 033750 93 CLSIIDPGDSDIIKSL 108 (112)
Q Consensus 93 vvaI~d~g~a~~i~~~ 108 (112)
+++|+|+|+|++|..+
T Consensus 81 ~v~I~d~G~s~~~~~l 96 (97)
T d1t0kb_ 81 VVSILEAGDSDILTTL 96 (97)
T ss_dssp EEEECCCSSCCTTTTT
T ss_pred EEEEeccchHHHHHhc
Confidence 9999999999988765
>d2bo1a1 d.79.3.1 (A:1-100) Eukaryotic ribosomal protein L30 (L30e) {Archaeon Thermococcus celer [TaxId: 2264]}
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class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Eukaryotic ribosomal protein L30 (L30e)
species: Archaeon Thermococcus celer [TaxId: 2264]
Probab=99.97 E-value=1.1e-31 Score=175.92 Aligned_cols=98 Identities=44% Similarity=0.679 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEE
Q 033750 13 SINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVS 92 (112)
Q Consensus 13 ~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~ 92 (112)
+|...|++|+|+|+++.|+++|.++|++|++++||+|+|++|++++++.++|+.++||++.|.+|++|||.+||++++++
T Consensus 2 d~~~~L~~a~kaGklv~G~~~v~kai~~gkaklVilA~D~~~~~~~~i~~~c~~~~vp~~~~~~s~~eLG~a~Gk~~~vs 81 (100)
T d2bo1a1 2 DIAFELRKVIDSGKYTLGYRKTVQSLKMGGSKLIIIARNTRPDRKEDLEYYARLSGTPVYEFEGTNVELGTAVGKPHTVS 81 (100)
T ss_dssp CHHHHHHHHHHHSEEEESHHHHHHHHHTTCCSEEEEETTSCHHHHHHHHHHHHHHTCCEEEESSCHHHHHHHTTCSSCCS
T ss_pred CHHHHHHHHHHhCCEEEcHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHhcCCCeEEEcCcHHHHHHHhCCcCcEE
Confidence 57889999999999999999999999999999999999999999999999999999998767899999999999999888
Q ss_pred EEEEeCcCchHHHhcCCC
Q 033750 93 CLSIIDPGDSDIIKSLPG 110 (112)
Q Consensus 93 vvaI~d~g~a~~i~~~~~ 110 (112)
+++|+|+|||++|....+
T Consensus 82 ~vaI~d~G~s~il~~~~~ 99 (100)
T d2bo1a1 82 VVSILDAGESRILALGGK 99 (100)
T ss_dssp EEEEEECTTCCGGGGGCC
T ss_pred EEEEecccHHHHHHhhcC
Confidence 999999999986655444
>d1w3ex1 d.79.3.1 (X:1-98) Eukaryotic ribosomal protein L30 (L30e) {Archaeon Thermococcus celer [TaxId: 2264]}
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class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Eukaryotic ribosomal protein L30 (L30e)
species: Archaeon Thermococcus celer [TaxId: 2264]
Probab=99.97 E-value=7.1e-32 Score=176.40 Aligned_cols=95 Identities=33% Similarity=0.576 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEE
Q 033750 13 SINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVS 92 (112)
Q Consensus 13 ~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~ 92 (112)
++...|++|+|+|+++.|+++|+++|++|++++||+|+|++|++++++.++|+.++||++.|.+|++|||++||++++++
T Consensus 2 d~~~~L~~a~kaGklv~G~~~v~kal~~gkaklVilA~D~~~~~~~~i~~~c~~~~Ip~~~~~~t~~eLG~a~Gk~~~vs 81 (98)
T d1w3ex1 2 DFAFELRKAQDTGKIVMGARKSIQYAKMGGAKLIIVARNARPDIKEDIEYYARLSGIAVYEFEGTSVELGTLLGRPHTVS 81 (98)
T ss_dssp CHHHHHHHHHHHSEEEESHHHHHHHHHHTCCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEESSCHHHHHHHTTCSSCCC
T ss_pred CHHHHHHHHHHhCCEEEcHHHHHHHHHcCCccEEEEECCCCHHHHHHHHHHHHhcCCCeEEECCCHHHHHHHhCCCCCEE
Confidence 57788999999999999999999999999999999999999999999999999999999867799999999999999988
Q ss_pred EEEEeCcCchHHHhc
Q 033750 93 CLSIIDPGDSDIIKS 107 (112)
Q Consensus 93 vvaI~d~g~a~~i~~ 107 (112)
+++|+|+|+|+.+..
T Consensus 82 ~vaI~d~G~s~i~~l 96 (98)
T d1w3ex1 82 ALAVVDPGESRILAL 96 (98)
T ss_dssp EEEEEECTTCCGGGG
T ss_pred EEEEeccCHHHHHHh
Confidence 999999999987753
>d1vqof1 d.79.3.1 (F:1-119) Ribosomal protein L7ae {Archaeon Haloarcula marismortui [TaxId: 2238]}
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class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Ribosomal protein L7ae
species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=99.96 E-value=1.8e-29 Score=169.96 Aligned_cols=98 Identities=17% Similarity=0.236 Sum_probs=92.7
Q ss_pred hhhHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCc-hhhhhHHHHHHhCCCcEEEecCCHHHHHhhhC
Q 033750 8 KKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPP-LRKSEIEYYAMLAKVGVHHYNGNNVDLGTACG 86 (112)
Q Consensus 8 ~~~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~-~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~G 86 (112)
++..++|+++|++|+++|+++.|.++|+++|++|++++||+|+|++| ++.+++..+|++++|||+ |++|+++||+|||
T Consensus 10 ~~l~~~i~~ll~~a~kagkl~~G~~~v~k~l~~gka~lVilA~D~~p~~~~~~l~~lc~~~~Vp~~-~~~tk~~LG~a~G 88 (119)
T d1vqof1 10 ADLEDDALEALEVARDTGAVKKGTNETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFI-FVEQQDDLGHAAG 88 (119)
T ss_dssp HHHHHHHHHHHHHHHHSSCEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHTTTCCEE-EESCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCCceEEEEECCCChHHHHHHHHHHHhcCCCCEE-EECCHHHHHHHhC
Confidence 56889999999999999999999999999999999999999999997 799999999999999999 6999999999999
Q ss_pred CcccEEEEEEeCcCchHHHh
Q 033750 87 KYFRVSCLSIIDPGDSDIIK 106 (112)
Q Consensus 87 k~~~~~vvaI~d~g~a~~i~ 106 (112)
+++++++++|+|+||++.+.
T Consensus 89 ~~~~~s~v~I~d~g~a~~~~ 108 (119)
T d1vqof1 89 LEVGSAAAAVTDAGEADADV 108 (119)
T ss_dssp CSSCCSEEEESSCSSCHHHH
T ss_pred CCCCeEEEEEEeccchHHHH
Confidence 99888899999999988653
>d2fc3a1 d.79.3.1 (A:4-127) Ribosomal protein L7ae {Aeropyrum pernix [TaxId: 56636]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Ribosomal protein L7ae
species: Aeropyrum pernix [TaxId: 56636]
Probab=99.95 E-value=1.5e-28 Score=166.34 Aligned_cols=97 Identities=18% Similarity=0.316 Sum_probs=92.5
Q ss_pred hhhHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCc-hhhhhHHHHHHhCCCcEEEecCCHHHHHhhhC
Q 033750 8 KKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPP-LRKSEIEYYAMLAKVGVHHYNGNNVDLGTACG 86 (112)
Q Consensus 8 ~~~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~-~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~G 86 (112)
....++++++|++|+++|+++.|.++|+++|++|++++||+|+|++| ++++++..+|++++|||+ |.+|+++||++||
T Consensus 10 e~l~~~i~~~L~~a~k~gkl~~G~~~v~k~i~~~ka~lVvlA~D~~p~~~~~~l~~~c~~~~Vp~~-~~~sk~~LG~a~G 88 (124)
T d2fc3a1 10 EDLAEKAYEAVKRARETGRIKKGTNETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYV-YVPSKKRLGEAAG 88 (124)
T ss_dssp HHHHHHHHHHHHHHHHHSEEEESHHHHHHHHHTTCCSEEEEETTCSSGGGTTTHHHHHHHTTCCEE-EESCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCEeecHHHHHHHHHcCCCeEEEEeCCCChHHHHHHHHHHHHcCCCcEE-EeCCHHHHHHHHC
Confidence 45779999999999999999999999999999999999999999998 899999999999999999 7999999999999
Q ss_pred CcccEEEEEEeCcCchHHH
Q 033750 87 KYFRVSCLSIIDPGDSDII 105 (112)
Q Consensus 87 k~~~~~vvaI~d~g~a~~i 105 (112)
+++++++++|+|+|+++.+
T Consensus 89 ~~~~~s~v~i~~~g~~~~l 107 (124)
T d2fc3a1 89 IEVAAASVAIIEPGDAETL 107 (124)
T ss_dssp CSSCCSEEEEEECGGGHHH
T ss_pred CCCCEEEEEEEeccchHHH
Confidence 9999889999999998876
>d1rlga_ d.79.3.1 (A:) Ribosomal protein L7ae {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
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class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Ribosomal protein L7ae
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.95 E-value=2e-28 Score=163.19 Aligned_cols=96 Identities=20% Similarity=0.247 Sum_probs=90.2
Q ss_pred hhHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCc-hhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCC
Q 033750 9 KTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPP-LRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGK 87 (112)
Q Consensus 9 ~~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~-~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk 87 (112)
+..++++++|++|+++|+++.|.++|+++|++|++++||+|+|++| +.++++..+|++++|||+ |++|+++||++||+
T Consensus 4 ~~~~ki~~~l~~a~~agkl~~G~~~v~k~l~~~ka~lViiA~D~~p~~~~~~i~~lc~~~~vp~~-~~~sk~~LG~a~G~ 82 (113)
T d1rlga_ 4 DMQNEALSLLEKVRESGKVKKGTNETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYI-YVKSKNDLGRAVGI 82 (113)
T ss_dssp HHHHHHHHHHHHHHHHSEEEESHHHHHHHHTTTCCSEEEEESCCSCSTTTTHHHHHHHHHTCCEE-EESCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhCCccccHHHHHHHHHcCCceEEEEeCCCCcHHHHHHHHHHHHhcCCCEE-EeCCHHHHHHHhCC
Confidence 4678999999999999999999999999999999999999999997 688999999999999999 79999999999999
Q ss_pred cccEEEEEEeCcCchHHH
Q 033750 88 YFRVSCLSIIDPGDSDII 105 (112)
Q Consensus 88 ~~~~~vvaI~d~g~a~~i 105 (112)
++++++++|+|+|+++..
T Consensus 83 ~~~~s~~~i~~~g~~~~~ 100 (113)
T d1rlga_ 83 EVPCASAAIINEGELRKE 100 (113)
T ss_dssp SSCCSEEEEEECGGGHHH
T ss_pred CCCEEEEEEEeccchHHH
Confidence 988889999999997643
>d2aifa1 d.79.3.1 (A:16-130) Ribosomal protein L7ae {Cryptosporidium parvum [TaxId: 5807]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Ribosomal protein L7ae
species: Cryptosporidium parvum [TaxId: 5807]
Probab=99.94 E-value=1.8e-27 Score=159.09 Aligned_cols=96 Identities=18% Similarity=0.227 Sum_probs=88.6
Q ss_pred hhHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCch-hhhhHHHHHHhCCCcEEEecCCHHHHHhhhCC
Q 033750 9 KTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPL-RKSEIEYYAMLAKVGVHHYNGNNVDLGTACGK 87 (112)
Q Consensus 9 ~~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~-~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk 87 (112)
+..++|+++|+.|+++|+++.|.++|.++|++|++++||+|+|++|. .++++..+|++++|||+ |++|+.+||.|||+
T Consensus 7 ~~~~~i~~ll~~A~~~~~l~~G~~~v~k~i~~g~a~lViiA~D~~p~~~~~~i~~~c~~~~ip~~-~~~sk~~LG~a~G~ 85 (115)
T d2aifa1 7 DLNNKIINLVQQACNYKQLRKGANEATKALNRGIAEIVLLAADAEPLEILLHLPLVCEDKNTPYV-FVRSKVALGRACGV 85 (115)
T ss_dssp HHHHHHHHHHHHHHHTTCEEESHHHHHHHHHTTCEEEEEEETTCSCHHHHHHHHHHHHHTTCCEE-EESCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCeeecHHHHHHHHHcCCCcEEEEeCCCCchhHHHHHHHHHhcCCCCEE-EeCchHHHHHHhCC
Confidence 47889999999999999999999999999999999999999999985 67889999999999999 79999999999999
Q ss_pred cccEEEEEEeCcCchHHH
Q 033750 88 YFRVSCLSIIDPGDSDII 105 (112)
Q Consensus 88 ~~~~~vvaI~d~g~a~~i 105 (112)
++++++++|.+.+.++..
T Consensus 86 ~~~~~~~~i~~~~~~~~~ 103 (115)
T d2aifa1 86 SRPVIAAAITSKDGSSLS 103 (115)
T ss_dssp SSCCSEEEEECCTTCTTH
T ss_pred CCCeEEEEEecCchHHHH
Confidence 999888888888765544
>d1xbia1 d.79.3.1 (A:2-116) Ribosomal protein L7ae {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Ribosomal protein L7ae
species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.94 E-value=3.5e-27 Score=157.68 Aligned_cols=97 Identities=25% Similarity=0.365 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCc-hhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCccc
Q 033750 12 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPP-LRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFR 90 (112)
Q Consensus 12 ~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~-~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~ 90 (112)
+..-++|++++++|+++.|.++|.++|++|++++||+|+|++| +..++++.+|++++|||+ |++|+++||.+||++++
T Consensus 11 e~~~~~l~~~~ka~~l~~G~~~v~kai~~~~a~lVilA~D~~p~~~~~~l~~lc~~~~Vp~~-~v~sk~~LG~a~g~~~~ 89 (115)
T d1xbia1 11 EIQKELLDAVAKAQKIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYA-YVASKQDLGKAAGLEVA 89 (115)
T ss_dssp HHHHHHHHHHHTCSEEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHHHTCCEE-EESCHHHHHHHTTCSSC
T ss_pred HHHHHHHHHHHHhCCccccHHHHHHHHHcCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCCEE-EECcHhHHHHHhCCCcc
Confidence 3345678999999999999999999999999999999999997 799999999999999999 79999999999999988
Q ss_pred EEEEEEeCcCchHHHhcCC
Q 033750 91 VSCLSIIDPGDSDIIKSLP 109 (112)
Q Consensus 91 ~~vvaI~d~g~a~~i~~~~ 109 (112)
+++++|+|+|+++.+.++.
T Consensus 90 ~s~vai~~~g~~~~~~~l~ 108 (115)
T d1xbia1 90 ASSVAIINEGDAEELKVLI 108 (115)
T ss_dssp CSEEEEEECSCHHHHHHHH
T ss_pred eEEEEEEchhhHHHHHHHH
Confidence 8889999999999887654
>d2alea1 d.79.3.1 (A:1-126) Small nuclear ribonucleoprotein-associated protein 1, Snu13p {Saccharomyces cerevisiae [TaxId: 4932]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Small nuclear ribonucleoprotein-associated protein 1, Snu13p
species: Saccharomyces cerevisiae [TaxId: 4932]
Probab=99.92 E-value=4e-26 Score=154.90 Aligned_cols=91 Identities=18% Similarity=0.256 Sum_probs=82.6
Q ss_pred hhhHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCch-hhhhHHHHHHhCCCcEEEecCCHHHHHhhhC
Q 033750 8 KKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPL-RKSEIEYYAMLAKVGVHHYNGNNVDLGTACG 86 (112)
Q Consensus 8 ~~~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~-~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~G 86 (112)
.+..++++++|++|+++|+++.|.++|.++|++|++++||+|+|++|. ..+++..+|++++|||+ |++|+.+||.|||
T Consensus 14 ~~l~~~i~~ll~~a~~~~~l~~G~~ev~K~i~~g~a~lVviA~D~~p~~~~~~l~~lc~~~~Ip~~-~v~sk~~LG~a~G 92 (126)
T d2alea1 14 AALTQQILDVVQQAANLRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYV-FVPSRVALGRACG 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEESHHHHHHHHHHTCEEEEEEETTCSSGGGGTHHHHHHHHHTCCEE-EESCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCcccCHHHHHHHHHcCCCeEEEEeCCCChHHHHHHHHHHHhccCCCEE-EECchhHHHHHhC
Confidence 347899999999999999999999999999999999999999999985 67778999999999999 7999999999999
Q ss_pred CcccEEEEEEeCc
Q 033750 87 KYFRVSCLSIIDP 99 (112)
Q Consensus 87 k~~~~~vvaI~d~ 99 (112)
+++++++++|.+.
T Consensus 93 ~~~~~~~~~i~~~ 105 (126)
T d2alea1 93 VSRPVIAASITTN 105 (126)
T ss_dssp CSSCCSEEEEECC
T ss_pred CCCCeEEEEEecc
Confidence 9998865555443
>d2ozba1 d.79.3.1 (A:4-128) Spliceosomal 15.5kd protein {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Spliceosomal 15.5kd protein
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=4.9e-25 Score=149.26 Aligned_cols=96 Identities=13% Similarity=0.150 Sum_probs=84.7
Q ss_pred hhhHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCc-hhhhhHHHHHHhCCCcEEEecCCHHHHHhhhC
Q 033750 8 KKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPP-LRKSEIEYYAMLAKVGVHHYNGNNVDLGTACG 86 (112)
Q Consensus 8 ~~~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~-~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~G 86 (112)
.+..++++++|++|+++|+++.|.++|.++|++|++++||+|+|++| ...+++..+|++++|||+ |++|+++||.|||
T Consensus 13 ~~l~~kil~ll~~a~~~~~l~~G~~ev~k~i~~gka~lViiA~D~~p~~~~~~l~~lc~~~~IP~~-~v~sk~~LG~a~G 91 (125)
T d2ozba1 13 AHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYV-FVRSKQALGRACG 91 (125)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEESHHHHHHHHHHTCEEEEEEETTCSSGGGSTHHHHHHHHHTCCEE-EESCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCcccChHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHhcCCceEE-EECCchHHHHHhC
Confidence 45889999999999999999999999999999999999999999998 567888999999999999 7999999999999
Q ss_pred CcccEEEEEE--eCcCchHH
Q 033750 87 KYFRVSCLSI--IDPGDSDI 104 (112)
Q Consensus 87 k~~~~~vvaI--~d~g~a~~ 104 (112)
+++++++++| .|.+++..
T Consensus 92 ~~~~~~~~~i~~~~~~~~~~ 111 (125)
T d2ozba1 92 VSRPVIACSVTIKEGSQLKQ 111 (125)
T ss_dssp CSSCCSEEEEECCTTCTTHH
T ss_pred CCCCeEEEEEEecCcHHHHH
Confidence 9887654444 46565443
>d1gz0a2 d.79.3.3 (A:2-77) RlmB, N-terminal domain {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: RNA 2'-O ribose methyltransferase substrate binding domain
domain: RlmB, N-terminal domain
species: Escherichia coli [TaxId: 562]
Probab=98.09 E-value=5.2e-06 Score=49.51 Aligned_cols=72 Identities=13% Similarity=0.093 Sum_probs=59.9
Q ss_pred ceecHHHHHHHHhcC--CceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeCcC
Q 033750 27 YTLGYKTVLRSLRSS--KGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPG 100 (112)
Q Consensus 27 lv~G~~~v~kai~~g--ka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~d~g 100 (112)
+++|.+.|..+|+++ ++.-++++.+........+..+|..++||+. ++ ++.+|.+.+|-...-.+++.+.||
T Consensus 3 ~IyG~haV~eaL~~~~r~i~~l~v~~~~~~~~~~~i~~~a~~~~i~i~-~v-~~~~Ld~l~~~~~HQGVva~v~P~ 76 (76)
T d1gz0a2 3 MIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQ-LA-NRQYLDEKSDGAVHQGIIARVKPG 76 (76)
T ss_dssp EEESHHHHHHHHHSCGGGEEEEEEESSCCCTTTHHHHHHHHHHTCEEE-EE-CSHHHHHTTTSCCCTTEEEEECCC
T ss_pred EEEEhHHHHHHHhCCCCceEEEEEecccccHHHHHHHHHHHHcCCCEE-EE-CHHHHHHhcCCCCCCeEEEEEeCC
Confidence 689999999999886 5788888988877677889999999999998 34 889999999865555568877776
>d2vgna3 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: ERF1/Dom34 C-terminal domain-like
domain: Dom34
species: Saccharomyces cerevisiae [TaxId: 4932]
Probab=96.70 E-value=0.0025 Score=39.96 Aligned_cols=87 Identities=11% Similarity=0.014 Sum_probs=64.5
Q ss_pred hhhHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCc----hhhh---hHHHHHHhCCCcEEEecCCHHH
Q 033750 8 KKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPP----LRKS---EIEYYAMLAKVGVHHYNGNNVD 80 (112)
Q Consensus 8 ~~~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~----~~~~---~i~~~c~~~~Ip~i~~~~sk~e 80 (112)
++..++++..| +...|+.++|.++|.+|+..|-+.-++++.+.-. ..++ .+...++..+..+. +..+.-+
T Consensus 4 ~~~~e~f~~~l--~kd~~~~~YG~~~v~~A~e~gAv~~LlIsd~l~r~~~~~~r~~~~~l~~~~~~~g~~v~-iiS~~~~ 80 (104)
T d2vgna3 4 IMVMDEFLLHL--NKDDDKAWYGEKEVVKAAEYGAISYLLLTDKVLHSDNIAQREEYLKLMDSVESNGGKAL-VLSTLHS 80 (104)
T ss_dssp HHHHHHHHHHH--TTTCSSEEESHHHHHHHHHTTCEEEEEEETTGGGSSCHHHHHHHHHHHHHHHHTTCEEE-EECTTSH
T ss_pred HHHHHHHHHHH--hcCCCEEEECHHHHHHHHHhCCceEEEEecccccccccchHHHHHHHHHHHHhcCCEEE-EEcCCCh
Confidence 44667776664 3467899999999999999999999999998732 2233 45556677899988 4777788
Q ss_pred HHhhhCCcccEEEEEEeCc
Q 033750 81 LGTACGKYFRVSCLSIIDP 99 (112)
Q Consensus 81 LG~a~Gk~~~~~vvaI~d~ 99 (112)
-|.-+ +...- ++||+-.
T Consensus 81 ~G~qL-~~lGG-iaaiLRy 97 (104)
T d2vgna3 81 LGEEL-DQLTG-IACILKY 97 (104)
T ss_dssp HHHHH-HHTTT-EEEEESS
T ss_pred hHHHH-HccCC-EEEEEec
Confidence 88888 45543 6787643
>d2qi2a3 d.79.3.2 (A:244-338) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: ERF1/Dom34 C-terminal domain-like
domain: Cell division protein pelota
species: Thermoplasma acidophilum [TaxId: 2303]
Probab=96.61 E-value=0.0028 Score=39.21 Aligned_cols=84 Identities=12% Similarity=0.056 Sum_probs=63.4
Q ss_pred hhhHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCC-CchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhC
Q 033750 8 KKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNC-PPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACG 86 (112)
Q Consensus 8 ~~~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~-s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~G 86 (112)
++..++++..|. .+..++|.++|.+|+..|-+.-+++..+. ..+-.+++...++..+..++ +..+.-+-|.-+
T Consensus 8 ~~~ie~f~~~l~----kd~~~YG~~eV~~A~e~GAVe~Llisd~l~r~~~~~~l~~~~~~~g~~v~-iis~~~e~G~~L- 81 (95)
T d2qi2a3 8 KEIVDEFLVAVK----KDMGVYGRDQTESALQMGALSDLIITDEMFRTEDGRRSLSIAQTVGTRIH-IVSVSNDPGQIV- 81 (95)
T ss_dssp HHHHHHHHHHHH----TTCEEESHHHHHHHHHTTCEEEEEEEHHHHTSHHHHHHHHHHHHHTCEEE-EECTTSHHHHHH-
T ss_pred HHHHHHHHHHHh----cCCCEECHHHHHHHHHcCCCcEEEEechhhcchhHHHHHHHHHHcCCEEE-EECCCCHHHHHH-
Confidence 456777777663 36789999999999999999999999774 12234567778888999988 477778888877
Q ss_pred CcccEEEEEEeC
Q 033750 87 KYFRVSCLSIID 98 (112)
Q Consensus 87 k~~~~~vvaI~d 98 (112)
+...- ++||+-
T Consensus 82 ~~lGG-iaaiLR 92 (95)
T d2qi2a3 82 KKFGG-FAGILR 92 (95)
T ss_dssp HHTTS-EEEEEC
T ss_pred hcCCC-EEEEEe
Confidence 45443 577763
>d1dt9a2 d.79.3.2 (A:277-422) C-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: ERF1/Dom34 C-terminal domain-like
domain: C-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.60 E-value=0.0022 Score=42.52 Aligned_cols=44 Identities=20% Similarity=0.387 Sum_probs=37.2
Q ss_pred hhhHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCC
Q 033750 8 KKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCP 53 (112)
Q Consensus 8 ~~~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s 53 (112)
++..++++.-|. ...|+.++|.++|++|+..|.+..++++.|..
T Consensus 8 kklv~~f~~el~--~d~g~a~YG~~ev~~ALe~GAVetLLise~L~ 51 (146)
T d1dt9a2 8 KKLIGRYFDEIS--QDTGKYCFGVEDTLKALEMGAVEILIVYENLD 51 (146)
T ss_dssp HHHHHHHHHHHH--SSSCCEEESHHHHHHHHHSSCCSEEEEESCCC
T ss_pred HHHHHHHHHHHh--cCCCcEEECHHHHHHHHHcCCccEEeeeeecc
Confidence 456777777643 46799999999999999999999999999963
>d1x52a1 d.79.3.2 (A:8-118) Cell division protein pelota {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: ERF1/Dom34 C-terminal domain-like
domain: Cell division protein pelota
species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.55 E-value=0.0015 Score=41.59 Aligned_cols=86 Identities=13% Similarity=0.030 Sum_probs=60.6
Q ss_pred hhhHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCC----chhhh---hHHHHHHhCCCcEEEecCCHHH
Q 033750 8 KKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCP----PLRKS---EIEYYAMLAKVGVHHYNGNNVD 80 (112)
Q Consensus 8 ~~~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s----~~~~~---~i~~~c~~~~Ip~i~~~~sk~e 80 (112)
++..++++..| +...|+.++|.++|.+|+..|-+..+++..|.- ...++ .+...++..+..++ +..+.-+
T Consensus 15 ~k~~e~f~~~l--~k~~~~~~YG~~ev~~Ale~GAV~~LLisd~l~r~~~~~~r~~i~~l~~~~~~~g~~v~-iiS~~~e 91 (111)
T d1x52a1 15 VKALDDFYKML--QHEPDRAFYGLKQVEKANEAMAIDTLLISDELFRHQDVATRSRYVRLVDSVKENAGTVR-IFSSLHV 91 (111)
T ss_dssp HHHHHHHHHHH--HSCGGGEEESHHHHHHHHHTTCEEEEEEEHHHHTCSSHHHHHHHHHHHHHHHHTTCEEE-EECSSSH
T ss_pred HHHHHHHHHHH--hCCCCeEEECHHHHHHHHHcCCCcEEEEecccccccchhhHHHHHHHHHHHHhcCCEEE-EEcCCCh
Confidence 34556666654 446789999999999999999999999988752 12333 34456667888888 4777767
Q ss_pred HHhhhCCcccEEEEEEeC
Q 033750 81 LGTACGKYFRVSCLSIID 98 (112)
Q Consensus 81 LG~a~Gk~~~~~vvaI~d 98 (112)
-|.-+ +...- ++||+-
T Consensus 92 ~G~qL-~~lGG-iaaiLR 107 (111)
T d1x52a1 92 SGEQL-SQLTG-VAAILR 107 (111)
T ss_dssp HHHHH-HTTTT-EEEEES
T ss_pred hHHHH-HhcCC-EEEEEe
Confidence 77766 34443 577764
>d1wo8a1 c.24.1.2 (A:1-126) Methylglyoxal synthase, MgsA {Thermus thermophilus [TaxId: 274]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Methylglyoxal synthase-like
superfamily: Methylglyoxal synthase-like
family: Methylglyoxal synthase, MgsA
domain: Methylglyoxal synthase, MgsA
species: Thermus thermophilus [TaxId: 274]
Probab=93.93 E-value=0.055 Score=34.47 Aligned_cols=44 Identities=7% Similarity=-0.028 Sum_probs=35.4
Q ss_pred cHHHHHHHHhcCCceEEEEeCCCCch-----hhhhHHHHHHhCCCcEEE
Q 033750 30 GYKTVLRSLRSSKGKLILLSNNCPPL-----RKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 30 G~~~v~kai~~gka~lVilA~D~s~~-----~~~~i~~~c~~~~Ip~i~ 73 (112)
|..++.+.|++|++.+||.-.|.... --..++..|-.++||+++
T Consensus 60 g~~~i~d~I~~g~IdlVIn~~~~~~~~~~~~D~~~iRR~a~~~~IP~~T 108 (126)
T d1wo8a1 60 GDLQIGARVAEGKVLAVVFLQDPLTAKPHEPDVQALMRVCNVHGVPLAT 108 (126)
T ss_dssp HHHHHHHHHHTTCEEEEEEECCTTSCCTTHHHHHHHHHHHHHTTCCEEC
T ss_pred CCCCHHHHHHcCCccEEEEecCCCCCCcccccHHHHHHHHHHcCCCEEe
Confidence 35789999999999999988775431 225588999999999996
>d1b93a_ c.24.1.2 (A:) Methylglyoxal synthase, MgsA {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Methylglyoxal synthase-like
superfamily: Methylglyoxal synthase-like
family: Methylglyoxal synthase, MgsA
domain: Methylglyoxal synthase, MgsA
species: Escherichia coli [TaxId: 562]
Probab=93.45 E-value=0.067 Score=35.10 Aligned_cols=53 Identities=9% Similarity=-0.063 Sum_probs=39.4
Q ss_pred ecHHHHHHHHhcCCceEEEEeCCCCc-----hhhhhHHHHHHhCCCcEEEecCCHHHH
Q 033750 29 LGYKTVLRSLRSSKGKLILLSNNCPP-----LRKSEIEYYAMLAKVGVHHYNGNNVDL 81 (112)
Q Consensus 29 ~G~~~v~kai~~gka~lVilA~D~s~-----~~~~~i~~~c~~~~Ip~i~~~~sk~eL 81 (112)
-|..++...|.+|++.+||.-.|... .--..|++.|-.+|||+++-..+-+.+
T Consensus 69 gg~p~I~d~I~~g~I~lVIn~~d~~~~~~~~~D~~~IRR~a~~~~IP~~Tn~~tA~a~ 126 (148)
T d1b93a_ 69 GGDQQVGALISEGKIDVLIFFWDPLNAVPHDPDVKALLRLATVWNIPVATNVATADFI 126 (148)
T ss_dssp THHHHHHHHHHTTCCCEEEEECCTTSCCTTHHHHHHHHHHHHHTTCCEESSHHHHHHH
T ss_pred CCCcCHHHHHHcCCccEEEEccCCcCCCcCcccHHHHHHHHHHcCCceEeCHHHHHHH
Confidence 34678999999999999998877432 134678889999999999633333333
>d1vmda_ c.24.1.2 (A:) Methylglyoxal synthase, MgsA {Thermotoga maritima [TaxId: 2336]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Methylglyoxal synthase-like
superfamily: Methylglyoxal synthase-like
family: Methylglyoxal synthase, MgsA
domain: Methylglyoxal synthase, MgsA
species: Thermotoga maritima [TaxId: 2336]
Probab=92.42 E-value=0.11 Score=34.29 Aligned_cols=59 Identities=10% Similarity=-0.041 Sum_probs=42.4
Q ss_pred ceec-HHHHHHHHhcCCceEEEEeCCCCc-h----hhhhHHHHHHhCCCcEEEecCCHHHHHhhh
Q 033750 27 YTLG-YKTVLRSLRSSKGKLILLSNNCPP-L----RKSEIEYYAMLAKVGVHHYNGNNVDLGTAC 85 (112)
Q Consensus 27 lv~G-~~~v~kai~~gka~lVilA~D~s~-~----~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~ 85 (112)
...| .-++...|++|++.+||.-.|... . -...|+..|..++||+++-..+-+.+=.++
T Consensus 66 ~~~gg~p~i~d~I~~geI~lVIn~~d~~~~~~~~~D~~~IRR~a~~~~IP~~Ttl~~A~a~i~ai 130 (156)
T d1vmda_ 66 GPLGGDQQIGAMIAEGKIDVLIFFWDPLEPQAHDVDVKALIRIATVYNIPVAITRSTADFLISSP 130 (156)
T ss_dssp GGGTHHHHHHHHHHTTSCCEEEEECCSSSCCTTSCCHHHHHHHHHHTTCCEESSHHHHHHHHHSG
T ss_pred CCCCCCCCHHHHHHcCCCCEEEECCCCCCCccccchHHHHHHHHHHhCCceecCHHHHHHHHHHH
Confidence 3345 578999999999999998877432 1 246788899999999997333444444443
>d1ipaa2 d.79.3.3 (A:1-105) RrmA (RrmH), N-terminal domain {Thermus thermophilus [TaxId: 274]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: RNA 2'-O ribose methyltransferase substrate binding domain
domain: RrmA (RrmH), N-terminal domain
species: Thermus thermophilus [TaxId: 274]
Probab=90.75 E-value=0.27 Score=29.32 Aligned_cols=73 Identities=7% Similarity=0.026 Sum_probs=48.5
Q ss_pred hCC-ceecHHHHHHHHhcCC-ceEEEEeCCCCc-hhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeC
Q 033750 24 SGK-YTLGYKTVLRSLRSSK-GKLILLSNNCPP-LRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIID 98 (112)
Q Consensus 24 agk-lv~G~~~v~kai~~gk-a~lVilA~D~s~-~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~d 98 (112)
.|. ++-|.+.+.++++.|. ..-++++.+... .....+.......++|++. .|...+.++.+...+-.++||.+
T Consensus 26 ~g~flvEG~r~v~eal~~g~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--vs~~~~~~ls~~~tpqGiiAv~~ 101 (105)
T d1ipaa2 26 QRRFLIEGAREIERALQAGIELEQALVWEGGLNPEEQQVYAALGRVGRLALLE--VSEAVLKKLSVRDNPAGLIALAR 101 (105)
T ss_dssp HTEEEEESHHHHHHHHHTTCCEEEEEEETTCCCHHHHHHHHCC-----CEEEE--ECHHHHHHHCCSSSCCSEEEEEE
T ss_pred hCeEEEEcHHHHHHHHHcCCCceEEEEehhhhccchHHHHHHHhhcCCCeEEE--ECHHHHHHHhCCCCCCcEEEEEe
Confidence 355 4679999999999987 555777666544 3333344444566888874 68999999998766666788864
>d1a9xa2 c.24.1.1 (A:936-1073) Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Methylglyoxal synthase-like
superfamily: Methylglyoxal synthase-like
family: Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain
domain: Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain
species: Escherichia coli [TaxId: 562]
Probab=85.41 E-value=0.18 Score=32.47 Aligned_cols=60 Identities=13% Similarity=0.048 Sum_probs=42.4
Q ss_pred CceecHHHHHHHHhcCCceEEEEeCCCCchhh--hhHHHHHHhCCCcEEEecCCHHHHHhhh
Q 033750 26 KYTLGYKTVLRSLRSSKGKLILLSNNCPPLRK--SEIEYYAMLAKVGVHHYNGNNVDLGTAC 85 (112)
Q Consensus 26 klv~G~~~v~kai~~gka~lVilA~D~s~~~~--~~i~~~c~~~~Ip~i~~~~sk~eLG~a~ 85 (112)
++..|...+.+.|++|++.+||=..+...... -.|+..|-+++||+++-..+-..+-.++
T Consensus 58 ki~~~~p~i~d~i~~gkidlVINt~~~~~~~~dg~~IRR~Av~~~IP~~T~l~~A~a~i~al 119 (138)
T d1a9xa2 58 KVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMAL 119 (138)
T ss_dssp CTTTCSSBHHHHHHHTCCSEEEECCCSHHHHHHTHHHHHHHHHTTCEEESSHHHHHHHHHHH
T ss_pred ccccccccHhHHHhcCCeEEEEECCCCCcccccHHHHHHHHHHcCCCEEecHHHHHHHHHHH
Confidence 34446677999999999999999877433222 5688899999999996333444444444
>d1ko7a1 c.98.2.1 (A:1-129) HPr kinase/phoshatase HprK N-terminal domain {Staphylococcus xylosus [TaxId: 1288]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: MurF and HprK N-domain-like
superfamily: HprK N-terminal domain-like
family: HPr kinase/phoshatase HprK N-terminal domain
domain: HPr kinase/phoshatase HprK N-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]
Probab=83.87 E-value=1.1 Score=27.49 Aligned_cols=47 Identities=15% Similarity=0.112 Sum_probs=34.7
Q ss_pred HHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHH
Q 033750 33 TVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDL 81 (112)
Q Consensus 33 ~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eL 81 (112)
+..+.+-..+...+|++.+..+. ..+..+|+++++|++....+..++
T Consensus 71 ~~i~~l~~~~~~~lIit~g~~~p--~~li~~a~~~~iPll~t~~~t~~~ 117 (129)
T d1ko7a1 71 GRMRKLCRPETPAIIVTRDLEPP--EELIEAAKEHETPLITSKIATTQL 117 (129)
T ss_dssp THHHHHCCTTCCCEEECTTCCCC--HHHHHHHHHTTCCEEECCSCHHHH
T ss_pred HHHHHHhCCCCcEEEEECCCCCC--HHHHHHHHHhCCeEEEeCCcHHHH
Confidence 35667777888899999887653 457889999999999744444443
>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=83.11 E-value=1.8 Score=30.27 Aligned_cols=73 Identities=11% Similarity=0.034 Sum_probs=60.7
Q ss_pred CceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCC-cEEEecCCHHHHHhhhCCcccEEEEEEeCcCc
Q 033750 26 KYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKV-GVHHYNGNNVDLGTACGKYFRVSCLSIIDPGD 101 (112)
Q Consensus 26 klv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~I-p~i~~~~sk~eLG~a~Gk~~~~~vvaI~d~g~ 101 (112)
-++.-.-|+.++-.-|--.++++++-.+++..+.+..+|...|. |+++ +.|.+||-+++--... ++||.+.+.
T Consensus 110 DFIid~~QI~ea~~~GADaiLLI~~~L~~~~l~~l~~~a~~lgl~~LvE-vh~~~El~~a~~~~a~--iIGINnRnL 183 (247)
T d1a53a_ 110 DFIVKESQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLIE-INDENDLDIALRIGAR--FIGINSRDL 183 (247)
T ss_dssp SCCCSHHHHHHHHHHTCSEEEEEGGGSCHHHHHHHHHHHHTTTCCCEEE-ECSHHHHHHHHHTTCS--EEEEESBCT
T ss_pred ccccChHHHHHHHHhhcchhhhhhhhccHHHHHHHHHHHHHHhhhHHhh-cCCHHHHHHHHhCCCC--eEeeeccCh
Confidence 45666778999999998888999999998888999999999986 5665 8999999999976644 589987765
>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermotoga maritima [TaxId: 2336]
Probab=81.08 E-value=4 Score=28.46 Aligned_cols=74 Identities=9% Similarity=-0.006 Sum_probs=59.3
Q ss_pred CceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCC-cEEEecCCHHHHHhhhCCcccEEEEEEeCcCc
Q 033750 26 KYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKV-GVHHYNGNNVDLGTACGKYFRVSCLSIIDPGD 101 (112)
Q Consensus 26 klv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~I-p~i~~~~sk~eLG~a~Gk~~~~~vvaI~d~g~ 101 (112)
-++.-.-|+.++-.-|--.++++++=.++...+.+..+|...+. |+++ +.+.+||-+++..... .++||.+.+.
T Consensus 108 DFIid~~QI~ea~~~GADaiLLI~~~L~~~~l~~l~~~a~~lgle~LvE-vh~~~El~~al~~~~a-~iiGINnRdL 182 (251)
T d1i4na_ 108 DFYIDTVQVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVE-VHSREDLEKVFSVIRP-KIIGINTRDL 182 (251)
T ss_dssp CCCCSTHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHTTTCEEEEE-ECSHHHHHHHHTTCCC-SEEEEECBCT
T ss_pred hhhhCHHHHHHHHhhccceEEeecccccHHHHHHHHHHHHHhCCeeecc-cCCHHHHHHHhccccc-ceeeeeecch
Confidence 45677788999999998888888888888888999999999997 5555 8999999999854322 2699976543
