AmiGO: BLAST Results


BLAST match view associations BLAST with AT2G37510 AT2G37510 AT2G37510	protein from Arabidopsis thaliana	1.2e-14
BLAST match view associations BLAST with AT5G06210 AT5G06210 AT5G06210	protein from Arabidopsis thaliana	2.1e-13
BLAST match view associations BLAST with AT1G73530 AT1G73530 AT1G73530	protein from Arabidopsis thaliana	7.4e-12
BLAST match view associations BLAST with AT3G46020 AT3G46020 AT3G46020	protein from Arabidopsis thaliana	4.9e-11
BLAST match view associations BLAST with AT5G54580 AT5G54580 AT5G54580	protein from Arabidopsis thaliana	1.6e-10
BLAST match view associations BLAST with GRP4 GRP4 GRP4 AT3G23830	protein from Arabidopsis thaliana	2.6e-10
BLAST match view associations BLAST with AT2G27330 AT2G27330 AT2G27330	protein from Arabidopsis thaliana	4.1e-10
BLAST match view associations BLAST with F6RBQ9 F6RBQ9 F6RBQ9 Uncharacterized protein	protein from Bos taurus	4.2e-10
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	4.2e-10
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Sus scrofa	4.2e-10
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Rana catesbeiana	5.3e-10
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Xenopus (Silurana) tropicalis	5.3e-10
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif protein 3	protein from Mus musculus	5.3e-10
BLAST match view associations BLAST with cirbp cirbp cirbp cold inducible RNA binding protein	gene_product from Danio rerio	6.7e-10
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Putative RNA-binding protein 3	protein from Homo sapiens	6.8e-10
BLAST match view associations BLAST with AT5G19030 AT5G19030 AT5G19030	protein from Arabidopsis thaliana	6.8e-10
BLAST match view associations BLAST with ATRZ-1A ATRZ-1A ATRZ-1A AT3G26420	protein from Arabidopsis thaliana	7.9e-10
BLAST match view associations BLAST with CCR1 CCR1 CCR1 AT4G39260	protein from Arabidopsis thaliana	1.1e-09
BLAST match view associations BLAST with cirbp-b cirbp-b cirbp-b Cold-inducible RNA-binding protein B	protein from Xenopus laevis	1.1e-09
BLAST match view associations BLAST with zgc:112425 zgc:112425 zgc:112425	gene_product from Danio rerio	1.1e-09
BLAST match view associations BLAST with PABPC1L PABPC1L PABPC1L Uncharacterized protein	protein from Gallus gallus	1.1e-09
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif (RNP1, RRM) protein 3	gene from Rattus norvegicus	1.4e-09
BLAST match view associations BLAST with AT5G59860 AT5G59860 AT5G59860	protein from Arabidopsis thaliana	1.8e-09
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Canis lupus familiaris	2.2e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	2.2e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	2.2e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	2.2e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.2e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.2e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.2e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.2e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.2e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Sus scrofa	2.2e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Cricetulus griseus	2.2e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Pongo abelii	2.2e-09
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	protein from Mus musculus	2.2e-09
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	gene from Rattus norvegicus	2.2e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	2.4e-09
BLAST match view associations BLAST with MCA1010 MCA1010 MCA1010 RNA-binding protein	protein from Methylococcus capsulatus str. Bath	2.9e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	3.2e-09
BLAST match view associations BLAST with blt801 blt801 blt801 Glycine-rich RNA-binding protein blt801	protein from Hordeum vulgare	3.6e-09
BLAST match view associations BLAST with cirbp-a cirbp-a cirbp-a Cold-inducible RNA-binding protein A	protein from Xenopus laevis	3.6e-09
BLAST match view associations BLAST with GR-RBP2 GR-RBP2 GR-RBP2 AT4G13850	protein from Arabidopsis thaliana	3.6e-09
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Canis lupus familiaris	4.5e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	5.3e-09
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Polyadenylate-binding protein 4	protein from Homo sapiens	5.3e-09
BLAST match view associations BLAST with AT4G13860 AT4G13860 AT4G13860	protein from Arabidopsis thaliana	5.7e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Bos taurus	7.7e-09
BLAST match view associations BLAST with epabp-a epabp-a epabp-a Embryonic polyadenylate-binding protein A	protein from Xenopus laevis	2.1e-08
BLAST match view associations BLAST with CIRBP CIRBP CIRBP cDNA FLJ52850, moderately similar to Cold-inducible RNA-binding protein	protein from Homo sapiens	3.1e-08
BLAST match view associations BLAST with epabp-b epabp-b epabp-b Embryonic polyadenylate-binding protein B	protein from Xenopus laevis	3.3e-08
BLAST match view associations BLAST with epabp epabp epabp Embryonic polyadenylate-binding protein	protein from Xenopus (Silurana) tropicalis	3.3e-08
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	4.0e-08
BLAST match view associations BLAST with GRP7 GRP7 GRP7 AT2G21660	protein from Arabidopsis thaliana	5.6e-08
BLAST match view associations BLAST with PABPC1L PABPC1L PABPC1L Uncharacterized protein	protein from Sus scrofa	6.6e-08
BLAST match view associations BLAST with GR-RBP6 GR-RBP6 GR-RBP6 AT1G18630	protein from Arabidopsis thaliana	7.8e-08
BLAST match view associations BLAST with AT1G78260 AT1G78260 AT1G78260	protein from Arabidopsis thaliana	1.1e-07
BLAST match view associations BLAST with PABPC1L PABPC1L PABPC1L Uncharacterized protein	protein from Canis lupus familiaris	1.2e-07
BLAST match view associations BLAST with AT3G08000 AT3G08000 AT3G08000	protein from Arabidopsis thaliana	1.2e-07
BLAST match view associations BLAST with PABPC1L PABPC1L PABPC1L Uncharacterized protein	protein from Bos taurus	1.4e-07
BLAST match view associations BLAST with pabpc1-b pabpc1-b pabpc1-b Polyadenylate-binding protein 1-B	protein from Xenopus laevis	1.5e-07
BLAST match view associations BLAST with ORRM1 ORRM1 ORRM1 AT3G20930	protein from Arabidopsis thaliana	1.5e-07
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Polyadenylate-binding protein 4	protein from Homo sapiens	1.6e-07
BLAST match view associations BLAST with AT1G33470 AT1G33470 AT1G33470	protein from Arabidopsis thaliana	1.7e-07
BLAST match view associations BLAST with orf19.6090 orf19.6090 orf19.6090	gene_product from Candida albicans	1.7e-07
BLAST match view associations BLAST with NSR1 NSR1 NSR1 Potential nuclear localization sequence binding protein Nsr1p	protein from Candida albicans SC5314	1.7e-07
BLAST match view associations BLAST with PABPC3 PABPC3 PABPC3 Polyadenylate-binding protein 3	protein from Homo sapiens	1.8e-07
BLAST match view associations BLAST with GSU1324 GSU1324 GSU1324 RNA-binding protein	protein from Geobacter sulfurreducens PCA	1.8e-07
BLAST match view associations BLAST with GSU_1324 GSU_1324 GSU_1324 RNA-binding protein	protein from Geobacter sulfurreducens PCA	1.8e-07
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Uncharacterized protein	protein from Canis lupus familiaris	1.8e-07
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Uncharacterized protein	protein from Sus scrofa	1.8e-07
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Polyadenylate-binding protein 4	protein from Homo sapiens	2.2e-07
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Uncharacterized protein	protein from Gallus gallus	2.3e-07
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Uncharacterized protein	protein from Canis lupus familiaris	2.4e-07
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Polyadenylate-binding protein 4	protein from Homo sapiens	2.5e-07
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 PABPC4 protein	protein from Bos taurus	2.5e-07
BLAST match view associations BLAST with NSR1 NSR1 NSR1 Nucleolar protein that binds nuclear localization sequences	gene from Saccharomyces cerevisiae	3.1e-07
BLAST match view associations BLAST with MGG_01268 MGG_01268 MGG_01268 Nuclear localization sequence binding protein	protein from Magnaporthe oryzae 70-15	3.1e-07
BLAST match view associations BLAST with RPS19 RPS19 RPS19 AT5G47320	protein from Arabidopsis thaliana	3.7e-07
BLAST match view associations BLAST with PABPC3 PABPC3 PABPC3 Polyadenylate-binding protein 3	protein from Homo sapiens	3.7e-07
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Polyadenylate-binding protein 1	protein from Homo sapiens	3.8e-07
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Uncharacterized protein	protein from Gallus gallus	3.8e-07
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Polyadenylate-binding protein 1	protein from Homo sapiens	4.1e-07
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Uncharacterized protein	protein from Canis lupus familiaris	4.2e-07
BLAST match view associations BLAST with pabpc1l pabpc1l pabpc1l poly(A) binding protein, cytoplasmic 1-like	gene_product from Danio rerio	4.6e-07
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Polyadenylate-binding protein 1	protein from Bos taurus	4.9e-07
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Uncharacterized protein	protein from Canis lupus familiaris	4.9e-07
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Polyadenylate-binding protein 1	protein from Homo sapiens	4.9e-07
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Uncharacterized protein	protein from Sus scrofa	4.9e-07
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Polyadenylate-binding protein 1	protein from Pongo abelii	4.9e-07
BLAST match view associations BLAST with Pabpc1 Pabpc1 Pabpc1 poly(A) binding protein, cytoplasmic 1	protein from Mus musculus	4.9e-07
BLAST match view associations BLAST with Pabpc1 Pabpc1 Pabpc1 poly(A) binding protein, cytoplasmic 1	gene from Rattus norvegicus	4.9e-07
BLAST match view associations BLAST with Pabpc6 Pabpc6 Pabpc6 poly(A) binding protein, cytoplasmic 6	gene from Rattus norvegicus	5.1e-07
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Polyadenylate-binding protein 4	protein from Homo sapiens	5.2e-07
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Uncharacterized protein	protein from Sus scrofa	5.2e-07
BLAST match view associations BLAST with pabpc1A pabpc1A pabpc1A polyadenylate binding protein (PABP)	gene from Dictyostelium discoideum	5.9e-07
BLAST match view associations BLAST with I3LQ36 I3LQ36 I3LQ36 Uncharacterized protein	protein from Sus scrofa	6.1e-07
BLAST match view associations BLAST with Pabpc1l Pabpc1l Pabpc1l poly(A) binding protein, cytoplasmic 1-like	gene from Rattus norvegicus	7.3e-07
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033751
        (112 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2049816 - symbol:AT2G37510 species:3702 "Arabi...   160  1.2e-14   2
TAIR|locus:2160752 - symbol:AT5G06210 species:3702 "Arabi...   148  2.1e-13   2
TAIR|locus:2206850 - symbol:AT1G73530 species:3702 "Arabi...   140  7.4e-12   2
TAIR|locus:2077137 - symbol:AT3G46020 species:3702 "Arabi...   130  4.9e-11   2
TAIR|locus:2172144 - symbol:AT5G54580 species:3702 "Arabi...   122  1.6e-10   2
ASPGD|ASPL0000040642 - symbol:AN2989 species:162425 "Emer...   123  2.6e-10   2
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin...   115  2.6e-10   2
TAIR|locus:2039590 - symbol:AT2G27330 species:3702 "Arabi...   144  4.1e-10   1
UNIPROTKB|F6RBQ9 - symbol:F6RBQ9 "Uncharacterized protein...   117  4.2e-10   2
UNIPROTKB|K7ENX8 - symbol:CIRBP "Cold-inducible RNA-bindi...   117  4.2e-10   2
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ...   117  4.2e-10   2
UNIPROTKB|Q9PTX2 - symbol:cirbp "Cold-inducible RNA-bindi...   119  5.3e-10   2
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi...   116  5.3e-10   2
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ...   116  5.3e-10   2
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot...   116  5.3e-10   2
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ...   125  6.7e-10   2
UNIPROTKB|P98179 - symbol:RBM3 "Putative RNA-binding prot...   115  6.8e-10   2
TAIR|locus:2179624 - symbol:AT5G19030 species:3702 "Arabi...   114  6.8e-10   2
TAIR|locus:2079276 - symbol:ATRZ-1A species:3702 "Arabido...   125  7.9e-10   2
TAIR|locus:2136298 - symbol:CCR1 "cold, circadian rhythm,...   118  1.1e-09   2
UNIPROTKB|Q9DED4 - symbol:cirbp-b "Cold-inducible RNA-bin...   113  1.1e-09   2
ZFIN|ZDB-GENE-050417-329 - symbol:zgc:112425 "zgc:112425"...   113  1.1e-09   2
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei...   141  1.1e-09   2
RGD|620145 - symbol:Rbm3 "RNA binding motif (RNP1, RRM) p...   112  1.4e-09   2
TAIR|locus:2168133 - symbol:AT5G59860 species:3702 "Arabi...   138  1.8e-09   1
UNIPROTKB|E2R771 - symbol:RBM3 "Uncharacterized protein" ...   115  2.2e-09   2
UNIPROTKB|H9L0U4 - symbol:CIRBP "Uncharacterized protein"...   110  2.2e-09   2
UNIPROTKB|H9L3B3 - symbol:CIRBP "Uncharacterized protein"...   110  2.2e-09   2
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"...   110  2.2e-09   2
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi...   110  2.2e-09   2
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi...   110  2.2e-09   2
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi...   110  2.2e-09   2
UNIPROTKB|K7ER40 - symbol:CIRBP "Cold-inducible RNA-bindi...   110  2.2e-09   2
UNIPROTKB|Q14011 - symbol:CIRBP "Cold-inducible RNA-bindi...   110  2.2e-09   2
UNIPROTKB|F1S6R1 - symbol:CIRBP "Uncharacterized protein"...   110  2.2e-09   2
UNIPROTKB|P60826 - symbol:CIRBP "Cold-inducible RNA-bindi...   110  2.2e-09   2
UNIPROTKB|Q5RF83 - symbol:CIRBP "Cold-inducible RNA-bindi...   110  2.2e-09   2
MGI|MGI:893588 - symbol:Cirbp "cold inducible RNA binding...   110  2.2e-09   2
RGD|620756 - symbol:Cirbp "cold inducible RNA binding pro...   110  2.2e-09   2
UNIPROTKB|F6XHA7 - symbol:CIRBP "Uncharacterized protein"...   110  2.4e-09   2
UNIPROTKB|Q60A61 - symbol:MCA1010 "RNA-binding protein" s...   136  2.9e-09   1
UNIPROTKB|H9KZV5 - symbol:CIRBP "Uncharacterized protein"...   110  3.2e-09   2
UNIPROTKB|Q43472 - symbol:blt801 "Glycine-rich RNA-bindin...   113  3.6e-09   2
UNIPROTKB|O93235 - symbol:cirbp-a "Cold-inducible RNA-bin...   111  3.6e-09   2
TAIR|locus:2119495 - symbol:GR-RBP2 "AT4G13850" species:3...   109  3.6e-09   2
UNIPROTKB|E2R228 - symbol:E2R228 "Uncharacterized protein...   107  4.5e-09   2
UNIPROTKB|K7EQR7 - symbol:CIRBP "Cold-inducible RNA-bindi...   110  5.3e-09   2
UNIPROTKB|H0YCC8 - symbol:PABPC4 "Polyadenylate-binding p...   115  5.3e-09   2
TAIR|locus:2119505 - symbol:AT4G13860 species:3702 "Arabi...   104  5.7e-09   2
UNIPROTKB|Q3SZN4 - symbol:CIRBP "Uncharacterized protein"...   110  7.7e-09   2
UNIPROTKB|Q98SP8 - symbol:epabp-a "Embryonic polyadenylat...   129  2.1e-08   2
UNIPROTKB|B4E2X2 - symbol:CIRBP "Cold-inducible RNA-bindi...   109  3.1e-08   2
UNIPROTKB|Q6GR16 - symbol:epabp-b "Embryonic polyadenylat...   127  3.3e-08   2
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-...   127  3.3e-08   2
UNIPROTKB|D6W5Y5 - symbol:CIRBP "Cold-inducible RNA-bindi...   110  4.0e-08   2
TAIR|locus:2049359 - symbol:GRP7 "AT2G21660" species:3702...   103  5.6e-08   2
UNIPROTKB|F1SDR6 - symbol:PABPC1L "Uncharacterized protei...   117  6.6e-08   2
TAIR|locus:2027438 - symbol:GR-RBP6 "glycine-rich RNA-bin...    96  7.8e-08   2
TAIR|locus:2032120 - symbol:AT1G78260 species:3702 "Arabi...   110  1.1e-07   2
UNIPROTKB|E2RND1 - symbol:PABPC1L "Uncharacterized protei...   121  1.2e-07   2
TAIR|locus:2077427 - symbol:AT3G08000 species:3702 "Arabi...    86  1.2e-07   2
UNIPROTKB|E1BNB4 - symbol:PABPC1L "Uncharacterized protei...   112  1.4e-07   3
UNIPROTKB|Q6IP09 - symbol:pabpc1-b "Polyadenylate-binding...   121  1.5e-07   2
TAIR|locus:2088756 - symbol:AT3G20930 species:3702 "Arabi...   127  1.5e-07   1
UNIPROTKB|H0Y5F5 - symbol:PABPC4 "Polyadenylate-binding p...   119  1.6e-07   2
TAIR|locus:2006998 - symbol:AT1G33470 species:3702 "Arabi...   104  1.7e-07   2
CGD|CAL0005232 - symbol:orf19.6090 species:5476 "Candida ...   127  1.7e-07   1
UNIPROTKB|Q5AB84 - symbol:NSR1 "Potential nuclear localiz...   127  1.7e-07   1
UNIPROTKB|H3BPI5 - symbol:PABPC3 "Polyadenylate-binding p...   123  1.8e-07   1
UNIPROTKB|Q74DJ2 - symbol:GSU1324 "RNA-binding protein" s...   119  1.8e-07   1
TIGR_CMR|GSU_1324 - symbol:GSU_1324 "RNA-binding protein"...   119  1.8e-07   1
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein...   120  1.8e-07   2
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein...   120  1.8e-07   2
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p...   119  2.2e-07   2
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein...   119  2.3e-07   2
UNIPROTKB|E2R9I1 - symbol:PABPC4 "Uncharacterized protein...   120  2.4e-07   2
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p...   119  2.5e-07   2
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein...   119  2.5e-07   2
SGD|S000003391 - symbol:NSR1 "Nucleolar protein that bind...   125  3.1e-07   1
UNIPROTKB|G4MY43 - symbol:MGG_01268 "Nuclear localization...   126  3.1e-07   1
TAIR|locus:2171539 - symbol:RPS19 "ribosomal protein S19"...    94  3.7e-07   2
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p...   123  3.7e-07   1
UNIPROTKB|H0YAP2 - symbol:PABPC1 "Polyadenylate-binding p...   116  3.8e-07   1
UNIPROTKB|F1NH81 - symbol:PABPC1 "Uncharacterized protein...   116  3.8e-07   2
UNIPROTKB|E7EQV3 - symbol:PABPC1 "Polyadenylate-binding p...   116  4.1e-07   2
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein...   116  4.2e-07   2
ZFIN|ZDB-GENE-030131-5836 - symbol:pabpc1l "poly(A) bindi...   116  4.6e-07   2
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p...   116  4.9e-07   2
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein...   116  4.9e-07   2
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p...   116  4.9e-07   2
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein...   116  4.9e-07   2
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p...   116  4.9e-07   2
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,...   116  4.9e-07   2
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto...   116  4.9e-07   2
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt...   116  5.1e-07   2
UNIPROTKB|H0YEQ8 - symbol:PABPC4 "Polyadenylate-binding p...    94  5.2e-07   2
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein...   116  5.2e-07   2
DICTYBASE|DDB_G0293558 - symbol:pabpc1A "polyadenylate bi...   114  5.9e-07   2
UNIPROTKB|I3LQ36 - symbol:I3LQ36 "Uncharacterized protein...   114  6.1e-07   1
RGD|1563142 - symbol:Pabpc1l "poly(A) binding protein, cy...   110  7.3e-07   2

WARNING:  Descriptions of 293 database sequences were not reported due to the
          limiting value of parameter V = 100.


>TAIR|locus:2049816 [details] [associations]
            symbol:AT2G37510 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 EMBL:AC005896 GO:GO:0003676 HOGENOM:HOG000276232
            HSSP:P11940 EMBL:AY084740 EMBL:BT028941 IPI:IPI00545899 PIR:F84793
            RefSeq:NP_181287.1 UniGene:At.37414 ProteinModelPortal:Q8S8L4
            SMR:Q8S8L4 PRIDE:Q8S8L4 EnsemblPlants:AT2G37510.1 GeneID:818327
            KEGG:ath:AT2G37510 TAIR:At2g37510 eggNOG:NOG305672
            InParanoid:Q8S8L4 OMA:NKTIGWC PhylomeDB:Q8S8L4
            ProtClustDB:CLSN2683075 ArrayExpress:Q8S8L4 Genevestigator:Q8S8L4
            Uniprot:Q8S8L4
        Length = 142

 Score = 160 (61.4 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
 Identities = 37/72 (51%), Positives = 48/72 (66%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS--RRYN 96
             L  A +I D+   RSKG+G+VT++T E+A+KA A+MN K LDG VIFVD  RP   RR  
Sbjct:    60 LVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPREPRRPL 119

Query:    97 TDAPLARQSAQS 108
                PL R S++S
Sbjct:   120 QQEPL-RPSSES 130

 Score = 40 (19.1 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query:     2 LADAFSQFGQVTE 14
             L DAF+ FGQ+ +
Sbjct:    50 LQDAFASFGQLVD 62


>TAIR|locus:2160752 [details] [associations]
            symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
            HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
            IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
            ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
            PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
            KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
            PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
            Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
        Length = 146

 Score = 148 (57.2 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
 Identities = 30/64 (46%), Positives = 44/64 (68%)

Query:    42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDA-- 99
             A I+MD+  +RSKG+G+VTF++ +EAQKAL + NG+ L+GR IFVD  +  +        
Sbjct:    63 AQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQSLGGGGGY 122

Query:   100 PLAR 103
             P+AR
Sbjct:   123 PIAR 126

 Score = 40 (19.1 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
 Identities = 8/13 (61%), Positives = 11/13 (84%)

Query:     2 LADAFSQFGQVTE 14
             L++AFS+ GQV E
Sbjct:    50 LSEAFSKCGQVVE 62


>TAIR|locus:2206850 [details] [associations]
            symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
            EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
            RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
            SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
            GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
            HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
            ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
        Length = 181

 Score = 140 (54.3 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
 Identities = 26/52 (50%), Positives = 36/52 (69%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 90
             L    ++MDK  NR KG+ ++ + TEEEA KA+  M+GK LDGRVIFV+  +
Sbjct:   103 LIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAK 154

 Score = 33 (16.7 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D F QFG +
Sbjct:    93 LRDTFEQFGNL 103


>TAIR|locus:2077137 [details] [associations]
            symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
            HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
            IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
            ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
            GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
            OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
            Genevestigator:Q9LZT1 Uniprot:Q9LZT1
        Length = 102

 Score = 130 (50.8 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
 Identities = 22/46 (47%), Positives = 36/46 (78%)

Query:    42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
             A +I D    R KG+G++TF +E++A+KAL  ++GK++DGR+IFV+
Sbjct:    36 ARLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVE 81

 Score = 35 (17.4 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
 Identities = 7/13 (53%), Positives = 8/13 (61%)

Query:     2 LADAFSQFGQVTE 14
             L   FS FGQ+ E
Sbjct:    23 LRQLFSPFGQIKE 35


>TAIR|locus:2172144 [details] [associations]
            symbol:AT5G54580 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0005739
            "mitochondrion" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB016879 HOGENOM:HOG000276232
            HSSP:Q61474 UniGene:At.52694 EMBL:AY072101 EMBL:AY096589
            EMBL:AY085234 IPI:IPI00521049 RefSeq:NP_200269.1 UniGene:At.20805
            ProteinModelPortal:Q9FIU6 SMR:Q9FIU6 IntAct:Q9FIU6 PaxDb:Q9FIU6
            PRIDE:Q9FIU6 EnsemblPlants:AT5G54580.1 GeneID:835546
            KEGG:ath:AT5G54580 TAIR:At5g54580 eggNOG:NOG324885
            InParanoid:Q9FIU6 OMA:IKGMDGK PhylomeDB:Q9FIU6
            ProtClustDB:CLSN2696829 ArrayExpress:Q9FIU6 Genevestigator:Q9FIU6
            Uniprot:Q9FIU6
        Length = 156

 Score = 122 (48.0 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
 Identities = 23/59 (38%), Positives = 37/59 (62%)

Query:    42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             A ++ D+    SKG+G+V ++T E++ K +A M+GK LDG VIF +  RP  +  +  P
Sbjct:    85 AKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSYQP 143

 Score = 38 (18.4 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query:     2 LADAFSQFGQVTE 14
             L  AF+QFG+V +
Sbjct:    72 LRTAFAQFGEVAD 84


>ASPGD|ASPL0000040642 [details] [associations]
            symbol:AN2989 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
            GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
            ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
            Uniprot:C8VIY5
        Length = 128

 Score = 123 (48.4 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
 Identities = 24/55 (43%), Positives = 36/55 (65%)

Query:    42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV--RPSRR 94
             A ++ D+  NRS+G+G+V F++E EA  A+  MN +  DGR+I VD    RP+ R
Sbjct:    31 AVVVKDRDTNRSRGFGFVRFASEPEADAAMGAMNNQEFDGRIIRVDKASERPAAR 85

 Score = 35 (17.4 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
 Identities = 6/17 (35%), Positives = 12/17 (70%)

Query:     1 MLADAFSQFGQVTEDLV 17
             +L + FS++G + E +V
Sbjct:    17 VLREGFSRYGTIEEAVV 33


>TAIR|locus:2076096 [details] [associations]
            symbol:GRP4 "glycine-rich RNA-binding protein 4"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
            [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
            "double-stranded DNA binding" evidence=IDA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
            to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
            evidence=IEP] [GO:0009414 "response to water deprivation"
            evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
            [GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
            cell wall organization" evidence=RCA] [GO:0042545 "cell wall
            modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
            EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
            eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
            ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
            IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
            UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
            PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
            EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
            GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
            PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
        Length = 136

 Score = 115 (45.5 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
 Identities = 22/46 (47%), Positives = 34/46 (73%)

Query:    42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
             AT+I D+   RS+G+G+V+FS E+ A  A+ +M+GK L+GR I V+
Sbjct:    64 ATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVN 109

 Score = 43 (20.2 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query:     2 LADAFSQFGQVTEDLV 17
             L  AF+ FG+VTE  V
Sbjct:    51 LKQAFTSFGEVTEATV 66


>TAIR|locus:2039590 [details] [associations]
            symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
            IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
            ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
            EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
            TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
            PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
            Uniprot:Q1ECN0
        Length = 116

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 26/55 (47%), Positives = 41/55 (74%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             +IMDK + R KG+ YVTFS++EEA+KAL ++N +L+DGRV+ +D  + ++    D
Sbjct:    52 VIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLVDGRVVILDTTKAAKHNPPD 106


>UNIPROTKB|F6RBQ9 [details] [associations]
            symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
            [GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
            OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
            Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
        Length = 160

 Score = 117 (46.2 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
 Identities = 22/51 (43%), Positives = 33/51 (64%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
             ++ D+   RS+G+G++TF+  E A  A+  MNG+ LDGR I VD+   S R
Sbjct:    37 VVKDRETQRSRGFGFITFTNPEHASNAMRAMNGESLDGRQIRVDHAGKSAR 87

 Score = 39 (18.8 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query:     2 LADAFSQFGQVTEDLV 17
             L D FS FG ++E +V
Sbjct:    22 LEDHFSSFGPISEVVV 37


>UNIPROTKB|K7ENX8 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
        Length = 89

 Score = 117 (46.2 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
 Identities = 23/50 (46%), Positives = 35/50 (70%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN-VRPS 92
             ++ D+   RS+G+G+VTF   ++A+ A+  MNGK +DGR I VD  +RPS
Sbjct:    37 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQPLRPS 86

 Score = 39 (18.8 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query:     2 LADAFSQFGQVTEDLV 17
             L   FS++GQ++E +V
Sbjct:    22 LEQVFSKYGQISEVVV 37


>UNIPROTKB|I3L5X7 [details] [associations]
            symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
            Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
            Uniprot:I3L5X7
        Length = 156

 Score = 117 (46.2 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
 Identities = 22/51 (43%), Positives = 33/51 (64%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
             ++ D+   RS+G+G++TF+  E A  A+  MNG+ LDGR I VD+   S R
Sbjct:    37 VVKDRETQRSRGFGFITFTNPEHASNAMRAMNGESLDGRQIRVDHAGKSAR 87

 Score = 39 (18.8 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query:     2 LADAFSQFGQVTEDLV 17
             L D FS FG ++E +V
Sbjct:    22 LEDHFSSFGPISEVVV 37


>UNIPROTKB|Q9PTX2 [details] [associations]
            symbol:cirbp "Cold-inducible RNA-binding protein"
            species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
            evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
            "response to cold" evidence=ISS] [GO:0009790 "embryo development"
            evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
            [GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
            "neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
            evidence=IEP] [GO:0045727 "positive regulation of translation"
            evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
            [GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
            "negative regulation of nuclear-transcribed mRNA poly(A) tail
            shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
            GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
            GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
            SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
        Length = 164

 Score = 119 (46.9 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
 Identities = 23/49 (46%), Positives = 33/49 (67%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
             ++ D+   RS+G+G+VTF   E+A+ A+A MNGK +DGR I VD    S
Sbjct:    37 VVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQAGKS 85

 Score = 36 (17.7 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query:     2 LADAFSQFGQVTEDLV 17
             L   FS++GQ+ E +V
Sbjct:    22 LETVFSKYGQIQEVVV 37


>UNIPROTKB|Q28IQ9 [details] [associations]
            symbol:cirbp "Cold-inducible RNA-binding protein"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
            binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
            [GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
            development" evidence=ISS] [GO:0016477 "cell migration"
            evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
            [GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
            regulation of translation" evidence=ISS] [GO:0048255 "mRNA
            stabilization" evidence=ISS] [GO:0048793 "pronephros development"
            evidence=ISS] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            [GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
            GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
            GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
            GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
            RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
            SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
            Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
        Length = 166

 Score = 116 (45.9 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
 Identities = 22/49 (44%), Positives = 32/49 (65%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
             ++ D+   RS+G+G+VTF   E+A+ A+  MNGK +DGR I VD    S
Sbjct:    37 VVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQAGKS 85

 Score = 39 (18.8 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query:     2 LADAFSQFGQVTEDLV 17
             L   FS++GQV E +V
Sbjct:    22 LEQVFSKYGQVAEVVV 37


>MGI|MGI:1099460 [details] [associations]
            symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
            musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
            evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
            [GO:0006950 "response to stress" evidence=IEA] [GO:0009409
            "response to cold" evidence=IDA] [GO:0015934 "large ribosomal
            subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
            [GO:0043023 "ribosomal large subunit binding" evidence=IPI]
            [GO:0045727 "positive regulation of translation" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
            GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
            HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
            GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
            EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
            RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
            ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
            PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
            PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
            Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
            NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
            GermOnline:ENSMUSG00000031167 Uniprot:O89086
        Length = 153

 Score = 116 (45.9 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
 Identities = 22/51 (43%), Positives = 33/51 (64%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
             ++ D+   RS+G+G++TF+  E A  A+  MNG+ LDGR I VD+   S R
Sbjct:    37 VVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSAR 87

 Score = 39 (18.8 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query:     2 LADAFSQFGQVTEDLV 17
             L D FS FG ++E +V
Sbjct:    22 LEDHFSSFGPISEVVV 37


>UNIPROTKB|G3V6P6 [details] [associations]
            symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
            "translation" evidence=IEA] [GO:0009409 "response to cold"
            evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
            silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
            subunit binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
            NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
            Uniprot:G3V6P6
        Length = 156

 Score = 116 (45.9 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
 Identities = 22/51 (43%), Positives = 33/51 (64%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
             ++ D+   RS+G+G++TF+  E A  A+  MNG+ LDGR I VD+   S R
Sbjct:    37 VVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSAR 87

 Score = 39 (18.8 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query:     2 LADAFSQFGQVTEDLV 17
             L D FS FG ++E +V
Sbjct:    22 LEDHFSSFGPISEVVV 37


>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
            symbol:cirbp "cold inducible RNA binding protein"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
            to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
            EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
            Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
            Uniprot:F1R6L3
        Length = 224

 Score = 125 (49.1 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
 Identities = 24/49 (48%), Positives = 35/49 (71%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
             +I D+  +RS+G+G+VTF   E+A+ A+A MNGK +DGR+I VD    S
Sbjct:    54 VIRDRETDRSRGFGFVTFENPEDAKDAMAAMNGKQVDGRMIRVDEAGKS 102

 Score = 33 (16.7 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
 Identities = 6/17 (35%), Positives = 13/17 (76%)

Query:     2 LADAFSQFGQVTE-DLV 17
             L +AFS++G + + D++
Sbjct:    39 LEEAFSKYGTIAKVDVI 55


>UNIPROTKB|P98179 [details] [associations]
            symbol:RBM3 "Putative RNA-binding protein 3" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
            evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
            "dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
            evidence=ISS] [GO:0045727 "positive regulation of translation"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
            "large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
            processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
            GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
            HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
            GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
            RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
            SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
            PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
            PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
            Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
            CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
            MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
            KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
            NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
            Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
        Length = 157

 Score = 115 (45.5 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
 Identities = 22/51 (43%), Positives = 33/51 (64%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
             ++ D+   RS+G+G++TF+  E A  A+  MNG+ LDGR I VD+   S R
Sbjct:    37 VVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHAGKSAR 87

 Score = 39 (18.8 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query:     2 LADAFSQFGQVTEDLV 17
             L D FS FG ++E +V
Sbjct:    22 LEDHFSSFGPISEVVV 37


>TAIR|locus:2179624 [details] [associations]
            symbol:AT5G19030 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002688 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00544212 RefSeq:NP_197404.2
            UniGene:At.31343 ProteinModelPortal:F4JZK9 SMR:F4JZK9
            EnsemblPlants:AT5G19030.1 GeneID:832022 KEGG:ath:AT5G19030
            OMA:RTISCVA PhylomeDB:F4JZK9 Uniprot:F4JZK9
        Length = 172

 Score = 114 (45.2 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
 Identities = 26/53 (49%), Positives = 35/53 (66%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP--SRR 94
             II ++   +S GYGYV F+++E+AQ A+  MNGK  DGR I V   +P  SRR
Sbjct:   108 IIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKFFDGRFILVKFGQPGLSRR 160

 Score = 40 (19.1 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
 Identities = 8/12 (66%), Positives = 9/12 (75%)

Query:     2 LADAFSQFGQVT 13
             L   FS+FGQVT
Sbjct:    93 LKKVFSEFGQVT 104


>TAIR|locus:2079276 [details] [associations]
            symbol:ATRZ-1A species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA;IDA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0009409 "response to cold" evidence=IMP] [GO:0009631 "cold
            acclimation" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
            GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0009631
            GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001298 HOGENOM:HOG000276232
            UniGene:At.48707 HSSP:Q61474 KO:K12885 EMBL:AY054613 EMBL:AF424613
            EMBL:AY072457 EMBL:AK221725 EMBL:AK227088 IPI:IPI00530350
            RefSeq:NP_189273.1 ProteinModelPortal:Q9LIN3 SMR:Q9LIN3
            IntAct:Q9LIN3 STRING:Q9LIN3 PRIDE:Q9LIN3 EnsemblPlants:AT3G26420.1
            GeneID:822246 KEGG:ath:AT3G26420 TAIR:At3g26420 InParanoid:Q9LIN3
            OMA:SSKDDRY PhylomeDB:Q9LIN3 ProtClustDB:CLSN2723027
            Genevestigator:Q9LIN3 Uniprot:Q9LIN3
        Length = 245

 Score = 125 (49.1 bits), Expect = 7.9e-10, Sum P(2) = 7.9e-10
 Identities = 23/53 (43%), Positives = 35/53 (66%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
             L  A +++DK   RS+G+G++TF  ++   +A+A MNG  LDGR I VD  +P
Sbjct:    33 LVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQP 85

 Score = 35 (17.4 bits), Expect = 7.9e-10, Sum P(2) = 7.9e-10
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query:     2 LADAFSQFGQVTE 14
             L DAF ++G + E
Sbjct:    23 LRDAFEKYGHLVE 35


>TAIR|locus:2136298 [details] [associations]
            symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
            cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
            [GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
            "plasma membrane" evidence=IDA] [GO:0009651 "response to salt
            stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
            [GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
            "response to abscisic acid stimulus" evidence=IDA] [GO:0005829
            "cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
            [GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
            evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
            [GO:0000380 "alternative mRNA splicing, via spliceosome"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
            GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
            GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
            EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
            HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
            EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
            IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
            ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
            STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
            EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
            TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
            Uniprot:Q03251
        Length = 169

 Score = 118 (46.6 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 23/47 (48%), Positives = 33/47 (70%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 90
             II D+   RS+G+G+VTF  E+  + A+ +MNGK LDGRVI V+  +
Sbjct:    37 IINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83

 Score = 34 (17.0 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query:     2 LADAFSQFGQVTEDLV 17
             L   FSQFG V +  +
Sbjct:    22 LQRTFSQFGDVIDSKI 37


>UNIPROTKB|Q9DED4 [details] [associations]
            symbol:cirbp-b "Cold-inducible RNA-binding protein B"
            species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
            "gastrulation" evidence=IMP] [GO:0009409 "response to cold"
            evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
            [GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
            binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
            "pronephros development" evidence=ISS] [GO:0060212 "negative
            regulation of nuclear-transcribed mRNA poly(A) tail shortening"
            evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
            GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
            EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
            HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
            PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
            Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
        Length = 166

 Score = 113 (44.8 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 21/49 (42%), Positives = 32/49 (65%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
             ++ D+   RS+G+G+VTF   ++A+ A+  MNGK +DGR I VD    S
Sbjct:    36 VVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQAGKS 84

 Score = 39 (18.8 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query:     2 LADAFSQFGQVTEDLV 17
             L   FS++GQ++E +V
Sbjct:    21 LEQVFSKYGQISEVVV 36


>ZFIN|ZDB-GENE-050417-329 [details] [associations]
            symbol:zgc:112425 "zgc:112425" species:7955 "Danio
            rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
            HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
            OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
            EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
            UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
            Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
            KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
        Length = 185

 Score = 113 (44.8 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 21/44 (47%), Positives = 31/44 (70%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
             +  ++  NRS+G+G+VTF   ++A+ AL  MNGK +DGR I VD
Sbjct:    36 VARNRETNRSRGFGFVTFENPDDAKDALEGMNGKSVDGRTIRVD 79

 Score = 39 (18.8 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 7/12 (58%), Positives = 10/12 (83%)

Query:     2 LADAFSQFGQVT 13
             L DAFS++G +T
Sbjct:    21 LEDAFSKYGVIT 32


>UNIPROTKB|E1BWJ7 [details] [associations]
            symbol:PABPC1L "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
            EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
            RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
            Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
            OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
        Length = 632

 Score = 141 (54.7 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 30/68 (44%), Positives = 44/68 (64%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLAR 103
             ++MD    RSKG+G+V F   EEAQKA+ADMNGK ++GR+++V   R  +R    + L R
Sbjct:   222 VMMDH-TGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVG--RAQKRLERQSELKR 278

Query:   104 QSAQSPEE 111
             +  Q  +E
Sbjct:   279 KFEQMKQE 286

 Score = 101 (40.6 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
 Identities = 21/56 (37%), Positives = 37/56 (66%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
             + +  ++ D+  N S+G+G+V F T+E A +A+  MNG LL+ R +FV + + SR+
Sbjct:   125 ILSCKVVCDE--NGSRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFK-SRK 177

 Score = 100 (40.3 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
 Identities = 23/63 (36%), Positives = 37/63 (58%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M +G   SKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A L  Q
Sbjct:   325 VMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV--ALAQRKEERKAILTNQ 381

Query:   105 SAQ 107
               Q
Sbjct:   382 YMQ 384

 Score = 32 (16.3 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   115 LYDTFSAFGNI 125


>RGD|620145 [details] [associations]
            symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
            evidence=ISO] [GO:0006417 "regulation of translation"
            evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
            [GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
            ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
            evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
            silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
            subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
            translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
            eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
            EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
            RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
            MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
            KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
            Genevestigator:Q925G0 Uniprot:Q925G0
        Length = 155

 Score = 112 (44.5 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 21/51 (41%), Positives = 32/51 (62%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
             ++ D+   RS+G+G++TF+  E A   +  MNG+ LDGR I VD+   S R
Sbjct:    37 VVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESLDGRQIRVDHAGKSAR 87

 Score = 39 (18.8 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query:     2 LADAFSQFGQVTEDLV 17
             L D FS FG ++E +V
Sbjct:    22 LEDHFSSFGPISEVVV 37


>TAIR|locus:2168133 [details] [associations]
            symbol:AT5G59860 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00539298
            RefSeq:NP_200794.1 UniGene:At.66722 ProteinModelPortal:F4JXD2
            SMR:F4JXD2 EnsemblPlants:AT5G59860.1 GeneID:836108
            KEGG:ath:AT5G59860 Uniprot:F4JXD2
        Length = 157

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 26/54 (48%), Positives = 41/54 (75%)

Query:    39 LFA--ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 90
             LFA  A +I D+   R KG+G++TF +E++AQKAL  +NGK+++GR+IFV+  +
Sbjct:    90 LFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVETAK 143


>UNIPROTKB|E2R771 [details] [associations]
            symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
            Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
            Uniprot:E2R771
        Length = 162

 Score = 115 (45.5 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 22/51 (43%), Positives = 33/51 (64%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
             ++ D+   RS+G+G++TF+  E A  A+  MNG+ LDGR I VD+   S R
Sbjct:    37 VVKDRETQRSRGFGFITFTDPEHASDAMRAMNGESLDGRQIRVDHAGKSAR 87

 Score = 34 (17.0 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query:     2 LADAFSQFGQVTEDLV 17
             L D F  FG ++E +V
Sbjct:    22 LEDHFRSFGPISEVVV 37


>UNIPROTKB|H9L0U4 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
        Length = 167

 Score = 110 (43.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 21/49 (42%), Positives = 32/49 (65%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
             ++ D+   RS+G+G+VTF   ++A+ A+  MNGK +DGR I VD    S
Sbjct:    37 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 85

 Score = 39 (18.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query:     2 LADAFSQFGQVTEDLV 17
             L   FS++GQ++E +V
Sbjct:    22 LEQVFSKYGQISEVVV 37


>UNIPROTKB|H9L3B3 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
        Length = 172

 Score = 110 (43.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 21/49 (42%), Positives = 32/49 (65%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
             ++ D+   RS+G+G+VTF   ++A+ A+  MNGK +DGR I VD    S
Sbjct:    37 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 85

 Score = 39 (18.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query:     2 LADAFSQFGQVTEDLV 17
             L   FS++GQ++E +V
Sbjct:    22 LEQVFSKYGQISEVVV 37


>UNIPROTKB|E2R6G2 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
        Length = 172

 Score = 110 (43.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 21/49 (42%), Positives = 32/49 (65%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
             ++ D+   RS+G+G+VTF   ++A+ A+  MNGK +DGR I VD    S
Sbjct:    37 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 85

 Score = 39 (18.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query:     2 LADAFSQFGQVTEDLV 17
             L   FS++GQ++E +V
Sbjct:    22 LEQVFSKYGQISEVVV 37


>UNIPROTKB|K7EJV5 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
        Length = 105

 Score = 110 (43.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 21/49 (42%), Positives = 32/49 (65%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
             ++ D+   RS+G+G+VTF   ++A+ A+  MNGK +DGR I VD    S
Sbjct:    37 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 85

 Score = 39 (18.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query:     2 LADAFSQFGQVTEDLV 17
             L   FS++GQ++E +V
Sbjct:    22 LEQVFSKYGQISEVVV 37


>UNIPROTKB|K7EMY9 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
        Length = 159

 Score = 110 (43.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 21/49 (42%), Positives = 32/49 (65%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
             ++ D+   RS+G+G+VTF   ++A+ A+  MNGK +DGR I VD    S
Sbjct:    37 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 85

 Score = 39 (18.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query:     2 LADAFSQFGQVTEDLV 17
             L   FS++GQ++E +V
Sbjct:    22 LEQVFSKYGQISEVVV 37


>UNIPROTKB|K7EPM4 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
            Ensembl:ENST00000586773 Ensembl:ENST00000589235
            Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
        Length = 168

 Score = 110 (43.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 21/49 (42%), Positives = 32/49 (65%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
             ++ D+   RS+G+G+VTF   ++A+ A+  MNGK +DGR I VD    S
Sbjct:    37 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 85

 Score = 39 (18.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query:     2 LADAFSQFGQVTEDLV 17
             L   FS++GQ++E +V
Sbjct:    22 LEQVFSKYGQISEVVV 37


>UNIPROTKB|K7ER40 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
        Length = 174

 Score = 110 (43.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 21/49 (42%), Positives = 32/49 (65%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
             ++ D+   RS+G+G+VTF   ++A+ A+  MNGK +DGR I VD    S
Sbjct:    37 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 85

 Score = 39 (18.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query:     2 LADAFSQFGQVTEDLV 17
             L   FS++GQ++E +V
Sbjct:    22 LEQVFSKYGQISEVVV 37


>UNIPROTKB|Q14011 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
            evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
            [GO:0030371 "translation repressor activity" evidence=ISS]
            [GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
            "response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
            granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
            3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
            translation" evidence=IDA] [GO:0009409 "response to cold"
            evidence=TAS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
            EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
            RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
            PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
            MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
            REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
            DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
            UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
            neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
            InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
            ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
            ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
            Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
        Length = 172

 Score = 110 (43.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 21/49 (42%), Positives = 32/49 (65%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
             ++ D+   RS+G+G+VTF   ++A+ A+  MNGK +DGR I VD    S
Sbjct:    37 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 85

 Score = 39 (18.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query:     2 LADAFSQFGQVTEDLV 17
             L   FS++GQ++E +V
Sbjct:    22 LEQVFSKYGQISEVVV 37


>UNIPROTKB|F1S6R1 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
            "mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
            of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
            GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
            GeneTree:ENSGT00700000104309 EMBL:CU929580
            Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
        Length = 172

 Score = 110 (43.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 21/49 (42%), Positives = 32/49 (65%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
             ++ D+   RS+G+G+VTF   ++A+ A+  MNGK +DGR I VD    S
Sbjct:    37 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 85

 Score = 39 (18.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query:     2 LADAFSQFGQVTEDLV 17
             L   FS++GQ++E +V
Sbjct:    22 LEQVFSKYGQISEVVV 37


>UNIPROTKB|P60826 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
            binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] [GO:0030371 "translation repressor activity"
            evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
            rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
            GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
            GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
            ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
            CTD:1153 Uniprot:P60826
        Length = 172

 Score = 110 (43.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 21/49 (42%), Positives = 32/49 (65%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
             ++ D+   RS+G+G+VTF   ++A+ A+  MNGK +DGR I VD    S
Sbjct:    37 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 85

 Score = 39 (18.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query:     2 LADAFSQFGQVTEDLV 17
             L   FS++GQ++E +V
Sbjct:    22 LEQVFSKYGQISEVVV 37


>UNIPROTKB|Q5RF83 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] [GO:0030371 "translation repressor activity"
            evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
            rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
            GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
            RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
            SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
            Uniprot:Q5RF83
        Length = 172

 Score = 110 (43.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 21/49 (42%), Positives = 32/49 (65%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
             ++ D+   RS+G+G+VTF   ++A+ A+  MNGK +DGR I VD    S
Sbjct:    37 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 85

 Score = 39 (18.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query:     2 LADAFSQFGQVTEDLV 17
             L   FS++GQ++E +V
Sbjct:    22 LEQVFSKYGQISEVVV 37


>MGI|MGI:893588 [details] [associations]
            symbol:Cirbp "cold inducible RNA binding protein"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
            binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
            stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
            [GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
            "negative regulation of translation" evidence=IDA] [GO:0030371
            "translation repressor activity" evidence=IDA] [GO:0034063 "stress
            granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
            translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
            evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
            OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
            EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
            UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
            PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
            Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
            UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
            NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
            GermOnline:ENSMUSG00000045193 Uniprot:P60824
        Length = 172

 Score = 110 (43.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 21/49 (42%), Positives = 32/49 (65%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
             ++ D+   RS+G+G+VTF   ++A+ A+  MNGK +DGR I VD    S
Sbjct:    37 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 85

 Score = 39 (18.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query:     2 LADAFSQFGQVTEDLV 17
             L   FS++GQ++E +V
Sbjct:    22 LEQVFSKYGQISEVVV 37


>RGD|620756 [details] [associations]
            symbol:Cirbp "cold inducible RNA binding protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
            "nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
            cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
            [GO:0017148 "negative regulation of translation" evidence=ISO]
            [GO:0030371 "translation repressor activity" evidence=ISO;ISS]
            [GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
            "positive regulation of translation" evidence=ISO;ISS] [GO:0048255
            "mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
            binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
            HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
            IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
            SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
            Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
            Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
        Length = 172

 Score = 110 (43.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 21/49 (42%), Positives = 32/49 (65%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
             ++ D+   RS+G+G+VTF   ++A+ A+  MNGK +DGR I VD    S
Sbjct:    37 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 85

 Score = 39 (18.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query:     2 LADAFSQFGQVTEDLV 17
             L   FS++GQ++E +V
Sbjct:    22 LEQVFSKYGQISEVVV 37


>UNIPROTKB|F6XHA7 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
            OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
            EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
            Uniprot:F6XHA7
        Length = 185

 Score = 110 (43.8 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
 Identities = 21/49 (42%), Positives = 32/49 (65%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
             ++ D+   RS+G+G+VTF   ++A+ A+  MNGK +DGR I VD    S
Sbjct:    37 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 85

 Score = 39 (18.8 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query:     2 LADAFSQFGQVTEDLV 17
             L   FS++GQ++E +V
Sbjct:    22 LEQVFSKYGQISEVVV 37


>UNIPROTKB|Q60A61 [details] [associations]
            symbol:MCA1010 "RNA-binding protein" species:243233
            "Methylococcus capsulatus str. Bath" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
            GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
            ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
            PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
        Length = 95

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 23/54 (42%), Positives = 38/54 (70%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
             +A ++MD+   RS+G+G+V   +++EAQ A+A +NGK +DGR + V+  RP  R
Sbjct:    31 SAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAGLNGKEMDGRNLMVNEARPPER 84


>UNIPROTKB|H9KZV5 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
            "mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
            [GO:0045727 "positive regulation of translation" evidence=IEA]
            [GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
            rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
        Length = 190

 Score = 110 (43.8 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
 Identities = 21/49 (42%), Positives = 32/49 (65%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
             ++ D+   RS+G+G+VTF   ++A+ A+  MNGK +DGR I VD    S
Sbjct:    37 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 85

 Score = 39 (18.8 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query:     2 LADAFSQFGQVTEDLV 17
             L   FS++GQ++E +V
Sbjct:    22 LEQVFSKYGQISEVVV 37


>UNIPROTKB|Q43472 [details] [associations]
            symbol:blt801 "Glycine-rich RNA-binding protein blt801"
            species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
            binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
            [GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
            to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
            EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
            Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
        Length = 161

 Score = 113 (44.8 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
 Identities = 24/51 (47%), Positives = 37/51 (72%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
             II D+   RS+G+G+VTF+++E  ++A+  MNG+ LDGR I V+  + SRR
Sbjct:    37 IITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQ-SRR 86

 Score = 34 (17.0 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
 Identities = 6/16 (37%), Positives = 11/16 (68%)

Query:     2 LADAFSQFGQVTEDLV 17
             L +AFS++G V +  +
Sbjct:    22 LQNAFSKYGDVIDSKI 37


>UNIPROTKB|O93235 [details] [associations]
            symbol:cirbp-a "Cold-inducible RNA-binding protein A"
            species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
            "response to cold" evidence=IEP] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
            "cell migration" evidence=IMP] [GO:0017148 "negative regulation of
            translation" evidence=ISS] [GO:0019899 "enzyme binding"
            evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
            "translation repressor activity" evidence=ISS] [GO:0034063 "stress
            granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
            translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
            evidence=ISS] [GO:0048793 "pronephros development"
            evidence=IEP;IMP] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            [GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
            field specification" evidence=IMP] [GO:0005840 "ribosome"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
            GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
            GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
            EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
            ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
            CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
            GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
        Length = 166

 Score = 111 (44.1 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
 Identities = 21/49 (42%), Positives = 32/49 (65%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
             ++ D+   RS+G+G+VTF   ++A+ A+  MNGK +DGR I VD    S
Sbjct:    36 VVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQAGKS 84

 Score = 36 (17.7 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
 Identities = 6/16 (37%), Positives = 13/16 (81%)

Query:     2 LADAFSQFGQVTEDLV 17
             L  AF+++G+++E +V
Sbjct:    21 LEQAFTKYGRISEVVV 36


>TAIR|locus:2119495 [details] [associations]
            symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
            "mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
            evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
            evidence=IDA] [GO:0003697 "single-stranded DNA binding"
            evidence=IDA] [GO:0009414 "response to water deprivation"
            evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
            "RNA binding transcription antitermination factor activity"
            evidence=IDA] [GO:0006970 "response to osmotic stress"
            evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
            [GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
            "seed germination" evidence=IMP] [GO:0031564 "transcription
            antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
            evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
            [GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
            GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
            eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
            EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
            EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
            RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
            ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
            PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
            GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
            InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
            Genevestigator:Q9SVM8 Uniprot:Q9SVM8
        Length = 158

 Score = 109 (43.4 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
 Identities = 24/53 (45%), Positives = 37/53 (69%)

Query:    42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPS 92
             A +I+D+   RS+G+G+V F+ E  A  A+++M+GK L+GR I V+  N RPS
Sbjct:    64 AKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPS 116

 Score = 38 (18.4 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
 Identities = 7/13 (53%), Positives = 9/13 (69%)

Query:     2 LADAFSQFGQVTE 14
             L DAF+ FG V +
Sbjct:    51 LRDAFAHFGDVVD 63


>UNIPROTKB|E2R228 [details] [associations]
            symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
            Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
        Length = 149

 Score = 107 (42.7 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
 Identities = 20/45 (44%), Positives = 30/45 (66%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 88
             ++ D+   RS+G+ ++TF+  E A  A+  MNGK LDGR I VD+
Sbjct:    37 VVKDRETQRSRGFCFITFTNPEHASDAMRPMNGKSLDGRQIRVDH 81

 Score = 39 (18.8 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query:     2 LADAFSQFGQVTEDLV 17
             L D FS FG ++E +V
Sbjct:    22 LEDHFSSFGPISEVVV 37


>UNIPROTKB|K7EQR7 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
        Length = 202

 Score = 110 (43.8 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
 Identities = 21/49 (42%), Positives = 32/49 (65%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
             ++ D+   RS+G+G+VTF   ++A+ A+  MNGK +DGR I VD    S
Sbjct:    37 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 85

 Score = 39 (18.8 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query:     2 LADAFSQFGQVTEDLV 17
             L   FS++GQ++E +V
Sbjct:    22 LEQVFSKYGQISEVVV 37


>UNIPROTKB|H0YCC8 [details] [associations]
            symbol:PABPC4 "Polyadenylate-binding protein 4"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
            Ensembl:ENST00000474378 Uniprot:H0YCC8
        Length = 197

 Score = 115 (45.5 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
 Identities = 23/63 (36%), Positives = 38/63 (60%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M     +SKG+G+V++   E+A KA+ +MNGK + G++IFV   R  ++    A L R+
Sbjct:   135 VMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG--RAQKKVERQAELKRK 192

Query:   105 SAQ 107
               Q
Sbjct:   193 FEQ 195

 Score = 105 (42.0 bits), Expect = 8.9e-06, P = 8.9e-06
 Identities = 24/58 (41%), Positives = 36/58 (62%)

Query:    50 KNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQSAQ 107
             +N SKGY +V F T+E A KA+  MNG LL+ R +FV   + SR+   +A L  ++ +
Sbjct:    47 ENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK-SRK-EREAELGAKAKE 102

 Score = 32 (16.3 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query:     2 LADAFSQFGQ 11
             L + FSQFG+
Sbjct:   120 LKELFSQFGK 129


>TAIR|locus:2119505 [details] [associations]
            symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
            UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
            ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
            EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
            TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
            Genevestigator:Q6ID29 Uniprot:Q6ID29
        Length = 87

 Score = 104 (41.7 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
 Identities = 19/45 (42%), Positives = 34/45 (75%)

Query:    42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
             A ++ D+  +RS+G+G+VT+S+  EA+ A++ M+GK L+GR + V
Sbjct:    32 AIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNGRRVSV 76

 Score = 41 (19.5 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query:     1 MLADAFSQFGQVTEDLV 17
             ML +AFS +G V + +V
Sbjct:    18 MLREAFSGYGNVVDAIV 34


>UNIPROTKB|Q3SZN4 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
            "mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
            of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
            GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
            HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
            GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
            IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
            Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
            InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
        Length = 213

 Score = 110 (43.8 bits), Expect = 7.7e-09, Sum P(2) = 7.7e-09
 Identities = 21/49 (42%), Positives = 32/49 (65%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
             ++ D+   RS+G+G+VTF   ++A+ A+  MNGK +DGR I VD    S
Sbjct:    37 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 85

 Score = 39 (18.8 bits), Expect = 7.7e-09, Sum P(2) = 7.7e-09
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query:     2 LADAFSQFGQVTEDLV 17
             L   FS++GQ++E +V
Sbjct:    22 LEQVFSKYGQISEVVV 37


>UNIPROTKB|Q98SP8 [details] [associations]
            symbol:epabp-a "Embryonic polyadenylate-binding protein A"
            species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
            "poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
            initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
            embryonic development" evidence=IEP] [GO:0043621 "protein
            self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
            evidence=IDA] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
            GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
            HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
            RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
            SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
            Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
        Length = 629

 Score = 129 (50.5 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
 Identities = 27/68 (39%), Positives = 44/68 (64%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLAR 103
             ++MD    RS+G+G+V +   EEAQKA+++MNGK ++GR+I+V   R  +R    + L R
Sbjct:   222 VMMDDS-GRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVG--RAQKRIERQSELKR 278

Query:   104 QSAQSPEE 111
             +  Q  +E
Sbjct:   279 KFEQIKQE 286

 Score = 103 (41.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
 Identities = 22/56 (39%), Positives = 36/56 (64%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
             + +  ++ D+  + S+GYG+V F T E A +A+  MNG LL+ R +FV + + SRR
Sbjct:   125 ILSCKVVCDE--HGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFK-SRR 177

 Score = 100 (40.3 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
 Identities = 23/63 (36%), Positives = 37/63 (58%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M +G   SKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A L  Q
Sbjct:   325 VMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV--ALAQRKEERKAILTNQ 381

Query:   105 SAQ 107
               Q
Sbjct:   382 YMQ 384

 Score = 32 (16.3 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   115 LYDTFSAFGNI 125


>UNIPROTKB|B4E2X2 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
            UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
            SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
            Uniprot:B4E2X2
        Length = 263

 Score = 109 (43.4 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
             ++ D+   RS+G+G+VTF   ++A+ A+  MNGK +DGR I VD
Sbjct:    37 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 80

 Score = 39 (18.8 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query:     2 LADAFSQFGQVTEDLV 17
             L   FS++GQ++E +V
Sbjct:    22 LEQVFSKYGQISEVVV 37


>UNIPROTKB|Q6GR16 [details] [associations]
            symbol:epabp-b "Embryonic polyadenylate-binding protein B"
            species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
            [GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
            "eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
            "chordate embryonic development" evidence=ISS] [GO:0043621 "protein
            self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
            evidence=ISS] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
            GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
            GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
            RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
            SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
            Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
        Length = 629

 Score = 127 (49.8 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
 Identities = 26/68 (38%), Positives = 42/68 (61%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLAR 103
             ++MD    RS+G+G+V +   EEAQKA+ +MNGK ++GR+++V   R  +R      L R
Sbjct:   222 VMMDNS-GRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVG--RAQKRIERQGELKR 278

Query:   104 QSAQSPEE 111
             +  Q  +E
Sbjct:   279 KFEQIKQE 286

 Score = 103 (41.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
 Identities = 21/42 (50%), Positives = 30/42 (71%)

Query:    53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
             S+GYG+V F T+E A +A+  MNG LL+ R +FV + + SRR
Sbjct:   137 SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFK-SRR 177

 Score = 103 (41.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
 Identities = 24/66 (36%), Positives = 39/66 (59%)

Query:    42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPL 101
             +T +M +G   SKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A L
Sbjct:   322 STKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV--ALAQRKEERKAIL 378

Query:   102 ARQSAQ 107
               Q  Q
Sbjct:   379 TNQYMQ 384

 Score = 32 (16.3 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   115 LYDTFSAFGDI 125


>UNIPROTKB|Q6DEY7 [details] [associations]
            symbol:epabp "Embryonic polyadenylate-binding protein"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
            evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
            evidence=ISS] [GO:0043009 "chordate embryonic development"
            evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
            "negative regulation of nuclear-transcribed mRNA poly(A) tail
            shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
            eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
            KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
            ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
            GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
            HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
            Uniprot:Q6DEY7
        Length = 629

 Score = 127 (49.8 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
 Identities = 27/68 (39%), Positives = 43/68 (63%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLAR 103
             ++MD    RS+G+G+V +   EEAQKA+++MNGK ++GR+I+V   R  +R      L R
Sbjct:   222 VMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVG--RAQKRIERQGELKR 278

Query:   104 QSAQSPEE 111
             +  Q  +E
Sbjct:   279 KFEQIKQE 286

 Score = 105 (42.0 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
 Identities = 22/56 (39%), Positives = 37/56 (66%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
             + +  ++ D+  + S+GYG+V F T+E A +A+  MNG LL+ R +FV + + SRR
Sbjct:   125 ILSCKVVCDE--HGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFK-SRR 177

 Score = 100 (40.3 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
 Identities = 23/63 (36%), Positives = 37/63 (58%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M +G   SKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A L  Q
Sbjct:   325 VMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV--ALAQRKEERKAILTNQ 381

Query:   105 SAQ 107
               Q
Sbjct:   382 YMQ 384

 Score = 32 (16.3 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   115 LYDTFSAFGNI 125


>UNIPROTKB|D6W5Y5 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
            UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
            HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
            PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
            Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
            Bgee:D6W5Y5 Uniprot:D6W5Y5
        Length = 297

 Score = 110 (43.8 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
 Identities = 21/49 (42%), Positives = 32/49 (65%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
             ++ D+   RS+G+G+VTF   ++A+ A+  MNGK +DGR I VD    S
Sbjct:    37 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 85

 Score = 39 (18.8 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query:     2 LADAFSQFGQVTEDLV 17
             L   FS++GQ++E +V
Sbjct:    22 LEQVFSKYGQISEVVV 37


>TAIR|locus:2049359 [details] [associations]
            symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
            evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
            "double-stranded DNA binding" evidence=IDA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
            to cold" evidence=IGI;IEP] [GO:0009414 "response to water
            deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
            evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
            evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
            evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
            [GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
            "peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
            evidence=IMP] [GO:0006970 "response to osmotic stress"
            evidence=IMP] [GO:0010119 "regulation of stomatal movement"
            evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
            "vegetative to reproductive phase transition of meristem"
            evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
            evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
            "gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
            evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
            [GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
            "Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
            evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
            stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
            spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
            GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
            GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
            GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
            GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
            EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
            EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
            EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
            IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
            UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
            MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
            ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
            KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
            ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
        Length = 176

 Score = 103 (41.3 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
 Identities = 21/47 (44%), Positives = 31/47 (65%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 90
             II D+   RS+G+G+VTF  E+  + A+  MNG+ LDGR I V+  +
Sbjct:    39 IINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQ 85

 Score = 33 (16.7 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
 Identities = 6/16 (37%), Positives = 10/16 (62%)

Query:     2 LADAFSQFGQVTEDLV 17
             L  AF+Q+G V +  +
Sbjct:    24 LETAFAQYGDVIDSKI 39


>UNIPROTKB|F1SDR6 [details] [associations]
            symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
            EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
        Length = 608

 Score = 117 (46.2 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
 Identities = 24/67 (35%), Positives = 38/67 (56%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M      S+G+G+V F   E+AQKA+ DMNGK + GR+++V   R  +R      L R+
Sbjct:   222 VMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVG--RAQKRVERQNELKRR 279

Query:   105 SAQSPEE 111
               Q  ++
Sbjct:   280 FEQMKQD 286

 Score = 101 (40.6 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
 Identities = 23/55 (41%), Positives = 35/55 (63%)

Query:    53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQSAQ 107
             S+G+G+V F T E AQ A+  MNG LL+ R +FV + + SRR   +A L  ++ +
Sbjct:   137 SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFK-SRR-EREAELGARALE 189

 Score = 99 (39.9 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
 Identities = 23/63 (36%), Positives = 37/63 (58%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M +G   SKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A L  Q
Sbjct:   325 VMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV--ALAQRKEERKAILTNQ 381

Query:   105 SAQ 107
               Q
Sbjct:   382 YIQ 384

 Score = 39 (18.8 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
 Identities = 7/11 (63%), Positives = 9/11 (81%)

Query:     2 LADAFSQFGQV 12
             L D FSQFG++
Sbjct:   207 LQDLFSQFGKI 217

 Score = 32 (16.3 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   115 LYDTFSTFGNI 125


>TAIR|locus:2027438 [details] [associations]
            symbol:GR-RBP6 "glycine-rich RNA-binding protein 6"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0009651 "response to salt stress"
            evidence=IEP] [GO:0005768 "endosome" evidence=IDA] [GO:0005794
            "Golgi apparatus" evidence=IDA] [GO:0005802 "trans-Golgi network"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0005794
            GO:GO:0000166 GO:GO:0005768 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0005802 HSSP:P09651 EMBL:AC026238 EMBL:BT005999 EMBL:AK227482
            EMBL:AY085358 IPI:IPI00537929 PIR:A86320 RefSeq:NP_173298.1
            UniGene:At.356 UniGene:At.41785 ProteinModelPortal:Q9FZ84
            SMR:Q9FZ84 IntAct:Q9FZ84 PaxDb:Q8LEL7 PRIDE:Q9FZ84
            EnsemblPlants:AT1G18630.1 GeneID:838444 KEGG:ath:AT1G18630
            GeneFarm:3974 TAIR:At1g18630 eggNOG:NOG255734 InParanoid:Q9FZ84
            OMA:IFRQPRA PhylomeDB:Q9FZ84 ProtClustDB:CLSN2914186
            Genevestigator:Q9FZ84 Uniprot:Q9FZ84
        Length = 155

 Score = 96 (38.9 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
 Identities = 18/45 (40%), Positives = 29/45 (64%)

Query:    42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
             A +++D+    S+G+G+VT+ + E A  A+  M  K LDGR+I V
Sbjct:    65 AVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRIIGV 109

 Score = 38 (18.4 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
 Identities = 6/17 (35%), Positives = 12/17 (70%)

Query:     1 MLADAFSQFGQVTEDLV 17
             +L +AF  FG++ + +V
Sbjct:    51 LLKEAFGSFGKIVDAVV 67


>TAIR|locus:2032120 [details] [associations]
            symbol:AT1G78260 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            HSSP:P09651 HOGENOM:HOG000276232 eggNOG:NOG248750 EMBL:AY084982
            EMBL:BT030002 IPI:IPI00529893 RefSeq:NP_565175.1 UniGene:At.43623
            ProteinModelPortal:Q8LF90 SMR:Q8LF90 STRING:Q8LF90
            EnsemblPlants:AT1G78260.1 GeneID:844161 KEGG:ath:AT1G78260
            TAIR:At1g78260 InParanoid:Q8LF90 OMA:SPYYYGY PhylomeDB:Q8LF90
            ProtClustDB:CLSN2689288 Genevestigator:Q8LF90 Uniprot:Q8LF90
        Length = 287

 Score = 110 (43.8 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
 Identities = 27/73 (36%), Positives = 37/73 (50%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             +  A II DK   +SKGYG+VTF   + A +A+AD N  ++DGR     N+    R    
Sbjct:    43 ILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPN-PVIDGRKANC-NIASFGRPRPS 100

Query:    99 APLARQSAQSPEE 111
              P  R    SP +
Sbjct:   101 PPRGRGQTGSPSQ 113

 Score = 34 (17.0 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
 Identities = 5/12 (41%), Positives = 9/12 (75%)

Query:     6 FSQFGQVTEDLV 17
             F QFG++ E ++
Sbjct:    37 FEQFGEILEAVI 48


>UNIPROTKB|E2RND1 [details] [associations]
            symbol:PABPC1L "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
            EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
        Length = 644

 Score = 121 (47.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
 Identities = 25/67 (37%), Positives = 39/67 (58%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M      S+G+G+V F   EEAQKA+ DMNGK + GR+++V   R  +R    + L R+
Sbjct:   222 VMRDDSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVG--RAQKRVERQSELKRR 279

Query:   105 SAQSPEE 111
               Q  ++
Sbjct:   280 FEQLKQD 286

 Score = 102 (41.0 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
 Identities = 24/63 (38%), Positives = 37/63 (58%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M +G   SKG+G+V FS+ EEA KA+ +MNG++L  + ++V      R+    A L  Q
Sbjct:   325 VMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYV--ALAQRKEERKAILTNQ 381

Query:   105 SAQ 107
               Q
Sbjct:   382 YMQ 384

 Score = 102 (41.0 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
 Identities = 21/42 (50%), Positives = 30/42 (71%)

Query:    53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
             S+G+G+V F T E AQ+A+  MNG LL+ R +FV + + SRR
Sbjct:   137 SRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFK-SRR 177

 Score = 33 (16.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
 Identities = 6/11 (54%), Positives = 9/11 (81%)

Query:     2 LADAFSQFGQV 12
             L D FS+FG++
Sbjct:   207 LQDLFSRFGKM 217

 Score = 32 (16.3 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   115 LYDTFSTFGNI 125


>TAIR|locus:2077427 [details] [associations]
            symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
            HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
            EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
            ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
            GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
            OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
            Genevestigator:Q9SFB4 Uniprot:Q9SFB4
        Length = 143

 Score = 86 (35.3 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
 Identities = 19/39 (48%), Positives = 25/39 (64%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGR 82
             I  DKG  RS+G+G+V F+ E +A  A   M+GK L GR
Sbjct:    72 IAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGR 110

 Score = 46 (21.3 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
 Identities = 9/13 (69%), Positives = 10/13 (76%)

Query:     2 LADAFSQFGQVTE 14
             L DAFS FG+V E
Sbjct:    57 LKDAFSSFGEVAE 69


>UNIPROTKB|E1BNB4 [details] [associations]
            symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
            EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
            Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
        Length = 618

 Score = 112 (44.5 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
 Identities = 23/67 (34%), Positives = 38/67 (56%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M      S+G+G+V F   EEAQKA+ +MNG+ + GR+++V   R  +R      L R+
Sbjct:   222 VMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVG--RAQKRVERQNELKRR 279

Query:   105 SAQSPEE 111
               Q  ++
Sbjct:   280 FEQMKQD 286

 Score = 104 (41.7 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
 Identities = 22/56 (39%), Positives = 37/56 (66%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
             + +  ++ D+  + S+G+G+V F T E AQ A++ MNG LL+ R +FV + + SRR
Sbjct:   125 ILSCKVVCDE--HGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFK-SRR 177

 Score = 99 (39.9 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
 Identities = 23/63 (36%), Positives = 37/63 (58%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M +G   SKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A L  Q
Sbjct:   325 VMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV--ALAQRKEERKAILTNQ 381

Query:   105 SAQ 107
               Q
Sbjct:   382 YMQ 384

 Score = 37 (18.1 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
 Identities = 7/11 (63%), Positives = 9/11 (81%)

Query:     2 LADAFSQFGQV 12
             L D FSQFG++
Sbjct:   207 LQDLFSQFGKM 217

 Score = 34 (17.0 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query:    90 RPSRRYNTDAPLARQSAQS 108
             RPS  Y   A + R +A S
Sbjct:   439 RPSSAYPPGASVVRPAAMS 457

 Score = 32 (16.3 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   115 LYDTFSTFGNI 125


>UNIPROTKB|Q6IP09 [details] [associations]
            symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
            species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
            [GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
            "eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
            "protein self-association" evidence=ISS] [GO:0048255 "mRNA
            stabilization" evidence=ISS] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
            GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
            GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
            UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
            GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
            Uniprot:Q6IP09
        Length = 633

 Score = 121 (47.7 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
 Identities = 25/67 (37%), Positives = 40/67 (59%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M     +S+G+G+V+F   E+AQKA+ DMNGK L+G+ IFV   R  ++      L R+
Sbjct:   222 VMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVG--RAQKKVERQTELKRK 279

Query:   105 SAQSPEE 111
               Q  ++
Sbjct:   280 FEQMKQD 286

 Score = 111 (44.1 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
 Identities = 25/69 (36%), Positives = 43/69 (62%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             + +  ++ D+  N SKGYG+V F T+E A++A+  MNG LL+ R +FV   + SR+   +
Sbjct:   125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFK-SRK-ERE 180

Query:    99 APLARQSAQ 107
             A L  ++ +
Sbjct:   181 AELGARAKE 189

 Score = 108 (43.1 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
 Identities = 25/67 (37%), Positives = 41/67 (61%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A ++M+ G  RSKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A 
Sbjct:   322 SAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV--ALAQRKEERQAH 377

Query:   101 LARQSAQ 107
             L  Q  Q
Sbjct:   378 LTNQYMQ 384

 Score = 32 (16.3 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   115 LYDTFSAFGNI 125


>TAIR|locus:2088756 [details] [associations]
            symbol:AT3G20930 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0000023 "maltose
            metabolic process" evidence=RCA] [GO:0010027 "thylakoid membrane
            organization" evidence=RCA] [GO:0019252 "starch biosynthetic
            process" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 HSSP:Q9V535 eggNOG:COG0724 EMBL:AY099828
            EMBL:AY084565 EMBL:BT002195 IPI:IPI00537313 RefSeq:NP_566672.1
            UniGene:At.43817 ProteinModelPortal:Q8L440 SMR:Q8L440 PRIDE:Q8L440
            EnsemblPlants:AT3G20930.1 GeneID:821642 KEGG:ath:AT3G20930
            TAIR:At3g20930 InParanoid:Q8L440 OMA:KAQMVDH PhylomeDB:Q8L440
            ProtClustDB:CLSN2688611 ArrayExpress:Q8L440 Genevestigator:Q8L440
            Uniprot:Q8L440
        Length = 374

 Score = 127 (49.8 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 29/64 (45%), Positives = 40/64 (62%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSRRYN 96
             L    IIMDK   RSKGY ++ ++TEE A  AL +MNGK+++G +I VD    +P R+ N
Sbjct:   308 LVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKIINGWMIVVDVAKTKPFRQ-N 366

Query:    97 TDAP 100
                P
Sbjct:   367 RSQP 370


>UNIPROTKB|H0Y5F5 [details] [associations]
            symbol:PABPC4 "Polyadenylate-binding protein 4"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
            Ensembl:ENST00000421687 Uniprot:H0Y5F5
        Length = 550

 Score = 119 (46.9 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
 Identities = 24/67 (35%), Positives = 40/67 (59%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M     +SKG+G+V++   E+A KA+ +MNGK + G++IFV   R  ++    A L R+
Sbjct:   124 VMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG--RAQKKVERQAELKRK 181

Query:   105 SAQSPEE 111
               Q  +E
Sbjct:   182 FEQLKQE 188

 Score = 108 (43.1 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
 Identities = 24/67 (35%), Positives = 41/67 (61%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A ++++ G  RSKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A 
Sbjct:   224 SAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV--ALAQRKEERKAH 279

Query:   101 LARQSAQ 107
             L  Q  Q
Sbjct:   280 LTNQYMQ 286

 Score = 107 (42.7 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
 Identities = 25/69 (36%), Positives = 41/69 (59%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             + +  ++ D+  N SKGY +V F T+E A KA+  MNG LL+ R +FV   + SR+   +
Sbjct:    27 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK-SRK-ERE 82

Query:    99 APLARQSAQ 107
             A L  ++ +
Sbjct:    83 AELGAKAKE 91

 Score = 32 (16.3 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query:     2 LADAFSQFGQ 11
             L + FSQFG+
Sbjct:   109 LKELFSQFGK 118

 Score = 32 (16.3 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:    17 LYDTFSAFGNI 27


>TAIR|locus:2006998 [details] [associations]
            symbol:AT1G33470 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005576 "extracellular region" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 EMBL:AK176398 IPI:IPI00533784
            RefSeq:NP_174613.2 UniGene:At.17522 UniGene:At.67846
            ProteinModelPortal:Q67YS0 SMR:Q67YS0 PaxDb:Q67YS0 PRIDE:Q67YS0
            EnsemblPlants:AT1G33470.1 GeneID:840240 KEGG:ath:AT1G33470
            TAIR:At1g33470 InParanoid:Q67YS0 OMA:GAQYPFY PhylomeDB:Q67YS0
            ProtClustDB:CLSN2680737 ArrayExpress:Q67YS0 Genevestigator:Q67YS0
            Uniprot:Q67YS0
        Length = 245

 Score = 104 (41.7 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
 Identities = 22/41 (53%), Positives = 26/41 (63%)

Query:    42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGR 82
             A +I DK   RSKGYG+VTF   E AQKA  D    ++DGR
Sbjct:    36 AVVITDKSSGRSKGYGFVTFCDPEAAQKACVDP-APVIDGR 75

 Score = 36 (17.7 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query:     2 LADAFSQFGQVTEDLV 17
             L + F QFG + E +V
Sbjct:    23 LRNYFEQFGDIVEAVV 38


>CGD|CAL0005232 [details] [associations]
            symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
            "nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
            [GO:0044011 "single-species biofilm formation on inanimate
            substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0003697 "single-stranded DNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
            eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
            ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
            GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
            Uniprot:Q5AB84
        Length = 400

 Score = 127 (49.8 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 28/74 (37%), Positives = 44/74 (59%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRP-SRRY 95
             +  A +IM++   +S+GYGYV F ++  A+KAL +M GK +DGR I +D    +P + + 
Sbjct:   194 VIGARVIMERATGKSRGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASKS 253

Query:    96 NTDAPLARQSAQSP 109
             N D       +QSP
Sbjct:   254 NNDRAKQYGDSQSP 267


>UNIPROTKB|Q5AB84 [details] [associations]
            symbol:NSR1 "Potential nuclear localization sequence
            binding protein Nsr1p" species:237561 "Candida albicans SC5314"
            [GO:0044011 "single-species biofilm formation on inanimate
            substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
            EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
            RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
            STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
            KEGG:cal:CaO19.6090 Uniprot:Q5AB84
        Length = 400

 Score = 127 (49.8 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 28/74 (37%), Positives = 44/74 (59%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRP-SRRY 95
             +  A +IM++   +S+GYGYV F ++  A+KAL +M GK +DGR I +D    +P + + 
Sbjct:   194 VIGARVIMERATGKSRGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASKS 253

Query:    96 NTDAPLARQSAQSP 109
             N D       +QSP
Sbjct:   254 NNDRAKQYGDSQSP 267


>UNIPROTKB|H3BPI5 [details] [associations]
            symbol:PABPC3 "Polyadenylate-binding protein 3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
            Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
        Length = 255

 Score = 123 (48.4 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 27/71 (38%), Positives = 44/71 (61%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             + +  ++ D+  N SKGYG+V F T E A++A+  MNG LL+GR +FV   + SR+   +
Sbjct:   125 ILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFK-SRK-ERE 180

Query:    99 APLARQSAQSP 109
             A L  ++ + P
Sbjct:   181 AELGARAKEFP 191

 Score = 91 (37.1 bits), Expect = 0.00066, P = 0.00066
 Identities = 16/33 (48%), Positives = 24/33 (72%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGK 77
             +M     +SKG+G+V+F   E+AQKA+ +MNGK
Sbjct:   222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK 254


>UNIPROTKB|Q74DJ2 [details] [associations]
            symbol:GSU1324 "RNA-binding protein" species:243231
            "Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
            HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
            GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
            ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
            Uniprot:Q74DJ2
        Length = 107

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 27/57 (47%), Positives = 34/57 (59%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             II D    RSKG GYV   TEEEA++A+  ++G LL  RVI V   RP ++    AP
Sbjct:    34 IITDPETGRSKGCGYVRMLTEEEAKEAIETLDGALLRNRVITVSVARPQKQATRPAP 90


>TIGR_CMR|GSU_1324 [details] [associations]
            symbol:GSU_1324 "RNA-binding protein" species:243231
            "Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
            HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
            GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
            ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
            Uniprot:Q74DJ2
        Length = 107

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 27/57 (47%), Positives = 34/57 (59%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             II D    RSKG GYV   TEEEA++A+  ++G LL  RVI V   RP ++    AP
Sbjct:    34 IITDPETGRSKGCGYVRMLTEEEAKEAIETLDGALLRNRVITVSVARPQKQATRPAP 90


>UNIPROTKB|E2R9I0 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
            [GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
            EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
            Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
        Length = 631

 Score = 120 (47.3 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
 Identities = 25/67 (37%), Positives = 40/67 (59%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M     +SKG+G+V++   E+A KA+ +MNGK + G+VIFV   R  ++    A L R+
Sbjct:   222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG--RAQKKVERQAELKRK 279

Query:   105 SAQSPEE 111
               Q  +E
Sbjct:   280 FEQLKQE 286

 Score = 108 (43.1 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
 Identities = 24/67 (35%), Positives = 41/67 (61%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A ++++ G  RSKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A 
Sbjct:   322 SAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV--ALAQRKEERKAH 377

Query:   101 LARQSAQ 107
             L  Q  Q
Sbjct:   378 LTNQYMQ 384

 Score = 107 (42.7 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
 Identities = 25/69 (36%), Positives = 41/69 (59%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             + +  ++ D+  N SKGY +V F T+E A KA+  MNG LL+ R +FV   + SR+   +
Sbjct:   125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK-SRK-ERE 180

Query:    99 APLARQSAQ 107
             A L  ++ +
Sbjct:   181 AELGAKAKE 189

 Score = 32 (16.3 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query:     2 LADAFSQFGQ 11
             L + FSQFG+
Sbjct:   207 LKELFSQFGK 216

 Score = 32 (16.3 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   115 LYDTFSAFGNI 125


>UNIPROTKB|F1SV06 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
            [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
            "poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
            GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
            GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
            EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
        Length = 631

 Score = 120 (47.3 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
 Identities = 25/67 (37%), Positives = 40/67 (59%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M     +SKG+G+V++   E+A KA+ +MNGK + G+VIFV   R  ++    A L R+
Sbjct:   222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG--RAQKKVERQAELKRK 279

Query:   105 SAQSPEE 111
               Q  +E
Sbjct:   280 FEQLKQE 286

 Score = 108 (43.1 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
 Identities = 24/67 (35%), Positives = 41/67 (61%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A ++++ G  RSKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A 
Sbjct:   322 SAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV--ALAQRKEERKAH 377

Query:   101 LARQSAQ 107
             L  Q  Q
Sbjct:   378 LTNQYMQ 384

 Score = 107 (42.7 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
 Identities = 25/69 (36%), Positives = 41/69 (59%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             + +  ++ D+  N SKGY +V F T+E A KA+  MNG LL+ R +FV   + SR+   +
Sbjct:   125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK-SRK-ERE 180

Query:    99 APLARQSAQ 107
             A L  ++ +
Sbjct:   181 AELGAKAKE 189

 Score = 32 (16.3 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query:     2 LADAFSQFGQ 11
             L + FSQFG+
Sbjct:   207 LKELFSQFGK 216

 Score = 32 (16.3 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   115 LYDTFSAFGNI 125


>UNIPROTKB|B1ANR0 [details] [associations]
            symbol:PABPC4 "Polyadenylate-binding protein 4"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
            EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
            HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
            UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
            SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
        Length = 615

 Score = 119 (46.9 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
 Identities = 24/67 (35%), Positives = 40/67 (59%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M     +SKG+G+V++   E+A KA+ +MNGK + G++IFV   R  ++    A L R+
Sbjct:   222 VMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG--RAQKKVERQAELKRK 279

Query:   105 SAQSPEE 111
               Q  +E
Sbjct:   280 FEQLKQE 286

 Score = 108 (43.1 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
 Identities = 24/67 (35%), Positives = 41/67 (61%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A ++++ G  RSKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A 
Sbjct:   322 SAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV--ALAQRKEERKAH 377

Query:   101 LARQSAQ 107
             L  Q  Q
Sbjct:   378 LTNQYMQ 384

 Score = 107 (42.7 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
 Identities = 25/69 (36%), Positives = 41/69 (59%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             + +  ++ D+  N SKGY +V F T+E A KA+  MNG LL+ R +FV   + SR+   +
Sbjct:   125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK-SRK-ERE 180

Query:    99 APLARQSAQ 107
             A L  ++ +
Sbjct:   181 AELGAKAKE 189

 Score = 32 (16.3 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query:     2 LADAFSQFGQ 11
             L + FSQFG+
Sbjct:   207 LKELFSQFGK 216

 Score = 32 (16.3 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   115 LYDTFSAFGNI 125


>UNIPROTKB|E1C903 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
            binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
            EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
            UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
            Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
            NextBio:20822696 Uniprot:E1C903
        Length = 630

 Score = 119 (46.9 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
 Identities = 24/67 (35%), Positives = 41/67 (61%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M     +SKG+G+V+F   E+A KA+ +MNGK ++G+++FV   R  ++    A L R+
Sbjct:   222 VMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVG--RAQKKVERQAELKRR 279

Query:   105 SAQSPEE 111
               Q  +E
Sbjct:   280 FEQLKQE 286

 Score = 108 (43.1 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
 Identities = 24/67 (35%), Positives = 41/67 (61%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A ++++ G  RSKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A 
Sbjct:   322 SAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV--ALAQRKEERKAH 377

Query:   101 LARQSAQ 107
             L  Q  Q
Sbjct:   378 LTNQYMQ 384

 Score = 101 (40.6 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
 Identities = 23/69 (33%), Positives = 41/69 (59%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             + +  ++ D+  N SKGY +V F T++ A +A+  MNG LL+ R +FV   + SR+   +
Sbjct:   125 ILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFK-SRK-ERE 180

Query:    99 APLARQSAQ 107
             A L  ++ +
Sbjct:   181 AELGAKAKE 189

 Score = 32 (16.3 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   115 LYDTFSAFGNI 125


>UNIPROTKB|E2R9I1 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
            InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
            Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
        Length = 700

 Score = 120 (47.3 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
 Identities = 25/67 (37%), Positives = 40/67 (59%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M     +SKG+G+V++   E+A KA+ +MNGK + G+VIFV   R  ++    A L R+
Sbjct:   262 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG--RAQKKVERQAELKRK 319

Query:   105 SAQSPEE 111
               Q  +E
Sbjct:   320 FEQLKQE 326

 Score = 108 (43.1 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
 Identities = 24/67 (35%), Positives = 41/67 (61%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A ++++ G  RSKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A 
Sbjct:   362 SAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV--ALAQRKEERKAH 417

Query:   101 LARQSAQ 107
             L  Q  Q
Sbjct:   418 LTNQYMQ 424

 Score = 107 (42.7 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
 Identities = 25/69 (36%), Positives = 41/69 (59%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             + +  ++ D+  N SKGY +V F T+E A KA+  MNG LL+ R +FV   + SR+   +
Sbjct:   165 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK-SRK-ERE 220

Query:    99 APLARQSAQ 107
             A L  ++ +
Sbjct:   221 AELGAKAKE 229

 Score = 32 (16.3 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query:     2 LADAFSQFGQ 11
             L + FSQFG+
Sbjct:   247 LKELFSQFGK 256

 Score = 32 (16.3 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   155 LYDTFSAFGNI 165


>UNIPROTKB|Q13310 [details] [associations]
            symbol:PABPC4 "Polyadenylate-binding protein 4"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
            [GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
            "cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
            binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
            evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
            [GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
            coagulation" evidence=TAS] [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
            GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
            GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
            GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
            EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
            IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
            RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
            UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
            IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
            DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
            Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
            KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
            GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
            neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
            PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
            NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
            Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
        Length = 644

 Score = 119 (46.9 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
 Identities = 24/67 (35%), Positives = 40/67 (59%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M     +SKG+G+V++   E+A KA+ +MNGK + G++IFV   R  ++    A L R+
Sbjct:   222 VMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG--RAQKKVERQAELKRK 279

Query:   105 SAQSPEE 111
               Q  +E
Sbjct:   280 FEQLKQE 286

 Score = 108 (43.1 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
 Identities = 24/67 (35%), Positives = 41/67 (61%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A ++++ G  RSKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A 
Sbjct:   322 SAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV--ALAQRKEERKAH 377

Query:   101 LARQSAQ 107
             L  Q  Q
Sbjct:   378 LTNQYMQ 384

 Score = 107 (42.7 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
 Identities = 25/69 (36%), Positives = 41/69 (59%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             + +  ++ D+  N SKGY +V F T+E A KA+  MNG LL+ R +FV   + SR+   +
Sbjct:   125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK-SRK-ERE 180

Query:    99 APLARQSAQ 107
             A L  ++ +
Sbjct:   181 AELGAKAKE 189

 Score = 32 (16.3 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query:     2 LADAFSQFGQ 11
             L + FSQFG+
Sbjct:   207 LKELFSQFGK 216

 Score = 32 (16.3 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   115 LYDTFSAFGNI 125


>UNIPROTKB|A4IFC3 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
            [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
            "poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
            GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
            eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
            OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
            IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
            Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
            InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
        Length = 645

 Score = 119 (46.9 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
 Identities = 25/67 (37%), Positives = 40/67 (59%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M     +SKG+G+V++   E+A KA+ +MNGK + G+VIFV   R  ++    A L R+
Sbjct:   222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVG--RAQKKVERQAELKRK 279

Query:   105 SAQSPEE 111
               Q  +E
Sbjct:   280 FEQLKQE 286

 Score = 108 (43.1 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
 Identities = 24/67 (35%), Positives = 41/67 (61%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A ++++ G  RSKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A 
Sbjct:   322 SAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV--ALAQRKEERKAH 377

Query:   101 LARQSAQ 107
             L  Q  Q
Sbjct:   378 LTNQYMQ 384

 Score = 107 (42.7 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
 Identities = 25/69 (36%), Positives = 41/69 (59%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             + +  ++ D+  N SKGY +V F T+E A KA+  MNG LL+ R +FV   + SR+   +
Sbjct:   125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK-SRK-ERE 180

Query:    99 APLARQSAQ 107
             A L  ++ +
Sbjct:   181 AELGAKAKE 189

 Score = 32 (16.3 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query:     2 LADAFSQFGQ 11
             L + FSQFG+
Sbjct:   207 LKELFSQFGK 216

 Score = 32 (16.3 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   115 LYDTFSAFGNI 125


>SGD|S000003391 [details] [associations]
            symbol:NSR1 "Nucleolar protein that binds nuclear
            localization sequences" species:4932 "Saccharomyces cerevisiae"
            [GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
            evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
            [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0006950 "response to stress"
            evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
            evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
            GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
            GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
            OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
            EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
            ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
            MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
            EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
            HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
            GermOnline:YGR159C Uniprot:P27476
        Length = 414

 Score = 125 (49.1 bits), Expect = 3.1e-07, P = 3.1e-07
 Identities = 27/73 (36%), Positives = 41/73 (56%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             +  A +I ++G +RS+GYGYV F  +  A+KA+ +M GK +DGR I  D        N D
Sbjct:   194 VIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNND 253

Query:    99 APLARQSAQSPEE 111
                A++   +P E
Sbjct:   254 R--AKKFGDTPSE 264


>UNIPROTKB|G4MY43 [details] [associations]
            symbol:MGG_01268 "Nuclear localization sequence binding
            protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
            ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
            KEGG:mgr:MGG_01268 Uniprot:G4MY43
        Length = 486

 Score = 126 (49.4 bits), Expect = 3.1e-07, P = 3.1e-07
 Identities = 30/76 (39%), Positives = 42/76 (55%)

Query:    33 LISDSFLFAATI-----IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
             ++++ F F  T+     I D+   RSKG+GYV F+T EEA+KA  +  G  +DGR I VD
Sbjct:   254 MLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKAHGEKQGAFIDGREIKVD 313

Query:    88 NVRPSRRYNTDAPLAR 103
                     + DA  AR
Sbjct:   314 FSTGKATNSNDAAGAR 329


>TAIR|locus:2171539 [details] [associations]
            symbol:RPS19 "ribosomal protein S19" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003735 "structural
            constituent of ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=ISM] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
            "translation" evidence=IEA;NAS] [GO:0015935 "small ribosomal
            subunit" evidence=IEA] [GO:0006354 "DNA-dependent transcription,
            elongation" evidence=RCA] [GO:0005763 "mitochondrial small
            ribosomal subunit" evidence=IDA] InterPro:IPR000504
            InterPro:IPR002222 InterPro:IPR005732 InterPro:IPR012677
            InterPro:IPR020934 InterPro:IPR023575 Pfam:PF00076 Pfam:PF00203
            PRINTS:PR00975 PROSITE:PS00323 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006412
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003735 eggNOG:COG0724
            GO:GO:0005763 EMBL:AB018117 Gene3D:3.30.860.10 HAMAP:MF_00531
            SUPFAM:SSF54570 TIGRFAMs:TIGR01050 KO:K02965 EMBL:X78035
            EMBL:X77989 EMBL:AY045963 EMBL:AY091354 EMBL:Z18203 IPI:IPI00544075
            PIR:S71114 RefSeq:NP_568681.1 UniGene:At.5396
            ProteinModelPortal:P39697 SMR:P39697 STRING:P39697 PaxDb:P39697
            PRIDE:P39697 EnsemblPlants:AT5G47320.1 GeneID:834779
            KEGG:ath:AT5G47320 GeneFarm:3993 TAIR:At5g47320 InParanoid:P39697
            PhylomeDB:P39697 Genevestigator:P39697 GermOnline:AT5G47320
            Uniprot:P39697
        Length = 212

 Score = 94 (38.1 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
 Identities = 24/71 (33%), Positives = 41/71 (57%)

Query:    42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR--PSRRYNTDA 99
             A ++ +K   RS+GYG+V F +E+ A  A++ MNG+ L+G  I V+  +  PS   + D 
Sbjct:    60 ARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAKDWPSLPLSLDE 119

Query:   100 PLARQSAQSPE 110
              +  + A+  E
Sbjct:   120 SI--EEAEKKE 128

 Score = 41 (19.5 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
 Identities = 9/13 (69%), Positives = 9/13 (69%)

Query:     2 LADAFSQFGQVTE 14
             L DAFS F  VTE
Sbjct:    47 LKDAFSSFNGVTE 59


>UNIPROTKB|H3BNY3 [details] [associations]
            symbol:PABPC3 "Polyadenylate-binding protein 3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
            HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
            Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
        Length = 347

 Score = 123 (48.4 bits), Expect = 3.7e-07, P = 3.7e-07
 Identities = 27/71 (38%), Positives = 44/71 (61%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             + +  ++ D+  N SKGYG+V F T E A++A+  MNG LL+GR +FV   + SR+   +
Sbjct:   125 ILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFK-SRK-ERE 180

Query:    99 APLARQSAQSP 109
             A L  ++ + P
Sbjct:   181 AELGARAKEFP 191

 Score = 114 (45.2 bits), Expect = 3.5e-06, P = 3.5e-06
 Identities = 24/67 (35%), Positives = 39/67 (58%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M     +SKG+G+V+F   E+AQKA+ +MNGK L+G+ I+V   R  ++      L R 
Sbjct:   222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG--RAQKKVERQTELKRT 279

Query:   105 SAQSPEE 111
               Q  ++
Sbjct:   280 FEQMKQD 286


>UNIPROTKB|H0YAP2 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519622
            Uniprot:H0YAP2
        Length = 131

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 24/67 (35%), Positives = 40/67 (59%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M     +SKG+G+V+F   E+AQKA+ +MNGK L+G+ I+V   R  ++      L R+
Sbjct:    20 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG--RAQKKVERQTELKRK 77

Query:   105 SAQSPEE 111
               Q  ++
Sbjct:    78 FEQMKQD 84


>UNIPROTKB|F1NH81 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
            EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
            Uniprot:F1NH81
        Length = 573

 Score = 116 (45.9 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
 Identities = 24/67 (35%), Positives = 40/67 (59%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M     +SKG+G+V+F   E+AQKA+ +MNGK L+G+ I+V   R  ++      L R+
Sbjct:   158 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG--RAQKKVERQTELKRK 215

Query:   105 SAQSPEE 111
               Q  ++
Sbjct:   216 FEQMKQD 222

 Score = 112 (44.5 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
 Identities = 25/69 (36%), Positives = 43/69 (62%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             + +  ++ D+  N SKGYG+V F T+E A++A+  MNG LL+ R +FV   + SR+   +
Sbjct:    61 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK-SRK-ERE 116

Query:    99 APLARQSAQ 107
             A L  ++ +
Sbjct:   117 AELGARAKE 125

 Score = 108 (43.1 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
 Identities = 25/67 (37%), Positives = 41/67 (61%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A ++M+ G  RSKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A 
Sbjct:   258 SAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV--ALAQRKEERQAH 313

Query:   101 LARQSAQ 107
             L  Q  Q
Sbjct:   314 LTNQYMQ 320

 Score = 32 (16.3 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:    51 LYDTFSAFGNI 61


>UNIPROTKB|E7EQV3 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
            ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
            ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
        Length = 591

 Score = 116 (45.9 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
 Identities = 24/67 (35%), Positives = 40/67 (59%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M     +SKG+G+V+F   E+AQKA+ +MNGK L+G+ I+V   R  ++      L R+
Sbjct:   177 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG--RAQKKVERQTELKRK 234

Query:   105 SAQSPEE 111
               Q  ++
Sbjct:   235 FEQMKQD 241

 Score = 112 (44.5 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
 Identities = 25/69 (36%), Positives = 43/69 (62%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             + +  ++ D+  N SKGYG+V F T+E A++A+  MNG LL+ R +FV   + SR+   +
Sbjct:    80 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK-SRK-ERE 135

Query:    99 APLARQSAQ 107
             A L  ++ +
Sbjct:   136 AELGARAKE 144

 Score = 108 (43.1 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
 Identities = 25/67 (37%), Positives = 41/67 (61%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A ++M+ G  RSKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A 
Sbjct:   277 SAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV--ALAQRKEERQAH 332

Query:   101 LARQSAQ 107
             L  Q  Q
Sbjct:   333 LTNQYMQ 339

 Score = 32 (16.3 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:    70 LYDTFSAFGNI 80


>UNIPROTKB|E2RQC8 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
            ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
            NextBio:20898275 Uniprot:E2RQC8
        Length = 596

 Score = 116 (45.9 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
 Identities = 24/67 (35%), Positives = 40/67 (59%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M     +SKG+G+V+F   E+AQKA+ +MNGK L+G+ I+V   R  ++      L R+
Sbjct:   222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG--RAQKKVERQTELKRK 279

Query:   105 SAQSPEE 111
               Q  ++
Sbjct:   280 FEQMKQD 286

 Score = 112 (44.5 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
 Identities = 25/69 (36%), Positives = 43/69 (62%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             + +  ++ D+  N SKGYG+V F T+E A++A+  MNG LL+ R +FV   + SR+   +
Sbjct:   125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK-SRK-ERE 180

Query:    99 APLARQSAQ 107
             A L  ++ +
Sbjct:   181 AELGARAKE 189

 Score = 32 (16.3 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   115 LYDTFSAFGNI 125


>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
            symbol:pabpc1l "poly(A) binding protein,
            cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
            HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
            UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
            GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
            Bgee:Q803E7 Uniprot:Q803E7
        Length = 620

 Score = 116 (45.9 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
 Identities = 24/67 (35%), Positives = 40/67 (59%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M   + RS+G+G+V F    +A++A+ +MNGK L+GRV++V   R  +R      L R+
Sbjct:   222 VMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVG--RAQKRLERQGELKRK 279

Query:   105 SAQSPEE 111
               Q  +E
Sbjct:   280 FEQIKQE 286

 Score = 110 (43.8 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
 Identities = 23/56 (41%), Positives = 37/56 (66%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
             + +  ++ D+  N SKGYG+V F T+E A +A+  MNG LL+ R +FV + + SR+
Sbjct:   125 ILSCKVVCDE--NGSKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFK-SRK 177

 Score = 98 (39.6 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
 Identities = 23/67 (34%), Positives = 39/67 (58%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A ++ D G   S+G+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A 
Sbjct:   322 SAKVMTDGG--HSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV--ALAQRKEERKAI 377

Query:   101 LARQSAQ 107
             L  Q  Q
Sbjct:   378 LTNQYIQ 384

 Score = 32 (16.3 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   115 LYDTFSAFGNI 125


>UNIPROTKB|P61286 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9913 "Bos taurus" [GO:0005515 "protein binding"
            evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:2000623 "negative regulation of
            nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
            evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
            [GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
            "RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
            GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
            UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
            Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
            GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
            BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
        Length = 636

 Score = 116 (45.9 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
 Identities = 24/67 (35%), Positives = 40/67 (59%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M     +SKG+G+V+F   E+AQKA+ +MNGK L+G+ I+V   R  ++      L R+
Sbjct:   222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG--RAQKKVERQTELKRK 279

Query:   105 SAQSPEE 111
               Q  ++
Sbjct:   280 FEQMKQD 286

 Score = 112 (44.5 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
 Identities = 25/69 (36%), Positives = 43/69 (62%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             + +  ++ D+  N SKGYG+V F T+E A++A+  MNG LL+ R +FV   + SR+   +
Sbjct:   125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK-SRK-ERE 180

Query:    99 APLARQSAQ 107
             A L  ++ +
Sbjct:   181 AELGARAKE 189

 Score = 108 (43.1 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
 Identities = 25/67 (37%), Positives = 41/67 (61%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A ++M+ G  RSKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A 
Sbjct:   322 SAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV--ALAQRKEERQAH 377

Query:   101 LARQSAQ 107
             L  Q  Q
Sbjct:   378 LTNQYMQ 384

 Score = 32 (16.3 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   115 LYDTFSAFGNI 125


>UNIPROTKB|J9P326 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
            OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
            ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
            KEGG:cfa:612751 Uniprot:J9P326
        Length = 636

 Score = 116 (45.9 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
 Identities = 24/67 (35%), Positives = 40/67 (59%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M     +SKG+G+V+F   E+AQKA+ +MNGK L+G+ I+V   R  ++      L R+
Sbjct:   222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG--RAQKKVERQTELKRK 279

Query:   105 SAQSPEE 111
               Q  ++
Sbjct:   280 FEQMKQD 286

 Score = 112 (44.5 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
 Identities = 25/69 (36%), Positives = 43/69 (62%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             + +  ++ D+  N SKGYG+V F T+E A++A+  MNG LL+ R +FV   + SR+   +
Sbjct:   125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK-SRK-ERE 180

Query:    99 APLARQSAQ 107
             A L  ++ +
Sbjct:   181 AELGARAKE 189

 Score = 108 (43.1 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
 Identities = 25/67 (37%), Positives = 41/67 (61%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A ++M+ G  RSKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A 
Sbjct:   322 SAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV--ALAQRKEERQAH 377

Query:   101 LARQSAQ 107
             L  Q  Q
Sbjct:   378 LTNQYMQ 384

 Score = 32 (16.3 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   115 LYDTFSAFGNI 125


>UNIPROTKB|P11940 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
            [GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
            "cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
            evidence=TAS] [GO:0008494 "translation activator activity"
            evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
            "ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
            regulation of nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
            stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0000184 "nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=TAS] [GO:0000288
            "nuclear-transcribed mRNA catabolic process,
            deadenylation-dependent decay" evidence=TAS] [GO:0000289
            "nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
            [GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
            evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
            [GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
            metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
            process" evidence=TAS] [GO:0044267 "cellular protein metabolic
            process" evidence=TAS] [GO:0045727 "positive regulation of
            translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
            Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
            Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
            GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
            eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
            Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
            PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
            PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
            CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
            EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
            EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
            EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
            IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
            RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
            PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
            PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
            PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
            PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
            SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
            STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
            PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
            KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
            HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
            PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
            BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
            EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
            PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
            Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
        Length = 636

 Score = 116 (45.9 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
 Identities = 24/67 (35%), Positives = 40/67 (59%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M     +SKG+G+V+F   E+AQKA+ +MNGK L+G+ I+V   R  ++      L R+
Sbjct:   222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG--RAQKKVERQTELKRK 279

Query:   105 SAQSPEE 111
               Q  ++
Sbjct:   280 FEQMKQD 286

 Score = 112 (44.5 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
 Identities = 25/69 (36%), Positives = 43/69 (62%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             + +  ++ D+  N SKGYG+V F T+E A++A+  MNG LL+ R +FV   + SR+   +
Sbjct:   125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK-SRK-ERE 180

Query:    99 APLARQSAQ 107
             A L  ++ +
Sbjct:   181 AELGARAKE 189

 Score = 108 (43.1 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
 Identities = 25/67 (37%), Positives = 41/67 (61%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A ++M+ G  RSKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A 
Sbjct:   322 SAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV--ALAQRKEERQAH 377

Query:   101 LARQSAQ 107
             L  Q  Q
Sbjct:   378 LTNQYMQ 384

 Score = 32 (16.3 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   115 LYDTFSAFGNI 125


>UNIPROTKB|F2Z557 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
            EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
            ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
            Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
            Uniprot:F2Z557
        Length = 636

 Score = 116 (45.9 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
 Identities = 24/67 (35%), Positives = 40/67 (59%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M     +SKG+G+V+F   E+AQKA+ +MNGK L+G+ I+V   R  ++      L R+
Sbjct:   222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG--RAQKKVERQTELKRK 279

Query:   105 SAQSPEE 111
               Q  ++
Sbjct:   280 FEQMKQD 286

 Score = 112 (44.5 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
 Identities = 25/69 (36%), Positives = 43/69 (62%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             + +  ++ D+  N SKGYG+V F T+E A++A+  MNG LL+ R +FV   + SR+   +
Sbjct:   125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK-SRK-ERE 180

Query:    99 APLARQSAQ 107
             A L  ++ +
Sbjct:   181 AELGARAKE 189

 Score = 108 (43.1 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
 Identities = 25/67 (37%), Positives = 41/67 (61%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A ++M+ G  RSKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A 
Sbjct:   322 SAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV--ALAQRKEERQAH 377

Query:   101 LARQSAQ 107
             L  Q  Q
Sbjct:   378 LTNQYMQ 384

 Score = 32 (16.3 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   115 LYDTFSAFGNI 125


>UNIPROTKB|Q5R8F7 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
            granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
            evidence=ISS] [GO:2000623 "negative regulation of
            nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
            RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
            SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
            InParanoid:Q5R8F7 Uniprot:Q5R8F7
        Length = 636

 Score = 116 (45.9 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
 Identities = 24/67 (35%), Positives = 40/67 (59%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M     +SKG+G+V+F   E+AQKA+ +MNGK L+G+ I+V   R  ++      L R+
Sbjct:   222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG--RAQKKVERQTELKRK 279

Query:   105 SAQSPEE 111
               Q  ++
Sbjct:   280 FEQMKQD 286

 Score = 112 (44.5 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
 Identities = 25/69 (36%), Positives = 43/69 (62%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             + +  ++ D+  N SKGYG+V F T+E A++A+  MNG LL+ R +FV   + SR+   +
Sbjct:   125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK-SRK-ERE 180

Query:    99 APLARQSAQ 107
             A L  ++ +
Sbjct:   181 AELGARAKE 189

 Score = 108 (43.1 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
 Identities = 25/67 (37%), Positives = 41/67 (61%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A ++M+ G  RSKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A 
Sbjct:   322 SAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV--ALAQRKEERQAH 377

Query:   101 LARQSAQ 107
             L  Q  Q
Sbjct:   378 LTNQYMQ 384

 Score = 32 (16.3 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   115 LYDTFSAFGNI 125


>MGI|MGI:1349722 [details] [associations]
            symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008022 "protein C-terminus binding"
            evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
            stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
            complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISO] [GO:2000623 "negative regulation of
            nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
            eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
            KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
            GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
            GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
            EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
            EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
            EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
            PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
            ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
            STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
            PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
            KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
            CleanEx:MM_PABPC1 Genevestigator:P29341
            GermOnline:ENSMUSG00000022283 Uniprot:P29341
        Length = 636

 Score = 116 (45.9 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
 Identities = 24/67 (35%), Positives = 40/67 (59%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M     +SKG+G+V+F   E+AQKA+ +MNGK L+G+ I+V   R  ++      L R+
Sbjct:   222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG--RAQKKVERQTELKRK 279

Query:   105 SAQSPEE 111
               Q  ++
Sbjct:   280 FEQMKQD 286

 Score = 112 (44.5 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
 Identities = 25/69 (36%), Positives = 43/69 (62%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             + +  ++ D+  N SKGYG+V F T+E A++A+  MNG LL+ R +FV   + SR+   +
Sbjct:   125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK-SRK-ERE 180

Query:    99 APLARQSAQ 107
             A L  ++ +
Sbjct:   181 AELGARAKE 189

 Score = 108 (43.1 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
 Identities = 25/67 (37%), Positives = 41/67 (61%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A ++M+ G  RSKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A 
Sbjct:   322 SAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV--ALAQRKEERQAH 377

Query:   101 LARQSAQ 107
             L  Q  Q
Sbjct:   378 LTNQYMQ 384

 Score = 32 (16.3 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   115 LYDTFSAFGNI 125


>RGD|619838 [details] [associations]
            symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
            binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008022 "protein C-terminus binding"
            evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
            stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
            complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
            nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
            GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
            GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
            GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
            RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
            ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
            MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
            Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
            UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
            Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
        Length = 636

 Score = 116 (45.9 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
 Identities = 24/67 (35%), Positives = 40/67 (59%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M     +SKG+G+V+F   E+AQKA+ +MNGK L+G+ I+V   R  ++      L R+
Sbjct:   222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG--RAQKKVERQTELKRK 279

Query:   105 SAQSPEE 111
               Q  ++
Sbjct:   280 FEQMKQD 286

 Score = 112 (44.5 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
 Identities = 25/69 (36%), Positives = 43/69 (62%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             + +  ++ D+  N SKGYG+V F T+E A++A+  MNG LL+ R +FV   + SR+   +
Sbjct:   125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK-SRK-ERE 180

Query:    99 APLARQSAQ 107
             A L  ++ +
Sbjct:   181 AELGARAKE 189

 Score = 108 (43.1 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
 Identities = 25/67 (37%), Positives = 41/67 (61%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A ++M+ G  RSKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A 
Sbjct:   322 SAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV--ALAQRKEERQAH 377

Query:   101 LARQSAQ 107
             L  Q  Q
Sbjct:   378 LTNQYMQ 384

 Score = 32 (16.3 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   115 LYDTFSAFGNI 125


>RGD|1311201 [details] [associations]
            symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
            GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
            IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
            MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
            KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
            NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
        Length = 643

 Score = 116 (45.9 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
 Identities = 24/56 (42%), Positives = 37/56 (66%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
             + +  ++ D+  N SKGYG+V F T+EEA++A+  MNG  L+ R +FV   + SRR
Sbjct:   125 ILSCKVVCDE--NGSKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFK-SRR 177

 Score = 107 (42.7 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
 Identities = 25/67 (37%), Positives = 41/67 (61%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A + M+ G  RSKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A 
Sbjct:   332 SAKVTMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV--ALAQRKEERQAH 387

Query:   101 LARQSAQ 107
             L+ Q  Q
Sbjct:   388 LSNQYMQ 394

 Score = 107 (42.7 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
 Identities = 22/67 (32%), Positives = 39/67 (58%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M     +SKG+G+V+F   E+A+KA+ +MNGK L+G+ I+V   R  ++      L  +
Sbjct:   222 VMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVG--RAQKKVERQTELKHK 279

Query:   105 SAQSPEE 111
               Q  ++
Sbjct:   280 FGQMKQD 286

 Score = 32 (16.3 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   115 LYDTFSAFGNI 125


>UNIPROTKB|H0YEQ8 [details] [associations]
            symbol:PABPC4 "Polyadenylate-binding protein 4"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
            Ensembl:ENST00000470443 Uniprot:H0YEQ8
        Length = 112

 Score = 94 (38.1 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
 Identities = 19/46 (41%), Positives = 29/46 (63%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVI 84
             + +  ++ D+  N SKGY +V F T+E A KA+  MNG LL+ R +
Sbjct:    69 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKV 112

 Score = 32 (16.3 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:    59 LYDTFSAFGNI 69


>UNIPROTKB|I3LS00 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
            mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
            "poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
            GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
            GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
            Uniprot:I3LS00
        Length = 647

 Score = 116 (45.9 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
 Identities = 24/67 (35%), Positives = 40/67 (59%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M     +SKG+G+V+F   E+AQKA+ +MNGK L+G+ I+V   R  ++      L R+
Sbjct:   222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG--RAQKKVERQTELKRK 279

Query:   105 SAQSPEE 111
               Q  ++
Sbjct:   280 FEQMKQD 286

 Score = 112 (44.5 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
 Identities = 25/69 (36%), Positives = 43/69 (62%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             + +  ++ D+  N SKGYG+V F T+E A++A+  MNG LL+ R +FV   + SR+   +
Sbjct:   125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK-SRK-ERE 180

Query:    99 APLARQSAQ 107
             A L  ++ +
Sbjct:   181 AELGARAKE 189

 Score = 108 (43.1 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
 Identities = 25/67 (37%), Positives = 41/67 (61%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A ++M+ G  RSKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A 
Sbjct:   322 SAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV--ALAQRKEERQAH 377

Query:   101 LARQSAQ 107
             L  Q  Q
Sbjct:   378 LTNQYMQ 384

 Score = 32 (16.3 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   115 LYDTFSAFGNI 125


>DICTYBASE|DDB_G0293558 [details] [associations]
            symbol:pabpc1A "polyadenylate binding protein (PABP)"
            species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
            vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
            binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
            GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
            KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
            ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
            EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
            ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
        Length = 565

 Score = 114 (45.2 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
 Identities = 20/55 (36%), Positives = 37/55 (67%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
             + +  ++ D G N SKG+G+V + T+E A KA+A +NG +++G+ +FV   + S+
Sbjct:   124 ILSCKVVTDDG-NSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSK 177

 Score = 89 (36.4 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
 Identities = 14/46 (30%), Positives = 31/46 (67%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
             +A ++ D     SKG+G+V ++  +EA +A+ +MNG+++  + ++V
Sbjct:   312 SAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYV 357

 Score = 88 (36.0 bits), Expect = 0.00031, Sum P(2) = 0.00031
 Identities = 29/97 (29%), Positives = 47/97 (48%)

Query:    10 GQVTE-DLVYFYFK--SQPLFP--LHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTE 64
             GQ TE      +FK  S+ + P  L   L     +   TI+ D  K +SKG+G+  F + 
Sbjct:   180 GQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADD-KGKSKGFGFANFESA 238

Query:    65 EEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPL 101
             E A+  + + NGK+  G+ I+    R  ++   +A L
Sbjct:   239 EAAKNVVENENGKIFHGKPIYAG--RAQKKIEREAEL 273

 Score = 43 (20.2 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query:     2 LADAFSQFGQVTEDLV 17
             L + FSQFG +T  +V
Sbjct:   300 LREVFSQFGTITSAIV 315

 Score = 32 (16.3 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   114 LYDTFSAFGNI 124


>UNIPROTKB|I3LQ36 [details] [associations]
            symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:CU210877
            Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
        Length = 161

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 22/56 (39%), Positives = 33/56 (58%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
             +F   ++ D    RS+G+G++TF+  E A  A+   NG+ LDGR I VD+   S R
Sbjct:    32 IFEVVVVKDWETRRSQGFGFITFTNPEHASNAMRATNGESLDGRQIHVDHAGKSAR 87


>RGD|1563142 [details] [associations]
            symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
            GeneTree:ENSGT00640000091232 IPI:IPI00778604
            ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
            UCSC:RGD:1563142 Uniprot:D3ZAS7
        Length = 607

 Score = 110 (43.8 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
 Identities = 23/67 (34%), Positives = 38/67 (56%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M     +S+G+G++ F   EEAQKA+  MNGK + G++++V   R  +R      L R+
Sbjct:   222 VMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVG--RAQKRAERQNELKRR 279

Query:   105 SAQSPEE 111
               Q  +E
Sbjct:   280 FEQMKQE 286

 Score = 105 (42.0 bits), Expect = 7.7e-05, P = 7.7e-05
 Identities = 25/62 (40%), Positives = 39/62 (62%)

Query:    36 DSFLFAATIIMDK---GKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
             D+F    +I+  K    ++ S+G+G+V F T E AQKA+  MNG LL+ R +FV + + S
Sbjct:   117 DTFSTFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFK-S 175

Query:    93 RR 94
             R+
Sbjct:   176 RQ 177

 Score = 94 (38.1 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
 Identities = 16/36 (44%), Positives = 28/36 (77%)

Query:    51 NRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
             + SKG+G+V FS+ EEA KA+ +MNG+++  + ++V
Sbjct:   330 SHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365

 Score = 36 (17.7 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
 Identities = 7/10 (70%), Positives = 8/10 (80%)

Query:     2 LADAFSQFGQ 11
             L D FSQFG+
Sbjct:   207 LQDLFSQFGK 216


>TAIR|locus:2044370 [details] [associations]
            symbol:AT2G46780 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT022057
            IPI:IPI00944264 RefSeq:NP_182201.4 UniGene:At.22279
            ProteinModelPortal:Q501B0 SMR:Q501B0 PRIDE:Q501B0
            EnsemblPlants:AT2G46780.1 GeneID:819291 KEGG:ath:AT2G46780
            TAIR:At2g46780 OMA:FPYSTYG PhylomeDB:Q501B0 ProtClustDB:CLSN2722623
            Genevestigator:Q501B0 Uniprot:Q501B0
        Length = 336

 Score = 103 (41.3 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
 Identities = 21/41 (51%), Positives = 27/41 (65%)

Query:    42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGR 82
             A +I DK   RSKGYG+VTF   E A +A  +MN  ++DGR
Sbjct:    51 AVVITDKNTGRSKGYGFVTFKEAEAAMRACQNMN-PVIDGR 90

 Score = 36 (17.7 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
 Identities = 6/12 (50%), Positives = 9/12 (75%)

Query:     6 FSQFGQVTEDLV 17
             F QFG++ E +V
Sbjct:    42 FEQFGEIVEAVV 53


>UNIPROTKB|P20965 [details] [associations]
            symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
            species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
            "poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
            initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
            self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
            evidence=IDA] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
            GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
            GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
            EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
            ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
            KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
        Length = 633

 Score = 114 (45.2 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
 Identities = 23/67 (34%), Positives = 40/67 (59%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M     +SKG+G+V+F   E+AQKA+ +MNGK ++G+ +FV   R  ++      L R+
Sbjct:   222 VMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVG--RAQKKVERQTELKRK 279

Query:   105 SAQSPEE 111
               Q  ++
Sbjct:   280 FEQMKQD 286

 Score = 111 (44.1 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
 Identities = 25/69 (36%), Positives = 43/69 (62%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             + +  ++ D+  N SKGYG+V F T+E A++A+  MNG LL+ R +FV   + SR+   +
Sbjct:   125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFK-SRK-ERE 180

Query:    99 APLARQSAQ 107
             A L  ++ +
Sbjct:   181 AELGARAKE 189

 Score = 108 (43.1 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
 Identities = 25/67 (37%), Positives = 41/67 (61%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A ++M+ G  RSKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A 
Sbjct:   322 SAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV--ALAQRKEERQAH 377

Query:   101 LARQSAQ 107
             L  Q  Q
Sbjct:   378 LTNQYMQ 384

 Score = 32 (16.3 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   115 LYDTFSAFGNI 125


>UNIPROTKB|K7ELT6 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
            Uniprot:K7ELT6
        Length = 135

 Score = 85 (35.0 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
 Identities = 14/35 (40%), Positives = 25/35 (71%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKL 78
             ++ D+   RS+G+G+VTF   ++A+ A+  MNGK+
Sbjct:    37 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKV 71

 Score = 39 (18.8 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query:     2 LADAFSQFGQVTEDLV 17
             L   FS++GQ++E +V
Sbjct:    22 LEQVFSKYGQISEVVV 37


>UNIPROTKB|D4AC21 [details] [associations]
            symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
            ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
            ArrayExpress:D4AC21 Uniprot:D4AC21
        Length = 588

 Score = 113 (44.8 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
 Identities = 24/67 (35%), Positives = 39/67 (58%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M     +SKG+G+V++   E+A KA+ +MNGK + G+ IFV   R  ++    A L R+
Sbjct:   151 VMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVG--RAQKKVERQAELKRK 208

Query:   105 SAQSPEE 111
               Q  +E
Sbjct:   209 FEQLKQE 215

 Score = 108 (43.1 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
 Identities = 24/67 (35%), Positives = 41/67 (61%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A ++++ G  RSKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A 
Sbjct:   251 SAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV--ALAQRKEERKAH 306

Query:   101 LARQSAQ 107
             L  Q  Q
Sbjct:   307 LTNQYMQ 313

 Score = 107 (42.7 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
 Identities = 25/69 (36%), Positives = 41/69 (59%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             + +  ++ D+  N SKGY +V F T+E A KA+  MNG LL+ R +FV   + SR+   +
Sbjct:    54 ILSCKVVCDE--NGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFK-SRK-ERE 109

Query:    99 APLARQSAQ 107
             A L  ++ +
Sbjct:   110 AELGAKAKE 118

 Score = 32 (16.3 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query:     2 LADAFSQFGQ 11
             L + FSQFG+
Sbjct:   136 LRELFSQFGK 145

 Score = 32 (16.3 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:    44 LYDTFSAFGNI 54


>UNIPROTKB|H0YAR2 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
            Uniprot:H0YAR2
        Length = 284

 Score = 118 (46.6 bits), Expect = 8.6e-07, P = 8.6e-07
 Identities = 27/79 (34%), Positives = 46/79 (58%)

Query:    34 ISDSFLFAATI-IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
             + D F  A ++ +M     +SKG+G+V+F   E+AQKA+ +MNGK L+G+ I+V   R  
Sbjct:    79 LKDLFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG--RAQ 136

Query:    93 RRYNTDAPLARQSAQSPEE 111
             ++      L R+  Q  ++
Sbjct:   137 KKVERQTELKRKFEQMKQD 155

 Score = 110 (43.8 bits), Expect = 6.5e-06, P = 6.5e-06
 Identities = 24/58 (41%), Positives = 38/58 (65%)

Query:    50 KNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQSAQ 107
             +N SKGYG+V F T+E A++A+  MNG LL+ R +FV   + SR+   +A L  ++ +
Sbjct:     6 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK-SRK-EREAELGARAKE 61

 Score = 108 (43.1 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 25/67 (37%), Positives = 41/67 (61%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A ++M+ G  RSKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A 
Sbjct:   191 SAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV--ALAQRKEERQAH 246

Query:   101 LARQSAQ 107
             L  Q  Q
Sbjct:   247 LTNQYMQ 253


>WB|WBGene00015943 [details] [associations]
            symbol:tiar-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
            "morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IMP]
            [GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0010171 "body morphogenesis"
            evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
            GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
            GO:GO:0003676 EMBL:FO080599 HSSP:P11940
            GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
            GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
            NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
            SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
            EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
            OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
        Length = 408

 Score = 101 (40.6 bits), Expect = 8.6e-07, Sum P(2) = 8.6e-07
 Identities = 19/43 (44%), Positives = 28/43 (65%)

Query:    42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVI 84
             A +I D    +SKGYG+V++   EEA++A+  MNG+ L  R I
Sbjct:   164 AKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTI 206

 Score = 40 (19.1 bits), Expect = 8.6e-07, Sum P(2) = 8.6e-07
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query:     2 LADAFSQFGQVTEDLVYFYFKSQP 25
             +A  F+Q G VT+  V F   + P
Sbjct:    62 IATLFNQIGSVTKTKVIFDGSNDP 85

 Score = 33 (16.7 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query:     2 LADAFSQFGQVTE 14
             L +AF  FG V++
Sbjct:   151 LREAFQPFGDVSD 163


>UNIPROTKB|Q4VY17 [details] [associations]
            symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
            EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
            IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
            Ensembl:ENST00000537323 Uniprot:Q4VY17
        Length = 330

 Score = 101 (40.6 bits), Expect = 9.1e-07, Sum P(2) = 9.1e-07
 Identities = 22/67 (32%), Positives = 35/67 (52%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M      S+ +G+V F   EEAQKA+  MNGK + GR+++    R  +R      L R+
Sbjct:   222 VMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAG--RAQKRVERQNELKRR 279

Query:   105 SAQSPEE 111
               Q  ++
Sbjct:   280 FEQMKQD 286

 Score = 101 (40.6 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
 Identities = 23/55 (41%), Positives = 36/55 (65%)

Query:    53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQSAQ 107
             S+G+G+V F T E AQ+A+  MNG LL+ R +FV + + SRR   +A L  ++ +
Sbjct:   137 SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFK-SRR-EREAELGARALE 189

 Score = 37 (18.1 bits), Expect = 9.1e-07, Sum P(2) = 9.1e-07
 Identities = 7/11 (63%), Positives = 9/11 (81%)

Query:     2 LADAFSQFGQV 12
             L D FSQFG++
Sbjct:   207 LQDLFSQFGKM 217

 Score = 32 (16.3 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   115 LYDTFSTFGNI 125


>ASPGD|ASPL0000007134 [details] [associations]
            symbol:AN6256 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
            "cytosol" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACD01000107 EMBL:BN001301
            GO:GO:0016853 HOGENOM:HOG000276232 eggNOG:NOG331137
            OrthoDB:EOG4TJ03G RefSeq:XP_663860.1 ProteinModelPortal:Q5AZM4
            STRING:Q5AZM4 EnsemblFungi:CADANIAT00006735 GeneID:2871037
            KEGG:ani:AN6256.2 OMA:TAVWEQE Uniprot:Q5AZM4
        Length = 153

 Score = 87 (35.7 bits), Expect = 9.1e-07, Sum P(2) = 9.1e-07
 Identities = 17/51 (33%), Positives = 30/51 (58%)

Query:    46 MDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 96
             +    +  +G+GYV F + E+A++A+ +M+G  L GR I V   +P +  N
Sbjct:    45 LPNSNDNHRGFGYVEFDSPEDAKEAIDNMDGSELYGRTIKVAPAKPQKDAN 95

 Score = 37 (18.1 bits), Expect = 9.1e-07, Sum P(2) = 9.1e-07
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query:     2 LADAFSQFGQVTE 14
             LA+AF  FG+V +
Sbjct:    25 LAEAFVPFGEVVD 37


>UNIPROTKB|Q9H361 [details] [associations]
            symbol:PABPC3 "Polyadenylate-binding protein 3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
            "poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
            process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
            eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
            EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
            PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
            IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
            PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
            GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
            GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
            PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
            PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
            NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
            Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
        Length = 631

 Score = 123 (48.4 bits), Expect = 9.5e-07, P = 9.5e-07
 Identities = 27/71 (38%), Positives = 44/71 (61%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             + +  ++ D+  N SKGYG+V F T E A++A+  MNG LL+GR +FV   + SR+   +
Sbjct:   125 ILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFK-SRK-ERE 180

Query:    99 APLARQSAQSP 109
             A L  ++ + P
Sbjct:   181 AELGARAKEFP 191

 Score = 114 (45.2 bits), Expect = 8.8e-06, P = 8.8e-06
 Identities = 24/67 (35%), Positives = 39/67 (58%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M     +SKG+G+V+F   E+AQKA+ +MNGK L+G+ I+V   R  ++      L R 
Sbjct:   222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG--RAQKKVERQTELKRT 279

Query:   105 SAQSPEE 111
               Q  ++
Sbjct:   280 FEQMKQD 286

 Score = 105 (42.0 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
 Identities = 20/46 (43%), Positives = 35/46 (76%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
             +A ++M+ G  RSKG+G+V FS+ EEA KA+ +MNG+++  + ++V
Sbjct:   322 SAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365

 Score = 34 (17.0 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
 Identities = 7/12 (58%), Positives = 8/12 (66%)

Query:     2 LADAFSQFGQVT 13
             L  AFS FG +T
Sbjct:   310 LRKAFSPFGTIT 321


>RGD|1310759 [details] [associations]
            symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
            RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
            GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
            OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
        Length = 630

 Score = 113 (44.8 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
 Identities = 21/48 (43%), Positives = 36/48 (75%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
             + +  ++ D+G  +SKG+G+V+F   E+AQKA+ +MNGK L+G+ I+V
Sbjct:   217 VLSVKVMTDEG-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 263

 Score = 110 (43.8 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
 Identities = 25/69 (36%), Positives = 43/69 (62%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             + +  ++ D+  N SKG+G+V F TEE A++A+  MNG LL+ R +FV   + SR+   +
Sbjct:   125 ILSCKVVCDE--NGSKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFK-SRK-ERE 180

Query:    99 APLARQSAQ 107
             A L  ++ +
Sbjct:   181 AELGTRTKE 189

 Score = 109 (43.4 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
 Identities = 25/66 (37%), Positives = 41/66 (62%)

Query:    42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPL 101
             +T +M +G  RSKG+G+V FS+ EEA KA+++MNG+++  + ++V      R+    A L
Sbjct:   322 STKVMTEG-GRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYV--ALAQRKEERQAHL 378

Query:   102 ARQSAQ 107
               Q  Q
Sbjct:   379 TNQYIQ 384

 Score = 32 (16.3 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   115 LYDTFSAFGNI 125


>UNIPROTKB|I3LH22 [details] [associations]
            symbol:LOC100514264 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:CU915617
            Ensembl:ENSSSCT00000023009 OMA:QALEDHI Uniprot:I3LH22
        Length = 161

 Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 21/49 (42%), Positives = 31/49 (63%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
             I+ D+   RS+G+G++TF+  E A   +  MNG+ LDGR I VD+   S
Sbjct:    37 IVKDRETQRSRGFGFITFTNPEHASNVMRAMNGESLDGRQIHVDHAGKS 85


>UNIPROTKB|D4AC14 [details] [associations]
            symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
            Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
        Length = 631

 Score = 113 (44.8 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
 Identities = 24/67 (35%), Positives = 39/67 (58%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M     +SKG+G+V++   E+A KA+ +MNGK + G+ IFV   R  ++    A L R+
Sbjct:   222 VMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVG--RAQKKVERQAELKRK 279

Query:   105 SAQSPEE 111
               Q  +E
Sbjct:   280 FEQLKQE 286

 Score = 108 (43.1 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
 Identities = 24/67 (35%), Positives = 41/67 (61%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A ++++ G  RSKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A 
Sbjct:   322 SAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV--ALAQRKEERKAH 377

Query:   101 LARQSAQ 107
             L  Q  Q
Sbjct:   378 LTNQYMQ 384

 Score = 107 (42.7 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
 Identities = 25/69 (36%), Positives = 41/69 (59%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             + +  ++ D+  N SKGY +V F T+E A KA+  MNG LL+ R +FV   + SR+   +
Sbjct:   125 ILSCKVVCDE--NGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFK-SRK-ERE 180

Query:    99 APLARQSAQ 107
             A L  ++ +
Sbjct:   181 AELGAKAKE 189

 Score = 32 (16.3 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query:     2 LADAFSQFGQ 11
             L + FSQFG+
Sbjct:   207 LRELFSQFGK 216

 Score = 32 (16.3 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   115 LYDTFSAFGNI 125


>UNIPROTKB|K7ELV6 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
        Length = 70

 Score = 84 (34.6 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
 Identities = 14/34 (41%), Positives = 24/34 (70%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGK 77
             ++ D+   RS+G+G+VTF   ++A+ A+  MNGK
Sbjct:    37 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGK 70

 Score = 39 (18.8 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query:     2 LADAFSQFGQVTEDLV 17
             L   FS++GQ++E +V
Sbjct:    22 LEQVFSKYGQISEVVV 37


>UNIPROTKB|G3V9N0 [details] [associations]
            symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
            OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
        Length = 660

 Score = 113 (44.8 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
 Identities = 24/67 (35%), Positives = 39/67 (58%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M     +SKG+G+V++   E+A KA+ +MNGK + G+ IFV   R  ++    A L R+
Sbjct:   222 VMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVG--RAQKKVERQAELKRK 279

Query:   105 SAQSPEE 111
               Q  +E
Sbjct:   280 FEQLKQE 286

 Score = 108 (43.1 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
 Identities = 24/67 (35%), Positives = 41/67 (61%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A ++++ G  RSKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A 
Sbjct:   322 SAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV--ALAQRKEERKAH 377

Query:   101 LARQSAQ 107
             L  Q  Q
Sbjct:   378 LTNQYMQ 384

 Score = 107 (42.7 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
 Identities = 25/69 (36%), Positives = 41/69 (59%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             + +  ++ D+  N SKGY +V F T+E A KA+  MNG LL+ R +FV   + SR+   +
Sbjct:   125 ILSCKVVCDE--NGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFK-SRK-ERE 180

Query:    99 APLARQSAQ 107
             A L  ++ +
Sbjct:   181 AELGAKAKE 189

 Score = 32 (16.3 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query:     2 LADAFSQFGQ 11
             L + FSQFG+
Sbjct:   207 LRELFSQFGK 216

 Score = 32 (16.3 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   115 LYDTFSAFGNI 125


>UNIPROTKB|H0YBQ4 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
            Uniprot:H0YBQ4
        Length = 258

 Score = 116 (45.9 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 24/67 (35%), Positives = 40/67 (59%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M     +SKG+G+V+F   E+AQKA+ +MNGK L+G+ I+V   R  ++      L R+
Sbjct:    55 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG--RAQKKVERQTELKRK 112

Query:   105 SAQSPEE 111
               Q  ++
Sbjct:   113 FEQMKQD 119

 Score = 108 (43.1 bits), Expect = 8.8e-06, P = 8.8e-06
 Identities = 25/67 (37%), Positives = 41/67 (61%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A ++M+ G  RSKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A 
Sbjct:   155 SAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV--ALAQRKEERQAH 210

Query:   101 LARQSAQ 107
             L  Q  Q
Sbjct:   211 LTNQYMQ 217


>UNIPROTKB|Q5JQF3 [details] [associations]
            symbol:PABPC5 "Polyadenylate-binding protein 5"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
            IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
            HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
        Length = 218

 Score = 114 (45.2 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 24/61 (39%), Positives = 39/61 (63%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLAR 103
             +I D    +SKG+G+V + T E AQKA+ D++GK +DG+V++V   R  ++    A L R
Sbjct:    66 VIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVG--RAQKKIERLAELRR 122

Query:   104 Q 104
             +
Sbjct:   123 R 123

 Score = 89 (36.4 bits), Expect = 0.00080, P = 0.00079
 Identities = 20/53 (37%), Positives = 34/53 (64%)

Query:    42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
             A ++M+ G+   KG+G V FS+ EEA KA+ +MNG+++  + + V   +  RR
Sbjct:   167 AKVMMEVGQG--KGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQARRR 217


>TAIR|locus:2159401 [details] [associations]
            symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
            "mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
            evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
            "copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
            to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
            ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
            "regulation of flower development" evidence=RCA] [GO:0010228
            "vegetative to reproductive phase transition of meristem"
            evidence=RCA] [GO:0034968 "histone lysine methylation"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
            EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
            HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
            IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
            ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
            PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
            KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
            HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
            ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
        Length = 309

 Score = 101 (40.6 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
 Identities = 18/44 (40%), Positives = 32/44 (72%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
             +I+D+   RS+G+G+VTF++ E A  A+  ++G+ L GRV+ V+
Sbjct:    71 VILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVN 114

 Score = 35 (17.4 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
 Identities = 6/16 (37%), Positives = 12/16 (75%)

Query:     2 LADAFSQFGQVTEDLV 17
             L +AF+++G+V +  V
Sbjct:    56 LREAFTKYGEVVDTRV 71


>TAIR|locus:2119797 [details] [associations]
            symbol:AT4G20030 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT025729
            EMBL:AK176834 IPI:IPI00538556 RefSeq:NP_567594.1 UniGene:At.26265
            UniGene:At.71246 ProteinModelPortal:Q67XI5 SMR:Q67XI5 STRING:Q67XI5
            EnsemblPlants:AT4G20030.1 GeneID:827748 KEGG:ath:AT4G20030
            TAIR:At4g20030 HOGENOM:HOG000005780 InParanoid:Q67XI5 OMA:DEVADCW
            PhylomeDB:Q67XI5 ProtClustDB:CLSN2689522 Genevestigator:Q67XI5
            Uniprot:Q67XI5
        Length = 152

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 21/71 (29%), Positives = 42/71 (59%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLAR 103
             +I D+   RSKGY ++ F+++++A  A+  M+ ++ +GR+I++D  +P +R     P   
Sbjct:    71 LIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYIDIAKPGKRDFQGLPRTS 130

Query:   104 ---QSAQSPEE 111
                + +  PEE
Sbjct:   131 GPPEKSDEPEE 141


>ZFIN|ZDB-GENE-050308-1 [details] [associations]
            symbol:pabpc1b "poly A binding protein, cytoplasmic 1
            b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
            GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
            EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
            UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
            Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
            InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
        Length = 634

 Score = 112 (44.5 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
 Identities = 26/67 (38%), Positives = 41/67 (61%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A ++MD G  RSKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A 
Sbjct:   322 SAKVMMDGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV--ALAQRKEERQAH 377

Query:   101 LARQSAQ 107
             L  Q  Q
Sbjct:   378 LTNQYMQ 384

 Score = 112 (44.5 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
 Identities = 25/69 (36%), Positives = 43/69 (62%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             + +  ++ D+  N SKGYG+V F T+E A++A+  MNG LL+ R +FV   + SR+   +
Sbjct:   125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK-SRK-ERE 180

Query:    99 APLARQSAQ 107
             A L  ++ +
Sbjct:   181 AELGARAKE 189

 Score = 111 (44.1 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
 Identities = 21/67 (31%), Positives = 41/67 (61%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M     +S+G+G+V+F   E+AQ+A+ +MNGK ++G++I+V   R  ++      L R+
Sbjct:   222 VMTDENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVG--RAQKKVERQTELKRK 279

Query:   105 SAQSPEE 111
               Q  ++
Sbjct:   280 FEQMKQD 286

 Score = 32 (16.3 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   115 LYDTFSAFGNI 125


>POMBASE|SPAC140.02 [details] [associations]
            symbol:gar2 "nucleolar protein required for rRNA
            processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
            [GO:0005732 "small nucleolar ribonucleoprotein complex"
            evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
            [GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
            "ribosome biogenesis" evidence=IMP] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
            GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
            GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
            ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
            EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
            KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
            Uniprot:P41891
        Length = 500

 Score = 120 (47.3 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 30/68 (44%), Positives = 39/68 (57%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             +  A +IMD    RSKGYGYV F T E A+ A+A    K +DGR++ +D   P R  N  
Sbjct:   289 IVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNP-RPANPQ 347

Query:    99 APLARQSA 106
              P A+Q A
Sbjct:   348 -PYAQQRA 354


>TAIR|locus:2049721 [details] [associations]
            symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
            "response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
            evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
            [GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
            "response to abscisic acid stimulus" evidence=IEP] [GO:0009534
            "chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
            biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
            incompatible interaction" evidence=RCA] [GO:0019684
            "photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
            response to bacterium" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
            GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
            HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
            EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
            RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
            SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
            PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
            GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
            InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
            ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
            Uniprot:Q9ZUU4
        Length = 289

 Score = 116 (45.9 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 24/55 (43%), Positives = 34/55 (61%)

Query:    42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV--RPSRR 94
             A +I D+   RSKG+G+VT+ + +E Q A+  ++G  LDGR I V     RP RR
Sbjct:   233 ARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRR 287

 Score = 92 (37.4 bits), Expect = 0.00065, P = 0.00065
 Identities = 21/48 (43%), Positives = 28/48 (58%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
             +I DK   RS+G+G+VT S+  E + A    NG  LDGR + V N  P
Sbjct:   122 VIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRV-NAGP 168


>UNIPROTKB|H0YBN4 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000523555
            Uniprot:H0YBN4
        Length = 175

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 24/58 (41%), Positives = 38/58 (65%)

Query:    50 KNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQSAQ 107
             +N SKGYG+V F T+E A++A+  MNG LL+ R +FV   + SR+   +A L  ++ +
Sbjct:    81 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK-SRK-EREAELGARAKE 136


>UNIPROTKB|K7GNR2 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
            Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
        Length = 129

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 21/50 (42%), Positives = 34/50 (68%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV-RPS 92
             ++ D+  N+S+G+ +VTF +  +A+ A  DMNGK LDG+ I V+   +PS
Sbjct:    39 LMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPS 88


>WB|WBGene00012904 [details] [associations]
            symbol:tiar-2 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
            HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
            ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
            EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
            UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
            NextBio:886000 Uniprot:Q9U2F5
        Length = 434

 Score = 101 (40.6 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
 Identities = 19/43 (44%), Positives = 28/43 (65%)

Query:    42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVI 84
             A II D   N+ KGYG+V++   E+A++A+ +MNG  L  R I
Sbjct:   161 AKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTI 203

 Score = 38 (18.4 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
 Identities = 7/13 (53%), Positives = 11/13 (84%)

Query:     2 LADAFSQFGQVTE 14
             L +AF +FG+V+E
Sbjct:   148 LREAFVKFGEVSE 160

 Score = 32 (16.3 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query:     2 LADAFSQFGQVTEDLVYFYFKSQP 25
             LA  F+Q G V +  + F   + P
Sbjct:    56 LATLFNQIGAVMKAKIIFEGLNDP 79


>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
            symbol:pabpc4 "poly(A) binding protein,
            cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
            EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
            ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
            GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
            NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
        Length = 637

 Score = 110 (43.8 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
 Identities = 24/67 (35%), Positives = 42/67 (62%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A +++++G  RSKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A 
Sbjct:   323 SAKVMLEEG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV--ALAQRKEERKAH 378

Query:   101 LARQSAQ 107
             L  Q  Q
Sbjct:   379 LTNQYMQ 385

 Score = 109 (43.4 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
 Identities = 22/67 (32%), Positives = 39/67 (58%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M     +S+G+G+V++   E+A KA+ +MNG  L+G+ +FV   R  ++    A L R+
Sbjct:   223 VMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVG--RAQKKMERQAELKRK 280

Query:   105 SAQSPEE 111
               Q  +E
Sbjct:   281 FEQLKQE 287

 Score = 100 (40.3 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
 Identities = 21/56 (37%), Positives = 35/56 (62%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
             + +  ++ D+  N SKGY +V F T++ A +A+  MNG LL+ R +FV   + SR+
Sbjct:   126 ILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFK-SRK 178

 Score = 32 (16.3 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   116 LYDTFSAFGNI 126


>POMBASE|SPAC57A7.04c [details] [associations]
            symbol:pabp "mRNA export shuttling protein"
            species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
            translational initiation" evidence=NAS] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
            "cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
            evidence=IMP] [GO:0006446 "regulation of translational initiation"
            evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
            GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
            GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
            RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
            IntAct:P31209 STRING:P31209 PRIDE:P31209
            EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
            OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
        Length = 653

 Score = 103 (41.3 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
 Identities = 19/46 (41%), Positives = 35/46 (76%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
             +A I+ D+ + +SKG+G+V ++T EEA KA+ +MN ++L G+ ++V
Sbjct:   392 SAKIMTDE-QGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYV 436

 Score = 39 (18.8 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
 Identities = 6/11 (54%), Positives = 9/11 (81%)

Query:     3 ADAFSQFGQVT 13
             +D F QFG++T
Sbjct:   278 SDLFGQFGEIT 288

 Score = 33 (16.7 bits), Expect = 9.6e-06, Sum P(2) = 9.6e-06
 Identities = 6/11 (54%), Positives = 8/11 (72%)

Query:     2 LADAFSQFGQV 12
             L D FS FG++
Sbjct:   184 LHDTFSAFGKI 194


>UNIPROTKB|H0YB86 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000523636
            Uniprot:H0YB86
        Length = 165

 Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 25/67 (37%), Positives = 41/67 (61%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A ++M+ G  RSKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A 
Sbjct:    13 SAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV--ALAQRKEERQAH 68

Query:   101 LARQSAQ 107
             L  Q  Q
Sbjct:    69 LTNQYMQ 75


>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
            symbol:pabpc1a "poly A binding protein,
            cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
            EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
            UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
            GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
            NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
        Length = 634

 Score = 109 (43.4 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
 Identities = 23/56 (41%), Positives = 36/56 (64%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
             + +  ++ D+  N SKGYG+V F T E A++A+  MNG LL+ R +FV   + SR+
Sbjct:   125 ILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFK-SRK 177

 Score = 109 (43.4 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
 Identities = 21/67 (31%), Positives = 40/67 (59%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M     +SKG+G+V+F   E+AQ+A+ +MNGK ++G+ ++V   +      T+  L R+
Sbjct:   222 VMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTE--LKRK 279

Query:   105 SAQSPEE 111
               Q  ++
Sbjct:   280 FEQMKQD 286

 Score = 107 (42.7 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
 Identities = 25/67 (37%), Positives = 41/67 (61%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A ++M+ G  RSKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A 
Sbjct:   322 SAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV--ALAQRKEERQAH 377

Query:   101 LARQSAQ 107
             L  Q  Q
Sbjct:   378 LTSQYMQ 384

 Score = 32 (16.3 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   115 LYDTFSAFGNI 125


>WB|WBGene00003903 [details] [associations]
            symbol:pab-2 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0009792 "embryo development ending in
            birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
            GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
            GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
            RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
            STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
            EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
            EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
            UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
            OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
        Length = 692

 Score = 103 (41.3 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
 Identities = 24/67 (35%), Positives = 39/67 (58%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A +++D+   RSKG+G+V F   EEA  A+ DMN K++  + ++V      R+ +  A 
Sbjct:   371 SAKVMVDEN-GRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYV--ALAQRKEDRRAQ 427

Query:   101 LARQSAQ 107
             LA Q  Q
Sbjct:   428 LASQYMQ 434

 Score = 98 (39.6 bits), Expect = 0.00051, P = 0.00051
 Identities = 20/45 (44%), Positives = 28/45 (62%)

Query:    47 DKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
             D+G   SKGYG+V F TE  AQ A+  +NG LL  + ++V   +P
Sbjct:   180 DEGN--SKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQP 222

 Score = 39 (18.8 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query:     2 LADAFSQFGQVTEDLVYFYFKSQP 25
             L+  FS+FG++T  +V    + +P
Sbjct:   254 LSAMFSKFGEITSAVVMTDAQGKP 277

 Score = 36 (17.7 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
 Identities = 7/12 (58%), Positives = 8/12 (66%)

Query:     2 LADAFSQFGQVT 13
             L D FS FG +T
Sbjct:   359 LRDHFSSFGTIT 370


>TAIR|locus:2009036 [details] [associations]
            symbol:PAB1 "poly(A) binding protein 1" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
            initiation factor activity" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
            ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
            EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
            OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
        Length = 407

 Score = 101 (40.6 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
 Identities = 22/54 (40%), Positives = 31/54 (57%)

Query:    33 LISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
             L S+     +  +M      SKG G+V FST EEA KA+  MNGK++  + I+V
Sbjct:   242 LFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYV 295

 Score = 35 (17.4 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query:     2 LADAFSQFGQV 12
             L D FS FG+V
Sbjct:    47 LCDMFSAFGKV 57

 Score = 33 (16.7 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
 Identities = 5/12 (41%), Positives = 9/12 (75%)

Query:     6 FSQFGQVTEDLV 17
             F +FG++T  +V
Sbjct:   139 FGEFGEITSAVV 150


>CGD|CAL0001392 [details] [associations]
            symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
            "cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
            "cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
            evidence=IEA] [GO:0006446 "regulation of translational initiation"
            evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
            poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
            GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
            GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
            RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
            SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
            KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
        Length = 629

 Score = 107 (42.7 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
 Identities = 18/46 (39%), Positives = 36/46 (78%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
             +A +++D+   +SKG+G+V F+T EEA KA+ +MN ++++G+ ++V
Sbjct:   364 SAKVMVDEA-GKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYV 408

 Score = 98 (39.6 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
 Identities = 28/96 (29%), Positives = 51/96 (53%)

Query:     4 DAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFA-----ATIIMDKGKN-RSKGYG 57
             D  S+F ++  +    Y K+     L+Y   S   LF+      +I ++K ++ +SKG+G
Sbjct:   220 DRESKFEEMKANFTNIYVKN---IDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFG 276

Query:    58 YVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
             +V F   E A KA+ ++N K ++G+ I+V   +  R
Sbjct:   277 FVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKR 312

 Score = 33 (16.7 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
 Identities = 6/11 (54%), Positives = 8/11 (72%)

Query:     2 LADAFSQFGQV 12
             L D FS FG++
Sbjct:   156 LHDTFSAFGKI 166


>UNIPROTKB|F1NH82 [details] [associations]
            symbol:F1NH82 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
            EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
            Ensembl:ENSGALT00000023332 Uniprot:F1NH82
        Length = 469

 Score = 116 (45.9 bits), Expect = 3.5e-06, P = 3.5e-06
 Identities = 24/67 (35%), Positives = 40/67 (59%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M     +SKG+G+V+F   E+AQKA+ +MNGK L+G+ I+V   R  ++      L R+
Sbjct:    54 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG--RAQKKVERQTELKRK 111

Query:   105 SAQSPEE 111
               Q  ++
Sbjct:   112 FEQMKQD 118

 Score = 108 (43.1 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 25/67 (37%), Positives = 41/67 (61%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A ++M+ G  RSKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A 
Sbjct:   154 SAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV--ALAQRKEERQAH 209

Query:   101 LARQSAQ 107
             L  Q  Q
Sbjct:   210 LTNQYMQ 216


>FB|FBgn0031883 [details] [associations]
            symbol:CG11266 species:7227 "Drosophila melanogaster"
            [GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
            splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
            evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
            GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
            GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
            TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
            GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
            KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
            GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
            RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
            STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
            UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
        Length = 594

 Score = 117 (46.2 bits), Expect = 3.8e-06, P = 3.8e-06
 Identities = 25/57 (43%), Positives = 35/57 (61%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNT 97
             A  +IMD    RSKGYG++T+   ++A+KAL  +NG  L GR++ V NV      NT
Sbjct:   363 AIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMKVGNVTERLDMNT 419


>ASPGD|ASPL0000078272 [details] [associations]
            symbol:AN4330 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:BN001303 eggNOG:COG0724 HOGENOM:HOG000187841 KO:K14573
            OrthoDB:EOG4K6KCP EMBL:AACD01000075 OMA:MHALECL RefSeq:XP_661934.1
            ProteinModelPortal:Q5B550 STRING:Q5B550
            EnsemblFungi:CADANIAT00006131 GeneID:2872127 KEGG:ani:AN4330.2
            Uniprot:Q5B550
        Length = 724

 Score = 118 (46.6 bits), Expect = 3.9e-06, P = 3.9e-06
 Identities = 23/61 (37%), Positives = 39/61 (63%)

Query:    35 SDSFLFA-ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
             S S++   A +++D    +SKGYG+VTF+  E+A+ AL ++NG   +G+ I V+  +P  
Sbjct:    58 SQSYVIKHAVVVVDPKTKQSKGYGFVTFADVEDAKAALEELNGSTFEGKKIKVEYAQPRH 117

Query:    94 R 94
             R
Sbjct:   118 R 118


>TAIR|locus:2196521 [details] [associations]
            symbol:AT1G22330 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:AC068562 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 HSSP:P09651 HOGENOM:HOG000276232
            ProtClustDB:CLSN2689288 IPI:IPI00540466 PIR:B86356
            RefSeq:NP_564168.2 UniGene:At.41608 ProteinModelPortal:Q9LME7
            SMR:Q9LME7 STRING:Q9LME7 PRIDE:Q9LME7 EnsemblPlants:AT1G22330.1
            GeneID:838839 KEGG:ath:AT1G22330 TAIR:At1g22330 InParanoid:Q9LME7
            OMA:TESHAPQ PhylomeDB:Q9LME7 Genevestigator:Q9LME7 Uniprot:Q9LME7
        Length = 291

 Score = 112 (44.5 bits), Expect = 4.2e-06, P = 4.2e-06
 Identities = 29/78 (37%), Positives = 39/78 (50%)

Query:    36 DSF--LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
             D F  +  A II DK   +SKGYG+VTF   + A +A+AD N  ++DGR     N+    
Sbjct:    38 DQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPN-PVIDGRKANC-NIASFG 95

Query:    94 RYNTDAPLARQSAQSPEE 111
             R     P  R    SP +
Sbjct:    96 RPRPSTPRGRGQGGSPSQ 113


>UNIPROTKB|F1N4Q4 [details] [associations]
            symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
            CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
            RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
            Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
            NextBio:20869865 Uniprot:F1N4Q4
        Length = 382

 Score = 114 (45.2 bits), Expect = 4.2e-06, P = 4.2e-06
 Identities = 24/61 (39%), Positives = 39/61 (63%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLAR 103
             +I D    +SKG+G+V + T E AQKA+ D++GK +DG+V++V   R  ++    A L R
Sbjct:   230 VIRDSS-GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVG--RAQKKIERLAELRR 286

Query:   104 Q 104
             +
Sbjct:   287 R 287


>UNIPROTKB|Q96DU9 [details] [associations]
            symbol:PABPC5 "Polyadenylate-binding protein 5"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
            EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
            PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
            ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
            PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
            DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
            UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
            HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
            PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
            GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
            CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
            Uniprot:Q96DU9
        Length = 382

 Score = 114 (45.2 bits), Expect = 4.2e-06, P = 4.2e-06
 Identities = 24/61 (39%), Positives = 39/61 (63%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLAR 103
             +I D    +SKG+G+V + T E AQKA+ D++GK +DG+V++V   R  ++    A L R
Sbjct:   230 VIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVG--RAQKKIERLAELRR 286

Query:   104 Q 104
             +
Sbjct:   287 R 287


>UNIPROTKB|G4MYV6 [details] [associations]
            symbol:MGG_11418 "Nucleic acid-binding protein"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001232
            RefSeq:XP_003713424.1 ProteinModelPortal:G4MYV6
            EnsemblFungi:MGG_11418T0 GeneID:2676363 KEGG:mgr:MGG_11418
            Uniprot:G4MYV6
        Length = 279

 Score = 86 (35.3 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
 Identities = 24/69 (34%), Positives = 35/69 (50%)

Query:    42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV-DNVRPSRRYNTDAP 100
             A +  D  +  SKG+G++ F T E AQKA  + N     GR I V   ++ S+  N DA 
Sbjct:   102 AKVARD-ARGLSKGFGFIYFETPEAAQKACEEANNTFWHGRRINVAPRIKASKPGNRDA- 159

Query:   101 LARQSAQSP 109
                Q  ++P
Sbjct:   160 -MNQEERTP 167

 Score = 44 (20.5 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
 Identities = 8/13 (61%), Positives = 11/13 (84%)

Query:     2 LADAFSQFGQVTE 14
             LA+AFSQ+G V +
Sbjct:    89 LAEAFSQYGNVVD 101


>UNIPROTKB|Q96E39 [details] [associations]
            symbol:RBMXL1 "RNA binding motif protein, X-linked-like-1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097 GO:GO:0030529
            eggNOG:COG0724 EMBL:AL139416 HSSP:Q14103 UniGene:Hs.481898
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 KO:K12885 EMBL:AL832554 EMBL:BC012942 IPI:IPI00061178
            RefSeq:NP_001156008.1 RefSeq:NP_062556.2 ProteinModelPortal:Q96E39
            SMR:Q96E39 IntAct:Q96E39 STRING:Q96E39 PhosphoSite:Q96E39
            PaxDb:Q96E39 PRIDE:Q96E39 Ensembl:ENST00000321792
            Ensembl:ENST00000399794 GeneID:494115 KEGG:hsa:494115
            UCSC:uc001dms.3 CTD:494115 GeneCards:GC01M089446 HGNC:HGNC:25073
            neXtProt:NX_Q96E39 PharmGKB:PA165752300 OMA:STIYVEN
            PhylomeDB:Q96E39 GenomeRNAi:494115 NextBio:255993
            ArrayExpress:Q96E39 Bgee:Q96E39 Uniprot:Q96E39
        Length = 390

 Score = 114 (45.2 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 24/67 (35%), Positives = 38/67 (56%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV-RPSRRYNTDAPLA 102
             +I D+  N+S+G+ +VTF +  +A+ A  DMNGK LDG+ I V+   +PS       P  
Sbjct:    39 LIKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPP 98

Query:   103 RQSAQSP 109
                ++ P
Sbjct:    99 PPRSRGP 105


>WB|WBGene00007396 [details] [associations]
            symbol:tiar-3 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
            "calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
            membrane" evidence=IEA] [GO:0009792 "embryo development ending in
            birth or egg hatching" evidence=IMP] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
            RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
            EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
            UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
        Length = 450

 Score = 98 (39.6 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
 Identities = 18/43 (41%), Positives = 28/43 (65%)

Query:    42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVI 84
             A +I D    +SKGYG+V+F  ++ A+ A+A MNGK +  R +
Sbjct:   254 AKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGMNGKWIGKRAV 296

 Score = 37 (18.1 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
 Identities = 6/14 (42%), Positives = 11/14 (78%)

Query:     1 MLADAFSQFGQVTE 14
             +L   F++FG+V+E
Sbjct:   240 LLKSTFTKFGEVSE 253


>UNIPROTKB|E7ERJ7 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
            ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
            Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
            Bgee:E7ERJ7 Uniprot:E7ERJ7
        Length = 604

 Score = 116 (45.9 bits), Expect = 5.0e-06, P = 5.0e-06
 Identities = 24/67 (35%), Positives = 40/67 (59%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M     +SKG+G+V+F   E+AQKA+ +MNGK L+G+ I+V   R  ++      L R+
Sbjct:   190 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG--RAQKKVERQTELKRK 247

Query:   105 SAQSPEE 111
               Q  ++
Sbjct:   248 FEQMKQD 254

 Score = 112 (44.5 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 27/72 (37%), Positives = 44/72 (61%)

Query:    36 DSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRY 95
             D  L  + ++ D+  N SKGYG+V F T+E A++A+  MNG LL+ R +FV   + SR+ 
Sbjct:    90 DPSLRKSGVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK-SRK- 145

Query:    96 NTDAPLARQSAQ 107
               +A L  ++ +
Sbjct:   146 EREAELGARAKE 157

 Score = 108 (43.1 bits), Expect = 3.6e-05, P = 3.6e-05
 Identities = 25/67 (37%), Positives = 41/67 (61%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A ++M+ G  RSKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A 
Sbjct:   290 SAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV--ALAQRKEERQAH 345

Query:   101 LARQSAQ 107
             L  Q  Q
Sbjct:   346 LTNQYMQ 352


>UNIPROTKB|Q4VXU2 [details] [associations]
            symbol:PABPC1L "Polyadenylate-binding protein 1-like"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
            HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
            UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
            IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
            PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
            Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
            GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
            PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
            GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
            CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
        Length = 614

 Score = 101 (40.6 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
 Identities = 22/67 (32%), Positives = 35/67 (52%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M      S+ +G+V F   EEAQKA+  MNGK + GR+++    R  +R      L R+
Sbjct:   222 VMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAG--RAQKRVERQNELKRR 279

Query:   105 SAQSPEE 111
               Q  ++
Sbjct:   280 FEQMKQD 286

 Score = 101 (40.6 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
 Identities = 23/55 (41%), Positives = 36/55 (65%)

Query:    53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQSAQ 107
             S+G+G+V F T E AQ+A+  MNG LL+ R +FV + + SRR   +A L  ++ +
Sbjct:   137 SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFK-SRR-EREAELGARALE 189

 Score = 99 (39.9 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
 Identities = 23/63 (36%), Positives = 37/63 (58%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M +G   SKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A L  Q
Sbjct:   325 VMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV--ALAQRKEERKAILTNQ 381

Query:   105 SAQ 107
               Q
Sbjct:   382 YMQ 384

 Score = 37 (18.1 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
 Identities = 7/11 (63%), Positives = 9/11 (81%)

Query:     2 LADAFSQFGQV 12
             L D FSQFG++
Sbjct:   207 LQDLFSQFGKM 217

 Score = 32 (16.3 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   115 LYDTFSTFGNI 125


>UNIPROTKB|P0CB38 [details] [associations]
            symbol:PABPC4L "Polyadenylate-binding protein 4-like"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
            EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
            ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
            DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
            UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
            neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
            Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
        Length = 370

 Score = 112 (44.5 bits), Expect = 6.5e-06, P = 6.5e-06
 Identities = 23/67 (34%), Positives = 40/67 (59%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M     +SKG+G+V+F + E A+KA+ +MNG+ ++G++IFV   R  ++    A L + 
Sbjct:   221 VMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVG--RAQKKVERQAELKQM 278

Query:   105 SAQSPEE 111
               Q   E
Sbjct:   279 FEQLKRE 285

 Score = 94 (38.1 bits), Expect = 0.00059, P = 0.00059
 Identities = 20/55 (36%), Positives = 33/55 (60%)

Query:    53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQSAQ 107
             SKGY +V F  +  A +A+ +MNGKLL G  +FV   +   R + +A L  ++++
Sbjct:   136 SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFK--NRKDREAELRSKASE 188


>UNIPROTKB|H0Y6E7 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome,
            N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
            Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
            Uniprot:H0Y6E7
        Length = 292

 Score = 110 (43.8 bits), Expect = 6.9e-06, P = 6.9e-06
 Identities = 21/50 (42%), Positives = 34/50 (68%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV-RPS 92
             ++ D+  N+S+G+ +VTF +  +A+ A  DMNGK LDG+ I V+   +PS
Sbjct:    41 LMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPS 90


>UNIPROTKB|Q83CD7 [details] [associations]
            symbol:CBU_1183 "Glycine-rich RNA-binding protein"
            species:227377 "Coxiella burnetii RSA 493" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
            GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
            RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
            GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
            ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
            Uniprot:Q83CD7
        Length = 117

 Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 21/49 (42%), Positives = 33/49 (67%)

Query:    42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 90
             A +IMD+   RSKG+ ++T+ T++ AQ+A++  NG  L GR I V+  R
Sbjct:    47 AKLIMDRETGRSKGFAFITYGTQDAAQEAVSKANGIDLQGRKIRVNIAR 95


>TIGR_CMR|CBU_1183 [details] [associations]
            symbol:CBU_1183 "nucleic acid binding domain protein"
            species:227377 "Coxiella burnetii RSA 493" [GO:0008150
            "biological_process" evidence=ND] [GO:0003676 "nucleic acid
            binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
            GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
            RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
            GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
            ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
            Uniprot:Q83CD7
        Length = 117

 Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 21/49 (42%), Positives = 33/49 (67%)

Query:    42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 90
             A +IMD+   RSKG+ ++T+ T++ AQ+A++  NG  L GR I V+  R
Sbjct:    47 AKLIMDRETGRSKGFAFITYGTQDAAQEAVSKANGIDLQGRKIRVNIAR 95


>UNIPROTKB|H3BT71 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome,
            N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
            Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX ProteinModelPortal:H3BT71
            SMR:H3BT71 Ensembl:ENST00000562646 Bgee:H3BT71 Uniprot:H3BT71
        Length = 296

 Score = 110 (43.8 bits), Expect = 7.1e-06, P = 7.1e-06
 Identities = 21/50 (42%), Positives = 34/50 (68%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV-RPS 92
             ++ D+  N+S+G+ +VTF +  +A+ A  DMNGK LDG+ I V+   +PS
Sbjct:    39 LMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPS 88


>UNIPROTKB|K7GRX3 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 InterPro:IPR012604
            Pfam:PF08081 EMBL:FP102148 Ensembl:ENSSSCT00000035747
            Uniprot:K7GRX3
        Length = 306

 Score = 110 (43.8 bits), Expect = 7.6e-06, P = 7.6e-06
 Identities = 21/50 (42%), Positives = 34/50 (68%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV-RPS 92
             ++ D+  N+S+G+ +VTF +  +A+ A  DMNGK LDG+ I V+   +PS
Sbjct:    39 LMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPS 88


>UNIPROTKB|H0YEU6 [details] [associations]
            symbol:PABPC4 "Polyadenylate-binding protein 4"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
            Ensembl:ENST00000527718 Uniprot:H0YEU6
        Length = 249

 Score = 108 (43.1 bits), Expect = 8.1e-06, P = 8.1e-06
 Identities = 24/67 (35%), Positives = 41/67 (61%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A ++++ G  RSKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A 
Sbjct:    49 SAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV--ALAQRKEERKAH 104

Query:   101 LARQSAQ 107
             L  Q  Q
Sbjct:   105 LTNQYMQ 111


>UNIPROTKB|J3KTH5 [details] [associations]
            symbol:PABPC4L "Polyadenylate-binding protein 4-like"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
            EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
            RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
            Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
            Uniprot:J3KTH5
        Length = 428

 Score = 112 (44.5 bits), Expect = 8.3e-06, P = 8.3e-06
 Identities = 23/67 (34%), Positives = 40/67 (59%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M     +SKG+G+V+F + E A+KA+ +MNG+ ++G++IFV   R  ++    A L + 
Sbjct:   279 VMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVG--RAQKKVERQAELKQM 336

Query:   105 SAQSPEE 111
               Q   E
Sbjct:   337 FEQLKRE 343

 Score = 94 (38.1 bits), Expect = 0.00073, P = 0.00073
 Identities = 20/55 (36%), Positives = 33/55 (60%)

Query:    53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQSAQ 107
             SKGY +V F  +  A +A+ +MNGKLL G  +FV   +   R + +A L  ++++
Sbjct:   194 SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFK--NRKDREAELRSKASE 246


>UNIPROTKB|E1P5S2 [details] [associations]
            symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
            [GO:0015630 "microtubule cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
            UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
            SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
        Length = 373

 Score = 111 (44.1 bits), Expect = 8.5e-06, P = 8.5e-06
 Identities = 30/67 (44%), Positives = 39/67 (58%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLAR 103
             ++MD    RSKGYG++TFS  E A+KAL  +NG  L GR + V +V  + R  TDA  A 
Sbjct:   124 LMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV--TER--TDASSAS 179

Query:   104 QSAQSPE 110
                 S E
Sbjct:   180 SFLDSDE 186


>TAIR|locus:2079874 [details] [associations]
            symbol:CP33 "chloroplast RNA-binding protein 33"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
            "thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
            development ending in seed dormancy" evidence=RCA] [GO:0010027
            "thylakoid membrane organization" evidence=RCA] [GO:0010228
            "vegetative to reproductive phase transition of meristem"
            evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
            evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
            process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
            "ovule development" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
            eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
            UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
            EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
            ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
            PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
            KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
            PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
            Uniprot:Q39061
        Length = 329

 Score = 110 (43.8 bits), Expect = 8.7e-06, P = 8.7e-06
 Identities = 22/72 (30%), Positives = 42/72 (58%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             +  A +I ++   RS+G+G+++F + E  Q ALA MNG  ++GR + + N+   R   T 
Sbjct:   245 VLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRL-NLASEREKPTV 303

Query:    99 APLARQSAQSPE 110
             +P + +  ++ E
Sbjct:   304 SPPSVEEGETEE 315


>TAIR|locus:2019622 [details] [associations]
            symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
            "ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
            evidence=IDA] [GO:0010228 "vegetative to reproductive phase
            transition of meristem" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
            EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
            IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
            ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
            EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
            GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
            ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
        Length = 289

 Score = 90 (36.7 bits), Expect = 9.2e-06, Sum P(2) = 9.2e-06
 Identities = 20/46 (43%), Positives = 32/46 (69%)

Query:    42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
             A II+D+   RS+G+ +VTF++ EEA  A+  ++G+ L GR I V+
Sbjct:    63 AKIIVDRETGRSRGFAFVTFTSTEEASNAM-QLDGQDLHGRRIRVN 107

 Score = 37 (18.1 bits), Expect = 9.2e-06, Sum P(2) = 9.2e-06
 Identities = 6/13 (46%), Positives = 11/13 (84%)

Query:     2 LADAFSQFGQVTE 14
             L +AFS++G+V +
Sbjct:    50 LREAFSKYGEVVD 62


>UNIPROTKB|F1PJX5 [details] [associations]
            symbol:RBFOX3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
            OMA:LQASLCR EMBL:AAEX03006224 EMBL:AAEX03006225
            Ensembl:ENSCAFT00000008934 Uniprot:F1PJX5
        Length = 279

 Score = 94 (38.1 bits), Expect = 9.6e-06, Sum P(2) = 9.6e-06
 Identities = 17/36 (47%), Positives = 26/36 (72%)

Query:    53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 88
             SKG+G+VTF T  +A +A   +NG +++GR I V+N
Sbjct:    63 SKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNN 98

 Score = 32 (16.3 bits), Expect = 9.6e-06, Sum P(2) = 9.6e-06
 Identities = 6/18 (33%), Positives = 10/18 (55%)

Query:     2 LADAFSQFGQVTEDLVYF 19
             L   F QFG++ +  + F
Sbjct:    41 LRQMFGQFGKILDVEIIF 58


>UNIPROTKB|G3XAC6 [details] [associations]
            symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
            isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
            UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
            ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
            ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
        Length = 423

 Score = 111 (44.1 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 30/67 (44%), Positives = 39/67 (58%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLAR 103
             ++MD    RSKGYG++TFS  E A+KAL  +NG  L GR + V +V  + R  TDA  A 
Sbjct:   281 LMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV--TER--TDASSAS 336

Query:   104 QSAQSPE 110
                 S E
Sbjct:   337 SFLDSDE 343


>UNIPROTKB|F1M0Z9 [details] [associations]
            symbol:F1M0Z9 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0005844 GeneTree:ENSGT00700000104255 IPI:IPI00393308
            Ensembl:ENSRNOT00000034921 Uniprot:F1M0Z9
        Length = 71

 Score = 71 (30.1 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
 Identities = 15/52 (28%), Positives = 27/52 (51%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALA----DMNGKLLDGRVIFVDNVRP 91
             ++ D    RS+G+G+VTF+      K L     +++ K +D +V F    +P
Sbjct:    18 VMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQP 69

 Score = 42 (19.8 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query:     2 LADAFSQFGQVTEDLV 17
             L D FS+FG++ E +V
Sbjct:     3 LRDYFSKFGEIRECMV 18


>UNIPROTKB|F1NZD3 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 GO:GO:0070062 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0006366 GO:GO:0006509 GO:GO:0005719 GO:GO:0071347
            GO:GO:0071013 GO:GO:0000381 GeneTree:ENSGT00700000104336
            InterPro:IPR012604 Pfam:PF08081 OMA:PFFKGMS EMBL:AADN02013316
            EMBL:AADN02013317 IPI:IPI00575141 Ensembl:ENSGALT00000010428
            Uniprot:F1NZD3
        Length = 385

 Score = 110 (43.8 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 21/50 (42%), Positives = 34/50 (68%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV-RPS 92
             ++ D+  N+S+G+ +VTF +  +A+ A  DMNGK LDG+ I V+   +PS
Sbjct:    39 LMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPS 88


>WB|WBGene00003902 [details] [associations]
            symbol:pab-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0040010 "positive regulation of growth
            rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
            [GO:0009792 "embryo development ending in birth or egg hatching"
            evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
            evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
            [GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
            [GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
            "receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
            evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
            "P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
            body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
            GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
            GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
            GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
            GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
            NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
            ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
            MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
            EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
            EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
            EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
            WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
            ArrayExpress:Q9U302 Uniprot:Q9U302
        Length = 646

 Score = 113 (44.8 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 22/46 (47%), Positives = 30/46 (65%)

Query:    53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             SKGYG+V F TEE AQ A+  +NG LL G+ +FV   +P  + N +
Sbjct:   159 SKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRE 204


>MGI|MGI:1343045 [details] [associations]
            symbol:Rbmxl1 "RNA binding motif protein, X linked-like-1"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
            evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003682 "chromatin binding" evidence=IDA] [GO:0003723 "RNA
            binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0006376 "mRNA splice site
            selection" evidence=ISO] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0044530
            "supraspliceosomal complex" evidence=ISO] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IMP;IDA] [GO:0048025 "negative regulation of mRNA
            splicing, via spliceosome" evidence=ISO] [GO:0048026 "positive
            regulation of mRNA splicing, via spliceosome" evidence=ISO]
            [GO:0051260 "protein homooligomerization" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1343045 GO:GO:0008380 GO:GO:0000166
            GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682 GO:GO:0006366
            GO:GO:0006509 GO:GO:0001047 GO:GO:0005719 GO:GO:0071347
            GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026
            GO:GO:0000381 GO:GO:0044530 HSSP:Q61474
            GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
            CTD:494115 EMBL:AF031568 EMBL:AK041927 EMBL:BC011441 EMBL:BC089350
            IPI:IPI00663587 RefSeq:NP_001239018.1 RefSeq:NP_033059.2
            UniGene:Mm.24718 ProteinModelPortal:Q91VM5 SMR:Q91VM5 IntAct:Q91VM5
            STRING:Q91VM5 PhosphoSite:Q91VM5 PaxDb:Q91VM5 PRIDE:Q91VM5
            Ensembl:ENSMUST00000049245 GeneID:19656 KEGG:mmu:19656
            UCSC:uc009mhz.1 InParanoid:Q91VM5 OMA:ILLMKDR OrthoDB:EOG4001KF
            NextBio:296934 Bgee:Q91VM5 Genevestigator:Q91VM5 Uniprot:Q91VM5
        Length = 388

 Score = 110 (43.8 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 21/50 (42%), Positives = 34/50 (68%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV-RPS 92
             ++ D+  N+S+G+ +VTF +  +A+ A  DMNGK LDG+ I V+   +PS
Sbjct:    39 LMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPS 88


>UNIPROTKB|F1RQ90 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0071347 "cellular response to interleukin-1"
            evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0070062 "extracellular vesicular exosome"
            evidence=IEA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0044530
            "supraspliceosomal complex" evidence=IEA] [GO:0006509 "membrane
            protein ectodomain proteolysis" evidence=IEA] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003729 "mRNA
            binding" evidence=IEA] [GO:0003682 "chromatin binding"
            evidence=IEA] [GO:0001047 "core promoter binding" evidence=IEA]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0070062
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006366 GO:GO:0006509
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0000381
            GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
            CTD:27316 KO:K12885 OMA:PFFKGMS EMBL:FP102148 RefSeq:NP_001231025.1
            UniGene:Ssc.97220 Ensembl:ENSSSCT00000013889
            Ensembl:ENSSSCT00000034598 GeneID:100158042 KEGG:ssc:100158042
            Uniprot:F1RQ90
        Length = 390

 Score = 110 (43.8 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 21/50 (42%), Positives = 34/50 (68%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV-RPS 92
             ++ D+  N+S+G+ +VTF +  +A+ A  DMNGK LDG+ I V+   +PS
Sbjct:    39 LMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPS 88


>RGD|1565256 [details] [associations]
            symbol:Rbmx "RNA binding motif protein, X-linked" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
            evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
            [GO:0003723 "RNA binding" evidence=ISO] [GO:0003727
            "single-stranded RNA binding" evidence=IDA] [GO:0003729 "mRNA
            binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal
            complex" evidence=IDA] [GO:0005719 "nuclear euchromatin"
            evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISO] [GO:0006376 "mRNA splice site selection"
            evidence=IMP] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=ISO] [GO:0044530 "supraspliceosomal complex" evidence=ISO]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=IMP] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISO] [GO:0070062
            "extracellular vesicular exosome" evidence=ISO] [GO:0071013
            "catalytic step 2 spliceosome" evidence=ISO] [GO:0071347 "cellular
            response to interleukin-1" evidence=ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1565256 GO:GO:0045893 GO:GO:0000166 GO:GO:0003727
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681 eggNOG:COG0724
            GO:GO:0006376 EMBL:CH474106 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 CTD:27316 KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK
            EMBL:BC097479 IPI:IPI00370207 RefSeq:NP_001020834.1
            UniGene:Rn.229269 ProteinModelPortal:Q4V898 SMR:Q4V898
            STRING:Q4V898 PhosphoSite:Q4V898 PRIDE:Q4V898
            Ensembl:ENSRNOT00000001154 GeneID:302855 KEGG:rno:302855
            InParanoid:Q4V898 NextBio:650249 Genevestigator:Q4V898
            Uniprot:Q4V898
        Length = 390

 Score = 110 (43.8 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 21/50 (42%), Positives = 34/50 (68%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV-RPS 92
             ++ D+  N+S+G+ +VTF +  +A+ A  DMNGK LDG+ I V+   +PS
Sbjct:    39 LMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPS 88


>UNIPROTKB|D3JUI8 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome,
            N-terminally processed" species:9913 "Bos taurus" [GO:0071347
            "cellular response to interleukin-1" evidence=IEA] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IEA] [GO:0070062
            "extracellular vesicular exosome" evidence=IEA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0044530 "supraspliceosomal complex"
            evidence=IEA] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0005719 "nuclear euchromatin"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0003682
            "chromatin binding" evidence=IEA] [GO:0001047 "core promoter
            binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 InterPro:IPR012604 Pfam:PF08081 CTD:27316
            KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:DAAA02067753
            EMBL:GU304600 IPI:IPI00706784 RefSeq:NP_001165510.1 UniGene:Bt.7342
            Ensembl:ENSBTAT00000017696 GeneID:509591 KEGG:bta:509591
            NextBio:20869035 Uniprot:D3JUI8
        Length = 391

 Score = 110 (43.8 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 21/50 (42%), Positives = 34/50 (68%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV-RPS 92
             ++ D+  N+S+G+ +VTF +  +A+ A  DMNGK LDG+ I V+   +PS
Sbjct:    39 LMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPS 88


>UNIPROTKB|P38159 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
            [GO:0044530 "supraspliceosomal complex" evidence=IDA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0001047 "core promoter binding"
            evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=IDA] [GO:0071347 "cellular response to interleukin-1"
            evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
            evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0048025 "negative regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0006366 "transcription from
            RNA polymerase II promoter" evidence=IDA] [GO:0005719 "nuclear
            euchromatin" evidence=IDA] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=ISS] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
            "gene expression" evidence=TAS] Reactome:REACT_71
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005654 GO:GO:0000166 GO:GO:0070062
            GO:GO:0051260 Reactome:REACT_1675 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
            GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0000398
            GO:GO:0071013 EMBL:AL683813 EMBL:CH471150 GO:GO:0048025
            eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
            KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:Z23064 EMBL:AF266723
            EMBL:AF266720 EMBL:AF266721 EMBL:AF266722 EMBL:AY464692
            EMBL:AK096015 EMBL:AK304868 EMBL:BC006550 EMBL:BC007435
            IPI:IPI00304692 IPI:IPI00552938 RefSeq:NP_001158275.1
            RefSeq:NP_002130.2 UniGene:Hs.380118 UniGene:Hs.710162
            ProteinModelPortal:P38159 SMR:P38159 DIP:DIP-34447N IntAct:P38159
            MINT:MINT-5000999 STRING:P38159 PhosphoSite:P38159 DMDM:23503093
            SWISS-2DPAGE:P38159 PaxDb:P38159 PRIDE:P38159 DNASU:27316
            Ensembl:ENST00000320676 Ensembl:ENST00000431446 GeneID:27316
            KEGG:hsa:27316 UCSC:uc004fad.1 GeneCards:GC0XM135951 HGNC:HGNC:9910
            MIM:300199 neXtProt:NX_P38159 PharmGKB:PA34277 HOGENOM:HOG000070250
            InParanoid:P38159 PhylomeDB:P38159 ChiTaRS:RBMX GenomeRNAi:27316
            NextBio:50322 ArrayExpress:P38159 Bgee:P38159 CleanEx:HS_RBMX
            Genevestigator:P38159 GermOnline:ENSG00000147274 Uniprot:P38159
        Length = 391

 Score = 110 (43.8 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 21/50 (42%), Positives = 34/50 (68%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV-RPS 92
             ++ D+  N+S+G+ +VTF +  +A+ A  DMNGK LDG+ I V+   +PS
Sbjct:    39 LMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPS 88


>UNIPROTKB|A5A6M3 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9598 "Pan troglodytes" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
            GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
            GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
            GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724
            GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
            KO:K12885 EMBL:AB222151 RefSeq:NP_001128678.1 UniGene:Ptr.2579
            ProteinModelPortal:A5A6M3 SMR:A5A6M3 PRIDE:A5A6M3 GeneID:738482
            KEGG:ptr:738482 NextBio:20905775 Uniprot:A5A6M3
        Length = 391

 Score = 110 (43.8 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 21/50 (42%), Positives = 34/50 (68%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV-RPS 92
             ++ D+  N+S+G+ +VTF +  +A+ A  DMNGK LDG+ I V+   +PS
Sbjct:    39 LMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPS 88


>UNIPROTKB|Q4R7F0 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9541 "Macaca fascicularis" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
            GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
            GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
            GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 GO:GO:0048026
            GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 EMBL:AB168869 ProteinModelPortal:Q4R7F0 SMR:Q4R7F0
            Uniprot:Q4R7F0
        Length = 391

 Score = 110 (43.8 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 21/50 (42%), Positives = 34/50 (68%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV-RPS 92
             ++ D+  N+S+G+ +VTF +  +A+ A  DMNGK LDG+ I V+   +PS
Sbjct:    39 LMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPS 88


>MGI|MGI:1343044 [details] [associations]
            symbol:Rbmx "RNA binding motif protein, X chromosome"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
            evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003682 "chromatin binding" evidence=ISO] [GO:0003723 "RNA
            binding" evidence=ISO] [GO:0003727 "single-stranded RNA binding"
            evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
            evidence=ISO] [GO:0005719 "nuclear euchromatin" evidence=ISO]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISO] [GO:0006376 "mRNA splice site selection"
            evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISO]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0044530
            "supraspliceosomal complex" evidence=ISO] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=ISO]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISO] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISO] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISO] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343044
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
            EMBL:CH466583 HSSP:Q61474 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 CTD:27316 KO:K12885 ChiTaRS:RBMX EMBL:AJ237846
            EMBL:AJ237847 EMBL:AK087940 EMBL:AK135164 EMBL:AK165006
            EMBL:AL672106 EMBL:BC003710 IPI:IPI00124979 RefSeq:NP_001160095.1
            RefSeq:NP_035382.1 UniGene:Mm.28275 ProteinModelPortal:Q9WV02
            SMR:Q9WV02 IntAct:Q9WV02 STRING:Q9WV02 PhosphoSite:Q9WV02
            PRIDE:Q9WV02 Ensembl:ENSMUST00000114726 Ensembl:ENSMUST00000114730
            Ensembl:ENSMUST00000140384 GeneID:19655 KEGG:mmu:19655
            UCSC:uc009thi.2 InParanoid:Q9R0Y0 NextBio:296930 Bgee:Q9WV02
            Genevestigator:Q9WV02 Uniprot:Q9WV02
        Length = 391

 Score = 110 (43.8 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 21/50 (42%), Positives = 34/50 (68%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV-RPS 92
             ++ D+  N+S+G+ +VTF +  +A+ A  DMNGK LDG+ I V+   +PS
Sbjct:    39 LMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPS 88


>UNIPROTKB|E2R068 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
            OMA:PFFKGMS EMBL:AAEX03026954 Ensembl:ENSCAFT00000030124
            Uniprot:E2R068
        Length = 392

 Score = 110 (43.8 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 21/50 (42%), Positives = 34/50 (68%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV-RPS 92
             ++ D+  N+S+G+ +VTF +  +A+ A  DMNGK LDG+ I V+   +PS
Sbjct:    40 LMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPS 89


>ZFIN|ZDB-GENE-030131-579 [details] [associations]
            symbol:rbmx "RNA binding motif protein, X-linked"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=ISS] [GO:0044530 "supraspliceosomal complex" evidence=ISS]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISS] [GO:0048025 "negative
            regulation of mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0051260 "protein homooligomerization"
            evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=IEA;ISS] [GO:0003729 "mRNA binding" evidence=ISS]
            [GO:0070062 "extracellular vesicular exosome" evidence=ISS]
            [GO:0071347 "cellular response to interleukin-1" evidence=ISS]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005681
            "spliceosomal complex" evidence=IEA] [GO:0007275 "multicellular
            organismal development" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-579
            GO:GO:0007275 GO:GO:0008380 GO:GO:0000166 GO:GO:0070062
            GO:GO:0051260 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
            GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
            GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
            GO:GO:0044530 HSSP:Q14103 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 EMBL:AJ717349 EMBL:AY394938 EMBL:AL929434
            EMBL:BC049509 EMBL:BC071326 IPI:IPI00509177 RefSeq:NP_997763.1
            UniGene:Dr.76840 ProteinModelPortal:Q7ZWA3 SMR:Q7ZWA3 STRING:Q7ZWA3
            PRIDE:Q7ZWA3 Ensembl:ENSDART00000007927 Ensembl:ENSDART00000131024
            GeneID:321860 KEGG:dre:321860 CTD:27316 InParanoid:Q6TLG7 KO:K12885
            OMA:PFFKGMS OrthoDB:EOG4CNQSK NextBio:20807559 ArrayExpress:Q7ZWA3
            Bgee:Q7ZWA3 Uniprot:Q7ZWA3
        Length = 379

 Score = 94 (38.1 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
 Identities = 17/44 (38%), Positives = 30/44 (68%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
             ++ D+  N+S+G+ +VT+    +A+ A  +MNGK LDG+ I V+
Sbjct:    39 LMKDRETNKSRGFAFVTYENPGDAKDAAREMNGKPLDGKPIKVE 82

 Score = 35 (17.4 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
 Identities = 6/12 (50%), Positives = 11/12 (91%)

Query:     6 FSQFGQVTEDLV 17
             FS+FG+++E L+
Sbjct:    28 FSKFGRISEVLL 39


>DICTYBASE|DDB_G0283687 [details] [associations]
            symbol:DDB_G0283687 "RNA-binding region RNP-1
            domain-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            dictyBase:DDB_G0283687 EMBL:AAFI02000056 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13091
            RefSeq:XP_638966.1 ProteinModelPortal:Q54QQ7
            EnsemblProtists:DDB0233350 GeneID:8624212 KEGG:ddi:DDB_G0283687
            InParanoid:Q54QQ7 OMA:VDINIDE Uniprot:Q54QQ7
        Length = 727

 Score = 113 (44.8 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 27/66 (40%), Positives = 40/66 (60%)

Query:    34 ISDSFLFAATI-----IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 88
             +SD F  A T+     I DK   R KG GYV FS +E   KA+A ++G +LDG+ I V +
Sbjct:   282 LSDLFSQAGTVLNVRLITDKVTKRMKGVGYVEFSQKEMVDKAIA-LSGSVLDGQQILVHS 340

Query:    89 VRPSRR 94
             ++P ++
Sbjct:   341 IQPEKK 346


>UNIPROTKB|A6NFN3 [details] [associations]
            symbol:RBFOX3 "RNA binding protein fox-1 homolog 3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0043025 "neuronal cell body" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
            GO:GO:0000166 GO:GO:0003677 GO:GO:0043025 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000381 eggNOG:NOG258617
            KO:K14946 HOVERGEN:HBG000044 InterPro:IPR025670 Pfam:PF12414
            CTD:146713 EMBL:AK293617 EMBL:AC021534 EMBL:AC073624
            IPI:IPI00908333 RefSeq:NP_001076044.1 UniGene:Hs.135229
            ProteinModelPortal:A6NFN3 SMR:A6NFN3 STRING:A6NFN3 PaxDb:A6NFN3
            PRIDE:A6NFN3 Ensembl:ENST00000415831 Ensembl:ENST00000453134
            Ensembl:ENST00000580155 GeneID:146713 KEGG:hsa:146713
            UCSC:uc010dhs.3 GeneCards:GC17M077086 HGNC:HGNC:27097 HPA:HPA030790
            neXtProt:NX_A6NFN3 HOGENOM:HOG000230971 GenomeRNAi:146713
            NextBio:85428 ArrayExpress:A6NFN3 Bgee:A6NFN3 Genevestigator:A6NFN3
            Uniprot:A6NFN3
        Length = 312

 Score = 94 (38.1 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
 Identities = 17/36 (47%), Positives = 26/36 (72%)

Query:    53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 88
             SKG+G+VTF T  +A +A   +NG +++GR I V+N
Sbjct:   137 SKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNN 172

 Score = 32 (16.3 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
 Identities = 6/18 (33%), Positives = 10/18 (55%)

Query:     2 LADAFSQFGQVTEDLVYF 19
             L   F QFG++ +  + F
Sbjct:   115 LRQMFGQFGKILDVEIIF 132


>TAIR|locus:2124261 [details] [associations]
            symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
            "translation initiation factor activity" evidence=ISS] [GO:0009651
            "response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
            "translational initiation" evidence=ISS] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
            GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
            EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
            EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
            UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
            STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
            EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
            TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
            ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
            Uniprot:P42731
        Length = 629

 Score = 102 (41.0 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
 Identities = 21/58 (36%), Positives = 35/58 (60%)

Query:    29 LHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
             LH    S   + +  + +D    +SKGYG+V ++ EE AQKA+  +NG LL+ + ++V
Sbjct:   140 LHDTFSSFGNIVSCKVAVDSS-GQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196

 Score = 91 (37.1 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
 Identities = 15/57 (26%), Positives = 31/57 (54%)

Query:    42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             + ++M  G+ +SKG+G+V F   ++A +A+  +NG   D +  +V   +      T+
Sbjct:   243 SAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETE 299

 Score = 91 (37.1 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
 Identities = 22/73 (30%), Positives = 41/73 (56%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV-------DN-VRPSRRYN 96
             +M      SKG G+V F+T EEA +A++ ++GK+++ + ++V       D  VR   +++
Sbjct:   349 VMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFS 408

Query:    97 TDAPLARQSAQSP 109
                P+A Q +  P
Sbjct:   409 QVRPVAMQPSVGP 421

 Score = 37 (18.1 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
 Identities = 6/16 (37%), Positives = 12/16 (75%)

Query:     2 LADAFSQFGQVTEDLV 17
             L +AF ++G++T  +V
Sbjct:   231 LKNAFGEYGKITSAVV 246

 Score = 35 (17.4 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
 Identities = 8/16 (50%), Positives = 9/16 (56%)

Query:     2 LADAFSQFGQVTEDLV 17
             L + FS FG VT   V
Sbjct:   334 LKEIFSPFGTVTSSKV 349

 Score = 33 (16.7 bits), Expect = 0.00016, Sum P(2) = 0.00016
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   140 LHDTFSSFGNI 150

 Score = 32 (16.3 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
 Identities = 7/11 (63%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L DAF Q G V
Sbjct:    52 LFDAFGQMGTV 62


>RGD|1310071 [details] [associations]
            symbol:Rbm39 "RNA binding motif protein 39" species:10116
            "Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
            "centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
            evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
            GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
            HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
            KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
            KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
            RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
            GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
            NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
        Length = 524

 Score = 111 (44.1 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 30/67 (44%), Positives = 39/67 (58%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLAR 103
             ++MD    RSKGYG++TFS  E A+KAL  +NG  L GR + V +V  + R  TDA  A 
Sbjct:   281 LMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV--TER--TDASSAS 336

Query:   104 QSAQSPE 110
                 S E
Sbjct:   337 SFLDSDE 343


>UNIPROTKB|J9PAH3 [details] [associations]
            symbol:RBFOX3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
            EMBL:AAEX03006224 EMBL:AAEX03006225 Ensembl:ENSCAFT00000046179
            Uniprot:J9PAH3
        Length = 314

 Score = 94 (38.1 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
 Identities = 17/36 (47%), Positives = 26/36 (72%)

Query:    53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 88
             SKG+G+VTF T  +A +A   +NG +++GR I V+N
Sbjct:    78 SKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNN 113

 Score = 32 (16.3 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
 Identities = 6/18 (33%), Positives = 10/18 (55%)

Query:     2 LADAFSQFGQVTEDLVYF 19
             L   F QFG++ +  + F
Sbjct:    56 LRQMFGQFGKILDVEIIF 73


>UNIPROTKB|F6QIA5 [details] [associations]
            symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
            GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
            Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
        Length = 525

 Score = 111 (44.1 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 30/67 (44%), Positives = 39/67 (58%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLAR 103
             ++MD    RSKGYG++TFS  E A+KAL  +NG  L GR + V +V  + R  TDA  A 
Sbjct:   281 LMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV--TER--TDASSAS 336

Query:   104 QSAQSPE 110
                 S E
Sbjct:   337 SFLDSDE 343


>UNIPROTKB|F2Z5I2 [details] [associations]
            symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
            GeneTree:ENSGT00690000102089 EMBL:CU210870
            Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
        Length = 525

 Score = 111 (44.1 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 30/67 (44%), Positives = 39/67 (58%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLAR 103
             ++MD    RSKGYG++TFS  E A+KAL  +NG  L GR + V +V  + R  TDA  A 
Sbjct:   281 LMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV--TER--TDASSAS 336

Query:   104 QSAQSPE 110
                 S E
Sbjct:   337 SFLDSDE 343


>UNIPROTKB|E1BRU3 [details] [associations]
            symbol:LOC100858247 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
            OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
            IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
        Length = 529

 Score = 111 (44.1 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 30/67 (44%), Positives = 39/67 (58%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLAR 103
             ++MD    RSKGYG++TFS  E A+KAL  +NG  L GR + V +V  + R  TDA  A 
Sbjct:   281 LMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV--TER--TDASSAS 336

Query:   104 QSAQSPE 110
                 S E
Sbjct:   337 SFLDSDE 343


>UNIPROTKB|E2R4L0 [details] [associations]
            symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
            CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
            EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
            SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
            KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
        Length = 530

 Score = 111 (44.1 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 30/67 (44%), Positives = 39/67 (58%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLAR 103
             ++MD    RSKGYG++TFS  E A+KAL  +NG  L GR + V +V  + R  TDA  A 
Sbjct:   281 LMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV--TER--TDASSAS 336

Query:   104 QSAQSPE 110
                 S E
Sbjct:   337 SFLDSDE 343


>UNIPROTKB|Q14498 [details] [associations]
            symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
            [GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
            "centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
            GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
            eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
            EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
            EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
            PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
            RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
            PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
            MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
            PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
            Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
            KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
            GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
            neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
            InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
            PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
            GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
            CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
            Uniprot:Q14498
        Length = 530

 Score = 111 (44.1 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 30/67 (44%), Positives = 39/67 (58%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLAR 103
             ++MD    RSKGYG++TFS  E A+KAL  +NG  L GR + V +V  + R  TDA  A 
Sbjct:   281 LMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV--TER--TDASSAS 336

Query:   104 QSAQSPE 110
                 S E
Sbjct:   337 SFLDSDE 343


>MGI|MGI:2157953 [details] [associations]
            symbol:Rbm39 "RNA binding motif protein 39" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
            "transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
            DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
            GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
            EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
            EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
            HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
            ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
            EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
            IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
            UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
            PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
            STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
            Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
            Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
            GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
            EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
            CleanEx:MM_RBM39 Genevestigator:Q8VH51
            GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
        Length = 530

 Score = 111 (44.1 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 30/67 (44%), Positives = 39/67 (58%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLAR 103
             ++MD    RSKGYG++TFS  E A+KAL  +NG  L GR + V +V  + R  TDA  A 
Sbjct:   281 LMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV--TER--TDASSAS 336

Query:   104 QSAQSPE 110
                 S E
Sbjct:   337 SFLDSDE 343


>UNIPROTKB|F1MA64 [details] [associations]
            symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
            KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
            IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
            SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
            KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
        Length = 530

 Score = 111 (44.1 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 30/67 (44%), Positives = 39/67 (58%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLAR 103
             ++MD    RSKGYG++TFS  E A+KAL  +NG  L GR + V +V  + R  TDA  A 
Sbjct:   281 LMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV--TER--TDASSAS 336

Query:   104 QSAQSPE 110
                 S E
Sbjct:   337 SFLDSDE 343


>UNIPROTKB|F1PQV8 [details] [associations]
            symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
            GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
            EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
            Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
            Uniprot:F1PQV8
        Length = 382

 Score = 109 (43.4 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 23/61 (37%), Positives = 39/61 (63%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLAR 103
             +I D    +SKG+G+V + T E AQKA+ D++GK ++G+V++V   R  ++    A L R
Sbjct:   230 VIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVG--RAQKKIERLAELRR 286

Query:   104 Q 104
             +
Sbjct:   287 R 287


>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
            symbol:PFL1170w "polyadenylate-binding protein,
            putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
            binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
            [GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
            ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
            MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
            KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
            ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
        Length = 875

 Score = 104 (41.7 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
 Identities = 18/46 (39%), Positives = 37/46 (80%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
             +A ++ D+ K +SKG+G+V F+++EEA KA+ +M+ K+++G+ ++V
Sbjct:   478 SAKVMRDE-KEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYV 522

 Score = 33 (16.7 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   120 LFDTFSMFGNI 130

 Score = 33 (16.7 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
 Identities = 6/13 (46%), Positives = 8/13 (61%)

Query:     1 MLADAFSQFGQVT 13
             ML + F  FG +T
Sbjct:   465 MLRELFEPFGTIT 477

 Score = 32 (16.3 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
 Identities = 7/30 (23%), Positives = 16/30 (53%)

Query:     2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHY 31
             L   F+ +G++T  +V    K++    ++Y
Sbjct:   209 LRQLFNPYGEITSMIVKMDNKNRKFCFINY 238


>UNIPROTKB|Q8I5H4 [details] [associations]
            symbol:PFL1170w "Polyadenylate-binding protein, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
            binding" evidence=ISS] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
            "poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
            ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
            MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
            KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
            ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
        Length = 875

 Score = 104 (41.7 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
 Identities = 18/46 (39%), Positives = 37/46 (80%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
             +A ++ D+ K +SKG+G+V F+++EEA KA+ +M+ K+++G+ ++V
Sbjct:   478 SAKVMRDE-KEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYV 522

 Score = 33 (16.7 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query:     2 LADAFSQFGQV 12
             L D FS FG +
Sbjct:   120 LFDTFSMFGNI 130

 Score = 33 (16.7 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
 Identities = 6/13 (46%), Positives = 8/13 (61%)

Query:     1 MLADAFSQFGQVT 13
             ML + F  FG +T
Sbjct:   465 MLRELFEPFGTIT 477

 Score = 32 (16.3 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
 Identities = 7/30 (23%), Positives = 16/30 (53%)

Query:     2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHY 31
             L   F+ +G++T  +V    K++    ++Y
Sbjct:   209 LRQLFNPYGEITSMIVKMDNKNRKFCFINY 238


>UNIPROTKB|Q29RT0 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9913 "Bos taurus" [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0048026 "positive regulation of
            mRNA splicing, via spliceosome" evidence=ISS] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0001047 "core promoter binding" evidence=ISS]
            [GO:0070062 "extracellular vesicular exosome" evidence=ISS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0048025 "negative regulation
            of mRNA splicing, via spliceosome" evidence=ISS] [GO:0071013
            "catalytic step 2 spliceosome" evidence=ISS] [GO:0005719 "nuclear
            euchromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0071347 "cellular
            response to interleukin-1" evidence=ISS] [GO:0006509 "membrane
            protein ectodomain proteolysis" evidence=ISS] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
            GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
            GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
            eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
            EMBL:BC114040 IPI:IPI00721392 RefSeq:NP_001040075.1
            RefSeq:XP_001250252.1 UniGene:Bt.59490 ProteinModelPortal:Q29RT0
            SMR:Q29RT0 Ensembl:ENSBTAT00000066112 GeneID:617969 GeneID:782306
            KEGG:bta:617969 KEGG:bta:782306 CTD:27288
            GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InParanoid:Q29RT0 OMA:GDFDLRP OrthoDB:EOG4WSWBK
            NextBio:20900925 InterPro:IPR012604 Pfam:PF08081 Uniprot:Q29RT0
        Length = 396

 Score = 109 (43.4 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 23/67 (34%), Positives = 40/67 (59%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV-RPS-RRYNTDAPL 101
             ++ D+  N+S+G+ ++TF +  +A+ A+ DMNGK LDG+ I V    +P+        PL
Sbjct:    39 LMKDRETNKSRGFAFITFESPADAKAAVRDMNGKSLDGKAIKVAQATKPAFESGRRGPPL 98

Query:   102 ARQSAQS 108
             +R   +S
Sbjct:    99 SRSRGRS 105


>UNIPROTKB|B4DF29 [details] [associations]
            symbol:RBFOX3 "RNA binding protein fox-1 homolog"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0043484 "regulation of RNA splicing"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
            Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484 HOVERGEN:HBG000044
            InterPro:IPR025670 Pfam:PF12414 EMBL:AC021534 EMBL:AC073624
            IPI:IPI00908333 UniGene:Hs.135229 HGNC:HGNC:27097
            HOGENOM:HOG000230971 EMBL:AC020689 EMBL:AC027824 EMBL:AC055858
            EMBL:AC142247 EMBL:AK293905 ProteinModelPortal:B4DF29 STRING:B4DF29
            Ensembl:ENST00000584778 UCSC:uc010wua.2 ArrayExpress:B4DF29
            Bgee:B4DF29 Uniprot:B4DF29
        Length = 325

 Score = 94 (38.1 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
 Identities = 17/36 (47%), Positives = 26/36 (72%)

Query:    53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 88
             SKG+G+VTF T  +A +A   +NG +++GR I V+N
Sbjct:   137 SKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNN 172

 Score = 32 (16.3 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
 Identities = 6/18 (33%), Positives = 10/18 (55%)

Query:     2 LADAFSQFGQVTEDLVYF 19
             L   F QFG++ +  + F
Sbjct:   115 LRQMFGQFGKILDVEIIF 132


>TAIR|locus:2012161 [details] [associations]
            symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
            "translation initiation factor activity" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
            evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
            biosynthetic process" evidence=RCA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
            GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
            EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
            RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
            UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
            SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
            ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
            GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
            OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
        Length = 671

 Score = 101 (40.6 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
 Identities = 22/68 (32%), Positives = 38/68 (55%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLAR 103
             +IM  G+ +SKG+G+V F   ++A +A+  +NGK  D +  FV   +      T+  L +
Sbjct:   254 VIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETE--LKQ 311

Query:   104 QSAQSPEE 111
             +  QS +E
Sbjct:   312 KFEQSLKE 319

 Score = 93 (37.8 bits), Expect = 0.00011, Sum P(2) = 0.00011
 Identities = 23/53 (43%), Positives = 33/53 (62%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD-NVR-PSRR 94
             +  D    RS GYGYV ++T ++A +AL ++N   L+GR I V  +VR PS R
Sbjct:    76 VCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRVMYSVRDPSLR 128

 Score = 93 (37.8 bits), Expect = 0.00011, Sum P(2) = 0.00011
 Identities = 21/55 (38%), Positives = 34/55 (61%)

Query:    53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQSAQ 107
             S+G G+V FST EEA +A+ +MNGK++  + ++V      R+ +  A L  Q +Q
Sbjct:   366 SRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYV--ALAQRKEDRKARLQAQFSQ 418

 Score = 91 (37.1 bits), Expect = 0.00018, Sum P(2) = 0.00018
 Identities = 17/48 (35%), Positives = 31/48 (64%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
             + +  + +D    +SKGYG+V + T+E AQ A+  +NG LL+ + ++V
Sbjct:   159 ILSCKVAVDPS-GQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205

 Score = 33 (16.7 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
 Identities = 7/11 (63%), Positives = 9/11 (81%)

Query:     2 LADAFSQFGQV 12
             L +AF+Q GQV
Sbjct:    61 LFEAFTQAGQV 71


>DICTYBASE|DDB_G0275027 [details] [associations]
            symbol:DDB_G0275027 "SRA stem-loop-interacting
            RNA-binding protein, mitochondrial" species:44689 "Dictyostelium
            discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
            "macropinocytosis" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            dictyBase:DDB_G0275027 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724
            ProtClustDB:CLSZ2430003 RefSeq:XP_643856.1
            ProteinModelPortal:Q86I71 PRIDE:Q86I71 EnsemblProtists:DDB0167377
            GeneID:8619907 KEGG:ddi:DDB_G0275027 InParanoid:Q86I71 OMA:QFESKES
            Uniprot:Q86I71
        Length = 91

 Score = 78 (32.5 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
 Identities = 17/57 (29%), Positives = 33/57 (57%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +++D+   RSKG+G+V F ++E  Q A+   N   ++GR + V N   ++ +  + P
Sbjct:    35 VVLDRVTKRSKGFGFVQFESKESVQNAINSDNE--INGRKLVV-NEALAKDFKENTP 88

 Score = 33 (16.7 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query:     2 LADAFSQFGQVTE 14
             L + FSQFG + +
Sbjct:    20 LKNHFSQFGNIKD 32


>MGI|MGI:1100851 [details] [associations]
            symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
            1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
            "nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
            [GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
            "AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
            binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
            binding" evidence=ISO] [GO:0045727 "positive regulation of
            translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
            evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
            GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
            HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
            OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
            EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
            UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
            DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
            PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
            KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
            OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
            Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
        Length = 326

 Score = 107 (42.7 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A +I DK    S GYG+V + T ++A++A++ +NG  L  + I V   RPS     DA 
Sbjct:    48 SAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSEVIKDAN 107

Query:   101 L 101
             L
Sbjct:   108 L 108

 Score = 88 (36.0 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
             +I D   N+ KG+G+VT +  EEA  A+A +NG  L  +++ V
Sbjct:   275 VIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQV 317

 Score = 33 (16.7 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query:     4 DAFSQFGQVTEDLV 17
             D FS+FG++    V
Sbjct:   124 DMFSRFGRIINSRV 137


>RGD|1308649 [details] [associations]
            symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
            binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
            translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
            evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
            [GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
            [GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
            [GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
            "3'-UTR-mediated mRNA stabilization" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
            HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
            EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
            UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
            Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
            UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
            Uniprot:B5DF91
        Length = 326

 Score = 107 (42.7 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A +I DK    S GYG+V + T ++A++A++ +NG  L  + I V   RPS     DA 
Sbjct:    48 SAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSEVIKDAN 107

Query:   101 L 101
             L
Sbjct:   108 L 108

 Score = 88 (36.0 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
             +I D   N+ KG+G+VT +  EEA  A+A +NG  L  +++ V
Sbjct:   275 VIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQV 317

 Score = 33 (16.7 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query:     4 DAFSQFGQVTEDLV 17
             D FS+FG++    V
Sbjct:   124 DMFSRFGRIINSRV 137


>UNIPROTKB|Q3AF33 [details] [associations]
            symbol:CHY_0389 "RNA-binding protein" species:246194
            "Carboxydothermus hydrogenoformans Z-2901" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 EMBL:CP000141 GenomeReviews:CP000141_GR
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
            ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
            KEGG:chy:CHY_0389 PATRIC:21273941
            BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
        Length = 83

 Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 18/52 (34%), Positives = 33/52 (63%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 90
             +  A +I++K   RS+GYG++    +E+A+K +  +NGK ++GR + V   R
Sbjct:    29 VIGARVILEKSTGRSRGYGFIEVR-DEDAEKFMTGLNGKEVEGRQLVVSEAR 79


>TIGR_CMR|CHY_0389 [details] [associations]
            symbol:CHY_0389 "RNA-binding protein" species:246194
            "Carboxydothermus hydrogenoformans Z-2901" [GO:0003723 "RNA
            binding" evidence=ISS] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CP000141
            GenomeReviews:CP000141_GR Gene3D:3.30.70.330 GO:GO:0003676
            eggNOG:COG0724 HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
            ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
            KEGG:chy:CHY_0389 PATRIC:21273941
            BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
        Length = 83

 Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 18/52 (34%), Positives = 33/52 (63%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 90
             +  A +I++K   RS+GYG++    +E+A+K +  +NGK ++GR + V   R
Sbjct:    29 VIGARVILEKSTGRSRGYGFIEVR-DEDAEKFMTGLNGKEVEGRQLVVSEAR 79


>RGD|1305015 [details] [associations]
            symbol:Pabpc4 "poly(A) binding protein, cytoplasmic 4"
            species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0008143
            "poly(A) RNA binding" evidence=ISO] [GO:0008266 "poly(U) RNA
            binding" evidence=ISO] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
            [GO:0017130 "poly(C) RNA binding" evidence=ISO] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            RGD:1305015 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            eggNOG:COG0724 HOVERGEN:HBG002295 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 EMBL:BC088337 IPI:IPI00780433 UniGene:Rn.201330
            ProteinModelPortal:Q5I0G7 PRIDE:Q5I0G7 UCSC:RGD:1305015
            InParanoid:Q5I0G7 ArrayExpress:Q5I0G7 Genevestigator:Q5I0G7
            Uniprot:Q5I0G7
        Length = 415

 Score = 108 (43.1 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 24/67 (35%), Positives = 41/67 (61%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A ++++ G  RSKG+G+V FS+ EEA KA+ +MNG+++  + ++V      R+    A 
Sbjct:    77 SAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV--ALAQRKEERKAH 132

Query:   101 LARQSAQ 107
             L  Q  Q
Sbjct:   133 LTNQYMQ 139


>UNIPROTKB|J3QRF4 [details] [associations]
            symbol:RBFOX3 "RNA binding protein fox-1 homolog"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0043484 "regulation of RNA splicing"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
            Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484 InterPro:IPR025670
            Pfam:PF12414 EMBL:AC021534 EMBL:AC073624 HGNC:HGNC:27097
            OMA:LQASLCR EMBL:AC020689 EMBL:AC027824 EMBL:AC055858 EMBL:AC142247
            ProteinModelPortal:J3QRF4 Ensembl:ENST00000583458 Uniprot:J3QRF4
        Length = 358

 Score = 94 (38.1 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
 Identities = 17/36 (47%), Positives = 26/36 (72%)

Query:    53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 88
             SKG+G+VTF T  +A +A   +NG +++GR I V+N
Sbjct:   136 SKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNN 171

 Score = 32 (16.3 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
 Identities = 6/18 (33%), Positives = 10/18 (55%)

Query:     2 LADAFSQFGQVTEDLVYF 19
             L   F QFG++ +  + F
Sbjct:   114 LRQMFGQFGKILDVEIIF 131


>TAIR|locus:2150215 [details] [associations]
            symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
            [GO:0010048 "vernalization response" evidence=RCA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
            GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
            EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
            RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
            SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
            KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
            InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
            ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
        Length = 425

 Score = 108 (43.1 bits), Expect = 2.2e-05, P = 2.2e-05
 Identities = 26/84 (30%), Positives = 41/84 (48%)

Query:    10 GQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQK 69
             G +  D+  +    Q  F +HY     S +  A ++ D    RSKGYG+V F+ E E  +
Sbjct:   121 GDLAPDVTDYLL--QETFRVHY-----SSVRGAKVVTDPSTGRSKGYGFVKFAEESERNR 173

Query:    70 ALADMNGKLLDGRVIFVDNVRPSR 93
             A+A+MNG     R + +    P +
Sbjct:   174 AMAEMNGLYCSTRPMRISAATPKK 197


>MGI|MGI:106368 [details] [associations]
            symbol:Rbfox3 "RNA binding protein, fox-1 homolog (C.
            elegans) 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IDA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IDA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005622 "intracellular" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0043025 "neuronal cell
            body" evidence=IDA] [GO:0043484 "regulation of RNA splicing"
            evidence=IEA] [GO:0097458 "neuron part" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
            Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:106368 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
            GO:GO:0000166 GO:GO:0003677 GO:GO:0043025 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005622 EMBL:CH466558
            GO:GO:0043484 EMBL:AL591075 GO:GO:0000381 eggNOG:NOG258617
            GeneTree:ENSGT00390000013767 KO:K14946 HOVERGEN:HBG000044
            InterPro:IPR025670 Pfam:PF12414 HSSP:Q9NWB1 CTD:146713
            EMBL:FJ958310 EMBL:FJ958311 EMBL:AK079086 EMBL:AK160816
            EMBL:AL591514 EMBL:AL591544 EMBL:BC054403 IPI:IPI00222115
            IPI:IPI00408241 IPI:IPI00648836 IPI:IPI00720112 IPI:IPI00894965
            RefSeq:NP_001020102.2 RefSeq:NP_001034256.1 RefSeq:NP_001034257.1
            UniGene:Mm.341103 ProteinModelPortal:Q8BIF2 SMR:Q8BIF2
            IntAct:Q8BIF2 STRING:Q8BIF2 PaxDb:Q8BIF2 PRIDE:Q8BIF2
            Ensembl:ENSMUST00000017576 Ensembl:ENSMUST00000069343
            Ensembl:ENSMUST00000103023 Ensembl:ENSMUST00000106278
            Ensembl:ENSMUST00000117731 Ensembl:ENSMUST00000120061 GeneID:52897
            KEGG:mmu:52897 UCSC:uc007mpo.1 InParanoid:Q8BIF2 OMA:LQASLCR
            NextBio:309687 Bgee:Q8BIF2 Genevestigator:Q8BIF2 Uniprot:Q8BIF2
        Length = 374

 Score = 94 (38.1 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
 Identities = 17/36 (47%), Positives = 26/36 (72%)

Query:    53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 88
             SKG+G+VTF T  +A +A   +NG +++GR I V+N
Sbjct:   137 SKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNN 172

 Score = 32 (16.3 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
 Identities = 6/18 (33%), Positives = 10/18 (55%)

Query:     2 LADAFSQFGQVTEDLVYF 19
             L   F QFG++ +  + F
Sbjct:   115 LRQMFGQFGKILDVEIIF 132


>RGD|1560070 [details] [associations]
            symbol:Rbfox3 "RNA binding protein, fox-1 homolog (C. elegans)
            3" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IEA;ISO] [GO:0003677 "DNA
            binding" evidence=IEA;ISO] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005622 "intracellular" evidence=ISO] [GO:0005634 "nucleus"
            evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0043025 "neuronal cell body"
            evidence=IEA;ISO] [GO:0097458 "neuron part" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
            Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
            RGD:1560070 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
            GO:GO:0003677 GO:GO:0043025 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 EMBL:CH473948 GO:GO:0000381
            GeneTree:ENSGT00390000013767 KO:K14946 InterPro:IPR025670
            Pfam:PF12414 OrthoDB:EOG4NVZKS CTD:146713 OMA:LQASLCR
            IPI:IPI00370377 RefSeq:NP_001127970.1 UniGene:Rn.143966
            Ensembl:ENSRNOT00000004524 GeneID:287847 KEGG:rno:287847
            NextBio:627138 Uniprot:D4A2H6
        Length = 375

 Score = 94 (38.1 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
 Identities = 17/36 (47%), Positives = 26/36 (72%)

Query:    53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 88
             SKG+G+VTF T  +A +A   +NG +++GR I V+N
Sbjct:   137 SKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNN 172

 Score = 32 (16.3 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
 Identities = 6/18 (33%), Positives = 10/18 (55%)

Query:     2 LADAFSQFGQVTEDLVYF 19
             L   F QFG++ +  + F
Sbjct:   115 LRQMFGQFGKILDVEIIF 132


>DICTYBASE|DDB_G0291386 [details] [associations]
            symbol:DDB_G0291386 "RNA recognition motif RNP-1
            domain-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            dictyBase:DDB_G0291386 EMBL:AAFI02000177 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 RefSeq:XP_635179.1
            ProteinModelPortal:Q54ER1 EnsemblProtists:DDB0304622 GeneID:8628125
            KEGG:ddi:DDB_G0291386 InParanoid:Q54ER1 Uniprot:Q54ER1
        Length = 463

 Score = 108 (43.1 bits), Expect = 2.5e-05, P = 2.5e-05
 Identities = 24/58 (41%), Positives = 38/58 (65%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS-RRYNT 97
             +A +IMD     S+GYG+V F+++ E  KAL DMNG  ++ + I V+N  P+ +R N+
Sbjct:   142 SARVIMDSATGISRGYGFVKFASDVEKDKALIDMNGFYINNKPIKVNN--PTHKRLNS 197


>ASPGD|ASPL0000010999 [details] [associations]
            symbol:fabM species:162425 "Emericella nidulans"
            [GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
            "biological_process" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
            GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
            GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
            EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
            STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
            GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
            Uniprot:Q5B630
        Length = 732

 Score = 100 (40.3 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
 Identities = 29/105 (27%), Positives = 55/105 (52%)

Query:     4 DAFSQFGQVTEDLVYFYFKS-QPLFPLHYFL-ISDSF--LFAATIIMDKGKNRSKGYGYV 59
             D  S+F ++  +    Y K+  P      F  + + F  + +AT+  D  + +S+G+G+V
Sbjct:   210 DRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDS-EGKSRGFGFV 268

Query:    60 TFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
              FST E AQ A+ +MN K +  + ++V   R  +++  +  L +Q
Sbjct:   269 NFSTHESAQAAVEEMNDKEVRSQKLYVG--RAQKKHEREEELRKQ 311

 Score = 96 (38.9 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
 Identities = 16/39 (41%), Positives = 30/39 (76%)

Query:    48 KGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
             K   +SKG+G+V FS+ +EA KA+ +MN ++++G+ ++V
Sbjct:   411 KPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYV 449

 Score = 85 (35.0 bits), Expect = 0.00093, Sum P(2) = 0.00093
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query:    53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
             SKGYG+V + T E A  A+  +NG LL+ + +FV
Sbjct:   169 SKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV 202

 Score = 33 (16.7 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
 Identities = 7/12 (58%), Positives = 8/12 (66%)

Query:     1 MLADAFSQFGQV 12
             ML + FS  GQV
Sbjct:    57 MLYELFSSIGQV 68


>TAIR|locus:2062379 [details] [associations]
            symbol:AT2G35410 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
            [GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
            "chloroplast relocation" evidence=RCA] [GO:0010027 "thylakoid
            membrane organization" evidence=RCA] [GO:0015979 "photosynthesis"
            evidence=RCA] [GO:0015995 "chlorophyll biosynthetic process"
            evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
            process, mevalonate-independent pathway" evidence=RCA] [GO:0034660
            "ncRNA metabolic process" evidence=RCA] [GO:0042793 "transcription
            from plastid promoter" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009579 EMBL:AC005314
            UniGene:At.48551 eggNOG:COG0724 HSSP:P11940 EMBL:AY042799
            EMBL:BT000365 IPI:IPI00522747 PIR:C84768 RefSeq:NP_181084.1
            ProteinModelPortal:O82299 SMR:O82299 STRING:O82299 PaxDb:O82299
            PRIDE:O82299 EnsemblPlants:AT2G35410.1 GeneID:818107
            KEGG:ath:AT2G35410 TAIR:At2g35410 HOGENOM:HOG000240991
            InParanoid:O82299 OMA:VSNLAWK PhylomeDB:O82299
            ProtClustDB:CLSN2720628 ArrayExpress:O82299 Genevestigator:O82299
            Uniprot:O82299
        Length = 308

 Score = 105 (42.0 bits), Expect = 2.7e-05, P = 2.7e-05
 Identities = 21/53 (39%), Positives = 33/53 (62%)

Query:    32 FLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVI 84
             F  +D    +A ++    + RS GYG+V+F+T EEA+ A+  +NGK + GR I
Sbjct:   214 FTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPI 266


>UNIPROTKB|Q8N7X1 [details] [associations]
            symbol:RBMXL3 "RNA-binding motif protein, X-linked-like-3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AL589786 EMBL:AK301904 EMBL:AK097568 IPI:IPI00167369
            RefSeq:NP_001138818.1 UniGene:Hs.376008 ProteinModelPortal:Q8N7X1
            SMR:Q8N7X1 PhosphoSite:Q8N7X1 PaxDb:Q8N7X1 PRIDE:Q8N7X1
            Ensembl:ENST00000424776 GeneID:139804 KEGG:hsa:139804
            UCSC:uc011mte.1 CTD:139804 GeneCards:GC0XP114423 HGNC:HGNC:26859
            neXtProt:NX_Q8N7X1 PharmGKB:PA164725338 eggNOG:NOG331461
            HOGENOM:HOG000112105 InParanoid:Q8N7X1 OMA:YEEYRGR
            OrthoDB:EOG4ZPDV2 GenomeRNAi:139804 NextBio:84044 Bgee:Q8N7X1
            CleanEx:HS_CXorf55 Genevestigator:Q8N7X1 Uniprot:Q8N7X1
        Length = 1067

 Score = 112 (44.5 bits), Expect = 2.7e-05, P = 2.7e-05
 Identities = 20/50 (40%), Positives = 34/50 (68%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV-DNVRPS 92
             ++ D+  N+S+G+ +VTF +  +A+ A  DMNGK LDG+ I V   ++P+
Sbjct:    39 LMKDRKTNKSRGFAFVTFESPADAKAAARDMNGKYLDGKAIMVAQTIKPA 88


>UNIPROTKB|Q32P59 [details] [associations]
            symbol:SLIRP "SRA stem-loop-interacting RNA-binding
            protein, mitochondrial" species:9913 "Bos taurus" [GO:0005739
            "mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005739 GO:GO:0005634 GO:GO:0006355 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 HOGENOM:HOG000276232
            EMBL:BC108247 IPI:IPI00713880 RefSeq:NP_001032562.1
            UniGene:Bt.56679 ProteinModelPortal:Q32P59 STRING:Q32P59
            Ensembl:ENSBTAT00000043035 GeneID:613614 KEGG:bta:613614 CTD:81892
            eggNOG:NOG291073 GeneTree:ENSGT00390000008624 HOVERGEN:HBG079935
            InParanoid:Q32P59 OMA:SNELREH OrthoDB:EOG4Z62Q4 NextBio:20898668
            Uniprot:Q32P59
        Length = 111

 Score = 77 (32.2 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
 Identities = 19/49 (38%), Positives = 26/49 (53%)

Query:    43 TIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
             T+  DK     KG G++ FS+EEE   AL   N  ++DG  + V   RP
Sbjct:    49 TVPFDKETGFHKGMGWIHFSSEEELHNALQQEN-HVIDGVKLHVQPQRP 96

 Score = 34 (17.0 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query:     2 LADAFSQFGQVTEDLVYF 19
             L + F+QFG V +  V F
Sbjct:    35 LREHFAQFGHVRKCTVPF 52


>TAIR|locus:2015403 [details] [associations]
            symbol:RBP47C "RNA-binding protein 47C" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
            eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
            UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
            EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
            IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
            ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
            EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
            TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
            Genevestigator:Q9SX79 Uniprot:Q9SX79
        Length = 432

 Score = 107 (42.7 bits), Expect = 2.9e-05, P = 2.9e-05
 Identities = 22/56 (39%), Positives = 31/56 (55%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 96
             AA +++D    RSKGYG+V F  E E  KA+ +MNG     R + +    P R+ N
Sbjct:   226 AAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATP-RKTN 280


>TAIR|locus:2015398 [details] [associations]
            symbol:RBP47C' "RNA-binding protein 47C'" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
            "poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
            EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
            EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
            RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
            ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
            EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
            TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
            ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
        Length = 434

 Score = 107 (42.7 bits), Expect = 2.9e-05, P = 2.9e-05
 Identities = 22/56 (39%), Positives = 31/56 (55%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 96
             AA +++D    RSKGYG+V F  E E  KA+ +MNG     R + +    P R+ N
Sbjct:   228 AAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATP-RKTN 282


>TAIR|locus:2094098 [details] [associations]
            symbol:RBP47B "RNA-binding protein 47B" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
            factor import into nucleus" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
            GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
            GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
            EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
            UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
            PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
            KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
            PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
            Uniprot:Q0WW84
        Length = 435

 Score = 107 (42.7 bits), Expect = 2.9e-05, P = 2.9e-05
 Identities = 21/53 (39%), Positives = 29/53 (54%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
             +A +++D    RSKGYG+V F  E E  +AL +MNG     R + V    P R
Sbjct:   231 SAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKR 283


>UNIPROTKB|G3V5Z6 [details] [associations]
            symbol:RBM23 "Probable RNA-binding protein 23" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
            EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
            ProteinModelPortal:G3V5Z6 SMR:G3V5Z6 Ensembl:ENST00000555209
            ArrayExpress:G3V5Z6 Bgee:G3V5Z6 Uniprot:G3V5Z6
        Length = 189

 Score = 100 (40.3 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 23/55 (41%), Positives = 32/55 (58%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             ++ D    RSKGYG++TFS  E A++AL  +NG  L GR + V +V       TD
Sbjct:    44 LMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTD 98


>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
            symbol:rbm39a "RNA binding motif protein 39a"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
            HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
            KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
            GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
            IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
            Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
            KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
        Length = 523

 Score = 108 (43.1 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 29/67 (43%), Positives = 39/67 (58%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLAR 103
             ++MD    RSKGYG++TFS  E A+KAL  +NG  L GR + V +V  + R  TDA  A 
Sbjct:   277 LMMDSETGRSKGYGFITFSDAECAKKALEQLNGFELAGRPMKVGHV--TER--TDASTAS 332

Query:   104 QSAQSPE 110
                 + E
Sbjct:   333 SFLDNDE 339


>RGD|1306751 [details] [associations]
            symbol:Rbmxrtl "RNA binding motif protein, X chromosome
            retrogene-like" species:10116 "Rattus norvegicus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=IDA]
            [GO:0001047 "core promoter binding" evidence=ISO] [GO:0003682
            "chromatin binding" evidence=ISO] [GO:0003723 "RNA binding"
            evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=ISO;ISS] [GO:0005719 "nuclear euchromatin" evidence=ISS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0006376 "mRNA splice site selection"
            evidence=IDA] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=ISS] [GO:0007275 "multicellular organismal development"
            evidence=IEA] [GO:0044530 "supraspliceosomal complex" evidence=IDA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISO;ISS] [GO:0048025 "negative
            regulation of mRNA splicing, via spliceosome" evidence=IDA]
            [GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
            evidence=IDA] [GO:0051260 "protein homooligomerization"
            evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
            evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISS] [GO:0071347 "cellular response to interleukin-1"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1306751 GO:GO:0007275
            GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006366 GO:GO:0006509
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
            eggNOG:COG0724 GO:GO:0048026 GO:GO:0006376 GO:GO:0000381
            GO:GO:0044530 GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
            OMA:ILLMKDR OrthoDB:EOG4001KF UniGene:Rn.19966 EMBL:AABR03113401
            IPI:IPI00559910 RefSeq:NP_001100890.1 ProteinModelPortal:P84586
            SMR:P84586 STRING:P84586 PhosphoSite:P84586 PRIDE:P84586
            Ensembl:ENSRNOT00000016184 GeneID:307779 KEGG:rno:307779
            UCSC:RGD:1306751 CTD:307779 InParanoid:P84586 NextBio:657858
            Genevestigator:P84586 GermOnline:ENSRNOG00000012138 Uniprot:P84586
        Length = 388

 Score = 106 (42.4 bits), Expect = 3.2e-05, P = 3.2e-05
 Identities = 20/50 (40%), Positives = 33/50 (66%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV-RPS 92
             ++ D+  N+S+G+ +VTF +  +A+    DMNGK LDG+ I V+   +PS
Sbjct:    39 LMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKVEQATKPS 88


>RGD|1585845 [details] [associations]
            symbol:Rbmxl1 "RNA binding motif protein, X-linked-like 1"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1585845 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529
            GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
            OrthoDB:EOG4CNQSK EMBL:AC136101 IPI:IPI00763272 UniGene:Rn.19966
            Ensembl:ENSRNOT00000041672 UCSC:RGD:1585845 Uniprot:D4AE41
        Length = 388

 Score = 106 (42.4 bits), Expect = 3.2e-05, P = 3.2e-05
 Identities = 20/50 (40%), Positives = 33/50 (66%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV-RPS 92
             ++ D+  N+S+G+ +VTF +  +A+    DMNGK LDG+ I V+   +PS
Sbjct:    39 LMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKVEQATKPS 88


>POMBASE|SPBC4F6.14 [details] [associations]
            symbol:SPBC4F6.14 "RNA-binding protein (predicted)"
            species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=ISS;IDA] [GO:0006364
            "rRNA processing" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            PomBase:SPBC4F6.14 GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724
            HSSP:P52298 HOGENOM:HOG000187841 KO:K14573 OrthoDB:EOG4K6KCP
            PIR:T40511 RefSeq:NP_596114.1 ProteinModelPortal:O74400
            STRING:O74400 EnsemblFungi:SPBC4F6.14.1 GeneID:2540871
            KEGG:spo:SPBC4F6.14 OMA:MHALECL NextBio:20801987 Uniprot:O74400
        Length = 674

 Score = 109 (43.4 bits), Expect = 3.3e-05, P = 3.3e-05
 Identities = 20/57 (35%), Positives = 34/57 (59%)

Query:    42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             A ++ +     ++GYG+VTFS  E+AQ+A  ++  K L GR++ +D   P +R   D
Sbjct:    34 AVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFATPRKRSEVD 90


>TAIR|locus:2058573 [details] [associations]
            symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
            "translation initiation factor activity" evidence=ISS] [GO:0046686
            "response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
            GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
            KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
            EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
            UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
            STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
            EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
            TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
            ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
        Length = 662

 Score = 97 (39.2 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
 Identities = 17/35 (48%), Positives = 27/35 (77%)

Query:    52 RSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
             +S+GYG+V F TE+ A+ A+  +NGK+L+ + IFV
Sbjct:   172 QSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFV 206

 Score = 93 (37.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
 Identities = 22/63 (34%), Positives = 33/63 (52%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +M      SKG G+V FS   EA + L +MNGK++ G+ ++V      R+    A L  Q
Sbjct:   359 VMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYV--ALAQRKEERRAKLQAQ 416

Query:   105 SAQ 107
              +Q
Sbjct:   417 FSQ 419

 Score = 89 (36.4 bits), Expect = 0.00023, Sum P(2) = 0.00023
 Identities = 16/41 (39%), Positives = 26/41 (63%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVI 84
             +  D   N S GYGYV +S  ++A+KA+  +N   L+G++I
Sbjct:    77 VCRDAATNTSLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMI 117

 Score = 34 (17.0 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query:    90 RPSRRYNTDAPLARQSAQ 107
             RP  R + D P+  Q  Q
Sbjct:   490 RPGGRRSGDGPMRHQHQQ 507

 Score = 32 (16.3 bits), Expect = 0.00014, Sum P(2) = 0.00014
 Identities = 5/12 (41%), Positives = 9/12 (75%)

Query:     2 LADAFSQFGQVT 13
             L + F++FG +T
Sbjct:   344 LRELFAEFGTIT 355


>UNIPROTKB|F1N700 [details] [associations]
            symbol:RBFOX3 "RNA binding protein fox-1 homolog"
            species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
            [GO:0043025 "neuronal cell body" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
            GO:GO:0000166 GO:GO:0003677 GO:GO:0043025 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000381
            GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
            OMA:LQASLCR EMBL:DAAA02049469 EMBL:DAAA02049462 EMBL:DAAA02049463
            EMBL:DAAA02049464 EMBL:DAAA02049465 EMBL:DAAA02049466
            EMBL:DAAA02049467 EMBL:DAAA02049468 IPI:IPI00708068
            Ensembl:ENSBTAT00000008240 Uniprot:F1N700
        Length = 432

 Score = 94 (38.1 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
 Identities = 17/36 (47%), Positives = 26/36 (72%)

Query:    53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 88
             SKG+G+VTF T  +A +A   +NG +++GR I V+N
Sbjct:   208 SKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNN 243

 Score = 32 (16.3 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
 Identities = 6/18 (33%), Positives = 10/18 (55%)

Query:     2 LADAFSQFGQVTEDLVYF 19
             L   F QFG++ +  + F
Sbjct:   186 LRQMFGQFGKILDVEIIF 203


>UNIPROTKB|G4MVB4 [details] [associations]
            symbol:MGG_01746 "Uncharacterized protein" species:242507
            "Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
            evidence=ND] [GO:0043581 "mycelium development" evidence=IEP]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0043581 EMBL:CM001232 RefSeq:XP_003714743.1
            ProteinModelPortal:G4MVB4 EnsemblFungi:MGG_01746T0 GeneID:2679184
            KEGG:mgr:MGG_01746 Uniprot:G4MVB4
        Length = 379

 Score = 105 (42.0 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query:    52 RSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQSAQSPEE 111
             + +G+G+VT ++EE  QKA+ +MNGK +D R I V  V       TD  +A++   S E 
Sbjct:   286 KGRGFGFVTLASEELQQKAVTEMNGKQIDSREIAV-KVAIDSPDKTDDDVAQEGEASTEA 344

Query:   112 N 112
             N
Sbjct:   345 N 345


>UNIPROTKB|F1N9I5 [details] [associations]
            symbol:ELAVL1 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
            [GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
            "positive regulation of translation" evidence=IEA] [GO:0070935
            "3'-UTR-mediated mRNA stabilization" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
            TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
            EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
            Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
        Length = 326

 Score = 104 (41.7 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A +I DK    S GYG+V + T ++A++A+  +NG  L  + I V   RPS     DA 
Sbjct:    48 SAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDAN 107

Query:   101 L 101
             L
Sbjct:   108 L 108

 Score = 88 (36.0 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
             +I D   N+ KG+G+VT +  EEA  A+A +NG  L  +++ V
Sbjct:   275 VIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQV 317

 Score = 33 (16.7 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query:     4 DAFSQFGQVTEDLV 17
             D FS+FG++    V
Sbjct:   124 DMFSRFGRIINSRV 137


>UNIPROTKB|Q3ZCE2 [details] [associations]
            symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
            Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
            [GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
            [GO:0045727 "positive regulation of translation" evidence=IEA]
            [GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
            "AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
            HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
            OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
            OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
            IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
            STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
            KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
        Length = 326

 Score = 104 (41.7 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A +I DK    S GYG+V + T ++A++A+  +NG  L  + I V   RPS     DA 
Sbjct:    48 SAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDAN 107

Query:   101 L 101
             L
Sbjct:   108 L 108

 Score = 88 (36.0 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
             +I D   N+ KG+G+VT +  EEA  A+A +NG  L  +++ V
Sbjct:   275 VIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQV 317

 Score = 33 (16.7 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query:     4 DAFSQFGQVTEDLV 17
             D FS+FG++    V
Sbjct:   124 DMFSRFGRIINSRV 137


>UNIPROTKB|Q15717 [details] [associations]
            symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
            "3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
            "mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
            "AU-rich element binding" evidence=IDA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
            [GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
            "mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
            "positive regulation of translation" evidence=IDA] [GO:0003729
            "mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
            development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
            [GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
            evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
            [GO:0016071 "mRNA metabolic process" evidence=TAS]
            Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
            GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
            GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
            EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
            UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
            PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
            SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
            PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
            PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
            KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
            HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
            PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
            OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
            ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
            NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
            Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
            Uniprot:Q15717
        Length = 326

 Score = 104 (41.7 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A +I DK    S GYG+V + T ++A++A+  +NG  L  + I V   RPS     DA 
Sbjct:    48 SAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDAN 107

Query:   101 L 101
             L
Sbjct:   108 L 108

 Score = 88 (36.0 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
             +I D   N+ KG+G+VT +  EEA  A+A +NG  L  +++ V
Sbjct:   275 VIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQV 317

 Score = 33 (16.7 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query:     4 DAFSQFGQVTEDLV 17
             D FS+FG++    V
Sbjct:   124 DMFSRFGRIINSRV 137


>UNIPROTKB|D3K5N7 [details] [associations]
            symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
            Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
            "3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
            "positive regulation of translation" evidence=IEA] [GO:0019901
            "protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
            GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
            TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
            EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
            ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
            GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
        Length = 326

 Score = 104 (41.7 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A +I DK    S GYG+V + T ++A++A+  +NG  L  + I V   RPS     DA 
Sbjct:    48 SAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDAN 107

Query:   101 L 101
             L
Sbjct:   108 L 108


>UNIPROTKB|F1PSC4 [details] [associations]
            symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
            Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
        Length = 334

 Score = 104 (41.7 bits), Expect = 4.1e-05, P = 4.1e-05
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A +I DK    S GYG+V + T ++A++A+  +NG  L  + I V   RPS     DA 
Sbjct:    56 SAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDAN 115

Query:   101 L 101
             L
Sbjct:   116 L 116

 Score = 88 (36.0 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
             +I D   N+ KG+G+VT +  EEA  A+A +NG  L  +++ V
Sbjct:   283 VIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQV 325

 Score = 33 (16.7 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query:     4 DAFSQFGQVTEDLV 17
             D FS+FG++    V
Sbjct:   132 DMFSRFGRIINSRV 145


>UNIPROTKB|O75526 [details] [associations]
            symbol:RBMXL2 "RNA-binding motif protein, X-linked-like-2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0030529 CTD:27288 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 OMA:GDFDLRP OrthoDB:EOG4WSWBK InterPro:IPR012604
            Pfam:PF08081 eggNOG:NOG140744 HSSP:Q14011 EMBL:AF069682
            EMBL:AC100875 EMBL:BC057796 EMBL:AF279289 IPI:IPI00004450
            RefSeq:NP_055284.3 UniGene:Hs.121605 ProteinModelPortal:O75526
            SMR:O75526 IntAct:O75526 STRING:O75526 PhosphoSite:O75526
            PaxDb:O75526 PRIDE:O75526 Ensembl:ENST00000306904 GeneID:27288
            KEGG:hsa:27288 UCSC:uc001mfc.2 GeneCards:GC11P007068
            H-InvDB:HIX0035856 H-InvDB:HIX0171337 HGNC:HGNC:17886 HPA:HPA038912
            HPA:HPA051842 MIM:605444 neXtProt:NX_O75526 PharmGKB:PA162400840
            InParanoid:O75526 PhylomeDB:O75526 GenomeRNAi:27288 NextBio:50232
            Bgee:O75526 CleanEx:HS_RBMXL2 Genevestigator:O75526 Uniprot:O75526
        Length = 392

 Score = 105 (42.0 bits), Expect = 4.1e-05, P = 4.1e-05
 Identities = 23/67 (34%), Positives = 38/67 (56%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV-RPSRRYNTDAPLA 102
             ++ D+  N+S+G+ +VTF +  +A+ A  DMNGK LDG+ I V    +P+   +   P  
Sbjct:    39 LMKDRETNKSRGFAFVTFESPADAKAAARDMNGKSLDGKAIKVAQATKPAFESSRRGPPP 98

Query:   103 RQSAQSP 109
              +S   P
Sbjct:    99 PRSRGRP 105


>TAIR|locus:2199700 [details] [associations]
            symbol:PAB3 "poly(A) binding protein 3" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
            "translation initiation factor activity" evidence=ISS] [GO:0006397
            "mRNA processing" evidence=IGI] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
            EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
            RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
            SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
            GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
            OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
            Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
        Length = 660

 Score = 105 (42.0 bits), Expect = 8.5e-05, P = 8.5e-05
 Identities = 24/67 (35%), Positives = 37/67 (55%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV--RPSRRYN 96
             + +  + MD    RSKGYG+V F  EE AQ A+  +NG L++ + +FV +   R  R  +
Sbjct:   162 ILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARD 220

Query:    97 TDAPLAR 103
              + P  R
Sbjct:   221 ENTPTPR 227

 Score = 94 (38.1 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
 Identities = 20/67 (29%), Positives = 39/67 (58%)

Query:    45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV--RPSRRYNTDAPLA 102
             +M   +  S+G+G+V +S  EEA +AL++MNGK++  + +++     +  RR +  A  +
Sbjct:   363 VMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFS 422

Query:   103 RQSAQSP 109
             +  A  P
Sbjct:   423 QIRAPGP 429

 Score = 36 (17.7 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query:     2 LADAFSQFGQVTEDLV 17
             L + FS++G VT   V
Sbjct:   348 LKEMFSEYGNVTSSKV 363


>UNIPROTKB|H0YJJ3 [details] [associations]
            symbol:RBM23 "Probable RNA-binding protein 23" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
            EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23 Ensembl:ENST00000553884
            Uniprot:H0YJJ3
        Length = 214

 Score = 100 (40.3 bits), Expect = 4.4e-05, P = 4.4e-05
 Identities = 23/55 (41%), Positives = 32/55 (58%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             ++ D    RSKGYG++TFS  E A++AL  +NG  L GR + V +V       TD
Sbjct:    69 LMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTD 123


>UNIPROTKB|B4DVB8 [details] [associations]
            symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
            UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
            IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
            STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
            ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
        Length = 353

 Score = 104 (41.7 bits), Expect = 4.5e-05, P = 4.5e-05
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             +A +I DK    S GYG+V + T ++A++A+  +NG  L  + I V   RPS     DA 
Sbjct:    75 SAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDAN 134

Query:   101 L 101
             L
Sbjct:   135 L 135

 Score = 88 (36.0 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
             +I D   N+ KG+G+VT +  EEA  A+A +NG  L  +++ V
Sbjct:   302 VIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQV 344

 Score = 33 (16.7 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query:     4 DAFSQFGQVTEDLV 17
             D FS+FG++    V
Sbjct:   151 DMFSRFGRIINSRV 164


>UNIPROTKB|Q6IRQ4 [details] [associations]
            symbol:rbmx "RNA-binding motif protein, X chromosome"
            species:8355 "Xenopus laevis" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
            GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
            GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
            GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
            GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314
            InterPro:IPR012604 Pfam:PF08081 CTD:27316 KO:K12885 EMBL:BC070649
            RefSeq:NP_001084981.1 UniGene:Xl.25221 HSSP:P08579
            ProteinModelPortal:Q6IRQ4 SMR:Q6IRQ4 GeneID:432041 KEGG:xla:432041
            Xenbase:XB-GENE-6078824 Uniprot:Q6IRQ4
        Length = 370

 Score = 104 (41.7 bits), Expect = 4.8e-05, P = 4.8e-05
 Identities = 23/66 (34%), Positives = 39/66 (59%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR------PSRRYNT 97
             ++ D+  N+S+G+ +VTF +  +A+ A  ++NGK LDG+ I V+         PSRR   
Sbjct:    39 LMKDRETNKSRGFAFVTFESPADAKDAARELNGKALDGKPIKVEQATKPSFSTPSRRGPP 98

Query:    98 DAPLAR 103
              +P +R
Sbjct:    99 TSPRSR 104


>TAIR|locus:2012211 [details] [associations]
            symbol:RBP47A "RNA-binding protein 47A" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
            EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
            IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
            UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
            PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
            KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
        Length = 445

 Score = 105 (42.0 bits), Expect = 5.0e-05, P = 5.0e-05
 Identities = 20/52 (38%), Positives = 28/52 (53%)

Query:    42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
             A +++D    RSKGYG+V F  E E  +A+ +MNG     R + V    P R
Sbjct:   243 AKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKR 294


>TAIR|locus:2011726 [details] [associations]
            symbol:AT1G76460 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0048573 "photoperiodism,
            flowering" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 UniGene:At.43912
            UniGene:At.70089 IPI:IPI00542968 RefSeq:NP_565132.2
            UniGene:At.69045 ProteinModelPortal:F4I2E4 SMR:F4I2E4 PRIDE:F4I2E4
            EnsemblPlants:AT1G76460.1 GeneID:843979 KEGG:ath:AT1G76460
            OMA:YGPEYMY Uniprot:F4I2E4
        Length = 285

 Score = 102 (41.0 bits), Expect = 5.0e-05, P = 5.0e-05
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGR 82
             +  A +I DK   RSKGYG+VTF   E A++A AD    ++DGR
Sbjct:    50 ILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADPT-PIIDGR 92


>RGD|2322083 [details] [associations]
            symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
            CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
            UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
            KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
        Length = 382

 Score = 104 (41.7 bits), Expect = 5.1e-05, P = 5.1e-05
 Identities = 23/61 (37%), Positives = 38/61 (62%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLAR 103
             +I D    +SKG+G+V + T E AQKA+ +++GK +DG+V+ V   R  ++    A L R
Sbjct:   230 VIRD-ATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVG--RAQKKIERLAELRR 286

Query:   104 Q 104
             +
Sbjct:   287 R 287


>TAIR|locus:2075676 [details] [associations]
            symbol:AT3G47120 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0008270 "zinc ion
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00642 PROSITE:PS50102
            PROSITE:PS50103 SMART:SM00356 SMART:SM00360 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
            GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL133292
            EMBL:BT002472 EMBL:BT010369 IPI:IPI00540994 PIR:T45648
            RefSeq:NP_190296.1 UniGene:At.35841 HSSP:Q9V535
            ProteinModelPortal:Q9SD61 SMR:Q9SD61 IntAct:Q9SD61 PaxDb:Q9SD61
            PRIDE:Q9SD61 EnsemblPlants:AT3G47120.1 GeneID:823865
            KEGG:ath:AT3G47120 TAIR:At3g47120 eggNOG:COG0724
            HOGENOM:HOG000174091 InParanoid:Q9SD61 KO:K13107 OMA:GHEEDRS
            PhylomeDB:Q9SD61 ProtClustDB:CLSN2915690 Genevestigator:Q9SD61
            Uniprot:Q9SD61
        Length = 352

 Score = 90 (36.7 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
 Identities = 19/66 (28%), Positives = 37/66 (56%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNT-DAPLA 102
             +I DKG  +SKG+ ++ +  +     A+ ++NG L+ GR I VD+    +++   D    
Sbjct:    67 LIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKVDHCGAYKKHEEEDEETR 126

Query:   103 RQSAQS 108
             RQ+ ++
Sbjct:   127 RQNREA 132

 Score = 32 (16.3 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
 Identities = 5/13 (38%), Positives = 9/13 (69%)

Query:     2 LADAFSQFGQVTE 14
             L   FSQ+G++ +
Sbjct:    52 LLAVFSQYGEIVD 64


>WB|WBGene00004315 [details] [associations]
            symbol:rbd-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
            "positive regulation of growth rate" evidence=IMP] [GO:0040007
            "growth" evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0018996
            "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP]
            [GO:0008406 "gonad development" evidence=IMP] [GO:0040035
            "hermaphrodite genitalia development" evidence=IMP] [GO:0006396
            "RNA processing" evidence=IMP] [GO:0040039 "inductive cell
            migration" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
            [GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
            evidence=IMP] [GO:0040025 "vulval development" evidence=IMP]
            [GO:0040002 "collagen and cuticulin-based cuticle development"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0040007 GO:GO:0040010
            GO:GO:0005730 GO:GO:0008406 GO:GO:0000166 GO:GO:0018996
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040035 GO:GO:0040039
            HSSP:P19339 GO:GO:0040002 GO:GO:0040025 eggNOG:COG0724 KO:K14787
            HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
            GO:GO:0000478 EMBL:Z83127 PIR:T25186 RefSeq:NP_502432.1
            ProteinModelPortal:Q9XU67 SMR:Q9XU67 DIP:DIP-26131N
            MINT:MINT-1105789 STRING:Q9XU67 PaxDb:Q9XU67
            EnsemblMetazoa:T23F6.4.1 EnsemblMetazoa:T23F6.4.2 GeneID:178229
            KEGG:cel:CELE_T23F6.4 UCSC:T23F6.4.1 CTD:178229 WormBase:T23F6.4
            InParanoid:Q9XU67 NextBio:900268 Uniprot:Q9XU67
        Length = 872

 Score = 93 (37.8 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
 Identities = 24/63 (38%), Positives = 35/63 (55%)

Query:    50 KNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD-APLARQSAQS 108
             K  S G+G+V F T  +A+ AL DM G+LLDG  +    ++ S R N D   L R+  + 
Sbjct:   685 KPLSMGFGFVQFYTAFDAKTALKDMQGELLDGHSL---ELKISHRENADKGALKRKEVKQ 741

Query:   109 PEE 111
              E+
Sbjct:   742 KEQ 744

 Score = 38 (18.4 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query:    16 LVYFYFKSQPLF 27
             L Y  F+SQPL+
Sbjct:   539 LAYSRFRSQPLY 550


>TAIR|locus:2122009 [details] [associations]
            symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
            immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
            evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
            [GO:0009073 "aromatic amino acid family biosynthetic process"
            evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
            [GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
            [GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
            "protein targeting to chloroplast" evidence=RCA] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=RCA]
            [GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
            conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
            stabilization" evidence=IMP] [GO:0006396 "RNA processing"
            evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
            GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
            EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
            EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
            IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
            PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
            ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
            PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
            KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
            OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
            Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
            Uniprot:Q04836
        Length = 329

 Score = 102 (41.0 bits), Expect = 6.5e-05, P = 6.5e-05
 Identities = 21/55 (38%), Positives = 36/55 (65%)

Query:    42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSRR 94
             A ++ D+   RS+G+G+VT S  +E  +A++ ++G+ L+GR I V+    RP RR
Sbjct:   273 ARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPRR 327


>ZFIN|ZDB-GENE-040923-2 [details] [associations]
            symbol:rbfox1l "RNA binding protein, fox-1 homolog
            (C. elegans) 1-like" species:7955 "Danio rerio" [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA;IGI;IDA] [GO:0043484 "regulation of RNA splicing"
            evidence=IEA;IGI;IDA;IMP] [GO:0048739 "cardiac muscle fiber
            development" evidence=IGI] [GO:0048741 "skeletal muscle fiber
            development" evidence=IGI] [GO:0008380 "RNA splicing"
            evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
            [GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
            PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-040923-2 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0048741
            GO:GO:0043484 GO:GO:0048739 eggNOG:NOG258617
            GeneTree:ENSGT00390000013767 KO:K14946 HOVERGEN:HBG000044
            InterPro:IPR025670 Pfam:PF12414 HSSP:Q9NWB1 EMBL:AB074763
            EMBL:BX511250 IPI:IPI00505620 RefSeq:NP_999940.1 UniGene:Dr.30455
            ProteinModelPortal:Q7ZT82 SMR:Q7ZT82 STRING:Q7ZT82 PRIDE:Q7ZT82
            Ensembl:ENSDART00000027364 GeneID:407613 KEGG:dre:407613 CTD:407613
            InParanoid:Q7ZT82 OMA:LYRGGYN OrthoDB:EOG4CRM0S NextBio:20818492
            ArrayExpress:Q7ZT82 Bgee:Q7ZT82 Uniprot:Q7ZT82
        Length = 382

 Score = 90 (36.7 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
 Identities = 17/36 (47%), Positives = 26/36 (72%)

Query:    53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 88
             SKG+G+VTF +  EA +A   +NG +++GR I V+N
Sbjct:   185 SKGFGFVTFESAVEADRAREKLNGTIVEGRKIEVNN 220

 Score = 32 (16.3 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
 Identities = 6/18 (33%), Positives = 10/18 (55%)

Query:     2 LADAFSQFGQVTEDLVYF 19
             L   F QFG++ +  + F
Sbjct:   163 LRQMFGQFGKILDVEIIF 180


>UNIPROTKB|G3XAP0 [details] [associations]
            symbol:RBM23 "RNA binding motif protein 23, isoform CRA_f"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AL132780 EMBL:CH471078 EMBL:AL135998 UniGene:Hs.4997
            HGNC:HGNC:20155 ChiTaRS:RBM23 TIGRFAMs:TIGR01622
            ProteinModelPortal:G3XAP0 SMR:G3XAP0 Ensembl:ENST00000542016
            ArrayExpress:G3XAP0 Bgee:G3XAP0 Uniprot:G3XAP0
        Length = 269

 Score = 100 (40.3 bits), Expect = 7.4e-05, P = 7.4e-05
 Identities = 23/55 (41%), Positives = 32/55 (58%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
             ++ D    RSKGYG++TFS  E A++AL  +NG  L GR + V +V       TD
Sbjct:   124 LMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTD 178


>MGI|MGI:1330294 [details] [associations]
            symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
            evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
            replication origin binding" evidence=ISO] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=ISO] [GO:0043565
            "sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=ISO]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
            GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
            GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
            HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
            InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
            ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
            IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
            ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
            MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
            PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
            NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
            GermOnline:ENSMUSG00000020358 Uniprot:Q99020
        Length = 285

 Score = 83 (34.3 bits), Expect = 8.1e-05, Sum P(2) = 8.1e-05
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query:    43 TIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVI 84
             TI MD    RS+G+G++ F      +K L D     LDGRVI
Sbjct:   105 TIKMDPNTGRSRGFGFILFKDSSSVEKVL-DQKEHRLDGRVI 145

 Score = 35 (17.4 bits), Expect = 8.1e-05, Sum P(2) = 8.1e-05
 Identities = 6/13 (46%), Positives = 10/13 (76%)

Query:     2 LADAFSQFGQVTE 14
             L D F++FG+V +
Sbjct:    91 LKDYFTKFGEVVD 103


>UNIPROTKB|Q9QX80 [details] [associations]
            symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
            HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
            InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
            EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
            PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
            RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
            STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
            GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
            Genevestigator:Q9QX80 Uniprot:Q9QX80
        Length = 285

 Score = 83 (34.3 bits), Expect = 8.1e-05, Sum P(2) = 8.1e-05
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query:    43 TIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVI 84
             TI MD    RS+G+G++ F      +K L D     LDGRVI
Sbjct:   105 TIKMDPNTGRSRGFGFILFKDSSSVEKVL-DQKEHRLDGRVI 145

 Score = 35 (17.4 bits), Expect = 8.1e-05, Sum P(2) = 8.1e-05
 Identities = 6/13 (46%), Positives = 10/13 (76%)

Query:     2 LADAFSQFGQVTE 14
             L D F++FG+V +
Sbjct:    91 LKDYFTKFGEVVD 103


>UNIPROTKB|A9UMT9 [details] [associations]
            symbol:LOC100135403 "LOC100135403 protein" species:8364
            "Xenopus (Silurana) tropicalis" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
            GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
            GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
            GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081
            EMBL:BC157792 UniGene:Str.67350 ProteinModelPortal:A9UMT9
            STRING:A9UMT9 Uniprot:A9UMT9
        Length = 375

 Score = 102 (41.0 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 19/50 (38%), Positives = 34/50 (68%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV-RPS 92
             ++ D+  N+S+G+ +VTF +  +A+ A  ++NGK LDG+ I V+   +PS
Sbjct:    39 LMKDRETNKSRGFAFVTFESPADAKDAARELNGKALDGKPIKVEQATKPS 88


>FB|FBgn0085383 [details] [associations]
            symbol:CG34354 species:7227 "Drosophila melanogaster"
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0000166
            GO:GO:0003729 Gene3D:3.30.70.330 GeneTree:ENSGT00680000099967
            KO:K13201 RefSeq:NP_001097953.1 UniGene:Dm.16369
            ProteinModelPortal:A8JPX0 SMR:A8JPX0 EnsemblMetazoa:FBtr0112564
            GeneID:5740528 KEGG:dme:Dmel_CG34354 UCSC:CG34354-RA
            FlyBase:FBgn0085383 InParanoid:A8JPX0 OMA:KDAFTPF OrthoDB:EOG4FFBJQ
            PhylomeDB:A8JPX0 GenomeRNAi:5740528 NextBio:20891566 Bgee:A8JPX0
            Uniprot:A8JPX0
        Length = 525

 Score = 86 (35.3 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
 Identities = 17/41 (41%), Positives = 26/41 (63%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVI 84
             ++ D    +SKGYG+V+F  + EA+ A+  MNG+ L  R I
Sbjct:   127 VVRDPQTLKSKGYGFVSFVKKSEAETAITAMNGQWLGSRSI 167

 Score = 39 (18.8 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
 Identities = 6/13 (46%), Positives = 11/13 (84%)

Query:     2 LADAFSQFGQVTE 14
             L DAF+ FG++++
Sbjct:   112 LKDAFTPFGEISD 124


>TAIR|locus:2160210 [details] [associations]
            symbol:RBP45A "RNA-binding protein 45A" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
            ribonucleotide biosynthetic process" evidence=RCA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
            HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
            IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
            ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
            PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
            KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
            PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
            Uniprot:Q9FPJ8
        Length = 387

 Score = 102 (41.0 bits), Expect = 8.5e-05, P = 8.5e-05
 Identities = 20/57 (35%), Positives = 35/57 (61%)

Query:    32 FLISDSF------LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGR 82
             +++SD+F      +  A +++D+   RSKGYG+V F+ E E  +A+ +MNG+    R
Sbjct:   168 YMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTR 224


>UNIPROTKB|Q2KGN9 [details] [associations]
            symbol:MGCH7_ch7g296 "Putative uncharacterized protein"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0043581 "mycelium
            development" evidence=IEP] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0043581 EMBL:CM000230
            ProteinModelPortal:Q2KGN9 Uniprot:Q2KGN9
        Length = 375

 Score = 86 (35.3 bits), Expect = 8.7e-05, Sum P(2) = 8.7e-05
 Identities = 19/57 (33%), Positives = 33/57 (57%)

Query:    48 KGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
             +G NR  G  Y+ +  E +A+ A+A M+   +DG  + V  V P R+++ + P AR+
Sbjct:   179 QGTNR--GTAYILYVQEPDAESAIAHMHEGQIDGATVNVSIVLPRRKFSPEPPGARR 233

 Score = 35 (17.4 bits), Expect = 8.7e-05, Sum P(2) = 8.7e-05
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query:     2 LADAFSQFGQVTE-DL 16
             L D F Q+G++ + DL
Sbjct:   159 LRDIFGQYGEIRDLDL 174


>TAIR|locus:2055951 [details] [associations]
            symbol:AT2G22100 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007232
            HSSP:Q14103 ProtClustDB:CLSN2914947 IPI:IPI00529413 PIR:A84609
            RefSeq:NP_565526.1 UniGene:At.39482 ProteinModelPortal:Q9SHZ5
            SMR:Q9SHZ5 EnsemblPlants:AT2G22100.1 GeneID:816745
            KEGG:ath:AT2G22100 TAIR:At2g22100 InParanoid:Q9SHZ5 OMA:VFESADR
            PhylomeDB:Q9SHZ5 ArrayExpress:Q9SHZ5 Genevestigator:Q9SHZ5
            Uniprot:Q9SHZ5
        Length = 382

 Score = 88 (36.0 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
 Identities = 19/62 (30%), Positives = 36/62 (58%)

Query:    43 TIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLA 102
             +++MDK   R+KG+G+V F T + A+ AL +   ++ +  V    +  P+R +N+  P  
Sbjct:   193 SVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEKRMYNRTV----SCLPARPFNSGKPRE 248

Query:   103 RQ 104
             +Q
Sbjct:   249 QQ 250

 Score = 33 (16.7 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query:     2 LADAFSQFGQVTE 14
             L  AF  +G++TE
Sbjct:   179 LKAAFEVYGEITE 191


>RGD|69255 [details] [associations]
            symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
           species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
           mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
           evidence=IDA] [GO:0003688 "DNA replication origin binding"
           evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
           "cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
           evidence=ISO] [GO:0045892 "negative regulation of transcription,
           DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
           transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
           evidence=ISO] [GO:0003700 "sequence-specific DNA binding
           transcription factor activity" evidence=ISO] [GO:0043565
           "sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
           InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
           RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
           GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
           Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
           UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
           ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
           STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
           Uniprot:Q9Z0U8
        Length = 298

 Score = 83 (34.3 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query:    43 TIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVI 84
             TI MD    RS+G+G++ F      +K L D     LDGRVI
Sbjct:   118 TIKMDPNTGRSRGFGFILFKDSSSVEKVL-DQKEHRLDGRVI 158

 Score = 35 (17.4 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
 Identities = 6/13 (46%), Positives = 10/13 (76%)

Query:     2 LADAFSQFGQVTE 14
             L D F++FG+V +
Sbjct:   104 LKDYFTKFGEVVD 116


>ZFIN|ZDB-GENE-040704-9 [details] [associations]
            symbol:elavl2 "ELAV (embryonic lethal, abnormal
            vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
            rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
            IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
            Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
        Length = 388

 Score = 93 (37.8 bits), Expect = 0.00081, P = 0.00081
 Identities = 21/58 (36%), Positives = 32/58 (55%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPL 101
             ++ DK   +S GYG+V +   ++A+KA+  +NG  L  + I V   RPS     DA L
Sbjct:    99 LVRDKITGQSLGYGFVNYMEPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL 156

 Score = 88 (36.0 bits), Expect = 9.4e-05, Sum P(2) = 9.4e-05
 Identities = 18/43 (41%), Positives = 27/43 (62%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
             +I D   N+ KG+G+VT +  +EA  A+A +NG  L  RV+ V
Sbjct:   336 VIRDFNTNKCKGFGFVTMTNYDEAAVAIASLNGYRLGDRVLQV 378

 Score = 33 (16.7 bits), Expect = 9.4e-05, Sum P(2) = 9.4e-05
 Identities = 6/11 (54%), Positives = 8/11 (72%)

Query:     2 LADAFSQFGQV 12
             L   FSQFG++
Sbjct:   170 LEQLFSQFGRI 180


>UNIPROTKB|A4QUF0 [details] [associations]
            symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
            nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0043581 "mycelium
            development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
            EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
            SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
            KEGG:mgr:MGG_09505 Uniprot:A4QUF0
        Length = 762

 Score = 95 (38.5 bits), Expect = 9.5e-05, Sum P(2) = 9.5e-05
 Identities = 20/65 (30%), Positives = 37/65 (56%)

Query:    29 LHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 88
             LH    +   + +  +  D+  N SKGYG+V + T+E A +A+  +NG LL+ + ++V +
Sbjct:   165 LHDTFAAFGNILSCKVAQDENGN-SKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGH 223

Query:    89 VRPSR 93
               P +
Sbjct:   224 HIPKK 228

 Score = 91 (37.1 bits), Expect = 0.00025, Sum P(2) = 0.00025
 Identities = 18/71 (25%), Positives = 44/71 (61%)

Query:    41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
             ++++  D+   +S+G+G+V F++ E+A KA+ ++N K   G+ ++V   R  +++  +  
Sbjct:   270 SSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVG--RAQKKHEREEE 327

Query:   101 LARQSAQSPEE 111
             L R+S ++  +
Sbjct:   328 L-RKSYEAARQ 337

 Score = 86 (35.3 bits), Expect = 0.00081, Sum P(2) = 0.00081
 Identities = 15/40 (37%), Positives = 30/40 (75%)

Query:    48 KGK-NRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
             K K  +SKG+G+V F+  ++A KA+A+MN ++++ + ++V
Sbjct:   426 KSKLGKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYV 465

 Score = 33 (16.7 bits), Expect = 9.5e-05, Sum P(2) = 9.5e-05
 Identities = 7/12 (58%), Positives = 8/12 (66%)

Query:     1 MLADAFSQFGQV 12
             ML + FSQ G V
Sbjct:    76 MLFELFSQIGSV 87

 Score = 33 (16.7 bits), Expect = 0.00081, Sum P(2) = 0.00081
 Identities = 6/12 (50%), Positives = 8/12 (66%)

Query:     2 LADAFSQFGQVT 13
             L   FS+FG +T
Sbjct:   362 LRQLFSEFGPIT 373


>TAIR|locus:2179939 [details] [associations]
            symbol:AtRZ-1c "AtRZ-1c" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
            "RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0009409 "response to cold"
            evidence=IGI;IEP] [GO:0009414 "response to water deprivation"
            evidence=IEP] [GO:0009651 "response to salt stress" evidence=IEP]
            InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
            SMART:SM00343 SMART:SM00360 EMBL:CP002688 GO:GO:0005730
            GO:GO:0000166 GO:GO:0046872 GO:GO:0009409 GO:GO:0009414
            GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
            SUPFAM:SSF57756 HOGENOM:HOG000276232 HSSP:Q14103 KO:K12885
            ProtClustDB:CLSN2718554 EMBL:AY092975 EMBL:AY114645 IPI:IPI00520891
            RefSeq:NP_196048.1 UniGene:At.33149 ProteinModelPortal:Q8RWN5
            SMR:Q8RWN5 IntAct:Q8RWN5 STRING:Q8RWN5 PRIDE:Q8RWN5
            EnsemblPlants:AT5G04280.1 GeneID:830307 KEGG:ath:AT5G04280
            TAIR:At5g04280 InParanoid:Q8RWN5 OMA:ESIREMH PhylomeDB:Q8RWN5
            ArrayExpress:Q8RWN5 Genevestigator:Q8RWN5 Uniprot:Q8RWN5
        Length = 310

 Score = 86 (35.3 bits), Expect = 0.00010, Sum P(2) = 0.00010
 Identities = 14/48 (29%), Positives = 30/48 (62%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
             I++++   RS+G+G++TF+      +++ +M+G+    RVI V+   P
Sbjct:    38 IMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRAEP 85

 Score = 32 (16.3 bits), Expect = 0.00010, Sum P(2) = 0.00010
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query:     2 LADAFSQFGQVTE 14
             L  AFS+FG + +
Sbjct:    23 LERAFSRFGDILD 35


>TAIR|locus:2086884 [details] [associations]
            symbol:NUC-L2 "nucleolin like 2" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 EMBL:AP001303
            eggNOG:COG0724 KO:K11294 HOGENOM:HOG000124794
            ProtClustDB:CLSN2705589 EMBL:DQ446672 IPI:IPI00518455
            RefSeq:NP_188491.1 UniGene:At.53375 ProteinModelPortal:Q1PEP5
            SMR:Q1PEP5 STRING:Q1PEP5 PaxDb:Q1PEP5 PRIDE:Q1PEP5
            EnsemblPlants:AT3G18610.1 GeneID:821392 KEGG:ath:AT3G18610
            TAIR:At3g18610 InParanoid:Q1PEP5 OMA:NIHVEES ArrayExpress:Q1PEP5
            Genevestigator:Q1PEP5 Uniprot:Q1PEP5
        Length = 636

 Score = 104 (41.7 bits), Expect = 0.00010, P = 0.00010
 Identities = 27/57 (47%), Positives = 39/57 (68%)

Query:    54 KGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSRRYNTDAPLARQSAQS 108
             KGYG++ F++ EEAQKAL +MNGKLL GR + +D  N R + R N++     + +QS
Sbjct:   424 KGYGHIEFASPEEAQKAL-EMNGKLLLGRDVRLDLANERGTPR-NSNPGRKGEGSQS 478


>UNIPROTKB|F1RKX4 [details] [associations]
            symbol:RBFOX1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0008022 "protein C-terminus binding" evidence=IEA]
            [GO:0005802 "trans-Golgi network" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0005802 GeneTree:ENSGT00390000013767
            EMBL:CU464000 EMBL:CU694874 Ensembl:ENSSSCT00000008677 OMA:PPENTEN
            Uniprot:F1RKX4
        Length = 234

 Score = 82 (33.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
 Identities = 15/36 (41%), Positives = 25/36 (69%)

Query:    53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 88
             SKG+G+VTF    +A +A   ++G +++GR I V+N
Sbjct:   159 SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 194

 Score = 32 (16.3 bits), Expect = 0.00011, Sum P(2) = 0.00011
 Identities = 6/18 (33%), Positives = 10/18 (55%)

Query:     2 LADAFSQFGQVTEDLVYF 19
             L   F QFG++ +  + F
Sbjct:   137 LRQMFGQFGKILDVEIIF 154


>SGD|S000005964 [details] [associations]
            symbol:NOP4 "Nucleolar protein" species:4932 "Saccharomyces
            cerevisiae" [GO:0006364 "rRNA processing" evidence=IEA;TAS]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA;ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA;TAS] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 SGD:S000005964 GO:GO:0005730
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BK006949
            GO:GO:0006364 EMBL:U44030 EMBL:U02598 EMBL:X76245 PIR:S46365
            RefSeq:NP_015282.1 ProteinModelPortal:P37838 SMR:P37838
            DIP:DIP-3891N IntAct:P37838 MINT:MINT-559282 STRING:P37838
            PaxDb:P37838 PeptideAtlas:P37838 EnsemblFungi:YPL043W GeneID:856063
            KEGG:sce:YPL043W CYGD:YPL043w eggNOG:NOG323727
            GeneTree:ENSGT00550000074976 HOGENOM:HOG000187841 KO:K14573
            OMA:SSHRWAL OrthoDB:EOG4K6KCP NextBio:981044 Genevestigator:P37838
            GermOnline:YPL043W Uniprot:P37838
        Length = 685

 Score = 94 (38.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
 Identities = 21/71 (29%), Positives = 40/71 (56%)

Query:    42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV-RPSRRYNTDAP 100
             A ++ D  K RS+G+G+V+F+ E++ ++ALA       +G ++ VD   R  R   T   
Sbjct:    55 AVVVKDTNK-RSRGFGFVSFAVEDDTKEALAKARKTKFNGHILRVDIAKRRDRSKKTSEV 113

Query:   101 LARQSAQSPEE 111
             + + + +S E+
Sbjct:   114 VEKSTPESSEK 124

 Score = 32 (16.3 bits), Expect = 0.00012, Sum P(2) = 0.00012
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query:     2 LADAFSQFGQVTEDLV 17
             LAD FS F  +   +V
Sbjct:    42 LADFFSNFAPIKHAVV 57


>DICTYBASE|DDB_G0292698 [details] [associations]
            symbol:DDB_G0292698 "RNA-binding region RNP-1
            domain-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0044351 "macropinocytosis" evidence=RCA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 dictyBase:DDB_G0292698 GO:GO:0000166
            EMBL:AAFI02000194 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG297815
            RefSeq:XP_629578.1 ProteinModelPortal:Q54CU2 STRING:Q54CU2
            PRIDE:Q54CU2 EnsemblProtists:DDB0233351 GeneID:8628839
            KEGG:ddi:DDB_G0292698 InParanoid:Q54CU2 OMA:DPNTKES Uniprot:Q54CU2
        Length = 306

 Score = 99 (39.9 bits), Expect = 0.00012, P = 0.00012
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query:    43 TIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
             TI++D     S+G+G+VT+S+ +EAQ A+  ++   +DG  I V+  + S+
Sbjct:   101 TILLDPNTKESRGFGFVTYSSGDEAQDAIQRLDSTKIDGNTIRVEKSKRSK 151


>UNIPROTKB|E9PTS0 [details] [associations]
            symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
            Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
        Length = 331

 Score = 83 (34.3 bits), Expect = 0.00013, Sum P(2) = 0.00013
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query:    43 TIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVI 84
             TI MD    RS+G+G++ F      +K L D     LDGRVI
Sbjct:   104 TIKMDPNTGRSRGFGFILFKDSSSVEKVL-DQKEHRLDGRVI 144

 Score = 35 (17.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
 Identities = 6/13 (46%), Positives = 10/13 (76%)

Query:     2 LADAFSQFGQVTE 14
             L D F++FG+V +
Sbjct:    90 LKDYFTKFGEVVD 102


>CGD|CAL0004726 [details] [associations]
            symbol:orf19.7368 species:5476 "Candida albicans" [GO:0010494
            "cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0008266
            "poly(U) RNA binding" evidence=IEA] [GO:0043488 "regulation of mRNA
            stability" evidence=IEA] [GO:0034063 "stress granule assembly"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            CGD:CAL0004726 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AACQ01000066 eggNOG:COG0724 HOGENOM:HOG000206748 KO:K13201
            RefSeq:XP_716609.1 ProteinModelPortal:Q5A4G6 STRING:Q5A4G6
            GeneID:3641737 KEGG:cal:CaO19.7368 Uniprot:Q5A4G6
        Length = 510

 Score = 102 (41.0 bits), Expect = 0.00013, P = 0.00013
 Identities = 20/43 (46%), Positives = 29/43 (67%)

Query:    42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVI 84
             A ++ D   +RS+GYG+VTF  + +A+ AL  MNG+ L GR I
Sbjct:   202 AHVMWDMQTSRSRGYGFVTFGNQSDAELALQTMNGEWLCGRAI 244


>UNIPROTKB|Q9QX81 [details] [associations]
            symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=ISS] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISS] [GO:0043565
            "sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
            EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
            GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
            Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
            PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
            GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
            RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
            Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
            Uniprot:Q9QX81
        Length = 332

 Score = 83 (34.3 bits), Expect = 0.00013, Sum P(2) = 0.00013
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query:    43 TIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVI 84
             TI MD    RS+G+G++ F      +K L D     LDGRVI
Sbjct:   105 TIKMDPNTGRSRGFGFILFKDSSSVEKVL-DQKEHRLDGRVI 145

 Score = 35 (17.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
 Identities = 6/13 (46%), Positives = 10/13 (76%)

Query:     2 LADAFSQFGQVTE 14
             L D F++FG+V +
Sbjct:    91 LKDYFTKFGEVVD 103


>TAIR|locus:2037370 [details] [associations]
            symbol:AT1G20880 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            IPI:IPI00530203 RefSeq:NP_001185049.1 RefSeq:NP_564127.1
            UniGene:At.26164 ProteinModelPortal:F4HUQ5 SMR:F4HUQ5 PRIDE:F4HUQ5
            EnsemblPlants:AT1G20880.1 EnsemblPlants:AT1G20880.2 GeneID:838681
            KEGG:ath:AT1G20880 OMA:MAYHSIP Uniprot:F4HUQ5
        Length = 274

 Score = 98 (39.6 bits), Expect = 0.00013, P = 0.00013
 Identities = 20/44 (45%), Positives = 27/44 (61%)

Query:    39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGR 82
             +  A +I DK   RSKGYG+VTF   E A++A  D    ++DGR
Sbjct:    50 ILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDPT-PIIDGR 92


>TAIR|locus:2157702 [details] [associations]
            symbol:CP31B "chloroplast RNA-binding protein 31B"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
            evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
            [GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
            "chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
            evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
            [GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
            "response to cold" evidence=RCA] [GO:0009697 "salicylic acid
            biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
            incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
            membrane organization" evidence=RCA] [GO:0019252 "starch
            biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
            diphosphate biosynthetic process, mevalonate-independent pathway"
            evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
            evidence=RCA] [GO:0042742 "defense response to bacterium"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
            eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
            ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
            EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
            ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
            PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
            KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
            PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
        Length = 289

 Score = 98 (39.6 bits), Expect = 0.00014, P = 0.00014
 Identities = 21/52 (40%), Positives = 32/52 (61%)

Query:    42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
             A ++ D+   RS+G+G+V  S E E   A+A ++G+ L+GR I V NV   R
Sbjct:   236 ARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKV-NVAEER 286

 Score = 94 (38.1 bits), Expect = 0.00039, P = 0.00039
 Identities = 18/48 (37%), Positives = 32/48 (66%)

Query:    44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
             +I ++  ++S+G+G+VT ST EEA+KA+   N   ++GR + V+   P
Sbjct:   144 VIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAP 191

WARNING:  HSPs involving 143 database sequences were not reported due to the
          limiting value of parameter B = 250.


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.387    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      112       112   0.00091  102 3  11 22  0.43    30
                                                     29  0.43    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  393
  No. of states in DFA:  494 (53 KB)
  Total size of DFA:  99 KB (2071 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.20u 0.12s 12.32t   Elapsed:  00:00:00
  Total cpu time:  12.21u 0.12s 12.33t   Elapsed:  00:00:00
  Start:  Fri May 10 02:37:52 2013   End:  Fri May 10 02:37:52 2013
WARNINGS ISSUED:  2
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT2G37510 AT2G37510 AT2G37510	protein from Arabidopsis thaliana	1.2e-14
BLAST match view associations BLAST with AT5G06210 AT5G06210 AT5G06210	protein from Arabidopsis thaliana	2.1e-13
BLAST match view associations BLAST with AT1G73530 AT1G73530 AT1G73530	protein from Arabidopsis thaliana	7.4e-12
BLAST match view associations BLAST with AT3G46020 AT3G46020 AT3G46020	protein from Arabidopsis thaliana	4.9e-11
BLAST match view associations BLAST with AT5G54580 AT5G54580 AT5G54580	protein from Arabidopsis thaliana	1.6e-10
BLAST match view associations BLAST with GRP4 GRP4 GRP4 AT3G23830	protein from Arabidopsis thaliana	2.6e-10
BLAST match view associations BLAST with AT2G27330 AT2G27330 AT2G27330	protein from Arabidopsis thaliana	4.1e-10
BLAST match view associations BLAST with F6RBQ9 F6RBQ9 F6RBQ9 Uncharacterized protein	protein from Bos taurus	4.2e-10
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	4.2e-10
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Sus scrofa	4.2e-10
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Rana catesbeiana	5.3e-10
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Xenopus (Silurana) tropicalis	5.3e-10
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif protein 3	protein from Mus musculus	5.3e-10
BLAST match view associations BLAST with cirbp cirbp cirbp cold inducible RNA binding protein	gene_product from Danio rerio	6.7e-10
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Putative RNA-binding protein 3	protein from Homo sapiens	6.8e-10
BLAST match view associations BLAST with AT5G19030 AT5G19030 AT5G19030	protein from Arabidopsis thaliana	6.8e-10
BLAST match view associations BLAST with ATRZ-1A ATRZ-1A ATRZ-1A AT3G26420	protein from Arabidopsis thaliana	7.9e-10
BLAST match view associations BLAST with CCR1 CCR1 CCR1 AT4G39260	protein from Arabidopsis thaliana	1.1e-09
BLAST match view associations BLAST with cirbp-b cirbp-b cirbp-b Cold-inducible RNA-binding protein B	protein from Xenopus laevis	1.1e-09
BLAST match view associations BLAST with zgc:112425 zgc:112425 zgc:112425	gene_product from Danio rerio	1.1e-09
BLAST match view associations BLAST with PABPC1L PABPC1L PABPC1L Uncharacterized protein	protein from Gallus gallus	1.1e-09
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif (RNP1, RRM) protein 3	gene from Rattus norvegicus	1.4e-09
BLAST match view associations BLAST with AT5G59860 AT5G59860 AT5G59860	protein from Arabidopsis thaliana	1.8e-09
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Canis lupus familiaris	2.2e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	2.2e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	2.2e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	2.2e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.2e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.2e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.2e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.2e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.2e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Sus scrofa	2.2e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Cricetulus griseus	2.2e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Pongo abelii	2.2e-09
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	protein from Mus musculus	2.2e-09
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	gene from Rattus norvegicus	2.2e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	2.4e-09
BLAST match view associations BLAST with MCA1010 MCA1010 MCA1010 RNA-binding protein	protein from Methylococcus capsulatus str. Bath	2.9e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	3.2e-09
BLAST match view associations BLAST with blt801 blt801 blt801 Glycine-rich RNA-binding protein blt801	protein from Hordeum vulgare	3.6e-09
BLAST match view associations BLAST with cirbp-a cirbp-a cirbp-a Cold-inducible RNA-binding protein A	protein from Xenopus laevis	3.6e-09
BLAST match view associations BLAST with GR-RBP2 GR-RBP2 GR-RBP2 AT4G13850	protein from Arabidopsis thaliana	3.6e-09
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Canis lupus familiaris	4.5e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	5.3e-09
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Polyadenylate-binding protein 4	protein from Homo sapiens	5.3e-09
BLAST match view associations BLAST with AT4G13860 AT4G13860 AT4G13860	protein from Arabidopsis thaliana	5.7e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Bos taurus	7.7e-09
BLAST match view associations BLAST with epabp-a epabp-a epabp-a Embryonic polyadenylate-binding protein A	protein from Xenopus laevis	2.1e-08
BLAST match view associations BLAST with CIRBP CIRBP CIRBP cDNA FLJ52850, moderately similar to Cold-inducible RNA-binding protein	protein from Homo sapiens	3.1e-08
BLAST match view associations BLAST with epabp-b epabp-b epabp-b Embryonic polyadenylate-binding protein B	protein from Xenopus laevis	3.3e-08
BLAST match view associations BLAST with epabp epabp epabp Embryonic polyadenylate-binding protein	protein from Xenopus (Silurana) tropicalis	3.3e-08
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	4.0e-08
BLAST match view associations BLAST with GRP7 GRP7 GRP7 AT2G21660	protein from Arabidopsis thaliana	5.6e-08
BLAST match view associations BLAST with PABPC1L PABPC1L PABPC1L Uncharacterized protein	protein from Sus scrofa	6.6e-08
BLAST match view associations BLAST with GR-RBP6 GR-RBP6 GR-RBP6 AT1G18630	protein from Arabidopsis thaliana	7.8e-08
BLAST match view associations BLAST with AT1G78260 AT1G78260 AT1G78260	protein from Arabidopsis thaliana	1.1e-07
BLAST match view associations BLAST with PABPC1L PABPC1L PABPC1L Uncharacterized protein	protein from Canis lupus familiaris	1.2e-07
BLAST match view associations BLAST with AT3G08000 AT3G08000 AT3G08000	protein from Arabidopsis thaliana	1.2e-07
BLAST match view associations BLAST with PABPC1L PABPC1L PABPC1L Uncharacterized protein	protein from Bos taurus	1.4e-07
BLAST match view associations BLAST with pabpc1-b pabpc1-b pabpc1-b Polyadenylate-binding protein 1-B	protein from Xenopus laevis	1.5e-07
BLAST match view associations BLAST with ORRM1 ORRM1 ORRM1 AT3G20930	protein from Arabidopsis thaliana	1.5e-07
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Polyadenylate-binding protein 4	protein from Homo sapiens	1.6e-07
BLAST match view associations BLAST with AT1G33470 AT1G33470 AT1G33470	protein from Arabidopsis thaliana	1.7e-07
BLAST match view associations BLAST with orf19.6090 orf19.6090 orf19.6090	gene_product from Candida albicans	1.7e-07
BLAST match view associations BLAST with NSR1 NSR1 NSR1 Potential nuclear localization sequence binding protein Nsr1p	protein from Candida albicans SC5314	1.7e-07
BLAST match view associations BLAST with PABPC3 PABPC3 PABPC3 Polyadenylate-binding protein 3	protein from Homo sapiens	1.8e-07
BLAST match view associations BLAST with GSU1324 GSU1324 GSU1324 RNA-binding protein	protein from Geobacter sulfurreducens PCA	1.8e-07
BLAST match view associations BLAST with GSU_1324 GSU_1324 GSU_1324 RNA-binding protein	protein from Geobacter sulfurreducens PCA	1.8e-07
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Uncharacterized protein	protein from Canis lupus familiaris	1.8e-07
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Uncharacterized protein	protein from Sus scrofa	1.8e-07
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Polyadenylate-binding protein 4	protein from Homo sapiens	2.2e-07
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Uncharacterized protein	protein from Gallus gallus	2.3e-07
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Uncharacterized protein	protein from Canis lupus familiaris	2.4e-07
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Polyadenylate-binding protein 4	protein from Homo sapiens	2.5e-07
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 PABPC4 protein	protein from Bos taurus	2.5e-07
BLAST match view associations BLAST with NSR1 NSR1 NSR1 Nucleolar protein that binds nuclear localization sequences	gene from Saccharomyces cerevisiae	3.1e-07
BLAST match view associations BLAST with MGG_01268 MGG_01268 MGG_01268 Nuclear localization sequence binding protein	protein from Magnaporthe oryzae 70-15	3.1e-07
BLAST match view associations BLAST with RPS19 RPS19 RPS19 AT5G47320	protein from Arabidopsis thaliana	3.7e-07
BLAST match view associations BLAST with PABPC3 PABPC3 PABPC3 Polyadenylate-binding protein 3	protein from Homo sapiens	3.7e-07
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Polyadenylate-binding protein 1	protein from Homo sapiens	3.8e-07
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Uncharacterized protein	protein from Gallus gallus	3.8e-07
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Polyadenylate-binding protein 1	protein from Homo sapiens	4.1e-07
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Uncharacterized protein	protein from Canis lupus familiaris	4.2e-07
BLAST match view associations BLAST with pabpc1l pabpc1l pabpc1l poly(A) binding protein, cytoplasmic 1-like	gene_product from Danio rerio	4.6e-07
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Polyadenylate-binding protein 1	protein from Bos taurus	4.9e-07
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Uncharacterized protein	protein from Canis lupus familiaris	4.9e-07
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Polyadenylate-binding protein 1	protein from Homo sapiens	4.9e-07
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Uncharacterized protein	protein from Sus scrofa	4.9e-07
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Polyadenylate-binding protein 1	protein from Pongo abelii	4.9e-07
BLAST match view associations BLAST with Pabpc1 Pabpc1 Pabpc1 poly(A) binding protein, cytoplasmic 1	protein from Mus musculus	4.9e-07
BLAST match view associations BLAST with Pabpc1 Pabpc1 Pabpc1 poly(A) binding protein, cytoplasmic 1	gene from Rattus norvegicus	4.9e-07
BLAST match view associations BLAST with Pabpc6 Pabpc6 Pabpc6 poly(A) binding protein, cytoplasmic 6	gene from Rattus norvegicus	5.1e-07
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Polyadenylate-binding protein 4	protein from Homo sapiens	5.2e-07
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Uncharacterized protein	protein from Sus scrofa	5.2e-07
BLAST match view associations BLAST with pabpc1A pabpc1A pabpc1A polyadenylate binding protein (PABP)	gene from Dictyostelium discoideum	5.9e-07
BLAST match view associations BLAST with I3LQ36 I3LQ36 I3LQ36 Uncharacterized protein	protein from Sus scrofa	6.1e-07
BLAST match view associations BLAST with Pabpc1l Pabpc1l Pabpc1l poly(A) binding protein, cytoplasmic 1-like	gene from Rattus norvegicus	7.3e-07