BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033751
(112 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224091949|ref|XP_002309412.1| predicted protein [Populus trichocarpa]
gi|222855388|gb|EEE92935.1| predicted protein [Populus trichocarpa]
Length = 139
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 59/102 (57%), Gaps = 27/102 (26%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L++AFSQ+GQV E A I+MD+ +RSKG+G+VT+
Sbjct: 55 LSEAFSQYGQVVE---------------------------AKIVMDRALDRSKGFGFVTY 87
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLAR 103
++E+EAQKAL +MNGK L+GRVI+VD + + P+AR
Sbjct: 88 ASEDEAQKALDEMNGKALNGRVIYVDYAKLKTNFGGGIPIAR 129
>gi|255579369|ref|XP_002530529.1| RNA binding protein, putative [Ricinus communis]
gi|223529933|gb|EEF31861.1| RNA binding protein, putative [Ricinus communis]
Length = 127
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 27/102 (26%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L +AFSQ+GQV E ATI+ D+ +RSKG+G+VTF
Sbjct: 47 LTEAFSQYGQVVE---------------------------ATIVSDRVLDRSKGFGFVTF 79
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLAR 103
++E+EA AL++MNGK L+GRVI+VD +P + P+AR
Sbjct: 80 ASEDEAHNALSEMNGKTLNGRVIYVDYAKPRTDSRNEVPIAR 121
>gi|359482021|ref|XP_002276063.2| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Vitis vinifera]
gi|297740158|emb|CBI30340.3| unnamed protein product [Vitis vinifera]
Length = 133
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 57/102 (55%), Gaps = 27/102 (26%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L++ FSQ+GQV E A I+MD+ +RSKG+G+VTF
Sbjct: 50 LSEHFSQYGQVVE---------------------------AKIVMDRVSDRSKGFGFVTF 82
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLAR 103
++EEEAQKA +M+GK L+GR IFVD +P + P+AR
Sbjct: 83 ASEEEAQKARTEMDGKELNGRTIFVDYAKPRADFGGGMPIAR 124
>gi|449500867|ref|XP_004161215.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 134
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 62/111 (55%), Gaps = 30/111 (27%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L++AFSQ+GQV E AT++MD+ ++SKG+G+VTF
Sbjct: 51 LSEAFSQYGQVIE---------------------------ATVVMDRVSDKSKGFGFVTF 83
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQSAQSPEEN 112
++ +EA AL++MNGK L+GRVIFV+ +P+ P+AR PEE
Sbjct: 84 ASLDEAHTALSEMNGKPLNGRVIFVNYAKPTTSSRGAIPIAR---GPPEEK 131
>gi|449462934|ref|XP_004149190.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 134
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 62/111 (55%), Gaps = 30/111 (27%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L++AFSQ+GQV E AT++MD+ ++SKG+G+VTF
Sbjct: 51 LSEAFSQYGQVIE---------------------------ATVVMDRVSDKSKGFGFVTF 83
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQSAQSPEEN 112
++ +EA AL++MNGK L+GRVIFV+ +P+ P+AR PEE
Sbjct: 84 ASLDEAHTALSEMNGKPLNGRVIFVNYAKPTTSSRGAIPIAR---GPPEEK 131
>gi|351724633|ref|NP_001238088.1| uncharacterized protein LOC100527061 [Glycine max]
gi|255631468|gb|ACU16101.1| unknown [Glycine max]
Length = 113
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 50/92 (54%), Gaps = 27/92 (29%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
LA AFSQ+G V A II++K KNRSKG+GYV F
Sbjct: 49 LAKAFSQYGSV---------------------------LKANIILNKAKNRSKGFGYVIF 81
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
+ EEEA KA DMNGK+L GRVI+VD P++
Sbjct: 82 AKEEEACKAQIDMNGKILHGRVIYVDVQLPNK 113
>gi|388502672|gb|AFK39402.1| unknown [Medicago truncatula]
Length = 140
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 57/102 (55%), Gaps = 27/102 (26%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L+DAFS +GQV E A +I D+ +SKGYG+VTF
Sbjct: 48 LSDAFSNYGQVVE---------------------------AKVITDRISEKSKGYGFVTF 80
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLAR 103
++++EA+KA+ +MN K L+GRV+FVD +P + + P+AR
Sbjct: 81 ASQDEAEKAITEMNEKALNGRVVFVDYAKPDTKRSMGMPIAR 122
>gi|255565709|ref|XP_002523844.1| Cold-inducible RNA-binding protein, putative [Ricinus communis]
gi|223536932|gb|EEF38570.1| Cold-inducible RNA-binding protein, putative [Ricinus communis]
Length = 121
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 49/88 (55%), Gaps = 27/88 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L +AFS+FG++ E II DK +R KGY YVTF
Sbjct: 50 LTEAFSKFGEIVE---------------------------VNIIKDKAMDRPKGYAYVTF 82
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNV 89
+TE EA+KAL +MNGK++DGR +FVDNV
Sbjct: 83 ATENEAKKALTEMNGKVIDGRPVFVDNV 110
>gi|361067299|gb|AEW07961.1| Pinus taeda anonymous locus 0_15424_01 genomic sequence
gi|383126579|gb|AFG43909.1| Pinus taeda anonymous locus 0_15424_01 genomic sequence
gi|383126581|gb|AFG43910.1| Pinus taeda anonymous locus 0_15424_01 genomic sequence
gi|383126583|gb|AFG43911.1| Pinus taeda anonymous locus 0_15424_01 genomic sequence
gi|383126585|gb|AFG43912.1| Pinus taeda anonymous locus 0_15424_01 genomic sequence
gi|383126587|gb|AFG43913.1| Pinus taeda anonymous locus 0_15424_01 genomic sequence
gi|383126589|gb|AFG43914.1| Pinus taeda anonymous locus 0_15424_01 genomic sequence
gi|383126591|gb|AFG43915.1| Pinus taeda anonymous locus 0_15424_01 genomic sequence
Length = 84
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 27/99 (27%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L +AFS+FG+V E I+MD+ RSKG+G+V +
Sbjct: 4 LTEAFSRFGEVVE---------------------------VKIVMDRVSQRSKGFGFVQY 36
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
++E +A++A A+MNGK+L GR+IFVD+V+P + + D P
Sbjct: 37 ASEADAERAKAEMNGKVLSGRIIFVDDVKPKSQLSGDLP 75
>gi|357167535|ref|XP_003581210.1| PREDICTED: 40S ribosomal protein S19, mitochondrial-like
[Brachypodium distachyon]
Length = 137
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 58/102 (56%), Gaps = 28/102 (27%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
LA+AF+++GQV E ATI+ DK NRSKG+G+V F
Sbjct: 52 LAEAFARYGQVLE---------------------------ATIVTDKMTNRSKGFGFVKF 84
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDA-PLA 102
++EEEA KA +MNGK+L+GRVI+VD + + TD P+A
Sbjct: 85 ASEEEANKARDEMNGKVLNGRVIYVDIAKAKQDRATDVLPIA 126
>gi|359479548|ref|XP_003632289.1| PREDICTED: cold-inducible RNA-binding protein-like [Vitis vinifera]
gi|296084877|emb|CBI28286.3| unnamed protein product [Vitis vinifera]
Length = 111
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 49/86 (56%), Gaps = 27/86 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
LA+AFSQFG+V E A IIMDK K R KG+ YVTF
Sbjct: 50 LAEAFSQFGEVVE---------------------------AKIIMDKRKLRPKGFAYVTF 82
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD 87
+ E+EA+KAL +MNGK++DGR + VD
Sbjct: 83 TREDEAEKALTEMNGKVVDGRTVLVD 108
>gi|351725383|ref|NP_001238370.1| uncharacterized protein LOC100527079 [Glycine max]
gi|255631508|gb|ACU16121.1| unknown [Glycine max]
Length = 130
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 57/102 (55%), Gaps = 27/102 (26%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L++AFS +GQV E A I+ D+ +RSKG+G+VTF
Sbjct: 45 LSEAFSNYGQVIE---------------------------AKIVTDRVSDRSKGFGFVTF 77
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLAR 103
++++EA+ A+ DM GK L+GRVIFVD +P+ + P+AR
Sbjct: 78 ASQDEAENAIEDMKGKTLNGRVIFVDYAKPNINTRGEIPIAR 119
>gi|116781215|gb|ABK22008.1| unknown [Picea sitchensis]
Length = 140
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 27/101 (26%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L +AFS+FG+V E ++MD+ RSKG+G+V +
Sbjct: 48 LTEAFSRFGEVVE---------------------------VKVVMDRVSQRSKGFGFVQY 80
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLA 102
++E +A++A A+MNGK+L GR+IFVD V+P + + D P A
Sbjct: 81 ASEADAERAKAEMNGKVLSGRIIFVDTVKPKSQLSGDLPSA 121
>gi|38344030|emb|CAE01512.2| OJ991214_12.1 [Oryza sativa Japonica Group]
gi|38346331|emb|CAE02067.2| OJ000126_13.13 [Oryza sativa Japonica Group]
gi|116309334|emb|CAH66418.1| H0622F05.1 [Oryza sativa Indica Group]
gi|116309399|emb|CAH66476.1| OSIGBa0137L20.5 [Oryza sativa Indica Group]
Length = 137
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 58/110 (52%), Gaps = 28/110 (25%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
LA+AFSQ+GQV E ATI+ DK NR KG+G+V F
Sbjct: 53 LAEAFSQYGQVLE---------------------------ATIVTDKMTNRPKGFGFVKF 85
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD-APLARQSAQSPE 110
++EE A KA +MNGK+L+GRVI+VD + TD +P A + P+
Sbjct: 86 ASEEAANKAKEEMNGKVLNGRVIYVDIAKAKMNRTTDSSPRATGPPKPPD 135
>gi|361067297|gb|AEW07960.1| Pinus taeda anonymous locus 0_15424_01 genomic sequence
Length = 84
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 27/99 (27%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L +AFS+FG+V E I+MD+ RSKG+G+V +
Sbjct: 4 LTEAFSRFGEVVE---------------------------VKIVMDRVSQRSKGFGFVQY 36
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
++E +A++A A+MNGK+L GR+IFVD+V+ + + D P
Sbjct: 37 ASEADAERAKAEMNGKVLSGRIIFVDDVKAKSQLSGDLP 75
>gi|357457753|ref|XP_003599157.1| Cold-inducible RNA-binding protein [Medicago truncatula]
gi|355488205|gb|AES69408.1| Cold-inducible RNA-binding protein [Medicago truncatula]
Length = 134
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 52/95 (54%), Gaps = 27/95 (28%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
LA+AFSQ+G V + A I+++K K R KG+GYVTF
Sbjct: 48 LAEAFSQYGNVVK---------------------------ADIVLNKAKKRCKGFGYVTF 80
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 96
+ EEEA+KA MNGK+L GRV++VD P+ + N
Sbjct: 81 AEEEEARKAQIGMNGKILHGRVLYVDMDPPNEQKN 115
>gi|406950086|gb|EKD80418.1| cp31AHv protein [uncultured bacterium]
Length = 122
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%)
Query: 29 LHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 88
L F + +A +I D+ RSKG+G+V S++EEAQKA+A++NGK LDGR I V+
Sbjct: 19 LQAFFSQAGTVSSARVITDRATGRSKGFGFVEMSSDEEAQKAVAELNGKELDGRAIVVNE 78
Query: 89 VRP 91
RP
Sbjct: 79 ARP 81
>gi|388521117|gb|AFK48620.1| unknown [Lotus japonicus]
Length = 161
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 27/93 (29%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
LA+AFSQ+G+V A I++++ K RSKG+GYVTF
Sbjct: 85 LAEAFSQYGKV---------------------------LKADIVLNRAKTRSKGFGYVTF 117
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
+ EE+AQKA MN K+L GRV++VD P +
Sbjct: 118 AKEEDAQKAQIGMNRKILHGRVLYVDMEPPDKH 150
>gi|224104887|ref|XP_002313606.1| predicted protein [Populus trichocarpa]
gi|222850014|gb|EEE87561.1| predicted protein [Populus trichocarpa]
Length = 109
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 27/85 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
+A+AFS+FG+V E A I+MDK + R KGYG+VTF
Sbjct: 50 IAEAFSEFGEVIE---------------------------AKIVMDKARKRPKGYGFVTF 82
Query: 62 STEEEAQKALADMNGKLLDGRVIFV 86
+ ++ A+KA MNGKLLDGR I+V
Sbjct: 83 AKKDAAEKACEGMNGKLLDGRAIYV 107
>gi|116779573|gb|ABK21345.1| unknown [Picea sitchensis]
gi|224285462|gb|ACN40453.1| unknown [Picea sitchensis]
Length = 198
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 39/51 (76%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
IIM+K RSKG+G+V FSTEEEA AL +MNGK+L+G +I VD +P+ R
Sbjct: 119 IIMNKTTRRSKGFGFVEFSTEEEANTALKEMNGKILNGWLISVDIAKPTPR 169
>gi|15239958|ref|NP_196239.1| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana]
gi|9759319|dbj|BAB09686.1| unnamed protein product [Arabidopsis thaliana]
gi|17065276|gb|AAL32792.1| Unknown protein [Arabidopsis thaliana]
gi|20260002|gb|AAM13348.1| unknown protein [Arabidopsis thaliana]
gi|21593170|gb|AAM65119.1| unknown [Arabidopsis thaliana]
gi|332003601|gb|AED90984.1| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana]
Length = 146
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 29/104 (27%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L++AFS+ GQV E A I+MD+ +RSKG+G+VTF
Sbjct: 50 LSEAFSKCGQVVE---------------------------AQIVMDRVSDRSKGFGFVTF 82
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDA--PLAR 103
++ +EAQKAL + NG+ L+GR IFVD + + P+AR
Sbjct: 83 ASADEAQKALMEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIAR 126
>gi|297806641|ref|XP_002871204.1| hypothetical protein ARALYDRAFT_487428 [Arabidopsis lyrata subsp.
lyrata]
gi|297317041|gb|EFH47463.1| hypothetical protein ARALYDRAFT_487428 [Arabidopsis lyrata subsp.
lyrata]
Length = 144
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 56/103 (54%), Gaps = 28/103 (27%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L++AFS+ GQV E A I+MD+ +RSKG+G+VTF
Sbjct: 50 LSEAFSKCGQVVE---------------------------AQIVMDRVSDRSKGFGFVTF 82
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDA-PLAR 103
++ +EAQKAL + NG+ +GRVIFVD + + + P+AR
Sbjct: 83 ASVDEAQKALMEFNGQQFNGRVIFVDYAKAKQSFGGGRYPIAR 125
>gi|357510439|ref|XP_003625508.1| RNA binding protein [Medicago truncatula]
gi|355500523|gb|AES81726.1| RNA binding protein [Medicago truncatula]
Length = 141
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 46/90 (51%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L +AFS FGQ+ E A +I D+G RSKG+ +V++
Sbjct: 51 LTEAFSPFGQLLE---------------------------AKVITDRGSGRSKGFAFVSY 83
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
ST EEA+KA MN K LDG VIFVD +P
Sbjct: 84 STIEEAEKAREGMNAKFLDGWVIFVDPAKP 113
>gi|30683481|ref|NP_565646.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|106879155|gb|ABF82607.1| At2g27330 [Arabidopsis thaliana]
gi|330252880|gb|AEC07974.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 116
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 27/98 (27%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L AFSQ+GQV +IMDK + R KG+ YVTF
Sbjct: 37 LTQAFSQYGQV---------------------------LKVDVIMDKIRCRPKGFAYVTF 69
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDA 99
S++EEA+KAL ++N +L+DGRV+ +D + ++ D
Sbjct: 70 SSKEEAEKALLELNAQLVDGRVVILDTTKAAKHNPPDT 107
>gi|225464267|ref|XP_002271224.1| PREDICTED: cold-inducible RNA-binding protein [Vitis vinifera]
gi|296088019|emb|CBI35302.3| unnamed protein product [Vitis vinifera]
Length = 170
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 39/53 (73%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
L ++MDK NR +G+ ++ +STEEE++KA+ M+GK LDGRVIFV+ +P
Sbjct: 105 LVEVNLVMDKIANRPRGFAFLRYSTEEESEKAIEGMHGKFLDGRVIFVEVAKP 157
>gi|388505224|gb|AFK40678.1| unknown [Lotus japonicus]
Length = 187
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 39/53 (73%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
L ++MDK NR +G+ ++ ++TEEE+QKA+ M+GK LDGRVIFV+ +P
Sbjct: 120 LVDVNLVMDKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKP 172
>gi|351724829|ref|NP_001237071.1| uncharacterized protein LOC100306326 [Glycine max]
gi|255628209|gb|ACU14449.1| unknown [Glycine max]
Length = 139
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 46/90 (51%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L +AFS FGQ+ E A +I+D+ RSKG+ +VT+
Sbjct: 49 LKEAFSSFGQLVE---------------------------AKVIIDRASGRSKGFAFVTY 81
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+T EEA+KA MN K LDG VIFVD +P
Sbjct: 82 TTIEEAEKAREGMNAKFLDGWVIFVDPAKP 111
>gi|351725889|ref|NP_001237108.1| uncharacterized protein LOC100305561 [Glycine max]
gi|255625921|gb|ACU13305.1| unknown [Glycine max]
Length = 180
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 39/53 (73%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
L ++MD+ NR +G+ ++ ++TEEE+QKA+ M+GK LDGRVIFV+ +P
Sbjct: 114 LVEVKLVMDRIANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKP 166
>gi|242073000|ref|XP_002446436.1| hypothetical protein SORBIDRAFT_06g016070 [Sorghum bicolor]
gi|241937619|gb|EES10764.1| hypothetical protein SORBIDRAFT_06g016070 [Sorghum bicolor]
Length = 135
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 28/103 (27%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
LA+AFS++GQV E AT++ DK + KG+G+V F
Sbjct: 51 LAEAFSRYGQVIE---------------------------ATVVRDKVTDIPKGFGFVKF 83
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDA-PLAR 103
++ EEA A +MNGK L+GRVI+VD + TDA P+AR
Sbjct: 84 ASPEEANNAREEMNGKALNGRVIYVDIAKAKPDRATDALPIAR 126
>gi|449525960|ref|XP_004169984.1| PREDICTED: uncharacterized LOC101208465 [Cucumis sativus]
Length = 394
Score = 62.4 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/58 (53%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS-RRY 95
L IIMDK RSKGY +V ++TEE A AL +MNGK+++G +I VD +PS RRY
Sbjct: 332 LVEVKIIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDIAKPSPRRY 389
>gi|449446458|ref|XP_004140988.1| PREDICTED: uncharacterized protein LOC101208465 [Cucumis sativus]
Length = 394
Score = 62.0 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/58 (53%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS-RRY 95
L IIMDK RSKGY +V ++TEE A AL +MNGK+++G +I VD +PS RRY
Sbjct: 332 LVEVKIIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDIAKPSPRRY 389
>gi|147867424|emb|CAN83272.1| hypothetical protein VITISV_001132 [Vitis vinifera]
Length = 408
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS-RRYNT 97
L IIMDK RSKGY ++ +STEE A AL +MNGK+++G +I VD +P+ ++Y+
Sbjct: 342 LVEVKIIMDKISKRSKGYAFIEYSTEEAASAALKEMNGKIINGWMIVVDVAKPTPQKYSR 401
Query: 98 DAP 100
P
Sbjct: 402 SRP 404
>gi|388519245|gb|AFK47684.1| unknown [Lotus japonicus]
Length = 138
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
L A +I D+ RSKG+G+V++++ EEA+KA MN K LDG VIFVD +P
Sbjct: 57 LIEAKVITDRASGRSKGFGFVSYASIEEAEKAGKGMNAKFLDGWVIFVDPAKP----REP 112
Query: 99 APLARQSAQSPEEN 112
P + +Q P E
Sbjct: 113 RPPMQSESQQPSET 126
>gi|297826049|ref|XP_002880907.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297326746|gb|EFH57166.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 116
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 48/98 (48%), Gaps = 27/98 (27%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L AFSQ+GQV +IMDK + R KG YVTF
Sbjct: 37 LTQAFSQYGQV---------------------------LRVDVIMDKIRCRPKGIAYVTF 69
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDA 99
S++EEA KAL ++NG+L+DGRV+ +D + + D
Sbjct: 70 SSKEEAGKALLELNGRLVDGRVVILDITKAGKHNPPDT 107
>gi|356505124|ref|XP_003521342.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Glycine max]
Length = 139
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 45/90 (50%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L +AFS FGQ+ E A +I D+ RSKG+ +VT+
Sbjct: 49 LKEAFSSFGQLVE---------------------------AKVITDRASGRSKGFAFVTY 81
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+T EEA++A MN K LDG VIFVD +P
Sbjct: 82 TTIEEAERAREGMNAKFLDGWVIFVDPAKP 111
>gi|224120444|ref|XP_002318331.1| predicted protein [Populus trichocarpa]
gi|222859004|gb|EEE96551.1| predicted protein [Populus trichocarpa]
Length = 181
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 37/53 (69%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
L ++MDK R +G+ ++ + TEEEAQKA+ M+GK LDGRVIFV+ +P
Sbjct: 116 LVDVNLVMDKVAKRPRGFAFLRYETEEEAQKAIEGMHGKFLDGRVIFVEVAKP 168
>gi|194699346|gb|ACF83757.1| unknown [Zea mays]
gi|414587318|tpg|DAA37889.1| TPA: glycine-rich RNA-binding protein 2 [Zea mays]
Length = 135
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 54/103 (52%), Gaps = 28/103 (27%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
LA+AFS++GQV E AT++ DK + KG+G+V F
Sbjct: 51 LAEAFSRYGQVIE---------------------------ATVVRDKVTDVPKGFGFVKF 83
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDA-PLAR 103
++ EEA A +MNGK L+GRVI+VD + + DA P+AR
Sbjct: 84 ASPEEANNAREEMNGKALNGRVIYVDIAKARQDRAADALPIAR 126
>gi|226510389|ref|NP_001150093.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195636652|gb|ACG37794.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 135
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 54/103 (52%), Gaps = 28/103 (27%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
LA+AFS++GQV E AT++ DK + KG+G+V F
Sbjct: 51 LAEAFSRYGQVIE---------------------------ATVVRDKVTDVPKGFGFVKF 83
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDA-PLAR 103
++ EEA A +MNGK L+GRVI+VD + + DA P+AR
Sbjct: 84 ASPEEANNAREEMNGKALNGRVIYVDIAKARQDRAADALPIAR 126
>gi|242036137|ref|XP_002465463.1| hypothetical protein SORBIDRAFT_01g039290 [Sorghum bicolor]
gi|241919317|gb|EER92461.1| hypothetical protein SORBIDRAFT_01g039290 [Sorghum bicolor]
Length = 169
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 11/74 (14%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
+ A ++ D+ RSKG+G+V ++T EEA+KA +MN K LDG VIFVD +P
Sbjct: 89 ILEAKVVTDRVSGRSKGFGFVRYATIEEAEKARQEMNAKFLDGWVIFVDPAKP------- 141
Query: 99 APLARQSAQSPEEN 112
RQ +PE++
Sbjct: 142 ----RQPKPAPEQD 151
>gi|225464121|ref|XP_002264164.1| PREDICTED: uncharacterized protein LOC100265361 [Vitis vinifera]
Length = 409
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS-RRYNT 97
L IIMDK RSKGY ++ ++TEE A AL +MNGK+++G +I VD +P+ ++Y+
Sbjct: 343 LVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKPTPQKYSR 402
Query: 98 DAP 100
P
Sbjct: 403 SRP 405
>gi|297827259|ref|XP_002881512.1| hypothetical protein ARALYDRAFT_902894 [Arabidopsis lyrata subsp.
lyrata]
gi|297327351|gb|EFH57771.1| hypothetical protein ARALYDRAFT_902894 [Arabidopsis lyrata subsp.
lyrata]
Length = 142
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 27/86 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAF+ FGQ+ + A +I D+ RSKG+G+VT+
Sbjct: 50 LQDAFASFGQLVD---------------------------ARVITDRETGRSKGFGFVTY 82
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD 87
+T E+A+KA A+MN K LDG VIFVD
Sbjct: 83 ATIEDAEKAKAEMNAKFLDGWVIFVD 108
>gi|15224298|ref|NP_181287.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|20197470|gb|AAM15089.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|21536972|gb|AAM61313.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|114050677|gb|ABI49488.1| At2g37510 [Arabidopsis thaliana]
gi|330254316|gb|AEC09410.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 142
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 27/86 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAF+ FGQ+ + A +I D+ RSKG+G+VT+
Sbjct: 50 LQDAFASFGQLVD---------------------------ARVITDRDSGRSKGFGFVTY 82
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD 87
+T E+A+KA A+MN K LDG VIFVD
Sbjct: 83 ATIEDAEKAKAEMNAKFLDGWVIFVD 108
>gi|296087958|emb|CBI35241.3| unnamed protein product [Vitis vinifera]
Length = 315
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS-RRYNT 97
L IIMDK RSKGY ++ ++TEE A AL +MNGK+++G +I VD +P+ ++Y+
Sbjct: 249 LVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKPTPQKYSR 308
Query: 98 DAP 100
P
Sbjct: 309 SRP 311
>gi|353241625|emb|CCA73428.1| related to NSR1-nuclear localization sequence binding protein
[Piriformospora indica DSM 11827]
Length = 657
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/50 (54%), Positives = 38/50 (76%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
A++ MD+ RSKG+GYV+FST E A+KA+A+MNGK +DGR + V+ P
Sbjct: 420 ASVQMDRQTGRSKGFGYVSFSTPEAAEKAIAEMNGKEIDGRAVNVNAATP 469
Score = 38.1 bits (87), Expect = 0.71, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 47 DKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
D+ + KG+GYV F++ E A+ A +NGK + GR I +D +P
Sbjct: 524 DRETGQMKGFGYVEFTSVENAKSAFNALNGKDIAGRNIRLDFSQP 568
>gi|406911424|gb|EKD51218.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 125
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
+ +A +I DK RSKG+G+V + +EEAQKA+ D+N K +DGR I V+ RP + + D
Sbjct: 29 VVSAQVIQDKFNGRSKGFGFVEMANDEEAQKAIDDLNNKEIDGRKIIVNEARPMEKRDGD 88
>gi|225439737|ref|XP_002274178.1| PREDICTED: glycine-rich RNA-binding protein 2 [Vitis vinifera]
gi|297741476|emb|CBI32608.3| unnamed protein product [Vitis vinifera]
Length = 140
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 35/49 (71%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
L A +I D+ RSKG+G+VT++T EEA+KA MN K LDG VIFVD
Sbjct: 60 LLEAKVITDRVSGRSKGFGFVTYTTLEEAEKAREGMNAKFLDGWVIFVD 108
>gi|226529880|ref|NP_001150360.1| RNA binding protein [Zea mays]
gi|195638638|gb|ACG38787.1| RNA binding protein [Zea mays]
gi|414866145|tpg|DAA44702.1| TPA: RNA binding protein [Zea mays]
Length = 166
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 37/53 (69%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
L A ++ D+ RSKG+G+V ++T EEA++A +MN K LDG VIFVD +P
Sbjct: 86 LLEAKVVTDRVSGRSKGFGFVRYATIEEAERARQEMNAKFLDGWVIFVDPAKP 138
>gi|255581040|ref|XP_002531336.1| RNA binding protein, putative [Ricinus communis]
gi|223529058|gb|EEF31043.1| RNA binding protein, putative [Ricinus communis]
Length = 144
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 36/49 (73%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
L A +I+D+ RSKG+G++T++T EEA+KA MN K LDG VIFVD
Sbjct: 62 LVDAKVIIDRASGRSKGFGFITYATIEEAEKAREGMNAKFLDGWVIFVD 110
>gi|125543335|gb|EAY89474.1| hypothetical protein OsI_11005 [Oryza sativa Indica Group]
Length = 173
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
L A +I D+ RSKG+G+V ++T EEA+ A +MN K LDG VIFVD +P ++
Sbjct: 93 LLEAKVITDRISGRSKGFGFVRYATLEEAENARQEMNAKFLDGWVIFVDPAKPRQQKPAP 152
Query: 99 AP 100
P
Sbjct: 153 RP 154
>gi|115452257|ref|NP_001049729.1| Os03g0278800 [Oryza sativa Japonica Group]
gi|108707493|gb|ABF95288.1| RNA-binding protein, putative, expressed [Oryza sativa Japonica
Group]
gi|113548200|dbj|BAF11643.1| Os03g0278800 [Oryza sativa Japonica Group]
gi|125543333|gb|EAY89472.1| hypothetical protein OsI_11004 [Oryza sativa Indica Group]
gi|125585797|gb|EAZ26461.1| hypothetical protein OsJ_10350 [Oryza sativa Japonica Group]
Length = 173
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
L A +I D+ RSKG+G+V ++T EEA+ A +MN K LDG VIFVD +P ++
Sbjct: 93 LLEAKVITDRISGRSKGFGFVRYATLEEAENARQEMNAKFLDGWVIFVDPAKPRQQKPAP 152
Query: 99 AP 100
P
Sbjct: 153 RP 154
>gi|357454123|ref|XP_003597342.1| Cold-inducible RNA-binding protein [Medicago truncatula]
gi|355486390|gb|AES67593.1| Cold-inducible RNA-binding protein [Medicago truncatula]
Length = 142
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 40/53 (75%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
L AT+I D+ R KG+G+V++ +E EA+KA +NG+++DGR+IFV++ +P
Sbjct: 86 LTEATLITDQNTQRPKGFGFVSYKSEIEAEKARKALNGRIVDGRLIFVEHAKP 138
>gi|357454121|ref|XP_003597341.1| Cold-inducible RNA-binding protein [Medicago truncatula]
gi|355486389|gb|AES67592.1| Cold-inducible RNA-binding protein [Medicago truncatula]
gi|388509994|gb|AFK43063.1| unknown [Medicago truncatula]
Length = 89
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 40/53 (75%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
L AT+I D+ R KG+G+V++ +E EA+KA +NG+++DGR+IFV++ +P
Sbjct: 33 LTEATLITDQNTQRPKGFGFVSYKSEIEAEKARKALNGRIVDGRLIFVEHAKP 85
>gi|15219486|ref|NP_177494.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|11120799|gb|AAG30979.1|AC012396_15 RNA-binding glycine-rich protein, putative [Arabidopsis thaliana]
gi|62867629|gb|AAY17418.1| At1g73530 [Arabidopsis thaliana]
gi|114050615|gb|ABI49457.1| At1g73530 [Arabidopsis thaliana]
gi|332197351|gb|AEE35472.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 181
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 36/52 (69%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 90
L ++MDK NR KG+ ++ + TEEEA KA+ M+GK LDGRVIFV+ +
Sbjct: 103 LIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAK 154
>gi|224110196|ref|XP_002315444.1| predicted protein [Populus trichocarpa]
gi|222864484|gb|EEF01615.1| predicted protein [Populus trichocarpa]
Length = 311
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS-RRYNT 97
L IIMDK RSKGY +V ++TEE A AL +MNGK+++G +I VD + + RY+
Sbjct: 245 LVEVKIIMDKISKRSKGYAFVKYTTEEAASSALKEMNGKIINGWMIVVDVAKSNPPRYSR 304
Query: 98 DAPLARQSA 106
P RQ+A
Sbjct: 305 GRP--RQAA 311
>gi|20197660|gb|AAM15185.1| putative RNA-binding glycine rich protein (RGP-2) [Arabidopsis
thaliana]
gi|20197669|gb|AAD42009.2| putative RNA-binding glycine rich protein (RGP-2) [Arabidopsis
thaliana]
gi|21553954|gb|AAM63035.1| putative RNA-binding glycine rich protein RGP-2 [Arabidopsis
thaliana]
Length = 63
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 39/53 (73%)
Query: 46 MDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
MDK + R KG+ YVTFS++EEA+KAL ++N +L+DGRV+ +D + ++ D
Sbjct: 1 MDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLVDGRVVILDTTKAAKHNPPD 53
>gi|297842099|ref|XP_002888931.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297334772|gb|EFH65190.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 181
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 36/52 (69%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 90
L ++MDK NR +G+ ++ + TEEEA KA+ M+GK LDGRVIFV+ +
Sbjct: 103 LIHMNLVMDKVANRPRGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAK 154
>gi|256423338|ref|YP_003123991.1| RNP-1 like RNA-binding protein [Chitinophaga pinensis DSM 2588]
gi|256038246|gb|ACU61790.1| RNP-1 like RNA-binding protein [Chitinophaga pinensis DSM 2588]
Length = 92
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 5/62 (8%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR-----PSRRY 95
+A +I+DK NRS+G+G+VT + EA+KA+ +MNG L+DG+ I R P R Y
Sbjct: 29 SANVIIDKFTNRSRGFGFVTMPNDTEAEKAIQEMNGSLIDGKTIAASQARPREEKPGRSY 88
Query: 96 NT 97
N
Sbjct: 89 NN 90
>gi|357152879|ref|XP_003576265.1| PREDICTED: glycine-rich RNA-binding protein blt801-like
[Brachypodium distachyon]
Length = 165
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 36/55 (65%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
+ A II D+ RS+G+G+VTF+TEE Q A+ MNGK LDGR I V+ + R
Sbjct: 30 ILDAKIIQDRETGRSRGFGFVTFATEESMQAAIEGMNGKELDGRSITVNQAQSRR 84
>gi|356576299|ref|XP_003556270.1| PREDICTED: uncharacterized protein LOC100791652 [Glycine max]
Length = 386
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
L +IMDK RSKGY +V ++TEE A AL +MNGK+++G +I VD +P+
Sbjct: 323 LVEVKVIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDVAKPN 376
>gi|15238546|ref|NP_200794.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332009860|gb|AED97243.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 157
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 39 LFA--ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 90
LFA A +I D+ R KG+G++TF +E++AQKAL +NGK+++GR+IFV+ +
Sbjct: 90 LFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVETAK 143
>gi|326931817|ref|XP_003212020.1| PREDICTED: embryonic polyadenylate-binding protein-like [Meleagris
gallopavo]
Length = 633
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 40 FAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDA 99
+ ++MD RSKG+G+V F EEAQKA+ADMNGK ++GR+++V R +R +
Sbjct: 218 LSVKVMMDN-TGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVG--RAQKRLERQS 274
Query: 100 PLARQSAQSPEE 111
L R+ Q +E
Sbjct: 275 ELKRKFEQMKQE 286
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 88
+ + ++ D+ N S+G+G+V F T+E A +A+ MNG LL+ R +FV +
Sbjct: 125 ILSCKVVCDE--NGSRGHGFVHFETQEAATRAIETMNGMLLNDRKVFVGH 172
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 32/42 (76%), Gaps = 1/42 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +G + SKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 325 VMTEGGH-SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
>gi|326490373|dbj|BAJ84850.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 299
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 27/85 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAFS +GQVTE A +IMD+ RS+G+G+VTF
Sbjct: 47 LGDAFSNYGQVTE---------------------------AKVIMDRESGRSRGFGFVTF 79
Query: 62 STEEEAQKALADMNGKLLDGRVIFV 86
++ EEA A+ M+GK L GR++ V
Sbjct: 80 TSSEEAGAAITGMDGKDLQGRIVRV 104
>gi|118100597|ref|XP_417367.2| PREDICTED: embryonic polyadenylate-binding protein-like [Gallus
gallus]
Length = 632
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 40 FAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDA 99
+ ++MD RSKG+G+V F EEAQKA+ADMNGK ++GR+++V R +R +
Sbjct: 218 LSVKVMMDH-TGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVG--RAQKRLERQS 274
Query: 100 PLARQSAQSPEE 111
L R+ Q +E
Sbjct: 275 ELKRKFEQMKQE 286
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 88
+ + ++ D+ N S+G+G+V F T+E A +A+ MNG LL+ R +FV +
Sbjct: 125 ILSCKVVCDE--NGSRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGH 172
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 32/42 (76%), Gaps = 1/42 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +G + SKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 325 VMTEGGH-SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
>gi|449448655|ref|XP_004142081.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 146
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 35/49 (71%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
L A ++ D+ RSKG+ +VT+ST +EA+KA +MN K LDG VIFVD
Sbjct: 66 LVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVD 114
>gi|297819134|ref|XP_002877450.1| hypothetical protein ARALYDRAFT_905782 [Arabidopsis lyrata subsp.
lyrata]
gi|297323288|gb|EFH53709.1| hypothetical protein ARALYDRAFT_905782 [Arabidopsis lyrata subsp.
lyrata]
Length = 102
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 40/57 (70%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
A +I D R KG+G++TF +E++A+KAL ++GK+++GR+IFV+ + S TD
Sbjct: 36 ARLIRDSETQRPKGFGFITFESEDDARKALKSLDGKIVEGRLIFVEVAKSSEEVTTD 92
>gi|9757907|dbj|BAB08354.1| unnamed protein product [Arabidopsis thaliana]
Length = 112
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 37/47 (78%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 90
+I D+ R KG+G++TF +E++AQKAL +NGK+++GR+IFV+ +
Sbjct: 52 LIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVETAK 98
>gi|294464377|gb|ADE77701.1| unknown [Picea sitchensis]
Length = 299
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
L A I+ D+ RS+G+G++TFST+ EA+ A+A +NGK L+GR + VD SR
Sbjct: 242 LLDAKIVFDRETGRSRGFGFITFSTQSEAEAAVASLNGKELEGRAMRVDLALSSR 296
>gi|224078006|ref|XP_002190593.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Taeniopygia guttata]
Length = 629
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 40 FAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDA 99
+ ++MD RSKG+G+V F EEAQKA+ADMNGK ++GR+++V R +R +
Sbjct: 218 LSVKVMMDN-NGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRLLYVG--RAQKRLERQS 274
Query: 100 PLARQSAQSPEE 111
L R+ Q +E
Sbjct: 275 ELKRKFEQMKQE 286
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 32/42 (76%), Gaps = 1/42 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 325 VMTEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 88
+ + ++ D+ N S+GYG+V F T E A +A+ MNG LL+ R +FV +
Sbjct: 125 ILSCKVVCDE--NGSRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGH 172
>gi|443919574|gb|ELU39701.1| RNA recognition motif domain-containing protein [Rhizoctonia solani
AG-1 IA]
Length = 716
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 37/53 (69%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ AA + MD+ +S+G+ YV FS+ EAQKA+ +MNGK +DGR + VD +P
Sbjct: 136 VVAARVQMDRNSGKSRGFAYVEFSSPAEAQKAVEEMNGKQIDGREVNVDISQP 188
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 47 DKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
D+ + KG+GYV F +E A KA M GK LDGR + +D +P
Sbjct: 243 DQESGKPKGFGYVEFGDQEGATKAYEAMKGKDLDGRTLRLDYSQP 287
>gi|53804863|ref|YP_113486.1| RNA-binding protein [Methylococcus capsulatus str. Bath]
gi|53758624|gb|AAU92915.1| RNA-binding protein [Methylococcus capsulatus str. Bath]
Length = 95
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 37/51 (72%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+A ++MD+ RS+G+G+V +++EAQ A+A +NGK +DGR + V+ RP
Sbjct: 31 SAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAGLNGKEMDGRNLMVNEARP 81
>gi|449516497|ref|XP_004165283.1| PREDICTED: glycine-rich RNA-binding protein 2-like, partial
[Cucumis sativus]
Length = 100
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 34/46 (73%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
A ++ D+ RSKG+ +VT+ST +EA+KA +MN K LDG VIFVD
Sbjct: 23 AKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVD 68
>gi|59802519|gb|AAX07503.1| unknown [Gemmata sp. Wa1-1]
Length = 122
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 39/55 (70%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
+ +A +IMD+ RSKG+G+V T++EAQ A+ M+G++++GR + V+ RP +
Sbjct: 66 VVSAQVIMDRDTGRSKGFGFVEMGTDQEAQAAITGMHGQVIEGRPLTVNEARPKK 120
>gi|258568356|ref|XP_002584922.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237906368|gb|EEP80769.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 745
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 13/83 (15%)
Query: 12 VTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKAL 71
TE L ++ +S +P+ + AT + D + KGYG+VTF+ E+AQ+AL
Sbjct: 58 TTESLTEYFSQS---YPIKH----------ATAVADPQTKQCKGYGFVTFTDVEDAQRAL 104
Query: 72 ADMNGKLLDGRVIFVDNVRPSRR 94
++NG + DGR I ++ P RR
Sbjct: 105 EELNGSIFDGRKIVIEVAEPRRR 127
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 51 NRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
R G+G++ ++ A+KA+ +NGK LDGR + VD
Sbjct: 196 TRHSGFGFIVMRGKKNAEKAIEGVNGKELDGRTLAVD 232
>gi|333379577|ref|ZP_08471298.1| hypothetical protein HMPREF9456_02893 [Dysgonomonas mossii DSM
22836]
gi|332884970|gb|EGK05223.1| hypothetical protein HMPREF9456_02893 [Dysgonomonas mossii DSM
22836]
Length = 99
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 29 LHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 88
L+ F + +A +IMD+ +RSKGYG+V E+A KA++ +NG DGR I V
Sbjct: 17 LNTFFKEYGVINSAKVIMDRSTSRSKGYGFVEMDNNEDANKAISKLNGVEYDGRTISVSE 76
Query: 89 VRPSRRYNTDA 99
RP + N ++
Sbjct: 77 ARPRQERNNNS 87
>gi|326493798|dbj|BAJ85361.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 175
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
+ A II D+ RS+G+G+VTF +EE ++A+ +MNGK LDGR I V+ + R
Sbjct: 32 ILDAKIINDRETGRSRGFGFVTFGSEESMRQAIEEMNGKELDGRSITVNEAQSRR 86
>gi|297830792|ref|XP_002883278.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297329118|gb|EFH59537.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 376
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSRR 94
L IIMDK RSKGY ++ ++TEE A AL +MNGK+++G +I VD +P R+
Sbjct: 310 LVEVKIIMDKISKRSKGYAFLEYTTEEAASAALKEMNGKIINGWMIVVDVAKTKPFRQ 367
>gi|544421|sp|Q99069.1|GRP1_SORBI RecName: Full=Glycine-rich RNA-binding protein 1
gi|21623|emb|CAA40863.1| glycine-rich RNA-binding protein [Sorghum bicolor]
Length = 142
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 28 PLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
LH + + + II+D+ RS+G+G+VTFSTEE + A+ MNGK LDGR I V+
Sbjct: 2 SLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVN 61
>gi|357442985|ref|XP_003591770.1| RNA-binding protein [Medicago truncatula]
gi|355480818|gb|AES62021.1| RNA-binding protein [Medicago truncatula]
Length = 284
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS-RRYNT 97
L +I+DK RSKGY ++ ++TEE A AL +MNGK+++G +I VD + + RYN
Sbjct: 218 LVEVKVIIDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPPRYNK 277
Query: 98 DAPLARQSA 106
AR SA
Sbjct: 278 GH--ARPSA 284
>gi|255568010|ref|XP_002524982.1| RNA binding protein, putative [Ricinus communis]
gi|223535726|gb|EEF37389.1| RNA binding protein, putative [Ricinus communis]
Length = 371
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
L IIMDK RSKGY ++ ++TEE A AL +MNGK+++G +I VD + S
Sbjct: 305 LVEVKIIMDKISKRSKGYAFIEYTTEEAANAALKEMNGKIINGWMIVVDVAKTS 358
>gi|395330588|gb|EJF62971.1| RNA-binding domain-containing protein [Dichomitus squalens LYAD-421
SS1]
Length = 351
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 31 YFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 90
+F S + +A +IM +G NRS GYG+V+F+T E AQKA+ ++ K LDGR + V+ +
Sbjct: 48 FFAPVQSDVLSAQVIM-RGGNRSAGYGFVSFTTAEAAQKAVELLDKKELDGRTVIVEVAK 106
Query: 91 PS 92
P+
Sbjct: 107 PA 108
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 49 GKNR-SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
GK R SKGYG+V EE+ +KA+ + GK + GR I V
Sbjct: 278 GKPRKSKGYGFVDVGDEEQQKKAIEALQGKEVGGRAIAV 316
>gi|392592716|gb|EIW82042.1| RNA-binding domain-containing protein [Coniophora puteana
RWD-64-598 SS2]
Length = 589
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
+ +AT+ MD+ RS+G+GYV FST E +KA+ ++NGK +DGR + VD P +
Sbjct: 359 VVSATVQMDRSTGRSRGFGYVHFSTSEAVEKAI-ELNGKEIDGRAVNVDKSNPPNK 413
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%)
Query: 47 DKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
D+ R KG+GYV FS E A+KA A M G LDGR + +D +P
Sbjct: 467 DRESGRPKGFGYVEFSDVETAKKAHAAMQGVELDGRSVRLDFSQP 511
>gi|255584770|ref|XP_002533103.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
gi|223527094|gb|EEF29275.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
Length = 78
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 37 SFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+F+ A +I D +S+GYG+V F++E A KAL +MNG+LLDGR I V
Sbjct: 23 NFVLAVKVICDHVNGKSEGYGFVKFTSESAASKALKEMNGQLLDGRNIRV 72
>gi|375108277|ref|ZP_09754538.1| RRM domain-containing RNA-binding protein [Burkholderiales
bacterium JOSHI_001]
gi|374669008|gb|EHR73793.1| RRM domain-containing RNA-binding protein [Burkholderiales
bacterium JOSHI_001]
Length = 167
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L AFSQFG VT +A ++MD+ RSKG+G+V
Sbjct: 19 LQAAFSQFGTVT---------------------------SAKVMMDRETGRSKGFGFVEM 51
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
T EAQ A+ MNG+ L+GR + V+ RP
Sbjct: 52 GTGAEAQAAINGMNGQPLEGRAVVVNEARP 81
>gi|242084350|ref|XP_002442600.1| hypothetical protein SORBIDRAFT_08g022740 [Sorghum bicolor]
gi|241943293|gb|EES16438.1| hypothetical protein SORBIDRAFT_08g022740 [Sorghum bicolor]
Length = 165
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 28 PLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
LH + + + II+D+ RS+G+G+VTFSTEE + A+ MNGK LDGR I V+
Sbjct: 23 SLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVN 82
Query: 88 NVRP 91
+
Sbjct: 83 EAQS 86
>gi|238011394|gb|ACR36732.1| unknown [Zea mays]
Length = 149
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 28 PLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
LH + + + II+D+ RS+G+G+VTFSTEE + A+ MNGK LDGR I V+
Sbjct: 23 SLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRNAIEGMNGKELDGRNITVN 82
>gi|219888685|gb|ACL54717.1| unknown [Zea mays]
gi|414869098|tpg|DAA47655.1| TPA: glycine-rich protein1 [Zea mays]
Length = 144
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 28 PLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
LH + + + II+D+ RS+G+G+VTFSTEE + A+ MNGK LDGR I V+
Sbjct: 23 SLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRNAIEGMNGKELDGRNITVN 82
>gi|195612516|gb|ACG28088.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|414869096|tpg|DAA47653.1| TPA: glycine-rich protein1 isoform 1 [Zea mays]
gi|414869097|tpg|DAA47654.1| TPA: glycine-rich protein1 isoform 2 [Zea mays]
Length = 155
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 28 PLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
LH + + + II+D+ RS+G+G+VTFSTEE + A+ MNGK LDGR I V+
Sbjct: 23 SLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRNAIEGMNGKELDGRNITVN 82
>gi|195609654|gb|ACG26657.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195612080|gb|ACG27870.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195612572|gb|ACG28116.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 156
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 28 PLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
LH + + + II+D+ RS+G+G+VTFSTEE + A+ MNGK LDGR I V+
Sbjct: 23 SLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRNAIEGMNGKELDGRNITVN 82
>gi|59802525|gb|AAX07506.1| unknown [Gemmata sp. Wa1-1]
Length = 163
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 37/50 (74%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
A +IMD+ RSKG+G+V ++++EAQ A+A MNG++ +GR + V+ +P
Sbjct: 93 AQVIMDRDTGRSKGFGFVEMNSDQEAQAAIAGMNGQMSEGRALTVNEAKP 142
>gi|255584774|ref|XP_002533105.1| cold-inducible RNA binding protein, putative [Ricinus communis]
gi|223527096|gb|EEF29277.1| cold-inducible RNA binding protein, putative [Ricinus communis]
Length = 94
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 36/46 (78%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
A +++D + KG+G+VTF +E +AQKAL MNG+++DGR++FV+
Sbjct: 36 ARLVLDPRTQKPKGFGFVTFDSESQAQKALKAMNGRIVDGRLLFVE 81
>gi|375144786|ref|YP_005007227.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
gi|361058832|gb|AEV97823.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
Length = 102
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
LA FSQ+GQV+ +A +IMD+ RS+G+G+V
Sbjct: 17 LAKLFSQYGQVS---------------------------SAKVIMDRETGRSRGFGFVEM 49
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
S++EEA+KA+ ++ GK ++GR + V RP
Sbjct: 50 SSDEEARKAIKELEGKPVEGRSLSVSEARP 79
>gi|223942615|gb|ACN25391.1| unknown [Zea mays]
Length = 120
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 28 PLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
LH + + + II+D+ RS+G+G+VTFSTEE + A+ MNGK LDGR I V+
Sbjct: 23 SLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRNAIEGMNGKELDGRNITVN 82
Query: 88 NVRP 91
+
Sbjct: 83 EAQS 86
>gi|2196542|gb|AAB61213.1| glycine-rich protein [Oryza sativa Japonica Group]
Length = 197
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 9/95 (9%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHY-------FLISDSFL--FAATIIMDKGKNR 52
L AFS +G++ E V + S F + + +L + +A II D+ R
Sbjct: 24 LEAAFSTYGEILESKVRWIPSSLCFFLMRFGGGVRQIWLRKSDYGGGYAVQIINDRETGR 83
Query: 53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
S+G+G+VTFS E+ + A+ MNGK LDGR I V+
Sbjct: 84 SRGFGFVTFSNEQAMRDAIQGMNGKELDGRNITVN 118
>gi|18402803|ref|NP_566672.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|20466724|gb|AAM20679.1| unknown protein [Arabidopsis thaliana]
gi|21536799|gb|AAM61131.1| unknown [Arabidopsis thaliana]
gi|25084257|gb|AAN72206.1| unknown protein [Arabidopsis thaliana]
gi|332642921|gb|AEE76442.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 374
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSRR 94
L IIMDK RSKGY ++ ++TEE A AL +MNGK+++G +I VD +P R+
Sbjct: 308 LVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKIINGWMIVVDVAKTKPFRQ 365
>gi|974605|gb|AAA75104.1| single-stranded nucleic acid binding protein [Triticum aestivum]
Length = 167
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
+ A II D+ RS+G+G+VTF +EE ++A+ +MNGK LDGR I V+ + R
Sbjct: 32 ILDAKIINDRETGRSRGFGFVTFGSEESMRQAIEEMNGKELDGRNITVNEAQSRR 86
>gi|254572962|ref|XP_002493590.1| Nucleolar protein that binds nuclear localization sequences
[Komagataella pastoris GS115]
gi|238033389|emb|CAY71411.1| Nucleolar protein that binds nuclear localization sequences
[Komagataella pastoris GS115]
gi|328354581|emb|CCA40978.1| Nuclear localization sequence-binding protein [Komagataella
pastoris CBS 7435]
Length = 362
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 8/69 (11%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSRRYN 96
+ A ++M++ RS+GYGYV F + A+KAL +M GK +DGR I VD N +P+
Sbjct: 152 VVGARVMMERATGRSRGYGYVDFDNKASAEKALEEMQGKEIDGRPINVDMSNSKPA---- 207
Query: 97 TDAPLARQS 105
AP AR +
Sbjct: 208 --APAARNN 214
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 54 KGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
KG+GYV FS+ +EA AL +NG+ +D R I +D P
Sbjct: 270 KGFGYVQFSSVDEATGALEALNGEYVDNRPIRLDYSTP 307
>gi|297793541|ref|XP_002864655.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297310490|gb|EFH40914.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 95
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 42/63 (66%), Gaps = 5/63 (7%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
+ A +I D+ R KG+G++TF +E++AQ AL +NGK+++GR+IFV+ + +
Sbjct: 33 IIEARLIRDQQTQRPKGFGFITFESEDDAQNALKALNGKIVNGRLIFVEAAK-----EVE 87
Query: 99 APL 101
AP+
Sbjct: 88 API 90
>gi|296422065|ref|XP_002840583.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636802|emb|CAZ84774.1| unnamed protein product [Tuber melanosporum]
Length = 559
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ A ++ D+ RSKG+GYV ++T E A+KAL +M GK +DGR I VD
Sbjct: 328 IAAVRVVTDRESGRSKGFGYVEYTTNEAAKKALEEMKGKDIDGRTINVD 376
Score = 34.3 bits (77), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
I D + KG+ Y+ + + A+KA+ +MNG L+ GR I D
Sbjct: 433 IPTDPESGQPKGFCYIQYDRVDSARKAVEEMNGALVAGRAIRTD 476
>gi|728594|emb|CAA88558.1| glycine rich protein, RNA binding protein [Hordeum vulgare subsp.
vulgare]
Length = 173
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 37/55 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
+ A II D+ RS+G+G+VTF +EE ++A+ +MNGK LDGR + V+ + R
Sbjct: 32 ILDAKIINDRETGRSRGFGFVTFGSEESMRQAIEEMNGKELDGRQVTVNEAQSRR 86
>gi|223974749|gb|ACN31562.1| unknown [Zea mays]
Length = 326
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 36/52 (69%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 90
+ + II+D+ RS+G+G+VTFSTEE + A+ MNGK LDGR I V+ +
Sbjct: 34 VLESKIILDRETQRSRGFGFVTFSTEEAMRNAIEGMNGKELDGRNITVNEAQ 85
>gi|366987527|ref|XP_003673530.1| hypothetical protein NCAS_0A05890 [Naumovozyma castellii CBS 4309]
gi|342299393|emb|CCC67147.1| hypothetical protein NCAS_0A05890 [Naumovozyma castellii CBS 4309]
Length = 415
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 36/49 (73%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ +A +IM++G +RS+GYGYV F + A+KA+ +M GK +DGR I VD
Sbjct: 188 VVSARVIMERGTDRSRGYGYVDFEDKSYAEKAIKEMQGKEIDGREINVD 236
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 54 KGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
KG+GYV ++ E+A+KAL + G+ +D R + +D P
Sbjct: 303 KGFGYVQYTNVEDAKKALEGLQGEYIDNRPVRLDYSTP 340
>gi|326491331|dbj|BAK05765.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 262
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAFS++G+VTE A ++MDK RS+G+ +VTF
Sbjct: 59 LKDAFSKYGKVTE---------------------------AKVVMDKFSGRSRGFAFVTF 91
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
++ ++A+ DMNG L+GR I VD +P
Sbjct: 92 DEKKAMEEAIEDMNGLDLEGRAITVDKAQP 121
>gi|374376206|ref|ZP_09633864.1| RNP-1 like RNA-binding protein [Niabella soli DSM 19437]
gi|373233046|gb|EHP52841.1| RNP-1 like RNA-binding protein [Niabella soli DSM 19437]
Length = 110
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNT 97
+A I+ DK NRSKG+G+V +T+EEA+ A+ +NG +DGR I V+ RP N+
Sbjct: 29 SAKIVSDKFTNRSKGFGFVEMATDEEAKAAIEALNGTEVDGRNIVVNESRPKEGGNS 85
>gi|332525684|ref|ZP_08401833.1| RNA-binding region RNP-1 [Rubrivivax benzoatilyticus JA2]
gi|332109243|gb|EGJ10166.1| RNA-binding region RNP-1 [Rubrivivax benzoatilyticus JA2]
Length = 145
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L AF+QFG VT +A ++MD+ RSKG+G+V
Sbjct: 6 LQQAFAQFGTVT---------------------------SAKVMMDRETGRSKGFGFVEM 38
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
++ EAQ A+ MNG+ L+GR + V+ RP
Sbjct: 39 GSDAEAQAAINGMNGQSLEGRAVVVNEARP 68
>gi|168704267|ref|ZP_02736544.1| RNA-binding region RNP-1 [Gemmata obscuriglobus UQM 2246]
Length = 137
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 39/53 (73%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ +A +IMD+ RSKG+G+V +++EAQ A++ M+G++++GR + V+ RP
Sbjct: 29 VVSAQVIMDRDTGRSKGFGFVEMGSDQEAQAAISGMHGQVIEGRPLTVNEARP 81
>gi|383760540|ref|YP_005439526.1| RNP-1 like RNA-binding protein, Glycine-rich [Rubrivivax
gelatinosus IL144]
gi|381381210|dbj|BAL98027.1| RNP-1 like RNA-binding protein, Glycine-rich [Rubrivivax
gelatinosus IL144]
Length = 161
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L AF+QFG VT +A ++MD+ RSKG+G+V
Sbjct: 19 LQQAFAQFGTVT---------------------------SAKVMMDRETGRSKGFGFVEM 51
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
++ EAQ A+ MNG+ L+GR I V+ RP
Sbjct: 52 GSDAEAQAAINGMNGQPLEGRAIVVNEARP 81
>gi|223936242|ref|ZP_03628155.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
gi|223895104|gb|EEF61552.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
Length = 103
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 34/48 (70%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+IMDK R++G+G+VT +T E A+ A+AD+NGK GR + V+ RP
Sbjct: 34 LIMDKMTGRARGFGFVTMATAEGAEAAIADLNGKEWQGRALTVNEARP 81
>gi|406944721|gb|EKD76419.1| hypothetical protein ACD_43C00118G0001 [uncultured bacterium]
Length = 84
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
+ +A IIMDK RS+G+G+V ST EEAQ A+ +GK LDGR I V +P +
Sbjct: 29 VVSAKIIMDKMTGRSRGFGFVEMSTPEEAQAAIQMWDGKELDGRRIAVKEAQPREK 84
>gi|218195435|gb|EEC77862.1| hypothetical protein OsI_17125 [Oryza sativa Indica Group]
Length = 152
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 27/89 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L +AF +FGQ+TE ++M++ R +G+ ++++
Sbjct: 86 LRNAFERFGQLTE---------------------------VNLVMERVAKRPRGFAFLSY 118
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVR 90
++EEE++ A+ M GK LDGRVIFV+ R
Sbjct: 119 ASEEESKNAMEGMQGKFLDGRVIFVEVAR 147
>gi|242050818|ref|XP_002463153.1| hypothetical protein SORBIDRAFT_02g038590 [Sorghum bicolor]
gi|241926530|gb|EER99674.1| hypothetical protein SORBIDRAFT_02g038590 [Sorghum bicolor]
Length = 293
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%)
Query: 22 KSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81
S PL + S A II D+ RSKG+G++T+++ EEA A+ M+GK L G
Sbjct: 18 NSAPLLQPVRCMSSSKLFVGARIITDRESGRSKGFGFITYTSTEEASAAVTSMDGKELQG 77
Query: 82 RVIFVDNV 89
R I VD+
Sbjct: 78 RSIRVDHA 85
>gi|222629430|gb|EEE61562.1| hypothetical protein OsJ_15917 [Oryza sativa Japonica Group]
Length = 149
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 27/89 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L +AF +FGQ+TE ++M++ R +G+ ++++
Sbjct: 83 LRNAFERFGQLTE---------------------------VNLVMERVAKRPRGFAFLSY 115
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVR 90
++EEE++ A+ M GK LDGRVIFV+ R
Sbjct: 116 ASEEESKNAMEGMQGKFLDGRVIFVEVAR 144
>gi|241947949|ref|XP_002416697.1| pre-rRNA processing and ribosome biogenesis, nuclear localization
sequence binding, nucleolar protein, putative [Candida
dubliniensis CD36]
gi|223640035|emb|CAX44279.1| pre-rRNA processing and ribosome biogenesis, nuclear localization
sequence binding, nucleolar protein, putative [Candida
dubliniensis CD36]
Length = 423
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 35/49 (71%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ +A +IM++ +S+GYGYV F T+ A+KAL +M GK +DGR I +D
Sbjct: 222 VISARVIMERATGKSRGYGYVDFETKSAAEKALEEMQGKEIDGRPINLD 270
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 54 KGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNT 97
KG+GYV FS+ +EA+ AL +NG+ ++GR +D P NT
Sbjct: 339 KGFGYVQFSSVDEAKAALEALNGEYIEGRPCRLDFSTPRDNSNT 382
>gi|260943169|ref|XP_002615883.1| hypothetical protein CLUG_04765 [Clavispora lusitaniae ATCC 42720]
gi|238851173|gb|EEQ40637.1| hypothetical protein CLUG_04765 [Clavispora lusitaniae ATCC 42720]
Length = 385
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 29 LHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 88
LH F + L A ++ D +RS+GYG+VTF+ +A+ AL+ MNGK+L+GR I +
Sbjct: 152 LHKFFSAFESLKQAHVMWDMQTSRSRGYGFVTFANLADAETALSTMNGKVLNGRAIRCNW 211
Query: 89 VRPSRRYNTDAPLARQSAQ 107
++ + AP RQ+ Q
Sbjct: 212 ASHKQQNSRGAP--RQNNQ 228
>gi|403215569|emb|CCK70068.1| hypothetical protein KNAG_0D03220 [Kazachstania naganishii CBS
8797]
Length = 399
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 35/49 (71%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ +A +IM++G +RS+GYGYV F A+KAL +M GK +DGR I VD
Sbjct: 175 VVSARVIMERGTDRSRGYGYVDFEDISYAEKALKEMQGKEIDGRPINVD 223
>gi|124268989|ref|YP_001022993.1| RNA-binding region RNP-1 [Methylibium petroleiphilum PM1]
gi|124261764|gb|ABM96758.1| RNA-binding region RNP-1 [Methylibium petroleiphilum PM1]
Length = 162
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+A ++MD+ RSKG+G+V ++ EAQ A+ MNG+ L GR I V+ RP
Sbjct: 31 SAKVMMDRDTGRSKGFGFVEMGSDAEAQAAIEGMNGQSLSGRAIVVNEARP 81
>gi|226498016|ref|NP_001151732.1| RNA binding protein [Zea mays]
gi|195649405|gb|ACG44170.1| RNA binding protein [Zea mays]
Length = 147
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 27/86 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAF +FG +TE ++MD+ R +G+ ++++
Sbjct: 81 LRDAFEKFGDLTE---------------------------VCLVMDRVAKRPRGFAFLSY 113
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD 87
+ EEEA+ A+ M+GK LDGRVIFV+
Sbjct: 114 TGEEEARGAMEGMHGKFLDGRVIFVE 139
>gi|357126492|ref|XP_003564921.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Brachypodium distachyon]
Length = 156
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 40/56 (71%), Gaps = 2/56 (3%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPS 92
++ A +I D+ RS+G+G+V FS EE+A+KA + M+G+ LDGR + V+ N RP+
Sbjct: 63 VYEARVITDRETGRSRGFGFVEFSNEEDAKKAASSMDGQELDGRSVRVNFANERPA 118
>gi|333381249|ref|ZP_08472931.1| hypothetical protein HMPREF9455_01097 [Dysgonomonas gadei ATCC
BAA-286]
gi|332830219|gb|EGK02847.1| hypothetical protein HMPREF9455_01097 [Dysgonomonas gadei ATCC
BAA-286]
Length = 107
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 44/99 (44%), Gaps = 29/99 (29%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L D FS++G++T +A +IMDK RSKGYG+V
Sbjct: 17 LKDLFSEYGEIT---------------------------SAKVIMDKATGRSKGYGFVEL 49
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
+ QKA+ ++NG DGR I V RP R D P
Sbjct: 50 ADNAAGQKAIEELNGAEYDGRTISVSEARP--RTEGDRP 86
>gi|118474079|ref|YP_892397.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. fetus 82-40]
gi|424821065|ref|ZP_18246103.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. venerealis
NCTC 10354]
gi|118413305|gb|ABK81725.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. fetus 82-40]
gi|342327844|gb|EGU24328.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. venerealis
NCTC 10354]
Length = 82
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
A I+ DK NRSKG+G+V S++E+A+KA+ NGK + GR + V+ RP
Sbjct: 31 AKIVKDKETNRSKGFGFVEMSSDEQAKKAIEGTNGKEVGGRALRVNEARP 80
>gi|121596409|ref|YP_988305.1| RNP-1 like RNA-binding protein [Acidovorax sp. JS42]
gi|120608489|gb|ABM44229.1| RNP-1 like RNA-binding protein [Acidovorax sp. JS42]
Length = 149
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L AFSQFG VT +A ++M++ RSKG+G+V
Sbjct: 19 LEQAFSQFGAVT---------------------------SAKVMMERDTGRSKGFGFVEM 51
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
++ EAQ+A+ MNG+ L GR I V+ RP
Sbjct: 52 GSDAEAQEAINGMNGQSLGGRSIVVNEARP 81
>gi|15231311|ref|NP_190188.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|7630030|emb|CAB88326.1| RNA binding protein-like [Arabidopsis thaliana]
gi|46931202|gb|AAT06405.1| At3g46020 [Arabidopsis thaliana]
gi|50253530|gb|AAT71967.1| At3g46020 [Arabidopsis thaliana]
gi|332644581|gb|AEE78102.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 102
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 36/46 (78%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
A +I D R KG+G++TF +E++A+KAL ++GK++DGR+IFV+
Sbjct: 36 ARLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVE 81
>gi|326505708|dbj|BAJ95525.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 226
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAFS++G+VTE A ++MDK RS+G+ +VTF
Sbjct: 23 LKDAFSKYGKVTE---------------------------AKVVMDKFSGRSRGFAFVTF 55
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
++ ++A+ DMNG L+GR I VD +P
Sbjct: 56 DEKKAMEEAIEDMNGLDLEGRAITVDKAQP 85
>gi|406917506|gb|EKD56278.1| RNA-binding protein [uncultured bacterium]
Length = 89
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 43/77 (55%), Gaps = 9/77 (11%)
Query: 29 LHYFLISDSF--LFA-------ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 79
L Y SDS LFA A +I DK RSKG+G+VT + A+KA+ D +GK +
Sbjct: 12 LPYSATSDSLKELFAGSGEVVDAVVISDKFSGRSKGFGFVTMKDDAAAEKAIKDTDGKEV 71
Query: 80 DGRVIFVDNVRPSRRYN 96
DGR I V+ RP R N
Sbjct: 72 DGRNIKVNIARPMRENN 88
>gi|222112647|ref|YP_002554911.1| rnp-1 like RNA-binding protein [Acidovorax ebreus TPSY]
gi|221732091|gb|ACM34911.1| RNP-1 like RNA-binding protein [Acidovorax ebreus TPSY]
Length = 155
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L AFSQFG VT +A ++M++ RSKG+G+V
Sbjct: 19 LEQAFSQFGAVT---------------------------SAKVMMERDTGRSKGFGFVEM 51
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
++ EAQ+A+ MNG+ L GR I V+ RP
Sbjct: 52 GSDAEAQEAINGMNGQSLGGRSIVVNEARP 81
>gi|410080926|ref|XP_003958043.1| hypothetical protein KAFR_0F03120 [Kazachstania africana CBS 2517]
gi|372464630|emb|CCF58908.1| hypothetical protein KAFR_0F03120 [Kazachstania africana CBS 2517]
Length = 412
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 35/49 (71%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ A +I ++G +RS+GYGYV F +E A+KA+ +M+GK +DGR I D
Sbjct: 191 VIGARVIYERGTDRSRGYGYVDFENKEYAEKAVKEMHGKEIDGREINCD 239
>gi|328850756|gb|EGF99917.1| hypothetical protein MELLADRAFT_118186 [Melampsora larici-populina
98AG31]
Length = 667
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 35/49 (71%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ +A +I ++G RSKG+GYV F++ E+A+KA+ M G +DGR I VD
Sbjct: 427 VISARVITERGTERSKGFGYVDFASPEDARKAVEAMAGTEIDGRTINVD 475
>gi|162463657|ref|NP_001105707.1| glycine-rich protein1 [Zea mays]
gi|22293|emb|CAA43431.1| glycine-rich protein [Zea mays]
Length = 155
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 28 PLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
LH + + + II+D+ RS+G+G+VTFSTEE + + MNGK LDGR I V+
Sbjct: 23 SLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEERMRNRIEGMNGKELDGRNITVN 82
>gi|212550891|ref|YP_002309208.1| RNA-binding protein RbpA [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|212549129|dbj|BAG83797.1| putative RNA-binding protein RbpA [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 98
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+A +I+D+ +RSKGYG+V +EEA+KA+A++NG D R I V RP
Sbjct: 29 SARVIIDRQTSRSKGYGFVEMEDDEEARKAIAELNGSEFDERTISVSEARP 79
>gi|388494768|gb|AFK35450.1| unknown [Medicago truncatula]
Length = 176
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 33/46 (71%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
A IIMD+ RS+G+G++TF+T EEA AL M+ K LDGR + V+
Sbjct: 69 AKIIMDRDTGRSRGFGFITFATSEEASSALQAMDNKELDGRTVRVN 114
>gi|389633057|ref|XP_003714181.1| nuclear localization sequence binding protein [Magnaporthe oryzae
70-15]
gi|351646514|gb|EHA54374.1| nuclear localization sequence binding protein [Magnaporthe oryzae
70-15]
gi|440473688|gb|ELQ42470.1| 28 kDa ribonucleoprotein [Magnaporthe oryzae Y34]
gi|440486239|gb|ELQ66126.1| 28 kDa ribonucleoprotein [Magnaporthe oryzae P131]
Length = 486
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 33 LISDSFLFAATI-----IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
++++ F F T+ I D+ RSKG+GYV F+T EEA+KA + G +DGR I VD
Sbjct: 254 MLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKAHGEKQGAFIDGREIKVD 313
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 52 RSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSR 93
R KG+GYVTF++ E+A+ A +NG+ ++GR +D RP R
Sbjct: 381 RRKGFGYVTFNSVEDAKSAFEQLNGQSINGRNCRLDYSTPRPPR 424
>gi|168034588|ref|XP_001769794.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678903|gb|EDQ65356.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 400
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 39/67 (58%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLAR 103
+ MD+ N KGYGYV F +A+KALA M+G +DG V+ + RR T P+ R
Sbjct: 117 LAMDRTVNLPKGYGYVEFKRRGDAEKALAHMDGGQIDGNVVSAQFILVPRRKPTPPPVKR 176
Query: 104 QSAQSPE 110
Q + +P+
Sbjct: 177 QVSPAPK 183
>gi|156841314|ref|XP_001644031.1| hypothetical protein Kpol_1026p21 [Vanderwaltozyma polyspora DSM
70294]
gi|156114664|gb|EDO16173.1| hypothetical protein Kpol_1026p21 [Vanderwaltozyma polyspora DSM
70294]
Length = 437
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 36/49 (73%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ A +I ++G +RS+GYGYV FS++ A++A+ +M+GK +DGR I D
Sbjct: 204 VIGARVIYERGTDRSRGYGYVDFSSKSAAERAVKEMHGKQIDGREINCD 252
>gi|91786529|ref|YP_547481.1| RNA recognition motif-containing protein [Polaromonas sp. JS666]
gi|91695754|gb|ABE42583.1| RNA-binding region RNP-1 (RNA recognition motif) [Polaromonas sp.
JS666]
Length = 134
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 36/53 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ +A ++M++ RSKG+G+V ++ EAQ A+A MNG+ L GR I V+ RP
Sbjct: 29 ITSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIAGMNGQSLGGRSITVNEARP 81
>gi|398803602|ref|ZP_10562623.1| RRM domain-containing RNA-binding protein [Polaromonas sp. CF318]
gi|398096229|gb|EJL86556.1| RRM domain-containing RNA-binding protein [Polaromonas sp. CF318]
Length = 133
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 36/53 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ +A ++M++ RSKG+G+V ++ EAQ A+A MNG+ L GR I V+ RP
Sbjct: 29 ITSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIAGMNGQSLGGRSITVNEARP 81
>gi|448520030|ref|XP_003868205.1| hypothetical protein CORT_0B10690 [Candida orthopsilosis Co 90-125]
gi|380352544|emb|CCG22770.1| hypothetical protein CORT_0B10690 [Candida orthopsilosis]
Length = 498
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 36/49 (73%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ +A +IM++ +S+GYGYV FS++ A+ A+A+M GK +DGR I +D
Sbjct: 281 VISARVIMERATGKSRGYGYVDFSSKSAAENAIAEMQGKEIDGRPINLD 329
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 54 KGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
KG+GYV FS+ +EA+ AL +NG+ L+GR +D
Sbjct: 398 KGFGYVQFSSVDEAKAALEALNGEYLEGRPCRLD 431
>gi|67483728|ref|XP_657084.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|56474323|gb|EAL51698.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|449705266|gb|EMD45349.1| RNA recognition motif domain containing protein [Entamoeba
histolytica KU27]
Length = 136
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
++ D+ RSKG+G+VTF +E+A+KA+ +MN + L+GR I VD RP
Sbjct: 31 CKVVTDRDSQRSKGFGFVTFEKDEDAKKAIEEMNEQELEGRRIKVDVSRP 80
>gi|20257695|gb|AAM16013.1| glycine-rich RNA binding protein [Zea mays]
Length = 149
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ + II+D+ RS+G+G+VTFSTE+ + A+ MNGK LDGR I V+ +
Sbjct: 38 VLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKELDGRNITVNEAQS 90
>gi|118487563|gb|ABK95608.1| unknown [Populus trichocarpa]
Length = 133
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 30/105 (28%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAFS FG+VTE A +IMD+ RS+G+G+V +
Sbjct: 52 LKDAFSGFGEVTE---------------------------ARVIMDRETGRSRGFGFVHY 84
Query: 62 STEEEAQKALADMNGKLLDGRVI---FVDNVRPSRRYNTDAPLAR 103
+ E A +AL+ M+G+ L GR + F + RP + YN + +R
Sbjct: 85 DSVENASEALSAMDGQNLGGRTVRVSFAEERRPPQSYNDNHQGSR 129
>gi|195621182|gb|ACG32421.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 146
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 35/49 (71%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ + II+D+ RS+G+G+VTFSTE+ + A+ MNGK LDGR I V+
Sbjct: 34 VLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKELDGRNITVN 82
>gi|224060337|ref|XP_002300149.1| predicted protein [Populus trichocarpa]
gi|222847407|gb|EEE84954.1| predicted protein [Populus trichocarpa]
Length = 133
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 30/105 (28%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAFS FG+VTE A +IMD+ RS+G+G+V +
Sbjct: 52 LKDAFSGFGEVTE---------------------------ARVIMDRETGRSRGFGFVHY 84
Query: 62 STEEEAQKALADMNGKLLDGRVI---FVDNVRPSRRYNTDAPLAR 103
+ E A +AL+ M+G+ L GR + F + RP + YN + +R
Sbjct: 85 DSVENASEALSAMDGQNLGGRTVRVSFAEERRPPQSYNDNHQGSR 129
>gi|20257689|gb|AAM16010.1| glycine-rich RNA binding protein [Zea mays]
Length = 147
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ + II+D+ RS+G+G+VTFSTE+ + A+ MNGK LDGR I V+ +
Sbjct: 36 VLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKELDGRNITVNEAQS 88
>gi|20257687|gb|AAM16009.1| glycine-rich RNA binding protein [Zea mays]
gi|20257713|gb|AAM16022.1| glycine-rich RNA binding protein [Zea mays]
Length = 149
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ + II+D+ RS+G+G+VTFSTE+ + A+ MNGK LDGR I V+ +
Sbjct: 37 VLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKELDGRNITVNEAQS 89
>gi|20257715|gb|AAM16023.1| glycine-rich RNA binding protein [Zea mays]
gi|20257721|gb|AAM16026.1| glycine-rich RNA binding protein [Zea mays]
Length = 148
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ + II+D+ RS+G+G+VTFSTE+ + A+ MNGK LDGR I V+ +
Sbjct: 37 VLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKELDGRNITVNEAQS 89
>gi|133246|sp|P19682.1|ROC3_NICSY RecName: Full=28 kDa ribonucleoprotein, chloroplastic; Short=28RNP;
Flags: Precursor
gi|100388|pir||S12109 ribonucleoprotein, 28K, precursor - common tobacco
gi|19750|emb|CAA37880.1| unnamed protein product [Nicotiana sylvestris]
Length = 276
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 39/59 (66%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNT 97
+ +A ++ D+ RS+G+G+VT S+E E +A+A+++G+ LDGR I V+ R NT
Sbjct: 217 VVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERPRRNT 275
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALA-----DMNGKLLDGRVIFVDNVRPSRRYN 96
A +I ++ +RS+G+G+VT ST EEA KA+ D+NG+LL RP R
Sbjct: 126 AEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPR 185
Query: 97 TDAPLAR 103
T P R
Sbjct: 186 TFQPTYR 192
>gi|20257675|gb|AAM16003.1| glycine-rich RNA binding protein [Zea mays]
Length = 156
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ + II+D+ RS+G+G+VTFSTE+ + A+ MNGK LDGR I V+ +
Sbjct: 44 VLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKELDGRNITVNEAQS 96
>gi|20257669|gb|AAM16000.1| glycine-rich RNA binding protein [Zea mays]
Length = 155
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ + II+D+ RS+G+G+VTFSTE+ + A+ MNGK LDGR I V+ +
Sbjct: 44 VLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKELDGRNITVNEAQS 96
>gi|116747535|ref|YP_844222.1| RNP-1 like RNA-binding protein [Syntrophobacter fumaroxidans
MPOB]
gi|116696599|gb|ABK15787.1| RNP-1 like RNA-binding protein [Syntrophobacter fumaroxidans
MPOB]
Length = 122
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 37/50 (74%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 90
+AT++ D+ RS+G+G+V ST+EE QKA+A++NGK +GR + V+ +
Sbjct: 31 SATVVEDRESGRSRGFGFVEMSTKEEGQKAIAELNGKDFNGRPLTVNEAK 80
>gi|121604834|ref|YP_982163.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans
CJ2]
gi|120593803|gb|ABM37242.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans
CJ2]
Length = 132
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 36/53 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ +A ++M++ RSKG+G+V ++ EAQ A+A MNG+ L GR I V+ RP
Sbjct: 29 VTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIAGMNGQSLGGRSITVNEARP 81
>gi|20257711|gb|AAM16021.1| glycine-rich RNA binding protein [Zea mays]
Length = 150
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ + II+D+ RS+G+G+VTFSTE+ + A+ MNGK LDGR I V+ +
Sbjct: 39 VLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKELDGRNITVNEAQS 91
>gi|20257691|gb|AAM16011.1| glycine-rich RNA binding protein [Zea mays]
Length = 155
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ + II+D+ RS+G+G+VTFSTE+ + A+ MNGK LDGR I V+ +
Sbjct: 43 VLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKELDGRNITVNEAQS 95
>gi|20257667|gb|AAM15999.1| glycine-rich RNA binding protein [Zea mays]
gi|20257671|gb|AAM16001.1| glycine-rich RNA binding protein [Zea mays]
gi|20257677|gb|AAM16004.1| glycine-rich RNA binding protein [Zea mays]
gi|20257685|gb|AAM16008.1| glycine-rich RNA binding protein [Zea mays]
gi|20257703|gb|AAM16017.1| glycine-rich RNA binding protein [Zea mays]
gi|20257717|gb|AAM16024.1| glycine-rich RNA binding protein [Zea mays]
gi|20257719|gb|AAM16025.1| glycine-rich RNA binding protein [Zea mays]
Length = 154
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ + II+D+ RS+G+G+VTFSTE+ + A+ MNGK LDGR I V+ +
Sbjct: 43 VLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKELDGRNITVNEAQS 95
>gi|198282085|ref|NP_001105572.1| glycine-rich RNA binding protein [Zea mays]
gi|2668742|gb|AAB88616.1| glycine-rich RNA binding protein [Zea mays]
gi|194692162|gb|ACF80165.1| unknown [Zea mays]
gi|195623052|gb|ACG33356.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 145
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ + II+D+ RS+G+G+VTFSTE+ + A+ MNGK LDGR I V+ +
Sbjct: 34 VLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKELDGRNITVNEAQS 86
>gi|195618802|gb|ACG31231.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195625478|gb|ACG34569.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 146
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ + II+D+ RS+G+G+VTFSTE+ + A+ MNGK LDGR I V+ +
Sbjct: 34 VLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKELDGRNITVNEAQS 86
>gi|20257673|gb|AAM16002.1| glycine-rich RNA binding protein [Zea mays]
Length = 139
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 35/49 (71%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ + II+D+ RS+G+G+VTFSTE+ + A+ MNGK LDGR I V+
Sbjct: 28 VLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKELDGRNITVN 76
>gi|20257683|gb|AAM16007.1| glycine-rich RNA binding protein [Zea mays]
Length = 155
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ + II+D+ RS+G+G+VTFSTE+ + A+ MNGK LDGR I V+ +
Sbjct: 43 VLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKELDGRNITVNEAQS 95
>gi|13540314|gb|AAK29408.1|AF338225_1 embryonic poly(A) binding protein [Xenopus laevis]
Length = 629
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 40 FAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDA 99
+ ++MD RS+G+G+V + EEAQKA+++MNGK ++GR+I+V R +R +
Sbjct: 218 LSVKVMMDDS-GRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVG--RAQKRIERQS 274
Query: 100 PLARQSAQSPEE 111
L R+ Q +E
Sbjct: 275 ELKRKFEQIKQE 286
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
+ + ++ D+ + S+GYG+V F T E A +A+ MNG LL+ R +FV + + SRR
Sbjct: 125 ILSCKVVCDE--HGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFK-SRR 177
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 5/57 (8%)
Query: 34 ISDSFLFAATI----IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ FL TI +M +G + SKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 310 LRKEFLPYGTITSAKVMTEGGH-SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
>gi|407033602|gb|EKE36900.1| RNA recognition motif (RRM, RBD, or RNP domain) containing
protein [Entamoeba nuttalli P19]
Length = 136
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
++ D+ RSKG+G+VTF +E+A+KA+ +MN + L+GR I VD RP
Sbjct: 31 CKVVTDRDSQRSKGFGFVTFEKDEDAKKAIEEMNEQELEGRRIKVDVSRP 80
>gi|261193242|ref|XP_002623027.1| ribosome biogenesis protein Nop4 [Ajellomyces dermatitidis
SLH14081]
gi|239589162|gb|EEQ71805.1| ribosome biogenesis protein Nop4 [Ajellomyces dermatitidis
SLH14081]
gi|327356849|gb|EGE85706.1| ribosome biogenesis protein Nop4 [Ajellomyces dermatitidis ATCC
18188]
Length = 744
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 13/83 (15%)
Query: 12 VTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKAL 71
TE L ++ +S +PL + AT+++D +SKGYG+VTF+ E+A KAL
Sbjct: 61 TTESLTEYFSQS---YPLKH----------ATVVLDPQTKQSKGYGFVTFADHEDAAKAL 107
Query: 72 ADMNGKLLDGRVIFVDNVRPSRR 94
+ NG + DG+ + ++ P R
Sbjct: 108 EEFNGSVFDGKKLKIEVAEPRHR 130
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+I +G S G+G+V + A+KAL +NGK +DGR + VD
Sbjct: 190 VIPKRGTQHS-GFGFVVLRGRKNAEKALEAVNGKEIDGRTLAVD 232
>gi|255713222|ref|XP_002552893.1| KLTH0D03916p [Lachancea thermotolerans]
gi|238934273|emb|CAR22455.1| KLTH0D03916p [Lachancea thermotolerans CBS 6340]
Length = 505
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 36/49 (73%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ +A +IM++G +RS+GYGYV F + A+KA+ +M+GK +DGR I D
Sbjct: 282 VISARVIMERGTDRSRGYGYVDFENKFYAEKAVKEMHGKEIDGRPINCD 330
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 51 NRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
N+ KG+GYV +S+ +EAQKA + G +D R + +D P R
Sbjct: 395 NQPKGFGYVQYSSVDEAQKAFEALQGHYIDNRPVRLDFSTPKPR 438
>gi|148227542|ref|NP_001082094.1| embryonic polyadenylate-binding protein A [Xenopus laevis]
gi|94711253|sp|Q98SP8.2|EPABA_XENLA RecName: Full=Embryonic polyadenylate-binding protein A;
Short=Embryonic poly(A)-binding protein A; Short=ePAB-A;
Short=ePABP-A; AltName: Full=XePABP-A
gi|51258324|gb|AAH80020.1| EPAB protein [Xenopus laevis]
Length = 629
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 40 FAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDA 99
+ ++MD RS+G+G+V + EEAQKA+++MNGK ++GR+I+V R +R +
Sbjct: 218 LSVKVMMDDS-GRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVG--RAQKRIERQS 274
Query: 100 PLARQSAQSPEE 111
L R+ Q +E
Sbjct: 275 ELKRKFEQIKQE 286
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
+ + ++ D+ + S+GYG+V F T E A +A+ MNG LL+ R +FV + + SRR
Sbjct: 125 ILSCKVVCDE--HGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFK-SRR 177
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 5/57 (8%)
Query: 34 ISDSFLFAATI----IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ FL TI +M +G + SKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 310 LRKEFLPYGTITSAKVMTEGGH-SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
>gi|194693774|gb|ACF80971.1| unknown [Zea mays]
Length = 133
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 35/49 (71%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ + II+D+ RS+G+G+VTFSTE+ + A+ MNGK LDGR I V+
Sbjct: 34 VLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKELDGRNITVN 82
>gi|449494871|ref|XP_004159670.1| PREDICTED: cold-inducible RNA-binding protein B-like [Cucumis
sativus]
Length = 95
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 34/46 (73%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
A +I D R KG+G+VTF + EA+KAL M+G+++DGR+IFV+
Sbjct: 36 ARLIRDPKTERPKGFGFVTFQSPAEAKKALKAMDGRIVDGRLIFVE 81
>gi|154270523|ref|XP_001536116.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150409920|gb|EDN05308.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 633
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 13/83 (15%)
Query: 12 VTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKAL 71
TE L ++ +S +PL + AT+++D +SKGYG+VTF+ E+A KAL
Sbjct: 54 TTESLTEYFSQS---YPLKH----------ATVVLDPQTKQSKGYGFVTFADHEDAAKAL 100
Query: 72 ADMNGKLLDGRVIFVDNVRPSRR 94
+ NG DGR + ++ P R
Sbjct: 101 EEFNGSDFDGRKLKIEVAEPRHR 123
Score = 37.7 bits (86), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 37 SFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
SF ++ K + G+G+V + A+KAL +NGK +DGR + VD
Sbjct: 175 SFGKVKHAVIPKRGTKHSGFGFVVLRGRKNAEKALNAVNGKEVDGRTLAVD 225
>gi|367006051|ref|XP_003687757.1| hypothetical protein TPHA_0K01910 [Tetrapisispora phaffii CBS 4417]
gi|357526062|emb|CCE65323.1| hypothetical protein TPHA_0K01910 [Tetrapisispora phaffii CBS 4417]
Length = 416
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 36/49 (73%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ A +++++G +RS+GYGYV FS + A+KA+ +M+GK +DGR I D
Sbjct: 183 VIGARVMLERGTDRSRGYGYVDFSDKSYAEKAIKEMHGKEIDGREINCD 231
>gi|242080503|ref|XP_002445020.1| hypothetical protein SORBIDRAFT_07g002960 [Sorghum bicolor]
gi|241941370|gb|EES14515.1| hypothetical protein SORBIDRAFT_07g002960 [Sorghum bicolor]
Length = 140
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAF++FG+V +H A ++ D+ SKG+G+V +
Sbjct: 51 LRDAFAKFGEV----------------VH-----------ARVVTDRVSGFSKGFGFVRY 83
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+T EEA K + M+GK LDG VIF + RP
Sbjct: 84 ATTEEATKGIEGMDGKFLDGWVIFAEYARP 113
>gi|224059524|ref|XP_002299889.1| predicted protein [Populus trichocarpa]
gi|222847147|gb|EEE84694.1| predicted protein [Populus trichocarpa]
Length = 88
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 38/53 (71%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
A ++++ R KG+G+VTF +E +A KAL MNG++++GR+IFV+ + + R
Sbjct: 36 ARLVVESKTLRPKGFGFVTFESEADAHKALKAMNGRIVNGRLIFVEVAKDTER 88
>gi|116792076|gb|ABK26221.1| unknown [Picea sitchensis]
Length = 151
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 45/99 (45%), Gaps = 27/99 (27%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L +AFS+FG+V E A ++ DK SKG+ +V +
Sbjct: 63 LREAFSKFGRVLE---------------------------ARVVTDKMNGVSKGFAFVRY 95
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
+T+EEA K M+GK LDG VIF D RP D P
Sbjct: 96 ATQEEADKGKEGMDGKFLDGWVIFADYARPRPPRTYDNP 134
>gi|194337130|ref|YP_002018924.1| RNP-1 like RNA-binding protein [Pelodictyon phaeoclathratiforme
BU-1]
gi|194309607|gb|ACF44307.1| RNP-1 like RNA-binding protein [Pelodictyon phaeoclathratiforme
BU-1]
Length = 90
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAFS+FGQV +A+II DK RSKG+G+V
Sbjct: 17 LRDAFSEFGQVE---------------------------SASIINDKFSGRSKGFGFVDM 49
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
E EA++A+ MN K L+GR I V+ +P
Sbjct: 50 PNESEAREAIESMNEKDLNGRTIKVNEAKP 79
>gi|365091634|ref|ZP_09328989.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
gi|363415945|gb|EHL23069.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
Length = 192
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L AF QFG VT +A ++M++ RSKG+G+V
Sbjct: 19 LEQAFGQFGAVT---------------------------SAKVMMERDTGRSKGFGFVEM 51
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
++ EAQ A++ MNG+ L GR I V+ RP
Sbjct: 52 GSDAEAQAAISGMNGQPLGGRSIVVNEARP 81
>gi|195626882|gb|ACG35271.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 203
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ + II+D+ RS+G+G+VTFSTE+ + A+ MNGK LDGR I V+ +
Sbjct: 91 VLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKELDGRNITVNEAQS 143
>gi|212528572|ref|XP_002144443.1| ribosome biogenesis (Nop4), putative [Talaromyces marneffei ATCC
18224]
gi|210073841|gb|EEA27928.1| ribosome biogenesis (Nop4), putative [Talaromyces marneffei ATCC
18224]
Length = 728
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 40/66 (60%)
Query: 29 LHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 88
L F L AT+++D +SKGYG+VTF+ E+AQ+AL + NG +GR I V+
Sbjct: 63 LTEFFSQSYVLKHATVVIDPETKKSKGYGFVTFADIEDAQRALEEFNGADFEGRKIKVEV 122
Query: 89 VRPSRR 94
+P +R
Sbjct: 123 AQPRKR 128
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
++ K N G+G+V + A+KAL +NGK +DGR + VD
Sbjct: 191 VVPKKGNVQAGFGFVVLRGRKNAEKALEAVNGKEVDGRTLAVD 233
>gi|170589631|ref|XP_001899577.1| RNA recognition motif. [Brugia malayi]
gi|158593790|gb|EDP32385.1| RNA recognition motif [Brugia malayi]
Length = 287
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L AF FG+++ F+ PL Y L S S A +I D +SKGYG+V+F
Sbjct: 101 LKAAFESFGEISS-----VFRPSYNLPL-YTLASLSCFSEAKVIRDPQTLKSKGYGFVSF 154
Query: 62 STEEEAQKALADMNGKLLDGRVI 84
+E AQKA+ +MNG+++ R I
Sbjct: 155 PVKENAQKAIEEMNGQMIGRRQI 177
>gi|359688008|ref|ZP_09258009.1| RNP-1 like RNA-binding protein [Leptospira licerasiae serovar
Varillal str. MMD0835]
Length = 100
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV----DNVRPSRRYNT 97
A I++D+ RS+G+G+VTF + A A++++NGK LDGR I V D R R NT
Sbjct: 32 ANIVVDRETGRSRGFGFVTFVDQSSANAAVSELNGKDLDGRNIVVSVAEDKSRSDRNRNT 91
Query: 98 DAPLAR 103
+ R
Sbjct: 92 NRKFQR 97
>gi|333377706|ref|ZP_08469439.1| hypothetical protein HMPREF9456_01034 [Dysgonomonas mossii DSM
22836]
gi|332883726|gb|EGK04006.1| hypothetical protein HMPREF9456_01034 [Dysgonomonas mossii DSM
22836]
Length = 106
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
+ +A +IMDK RSKGYG+V QKA+ ++NG DGR I V RP R D
Sbjct: 27 ISSAKVIMDKATGRSKGYGFVELEDNAAGQKAIEELNGAEYDGRTISVSEARP-RTEGGD 85
Query: 99 AP 100
P
Sbjct: 86 RP 87
>gi|21553972|gb|AAM63053.1| glycine-rich RNA binding protein, putative [Arabidopsis thaliana]
Length = 136
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 27/86 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L AF+ FG+VTE AT+I D+ RS+G+G+V+F
Sbjct: 51 LKQAFTSFGEVTE---------------------------ATVIADRETGRSRGFGFVSF 83
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD 87
S E+ A A+ +M+GK L+GR I V+
Sbjct: 84 SCEDSANNAIKEMDGKELNGRQIRVN 109
>gi|302762278|ref|XP_002964561.1| hypothetical protein SELMODRAFT_81392 [Selaginella moellendorffii]
gi|302814304|ref|XP_002988836.1| hypothetical protein SELMODRAFT_128832 [Selaginella moellendorffii]
gi|300143407|gb|EFJ10098.1| hypothetical protein SELMODRAFT_128832 [Selaginella moellendorffii]
gi|300168290|gb|EFJ34894.1| hypothetical protein SELMODRAFT_81392 [Selaginella moellendorffii]
Length = 149
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 27/86 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAFS FG++ E +I D+ RS+G+G+V++
Sbjct: 53 LRDAFSPFGEIIE---------------------------VRVIQDRETGRSRGFGFVSY 85
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD 87
T++EAQKA+ M+G++LDGR I V+
Sbjct: 86 ITDQEAQKAMEAMDGRVLDGRTIRVN 111
>gi|15229525|ref|NP_189025.1| glycine-rich RNA-binding protein 4 [Arabidopsis thaliana]
gi|30687226|ref|NP_850629.1| glycine-rich RNA-binding protein 4 [Arabidopsis thaliana]
gi|9294652|dbj|BAB03001.1| glycine-rich RNA binding protein-like [Arabidopsis thaliana]
gi|17979516|gb|AAL50093.1| AT3g23830/F14O13_2 [Arabidopsis thaliana]
gi|20453303|gb|AAM19890.1| AT3g23830/F14O13_2 [Arabidopsis thaliana]
gi|332643298|gb|AEE76819.1| glycine-rich RNA-binding protein 4 [Arabidopsis thaliana]
gi|332643299|gb|AEE76820.1| glycine-rich RNA-binding protein 4 [Arabidopsis thaliana]
Length = 136
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 27/86 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L AF+ FG+VTE AT+I D+ RS+G+G+V+F
Sbjct: 51 LKQAFTSFGEVTE---------------------------ATVIADRETGRSRGFGFVSF 83
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD 87
S E+ A A+ +M+GK L+GR I V+
Sbjct: 84 SCEDSANNAIKEMDGKELNGRQIRVN 109
>gi|357112848|ref|XP_003558218.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Brachypodium distachyon]
Length = 168
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
+ A +I D+ RSKG+G+V + + +EA+ A MN K LDG VIFVD +P +
Sbjct: 88 VLEAKVITDRISGRSKGFGFVRYVSLQEAEAARQGMNAKFLDGWVIFVDPAKPREQKPAP 147
Query: 99 AP 100
P
Sbjct: 148 QP 149
>gi|238879474|gb|EEQ43112.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 399
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 34/49 (69%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ A +IM++ +S+GYGYV F ++ A+KAL +M GK +DGR I +D
Sbjct: 194 VIGARVIMERATGKSRGYGYVDFESKSAAEKALEEMQGKEIDGRPINLD 242
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 54 KGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
KG+GYV FS+ +EA+ AL MNG+ ++GR +D
Sbjct: 311 KGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRLD 344
>gi|68473894|ref|XP_719050.1| potential nuclear localization sequence binding protein Nsr1p
[Candida albicans SC5314]
gi|68474099|ref|XP_718946.1| potential nuclear localization sequence binding protein Nsr1p
[Candida albicans SC5314]
gi|46440741|gb|EAL00044.1| potential nuclear localization sequence binding protein Nsr1p
[Candida albicans SC5314]
gi|46440849|gb|EAL00151.1| potential nuclear localization sequence binding protein Nsr1p
[Candida albicans SC5314]
Length = 400
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 34/49 (69%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ A +IM++ +S+GYGYV F ++ A+KAL +M GK +DGR I +D
Sbjct: 194 VIGARVIMERATGKSRGYGYVDFESKSAAEKALEEMQGKEIDGRPINLD 242
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 54 KGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
KG+GYV FS+ +EA+ AL MNG+ ++GR +D
Sbjct: 311 KGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRLD 344
>gi|344304396|gb|EGW34628.1| hypothetical protein SPAPADRAFT_57674 [Spathaspora passalidarum
NRRL Y-27907]
Length = 414
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 34/49 (69%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ A +IM++ +S+GYGYV F ++ A+KAL +M GK +DGR I +D
Sbjct: 201 VIGARVIMERSTGKSRGYGYVDFDNKDSAEKALVEMQGKEIDGRPINLD 249
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 54 KGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
KG+GYV FS+ +EA+ AL +NG+ ++GR +D
Sbjct: 317 KGFGYVQFSSVDEAKAALEALNGEYIEGRACRLD 350
>gi|225560420|gb|EEH08701.1| RNA recognition domain-containing protein-containing protein
[Ajellomyces capsulatus G186AR]
Length = 740
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 13/83 (15%)
Query: 12 VTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKAL 71
TE L ++ +S +PL + AT+++D +SKGYG+VTF+ E+A KAL
Sbjct: 59 TTESLTEYFSQS---YPLKH----------ATVVLDPQTKQSKGYGFVTFADHEDAAKAL 105
Query: 72 ADMNGKLLDGRVIFVDNVRPSRR 94
+ NG DGR + ++ P R
Sbjct: 106 EEFNGSDFDGRKLKIEVAEPRHR 128
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 37 SFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
SF ++ K + G+G+V + A+KAL +NGK +DGR + VD
Sbjct: 180 SFGKVKHAVIPKRGTKHSGFGFVVLRGRKNAEKALNAVNGKEVDGRTLAVD 230
>gi|52346030|ref|NP_001005062.1| embryonic polyadenylate-binding protein [Xenopus (Silurana)
tropicalis]
gi|82235830|sp|Q6DEY7.1|EPAB_XENTR RecName: Full=Embryonic polyadenylate-binding protein;
Short=Embryonic poly(A)-binding protein; Short=ePABP
gi|49899948|gb|AAH76956.1| MGC89376 protein [Xenopus (Silurana) tropicalis]
Length = 629
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 40 FAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDA 99
+ ++MD RS+G+G+V + EEAQKA+++MNGK ++GR+I+V R +R
Sbjct: 218 LSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVG--RAQKRIERQG 274
Query: 100 PLARQSAQSPEE 111
L R+ Q +E
Sbjct: 275 ELKRKFEQIKQE 286
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
+ + ++ D+ + S+GYG+V F T+E A +A+ MNG LL+ R +FV + + SRR
Sbjct: 125 ILSCKVVCDE--HGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFK-SRR 177
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++ + G SKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
>gi|403341233|gb|EJY69916.1| RNA binding domain-containing protein 28 [Oxytricha trifallax]
Length = 732
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 39/59 (66%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNT 97
+ A + + N ++G+G++ FST+EEAQKA+ MNG+ GRV+ V+ PSR+Y +
Sbjct: 56 IVAVNVPIKNENNLNRGFGFIEFSTKEEAQKAIDGMNGQKYKGRVLAVEYSTPSRKYES 114
>gi|50286801|ref|XP_445830.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525136|emb|CAG58749.1| unnamed protein product [Candida glabrata]
Length = 425
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 36/49 (73%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ AA ++ ++G +RS+GYGYV F + A+KA+ +M+GK +DGR I VD
Sbjct: 202 VVAARVMYERGTDRSRGYGYVDFEDKSYAEKAVKEMHGKEIDGRPINVD 250
>gi|125548231|gb|EAY94053.1| hypothetical protein OsI_15830 [Oryza sativa Indica Group]
Length = 113
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 39/76 (51%), Gaps = 27/76 (35%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
LA+AFSQ+GQV E ATI+ DK NR KG+G+V F
Sbjct: 53 LAEAFSQYGQVLE---------------------------ATIVTDKMTNRPKGFGFVKF 85
Query: 62 STEEEAQKALADMNGK 77
++EE A KA +MNGK
Sbjct: 86 ASEEAANKAKEEMNGK 101
>gi|449435011|ref|XP_004135289.1| PREDICTED: cold-inducible RNA-binding protein B-like isoform 1
[Cucumis sativus]
gi|449435013|ref|XP_004135290.1| PREDICTED: cold-inducible RNA-binding protein B-like isoform 2
[Cucumis sativus]
Length = 89
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 34/46 (73%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
A +I D R KG+G+VTF + EA+KAL M+G+++DGR+IFV+
Sbjct: 36 ARLIRDPKTERPKGFGFVTFQSPAEAKKALKAMDGRIVDGRLIFVE 81
>gi|375103924|ref|ZP_09750185.1| RRM domain-containing RNA-binding protein [Burkholderiales
bacterium JOSHI_001]
gi|374664655|gb|EHR69440.1| RRM domain-containing RNA-binding protein [Burkholderiales
bacterium JOSHI_001]
Length = 129
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 35/53 (66%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ +A ++MD+ RSKG+G+V + EEAQ A+ ++G +DGR + V+ RP
Sbjct: 29 VTSAKVMMDRDSGRSKGFGFVEMGSHEEAQAAIRKLHGASVDGRALVVNEARP 81
>gi|34785785|gb|AAH57481.1| Cirbp protein [Danio rerio]
Length = 121
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 34/44 (77%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+I D+ +RS+G+G+VTF E+A+ A+A MNGK +DGR+I VD
Sbjct: 29 VIRDRETDRSRGFGFVTFENPEDAKDAMAAMNGKQVDGRMIRVD 72
>gi|301125993|ref|XP_002909814.1| polyadenylate-binding protein, putative [Phytophthora infestans
T30-4]
gi|262103703|gb|EEY61755.1| polyadenylate-binding protein, putative [Phytophthora infestans
T30-4]
Length = 587
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 6/79 (7%)
Query: 34 ISDSFLFAATI----IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV--D 87
+ ++F TI +M S+G+G+V FST EEA KA+A+MNGKL+ G+ ++V
Sbjct: 294 LREAFAECGTITSSRVMRDPNGNSRGFGFVCFSTPEEANKAVAEMNGKLISGKPVYVALA 353
Query: 88 NVRPSRRYNTDAPLARQSA 106
+ RR +A A+Q A
Sbjct: 354 QRKEVRRAQLEAQHAQQRA 372
>gi|344231201|gb|EGV63083.1| hypothetical protein CANTEDRAFT_106956 [Candida tenuis ATCC
10573]
Length = 231
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 35/49 (71%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ +A +IM++ +S+GYGYV F ++ +A+KAL D GK +DGR I +D
Sbjct: 29 VISARVIMERATGKSRGYGYVDFESKADAEKALQDFQGKEIDGRPINLD 77
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 54 KGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
KG+GYV + + EEA+ AL +NG+ ++GR +D P
Sbjct: 145 KGFGYVQYGSIEEAKAALEALNGEYIEGRPCRLDYSTP 182
>gi|357445711|ref|XP_003593133.1| Glycine-rich RNA-binding protein [Medicago truncatula]
gi|355482181|gb|AES63384.1| Glycine-rich RNA-binding protein [Medicago truncatula]
Length = 491
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 35/53 (66%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
L A +++DK RS+G+G+VTF +E ++A+ MNG LDGR I VD +P
Sbjct: 255 LVEAKVVVDKFSGRSRGFGFVTFDDKEAMEEAIEAMNGIDLDGRTITVDKAQP 307
>gi|226499338|ref|NP_001149519.1| glycine-rich RNA-binding protein 8 [Zea mays]
gi|195627730|gb|ACG35695.1| glycine-rich RNA-binding protein 8 [Zea mays]
Length = 198
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 30/108 (27%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAFS+FG +TE A +++DK RS+G+G+VTF
Sbjct: 23 LKDAFSKFGNLTE---------------------------AKVVLDKFSGRSRGFGFVTF 55
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVR---PSRRYNTDAPLARQSA 106
++ + A+ MNG LDGR I VD + P R N D R+
Sbjct: 56 DEKQAMEDAIEGMNGLDLDGRNITVDKAQPQGPGRDRNGDRDYDRERG 103
>gi|115529229|dbj|BAF34340.1| putative glycine-rich RNA-binding protein [Dianthus caryophyllus]
Length = 163
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 27/86 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
LA+AF++FG+VT+ + II D+ RS+G+G+VTF
Sbjct: 22 LAEAFNKFGEVTD---------------------------SKIINDRETGRSRGFGFVTF 54
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD 87
+ E+ + A+ +MNGK LDGR I V+
Sbjct: 55 ANEQSMRDAIDEMNGKELDGRSITVN 80
>gi|299531903|ref|ZP_07045303.1| RNA-binding protein RNP-3 [Comamonas testosteroni S44]
gi|298720078|gb|EFI61035.1| RNA-binding protein RNP-3 [Comamonas testosteroni S44]
Length = 162
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+A ++M++ RSKG+G+V ++E EAQ A+ MNG+ L GR + V+ RP
Sbjct: 31 SARVMMERDTGRSKGFGFVEMASEAEAQAAIQGMNGQPLGGRSLVVNEARP 81
>gi|264680852|ref|YP_003280762.1| RNA-binding protein RNP-3 [Comamonas testosteroni CNB-2]
gi|262211368|gb|ACY35466.1| RNA-binding protein RNP-3 [Comamonas testosteroni CNB-2]
Length = 164
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+A ++M++ RSKG+G+V ++E EAQ A+ MNG+ L GR + V+ RP
Sbjct: 31 SARVMMERDTGRSKGFGFVEMASEAEAQAAIQGMNGQPLGGRSLVVNEARP 81
>gi|301120388|ref|XP_002907921.1| polyadenylate-binding protein 1-B [Phytophthora infestans T30-4]
gi|262102952|gb|EEY61004.1| polyadenylate-binding protein 1-B [Phytophthora infestans T30-4]
Length = 640
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 6/79 (7%)
Query: 34 ISDSFLFAATI----IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV--D 87
+ ++F TI +M S+G+G+V FST EEA KA+A+MNGKL+ G+ ++V
Sbjct: 348 LREAFAECGTITSSRVMRDPNGNSRGFGFVCFSTPEEANKAVAEMNGKLISGKPVYVALA 407
Query: 88 NVRPSRRYNTDAPLARQSA 106
+ RR +A A+Q A
Sbjct: 408 QRKEVRRAQLEAQHAQQRA 426
>gi|115454539|ref|NP_001050870.1| Os03g0670700 [Oryza sativa Japonica Group]
gi|108710321|gb|ABF98116.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
[Oryza sativa Japonica Group]
gi|113549341|dbj|BAF12784.1| Os03g0670700 [Oryza sativa Japonica Group]
Length = 196
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
+ + II D+ RS+G+G+VTFS+E+ + A+ MNGK LDGR I V+ + R
Sbjct: 34 ILDSKIINDRETGRSRGFGFVTFSSEQSMRDAIEGMNGKELDGRNITVNEAQSRR 88
>gi|363754371|ref|XP_003647401.1| hypothetical protein Ecym_6201 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891038|gb|AET40584.1| hypothetical protein Ecym_6201 [Eremothecium cymbalariae
DBVPG#7215]
Length = 448
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ +A +I ++G RS+GYGYV F + A+KA+ +M GK +DGR I VD
Sbjct: 237 VISARVIYERGTERSRGYGYVDFEDKSYAEKAIKEMQGKEIDGRPINVD 285
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 51 NRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
N+ KG+GYV +++ EEAQKAL + G+ +D R + +D
Sbjct: 350 NQPKGFGYVQYASIEEAQKALDKLQGEYIDNRPVRLD 386
>gi|418528344|ref|ZP_13094294.1| RNA-binding protein RNP-3 [Comamonas testosteroni ATCC 11996]
gi|371454720|gb|EHN67722.1| RNA-binding protein RNP-3 [Comamonas testosteroni ATCC 11996]
Length = 163
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+A ++M++ RSKG+G+V ++E EAQ A+ MNG+ L GR + V+ RP
Sbjct: 31 SARVMMERDTGRSKGFGFVEMASEAEAQAAIQGMNGQPLGGRSLVVNEARP 81
>gi|347819854|ref|ZP_08873288.1| RNP-1 like RNA-binding protein [Verminephrobacter aporrectodeae
subsp. tuberculatae At4]
Length = 168
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L AF QFG VT +A ++M++ RSKG+G+V
Sbjct: 19 LEQAFGQFGAVT---------------------------SAKVMMERDTGRSKGFGFVEM 51
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
++ EAQ A+ MNG+ L GR I V+ RP
Sbjct: 52 GSDAEAQAAITGMNGQPLGGRSIVVNEARP 81
>gi|328767903|gb|EGF77951.1| hypothetical protein BATDEDRAFT_27077 [Batrachochytrium
dendrobatidis JAM81]
Length = 106
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 29/93 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
LADAFSQFG+V + +V + D+ RS+G+G+VTF
Sbjct: 27 LADAFSQFGEVVDSIV---------------------------LKDRETGRSRGFGFVTF 59
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD--NVRPS 92
S+ E A A+ MNG+ L+GR I V+ N RP+
Sbjct: 60 SSPESASAAVDAMNGQDLNGRNIRVNLANERPA 92
>gi|406997918|gb|EKE15908.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 93
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 33/51 (64%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+A II D+ RSKG+G+V STEE AQKA+ +GK GR + V+ RP
Sbjct: 31 SANIITDRMSGRSKGFGFVEMSTEEGAQKAIEMFHGKEFGGRTLTVNEARP 81
>gi|406959178|gb|EKD86596.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 81
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 37/53 (69%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ +A ++ D+ RS+G+G+V ST+EEAQ A+ ++NG ++GR I V+ RP
Sbjct: 25 VVSAQVVKDRETGRSRGFGFVEMSTDEEAQNAVKNLNGTDVEGRKIVVNIARP 77
>gi|224119514|ref|XP_002318093.1| predicted protein [Populus trichocarpa]
gi|222858766|gb|EEE96313.1| predicted protein [Populus trichocarpa]
Length = 327
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSRRY 95
+ +A ++ D+ NRS+G+G+VT STE E A+A ++G+ LDGR I V+ RP R +
Sbjct: 269 VVSARVVFDRETNRSRGFGFVTMSTESELNDAIAALDGQNLDGRPIRVNVAEERPRRTF 327
Score = 41.2 bits (95), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
A +I ++ + S+G+G+VT ST EE++KA+ ++ LDGR + V+ P
Sbjct: 178 AEVIYNRETDTSRGFGFVTMSTVEESEKAVEMLHRYDLDGRFLTVNKAAP 227
>gi|410899897|ref|XP_003963433.1| PREDICTED: embryonic polyadenylate-binding protein-like [Takifugu
rubripes]
Length = 606
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M + RS+G+G+V F+ E+AQKA+ +MNGK L+G+VI+V R +R L R+
Sbjct: 222 VMKDERGRSRGFGFVNFAHHEDAQKAVDEMNGKELNGKVIYVG--RAQKRLERQGELKRK 279
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 88
+ + ++ D+ SKGYG+V F TEE A +A+ MNG LL+ R +FV +
Sbjct: 125 ILSCKVVCDE--RGSKGYGFVHFETEEAANRAIETMNGMLLNDRKVFVGH 172
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 28/35 (80%)
Query: 52 RSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+S+G+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 331 QSRGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>gi|260841407|ref|XP_002613907.1| hypothetical protein BRAFLDRAFT_268603 [Branchiostoma floridae]
gi|229299297|gb|EEN69916.1| hypothetical protein BRAFLDRAFT_268603 [Branchiostoma floridae]
Length = 321
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 33/46 (71%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
A +IM G +RS+G+GYV F +EE A++A+ DMN LDGR I V+
Sbjct: 142 ARVIMKPGTDRSRGFGYVDFESEEAAKEAMDDMNQSELDGRTINVE 187
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
A ++ D+ RSKG+GY+ F +E+ A++AL +M+G+ LDGR I +D P
Sbjct: 237 ARVVTDRESRRSKGFGYIDFDSEDAAKEALKNMDGQELDGRGIRLDFATP 286
>gi|225435044|ref|XP_002284323.1| PREDICTED: cold-inducible RNA-binding protein [Vitis vinifera]
gi|297746123|emb|CBI16179.3| unnamed protein product [Vitis vinifera]
Length = 112
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
A +I D R KG+G+V F +E +A+KAL MNG+++ GR+IFV+ + +R
Sbjct: 54 ARLIKDPKTQRPKGFGFVKFESEVDAEKALKAMNGRIVRGRLIFVEIAKTTR 105
>gi|356543191|ref|XP_003540046.1| PREDICTED: nucleolin-like [Glycine max]
Length = 145
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
A ++ D+ SKG+G+V ++T EEA K + M+GK LDG VIF + RP
Sbjct: 78 ARVVTDRVSGYSKGFGFVQYATIEEAAKGIEGMDGKFLDGWVIFAEYARP 127
>gi|242083506|ref|XP_002442178.1| hypothetical protein SORBIDRAFT_08g015580 [Sorghum bicolor]
gi|241942871|gb|EES16016.1| hypothetical protein SORBIDRAFT_08g015580 [Sorghum bicolor]
Length = 250
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 36/51 (70%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89
+ A II+D+ RS+G+G+VT+++ EEA A+ M+GK LDGR I V++
Sbjct: 56 VIEARIILDRESGRSRGFGFVTYTSSEEASAAITAMDGKTLDGRSIRVNHA 106
>gi|154297435|ref|XP_001549144.1| hypothetical protein BC1G_12314 [Botryotinia fuckeliana B05.10]
Length = 794
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Query: 33 LISDSF-LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
L SD++ L AT+++D +SKGYG+VTF+ E+AQ+AL + NG+ GR + ++ +P
Sbjct: 59 LFSDNYPLKHATVVLDPVTKQSKGYGFVTFADAEDAQRALDEFNGQSFQGRKMKIEIAQP 118
Query: 92 SRRYNTDAP 100
R DAP
Sbjct: 119 RSR---DAP 124
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 46 MDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
M K K + G+G++ ++ A+KALA +NG+ +DGR + VD
Sbjct: 195 MPKVKGKEAGFGFIVMRGKKNAEKALAAINGREIDGRQLAVD 236
>gi|418530958|ref|ZP_13096878.1| RNA recognition motif-containing protein [Comamonas testosteroni
ATCC 11996]
gi|371452037|gb|EHN65069.1| RNA recognition motif-containing protein [Comamonas testosteroni
ATCC 11996]
Length = 83
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 30 HYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89
H+ D + AA IIMD+ RS+G+G+V T+E+AQKA+ +N + L GR + V
Sbjct: 22 HFGSCGD--VVAADIIMDRETGRSRGFGFVEMGTQEQAQKAIETLNDQPLGGRALGVALA 79
Query: 90 RPSR 93
RP +
Sbjct: 80 RPRK 83
>gi|347841454|emb|CCD56026.1| hypothetical protein [Botryotinia fuckeliana]
Length = 794
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Query: 33 LISDSF-LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
L SD++ L AT+++D +SKGYG+VTF+ E+AQ+AL + NG+ GR + ++ +P
Sbjct: 59 LFSDNYPLKHATVVLDPVTKQSKGYGFVTFADAEDAQRALDEFNGQSFQGRKMKIEIAQP 118
Query: 92 SRRYNTDAP 100
R DAP
Sbjct: 119 RSR---DAP 124
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 46 MDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
M K K + G+G++ ++ A+KALA +NG+ +DGR + VD
Sbjct: 195 MPKVKGKEAGFGFIVMRGKKNAEKALAAINGREIDGRQLAVD 236
>gi|221069836|ref|ZP_03545941.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
gi|220714859|gb|EED70227.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
Length = 158
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+A ++M++ RSKG+G+V ++E EAQ A+ MNG+ L GR + V+ RP
Sbjct: 31 SARVMMERDTGRSKGFGFVEMASEAEAQAAIQGMNGQPLGGRSLVVNEARP 81
>gi|169861389|ref|XP_001837329.1| single-stranded DNA binding protein [Coprinopsis cinerea
okayama7#130]
gi|116502051|gb|EAU84946.1| single-stranded DNA binding protein [Coprinopsis cinerea
okayama7#130]
Length = 569
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 6/66 (9%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
+ +AT+ MD+ +S+G+GYV F+T E AQKAL ++NGK +D R I VD P N D
Sbjct: 353 IESATVQMDRNTGKSRGFGYVHFTTVEAAQKAL-ELNGKEIDNRPIKVDISTP---RNPD 408
Query: 99 APLARQ 104
A ARQ
Sbjct: 409 A--ARQ 412
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%)
Query: 31 YFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 90
+ L +D + + + D+ R KG+GYV F E A+KA NG LDGR I +D +
Sbjct: 444 WSLFNDYGVKSVRLPTDRESGRPKGFGYVEFEDVEGAKKAFEANNGADLDGRPIRLDYSQ 503
Query: 91 P 91
P
Sbjct: 504 P 504
>gi|302496006|ref|XP_003010008.1| hypothetical protein ARB_03747 [Arthroderma benhamiae CBS 112371]
gi|291173542|gb|EFE29368.1| hypothetical protein ARB_03747 [Arthroderma benhamiae CBS 112371]
Length = 224
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 21/86 (24%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L + FS+FG + E L+ ++ D+ NRS+G+G+V F
Sbjct: 89 LREGFSKFGTIEEALISH---------------------VQIVVKDRDTNRSRGFGFVRF 127
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD 87
S++ EA AL MN + DGRVI VD
Sbjct: 128 SSDSEADAALTAMNNQEFDGRVIRVD 153
>gi|303315989|ref|XP_003067999.1| Glycine-rich RNA-binding protein 2, mitochondrial precursor ,
putative [Coccidioides posadasii C735 delta SOWgp]
gi|240107675|gb|EER25854.1| Glycine-rich RNA-binding protein 2, mitochondrial precursor ,
putative [Coccidioides posadasii C735 delta SOWgp]
Length = 117
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV--RPS 92
A ++ D+ NRS+G+G+V F++E EA+ A+ +MN + DGR I VD RPS
Sbjct: 31 AIVVKDRDTNRSRGFGFVRFASEGEAEAAMNEMNNQEFDGRTIRVDKAADRPS 83
>gi|323348433|gb|EGA82678.1| Nsr1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 254
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 12/78 (15%)
Query: 22 KSQPLFPL--HYFLISDSFL----------FAATIIMDKGKNRSKGYGYVTFSTEEEAQK 69
K+Q LF L + + I D +L A +I ++G +RS+GYGYV F + A+K
Sbjct: 5 KNQLLFSLVDYTWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEK 64
Query: 70 ALADMNGKLLDGRVIFVD 87
A+ +M GK +DGR I D
Sbjct: 65 AIQEMQGKEIDGRPINCD 82
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 54 KGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
KG+GYV FS E+A+KAL + G+ +D R + +D P R N D
Sbjct: 148 KGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSP--RPNND 190
>gi|148227710|ref|NP_001085351.1| embryonic polyadenylate-binding protein B [Xenopus laevis]
gi|82236619|sp|Q6GR16.1|EPABB_XENLA RecName: Full=Embryonic polyadenylate-binding protein B;
Short=Embryonic poly(A)-binding protein B; Short=ePAB-B;
Short=ePABP-B; AltName: Full=XePABP-B
gi|49257242|gb|AAH71118.1| MGC81363 protein [Xenopus laevis]
Length = 629
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 40 FAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDA 99
+ ++MD RS+G+G+V + EEAQKA+ +MNGK ++GR+++V R +R
Sbjct: 218 LSVKVMMDNS-GRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVG--RAQKRIERQG 274
Query: 100 PLARQSAQSPEE 111
L R+ Q +E
Sbjct: 275 ELKRKFEQIKQE 286
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 40 FAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+T +M +G SKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSTKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
S+GYG+V F T+E A +A+ MNG LL+ R +FV + + SRR
Sbjct: 137 SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFK-SRR 177
>gi|38346812|emb|CAD41379.2| OSJNBa0088A01.19 [Oryza sativa Japonica Group]
Length = 92
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 35/47 (74%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 90
++M++ R +G+ ++++++EEE++ A+ M GK LDGRVIFV+ R
Sbjct: 41 LVMERVAKRPRGFAFLSYASEEESKNAMEGMQGKFLDGRVIFVEVAR 87
>gi|444318191|ref|XP_004179753.1| hypothetical protein TBLA_0C04360 [Tetrapisispora blattae CBS 6284]
gi|387512794|emb|CCH60234.1| hypothetical protein TBLA_0C04360 [Tetrapisispora blattae CBS 6284]
Length = 403
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ +A +I +KG +RS+GYGYV F + A+KA+ +M GK +DGR I D
Sbjct: 187 VLSARVIYEKGTDRSRGYGYVDFKNKTFAEKAIKEMQGKEIDGRPINCD 235
>gi|2624326|emb|CAA05728.1| OsGRP1 [Oryza sativa Japonica Group]
Length = 160
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
+ + II D+ RS+G+G+VTFS+E+ + A+ MNGK LDGR I V+ + R
Sbjct: 34 ILESKIINDRETGRSRGFGFVTFSSEQAMRDAIEGMNGKELDGRNITVNEAQSRR 88
>gi|308272084|emb|CBX28692.1| Glycine-rich RNA-binding protein 8 [uncultured Desulfobacterium
sp.]
Length = 127
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 34/51 (66%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ +II DK RSKG+G+V S++ EAQ A+ +NGK L GR I V+ RP
Sbjct: 29 SVSIINDKYSGRSKGFGFVEMSSDAEAQAAIEGLNGKELKGRAINVNEARP 79
>gi|224069480|ref|XP_002326357.1| predicted protein [Populus trichocarpa]
gi|222833550|gb|EEE72027.1| predicted protein [Populus trichocarpa]
Length = 286
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSRRY 95
A ++ D+ RSKG+G+VT+S+ EE + A+ +NG LDGR I V +P RR+
Sbjct: 231 AKVVYDRDSGRSKGFGFVTYSSAEEVEDAVDSLNGAELDGRAIRVSVAEAKPRRRF 286
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 27 FPLHYFLISDSFLFAATIIM-----DKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81
F ++ ++D F A + M DK RS+G+G+VT ST EE + A NG LDG
Sbjct: 100 FNVNSAQLADLFKSAGNVEMVEVKYDKVTGRSRGFGFVTMSTIEEVEAASQQFNGYELDG 159
Query: 82 RVIFVDNVRPSRR 94
R + V++ P +R
Sbjct: 160 RPLRVNSGPPPQR 172
>gi|120613408|ref|YP_973086.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
gi|120591872|gb|ABM35312.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
Length = 176
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L AF QFG VT +A ++M++ RSKG+G+V
Sbjct: 19 LEQAFGQFGAVT---------------------------SAKVMMERDTGRSKGFGFVEM 51
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
++ EAQ A+ MNG+ L GR I V+ RP
Sbjct: 52 GSDAEAQAAINGMNGQALGGRSIVVNEARP 81
>gi|238014210|gb|ACR38140.1| unknown [Zea mays]
gi|414873814|tpg|DAA52371.1| TPA: glycine-rich RNA-binding protein 8 isoform 1 [Zea mays]
gi|414873815|tpg|DAA52372.1| TPA: glycine-rich RNA-binding protein 8 isoform 2 [Zea mays]
gi|414873816|tpg|DAA52373.1| TPA: glycine-rich RNA-binding protein 8 isoform 3 [Zea mays]
Length = 205
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 50/112 (44%), Gaps = 30/112 (26%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAFS+FG +TE A +++DK RS+G+G+VTF
Sbjct: 23 LKDAFSKFGNLTE---------------------------AKVVLDKFSGRSRGFGFVTF 55
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVR---PSRRYNTDAPLARQSAQSPE 110
++ + A+ MNG LDGR I VD + P R N D R+ E
Sbjct: 56 DEKQAMEDAIEGMNGLDLDGRNITVDKAQPQGPGRDRNGDRDYDRERGSRYE 107
>gi|119177425|ref|XP_001240490.1| hypothetical protein CIMG_07653 [Coccidioides immitis RS]
gi|320032129|gb|EFW14085.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
gi|392867546|gb|EAS29215.2| hypothetical protein CIMG_07653 [Coccidioides immitis RS]
Length = 147
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV--RPS 92
A ++ D+ NRS+G+G+V F++E EA+ A+ +MN + DGR I VD RPS
Sbjct: 31 AIVVKDRDTNRSRGFGFVRFASEGEAEAAMNEMNNQEFDGRTIRVDKAADRPS 83
>gi|440577321|emb|CCI55328.1| PH01B001I13.24 [Phyllostachys edulis]
Length = 196
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 27/86 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L AF +FGQ+TE ++MD+ R +G+ ++++
Sbjct: 132 LRSAFERFGQLTE---------------------------VNLVMDRVAKRPRGFAFLSY 164
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD 87
+ EEE++ A+ M+GK LDGRVIFV+
Sbjct: 165 ANEEESKNAMEGMHGKFLDGRVIFVE 190
>gi|212276175|ref|NP_001130201.1| hypothetical protein [Zea mays]
gi|194688532|gb|ACF78350.1| unknown [Zea mays]
gi|414887483|tpg|DAA63497.1| TPA: hypothetical protein ZEAMMB73_917992 [Zea mays]
gi|414887484|tpg|DAA63498.1| TPA: hypothetical protein ZEAMMB73_917992 [Zea mays]
Length = 308
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 27/88 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAFS+FG V E A II+D+ RS+G+G++TF
Sbjct: 48 LKDAFSEFGNVLE---------------------------ARIIIDRESGRSRGFGFITF 80
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNV 89
++ EEA A+ M+GK L GR I V++
Sbjct: 81 TSTEEASAAMTSMDGKELQGRNIRVNHA 108
>gi|406956570|gb|EKD84644.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 81
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 37/53 (69%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ +A ++ D+ RS+G+G+V ST+EEAQ A+ ++NG ++GR I V+ RP
Sbjct: 25 VVSAQVVKDRETGRSRGFGFVEMSTDEEAQNAVKNLNGADVEGRKIVVNIARP 77
>gi|226491121|ref|NP_001143351.1| uncharacterized protein LOC100275970 [Zea mays]
gi|195618716|gb|ACG31188.1| hypothetical protein [Zea mays]
Length = 295
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 27/88 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAFS+FG V E A II+D+ RS+G+G++TF
Sbjct: 48 LKDAFSEFGNVLE---------------------------ARIIIDRESGRSRGFGFITF 80
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNV 89
++ EEA A+ M+GK L GR I V++
Sbjct: 81 TSTEEASAAMTSMDGKELQGRNIRVNHA 108
>gi|326319545|ref|YP_004237217.1| RNP-1 like RNA-binding protein [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323376381|gb|ADX48650.1| RNP-1 like RNA-binding protein [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 172
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L AF QFG VT +A ++M++ RSKG+G+V
Sbjct: 19 LEQAFGQFGAVT---------------------------SAKVMMERDTGRSKGFGFVEM 51
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
++ EAQ A+ MNG+ L GR I V+ RP
Sbjct: 52 GSDAEAQAAINGMNGQALGGRSIVVNEARP 81
>gi|15982739|gb|AAL09710.1| AT3g26420/F20C19_14 [Arabidopsis thaliana]
gi|19699180|gb|AAL90956.1| AT3g26420/F20C19_14 [Arabidopsis thaliana]
Length = 148
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 12 VTEDLVYFYFKSQPLFPLHYFLISDSF-----LFAATIIMDKGKNRSKGYGYVTFSTEEE 66
++ED Y F + + D+F L A +++DK RS+G+G++TF ++
Sbjct: 1 MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60
Query: 67 AQKALADMNGKLLDGRVIFVDNVRP 91
+A+A MNG LDGR I VD +P
Sbjct: 61 MDEAIAAMNGMDLDGRTITVDKAQP 85
>gi|399886791|gb|AFP52931.1| RBP1 [Hordeum vulgare]
Length = 162
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ A II D+ RS+G+G+V+FS E+ Q A+ MNGK LDGR I V+ +
Sbjct: 35 ILDAKIINDRETGRSRGFGFVSFSNEQAMQDAIEGMNGKELDGRSIVVNEAQS 87
>gi|255565552|ref|XP_002523766.1| dc50, putative [Ricinus communis]
gi|223536978|gb|EEF38615.1| dc50, putative [Ricinus communis]
Length = 210
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 36/55 (65%)
Query: 37 SFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
L A +++DK RS+G+G+VTF ++ ++A+ +MNG LDGR I VD +P
Sbjct: 31 GHLLEAKVVVDKFSGRSRGFGFVTFDEKKAMEEAIEEMNGMDLDGRTITVDKAQP 85
>gi|255944269|ref|XP_002562902.1| Pc20g03510 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587637|emb|CAP85680.1| Pc20g03510 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 151
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV--RPSR 93
A ++ D+ RS+G+G+V F+T+ EA AL MN + DGRVI VD RP R
Sbjct: 28 AIVVKDRATQRSRGFGFVRFATDAEADAALGAMNNQEFDGRVIRVDKAFDRPQR 81
>gi|45544646|ref|NP_956311.1| cold inducible RNA binding protein isoform 2 [Danio rerio]
gi|28856196|gb|AAH48027.1| Cold inducible RNA binding protein [Danio rerio]
gi|182891172|gb|AAI64022.1| Cirbp protein [Danio rerio]
Length = 184
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 34/44 (77%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+I D+ +RS+G+G+VTF E+A+ A+A MNGK +DGR+I VD
Sbjct: 36 VIRDRETDRSRGFGFVTFENPEDAKDAMAAMNGKQVDGRMIRVD 79
>gi|115489714|ref|NP_001067344.1| Os12g0632000 [Oryza sativa Japonica Group]
gi|77557139|gb|ABA99935.1| Glycine-rich RNA-binding protein GRP1A, putative, expressed
[Oryza sativa Japonica Group]
gi|113649851|dbj|BAF30363.1| Os12g0632000 [Oryza sativa Japonica Group]
gi|125580173|gb|EAZ21319.1| hypothetical protein OsJ_36973 [Oryza sativa Japonica Group]
gi|215769456|dbj|BAH01685.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 162
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
+ + II D+ RS+G+G+VTFS+E+ + A+ MNGK LDGR I V+ + R
Sbjct: 34 ILESKIINDRETGRSRGFGFVTFSSEQAMRDAIEGMNGKELDGRNITVNEAQSRR 88
>gi|357122439|ref|XP_003562923.1| PREDICTED: uncharacterized protein LOC100844345 [Brachypodium
distachyon]
Length = 206
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAF +FG VTE A +++DK RS+G+ +VTF
Sbjct: 23 LKDAFRKFGNVTE---------------------------AKVVLDKFSGRSRGFAFVTF 55
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+++ + A+ DMNG LDGR I VD +P
Sbjct: 56 DEKKDMEAAIEDMNGLDLDGRAITVDKAQP 85
>gi|108863012|gb|ABG22105.1| Glycine-rich RNA-binding protein GRP1A, putative, expressed
[Oryza sativa Japonica Group]
Length = 117
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
+ + II D+ RS+G+G+VTFS+E+ + A+ MNGK LDGR I V+ + R
Sbjct: 34 ILESKIINDRETGRSRGFGFVTFSSEQAMRDAIEGMNGKELDGRNITVNEAQSRR 88
>gi|169244425|gb|ACA50486.1| glycine-rich RNA binding protein [Oryza sativa Japonica Group]
gi|306415963|gb|ADM86856.1| glycine-rich RNA binding protein [Oryza sativa Japonica Group]
gi|385718874|gb|AFI71864.1| Glycin-rich RNA binding protein [Oryza sativa]
Length = 161
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
+ + II D+ RS+G+G+VTFS+E+ + A+ MNGK LDGR I V+ + R
Sbjct: 34 ILESKIINDRETGRSRGFGFVTFSSEQAMRDAIEGMNGKELDGRNITVNEAQSRR 88
>gi|125537516|gb|EAY84004.1| hypothetical protein OsI_39235 [Oryza sativa Indica Group]
Length = 161
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
+ + II D+ RS+G+G+VTFS+E+ + A+ MNGK LDGR I V+ + R
Sbjct: 34 ILESKIINDRETGRSRGFGFVTFSSEQAMRDAIEGMNGKELDGRNITVNEAQSRR 88
>gi|356517261|ref|XP_003527307.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Glycine max]
Length = 145
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPL 101
A ++ D+ SKG+G+V ++T E+A K + M+GK LDG VIF + RP R PL
Sbjct: 78 ARVVTDRVSGYSKGFGFVQYATIEDAAKGIEGMDGKFLDGWVIFAEYARP--RPPPGQPL 135
Query: 102 ARQSAQ 107
S+Q
Sbjct: 136 NSNSSQ 141
>gi|333917516|ref|YP_004491248.1| RNP-1 like RNA-binding protein [Delftia sp. Cs1-4]
gi|333747716|gb|AEF92893.1| RNP-1 like RNA-binding protein [Delftia sp. Cs1-4]
Length = 179
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L AFSQFG VT +A ++M++ RSKG+G+V
Sbjct: 19 LEQAFSQFGAVT---------------------------SARVMMERDTGRSKGFGFVEM 51
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
++ EAQ A+ MNG+ L GR + V+ RP
Sbjct: 52 GSDAEAQAAVQGMNGQPLGGRSLVVNEARP 81
>gi|160901478|ref|YP_001567060.1| RNP-1 like RNA-binding protein [Delftia acidovorans SPH-1]
gi|160367062|gb|ABX38675.1| RNP-1 like RNA-binding protein [Delftia acidovorans SPH-1]
Length = 176
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L AFSQFG VT +A ++M++ RSKG+G+V
Sbjct: 19 LEQAFSQFGAVT---------------------------SARVMMERDTGRSKGFGFVEM 51
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
++ EAQ A+ MNG+ L GR + V+ RP
Sbjct: 52 GSDAEAQAAVQGMNGQPLGGRSLVVNEARP 81
>gi|255730137|ref|XP_002549993.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240131950|gb|EER31508.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 442
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ A +IM++ +S+GYGYV F + A+KALA+M GK +DGR I +D
Sbjct: 241 VIGARVIMERATGKSRGYGYVDFEGKSFAEKALAEMQGKEIDGRPINLD 289
Score = 38.1 bits (87), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 54 KGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
KG+GYV FS+ +EA+ AL +NG+ ++GR +D
Sbjct: 357 KGFGYVQFSSVDEAKAALEALNGQYIEGRPCRLD 390
>gi|2331133|gb|AAB66885.1| glycine-rich protein [Oryza sativa Japonica Group]
Length = 161
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
+ + II D+ RS+G+G+VTFS+E+ + A+ MNGK LDGR I V+ + R
Sbjct: 34 ILESKIINDRETGRSRGFGFVTFSSEQAMRDAIEGMNGKELDGRNITVNEAQSRR 88
>gi|254585491|ref|XP_002498313.1| ZYRO0G07326p [Zygosaccharomyces rouxii]
gi|238941207|emb|CAR29380.1| ZYRO0G07326p [Zygosaccharomyces rouxii]
Length = 468
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 34/47 (72%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+A +I ++G RS+GYGYV F+ + A+KA+ +M+GK LDGR I D
Sbjct: 264 SARVIYERGSTRSRGYGYVDFTDKSYAEKAVKEMHGKELDGRPINCD 310
Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 54 KGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
KG+GYV +++ + AQKAL + G+ +D R + +D
Sbjct: 378 KGFGYVQYASVDSAQKALETLQGEYIDNRPVRLD 411
>gi|296811816|ref|XP_002846246.1| glycine-rich RNA-binding protein [Arthroderma otae CBS 113480]
gi|238843634|gb|EEQ33296.1| glycine-rich RNA-binding protein [Arthroderma otae CBS 113480]
Length = 133
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 40/86 (46%), Gaps = 27/86 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L D FS+FG + E A ++ D+ NRS+G+G+V F
Sbjct: 20 LRDGFSKFGTIEE---------------------------AIVVKDRDTNRSRGFGFVRF 52
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD 87
S E EA AL MN + DGRVI VD
Sbjct: 53 SNESEADAALNAMNNQEFDGRVIRVD 78
>gi|255556984|ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223541388|gb|EEF42939.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 280
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 29 LHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD- 87
L F + A ++ D+ RS+G+G+VT+S+ EE + A+ +NG LDGR I V
Sbjct: 212 LESFFSEQGKVVDAKVVYDRESGRSRGFGFVTYSSAEEVENAIDSLNGAELDGRAIRVSV 271
Query: 88 -NVRPSRRY 95
RP R++
Sbjct: 272 AEARPRRQF 280
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNT 97
+I DK RS+G+G+VT S+ +E + A NG L+GR + V++ P +R ++
Sbjct: 123 VIYDKVTGRSRGFGFVTMSSIDEVEAAAQQFNGYELEGRALRVNSGPPPQRESS 176
>gi|168034678|ref|XP_001769839.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678948|gb|EDQ65401.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 133
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 27/86 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAFS FG VTE II+D+ RS+G+G+V F
Sbjct: 61 LRDAFSSFGTVTE---------------------------VKIILDRDTGRSRGFGFVNF 93
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD 87
++ EEA+ AL +M+G+ L GR I VD
Sbjct: 94 TSPEEAEVALQEMDGRELAGRQIRVD 119
>gi|395005503|ref|ZP_10389380.1| RRM domain-containing RNA-binding protein, partial [Acidovorax
sp. CF316]
gi|394316556|gb|EJE53277.1| RRM domain-containing RNA-binding protein, partial [Acidovorax
sp. CF316]
Length = 110
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L AF QFG VT +A ++M++ RSKG+G+V
Sbjct: 19 LEQAFGQFGAVT---------------------------SAKVMMERDTGRSKGFGFVEM 51
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
++ EAQ A+ MNG+ L GR I V+ RP
Sbjct: 52 GSDPEAQAAINGMNGQPLGGRSIVVNEARP 81
>gi|327271804|ref|XP_003220677.1| PREDICTED: embryonic polyadenylate-binding protein-like [Anolis
carolinensis]
Length = 635
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 39 LFAATI---IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRY 95
+F T+ +M RSKG+G+V F ++AQKA+ DMNGK ++GR+++V R +R
Sbjct: 213 IFGKTLSVKVMTDNIGRSKGFGFVNFEKHQDAQKAVEDMNGKEINGRMLYVG--RAQKRM 270
Query: 96 NTDAPLARQSAQSPEE 111
+ L R+ Q +E
Sbjct: 271 ERQSELKRKFEQIKQE 286
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
+ + ++ D+ N S+GYG+V F T E A +A+A MNG LL+ R +FV N + SRR
Sbjct: 125 ILSCKVVCDE--NGSRGYGFVHFETHEAANRAIATMNGMLLNDRKVFVGNFK-SRR 177
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +G SKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 325 VMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
>gi|195155759|ref|XP_002018768.1| GL25979 [Drosophila persimilis]
gi|194114921|gb|EDW36964.1| GL25979 [Drosophila persimilis]
Length = 289
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 35/57 (61%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNT 97
A +IMD NRSKGYG++T+ E+A+KAL +NG L GR + V NV NT
Sbjct: 57 AIQLIMDTETNRSKGYGFITYHNAEDAKKALEQLNGFELAGRPMKVGNVTERLDMNT 113
>gi|218193471|gb|EEC75898.1| hypothetical protein OsI_12955 [Oryza sativa Indica Group]
Length = 139
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
+ + II D+ RS+G+G+VTFS+E+ + A+ MNGK LDGR I V+ + R
Sbjct: 34 ILDSKIINDRETGRSRGFGFVTFSSEQSMRDAIEGMNGKELDGRNITVNEAQSRR 88
>gi|365760560|gb|EHN02272.1| Nsr1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 371
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 34/49 (69%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ +A +I ++G +RS+GYGYV F + A+KA+ +M GK +DGR I D
Sbjct: 167 VISARVINERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCD 215
Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 54 KGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
KG+GYV FS+ E+++KAL + G+ +D R + +D P R N D
Sbjct: 283 KGFGYVQFSSLEDSKKALESLQGEYIDNRPVRLDYSSP--RPNND 325
>gi|395545876|ref|XP_003774823.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 621
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 34/42 (80%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M + RSKG+G+V+++T E+AQ+A+ +MNGK L+GR I+V
Sbjct: 213 VMTDERGRSKGFGFVSYATHEDAQRAVDEMNGKELNGRRIYV 254
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G S+G+G+V FS +EA KA+ +MNGKL+ + ++V
Sbjct: 311 ITSAKVMMEGG--HSRGFGFVCFSAPDEAAKAVTEMNGKLVTSKPLYV 356
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 88
+ + ++ D+ N SKGYG+V F T+E A+KA+ MNG +L +FV +
Sbjct: 116 ILSCKVVSDE--NGSKGYGFVHFETQESAEKAIEKMNGIVLKSLKVFVGH 163
>gi|351725255|ref|NP_001236574.1| uncharacterized protein LOC100527220 [Glycine max]
gi|255631812|gb|ACU16273.1| unknown [Glycine max]
Length = 138
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 43/92 (46%), Gaps = 29/92 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAFS FG V + A +I D+ RS+G+G+V F
Sbjct: 52 LKDAFSGFGDVVD---------------------------AKVITDRDSGRSRGFGFVNF 84
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD--NVRP 91
S +E A AL+ M+GK LDGR I V N RP
Sbjct: 85 SNDESASSALSAMDGKDLDGRSIRVSYANDRP 116
>gi|15239676|ref|NP_200269.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|9758950|dbj|BAB09337.1| unnamed protein product [Arabidopsis thaliana]
gi|18175762|gb|AAL59923.1| unknown protein [Arabidopsis thaliana]
gi|20465513|gb|AAM20239.1| unknown protein [Arabidopsis thaliana]
gi|21553374|gb|AAM62467.1| unknown [Arabidopsis thaliana]
gi|332009129|gb|AED96512.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 156
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
A ++ D+ SKG+G+V ++T E++ K +A M+GK LDG VIF + RP
Sbjct: 85 AKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARP 134
>gi|407941455|ref|YP_006857096.1| RNP-1 like RNA-binding protein [Acidovorax sp. KKS102]
gi|407899249|gb|AFU48458.1| RNP-1 like RNA-binding protein [Acidovorax sp. KKS102]
Length = 188
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L AF QFG VT +A ++M++ RSKG+G+V
Sbjct: 19 LEQAFGQFGAVT---------------------------SAKVMMERDTGRSKGFGFVEM 51
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
++ EAQ A+ MNG+ L GR I V+ RP
Sbjct: 52 GSDAEAQAAINGMNGQPLGGRSIVVNEARP 81
>gi|259486065|tpe|CBF83611.1| TPA: glycine-rich RNA-binding protein, putative (AFU_orthologue;
AFUA_3G08580) [Aspergillus nidulans FGSC A4]
Length = 128
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV--RPSRR 94
A ++ D+ NRS+G+G+V F++E EA A+ MN + DGR+I VD RP+ R
Sbjct: 31 AVVVKDRDTNRSRGFGFVRFASEPEADAAMGAMNNQEFDGRIIRVDKASERPAAR 85
>gi|357152187|ref|XP_003576037.1| PREDICTED: glycine-rich RNA-binding protein blt801-like
[Brachypodium distachyon]
Length = 102
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ A +I D+ RS+G+G+VTF+TE+ Q A+ MNGK +DGR I V+
Sbjct: 30 ILDAKVIPDRETGRSRGFGFVTFTTEQAMQNAINAMNGKDIDGRTISVN 78
>gi|18103931|emb|CAC83314.1| glycine rich RNA binding protein [Oryza sativa Indica Group]
Length = 194
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
+ + II D+ RS+G+G+VTFS+E+ + A+ MNGK LDGR I V+ + R
Sbjct: 34 ILESKIINDRETGRSRGFGFVTFSSEQAMRDAIEGMNGKELDGRNITVNEAQSRR 88
>gi|315057077|ref|XP_003177913.1| hypothetical protein MGYG_01973 [Arthroderma gypseum CBS 118893]
gi|311339759|gb|EFQ98961.1| hypothetical protein MGYG_01973 [Arthroderma gypseum CBS 118893]
Length = 152
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 27/86 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L + FSQFG + E A ++ D+ NRS+G+G+V F
Sbjct: 20 LREGFSQFGTIEE---------------------------AIVVKDRDTNRSRGFGFVRF 52
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD 87
S+E EA AL MN + DGRVI VD
Sbjct: 53 SSEAEADAALNAMNNQEFDGRVIRVD 78
>gi|15231817|ref|NP_190914.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|186511018|ref|NP_850692.2| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|334185948|ref|NP_001190078.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|30316379|sp|Q43349.2|ROC2_ARATH RecName: Full=29 kDa ribonucleoprotein, chloroplastic; AltName:
Full=RNA-binding protein cp29; Flags: Precursor
gi|6729497|emb|CAB67653.1| RNA-binding protein cp29 protein [Arabidopsis thaliana]
gi|14532570|gb|AAK64013.1| AT3g53460/F4P12_160 [Arabidopsis thaliana]
gi|18655393|gb|AAL76152.1| AT3g53460/F4P12_160 [Arabidopsis thaliana]
gi|21593426|gb|AAM65393.1| RNA-binding protein cp29 protein [Arabidopsis thaliana]
gi|332645568|gb|AEE79089.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|332645569|gb|AEE79090.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|332645570|gb|AEE79091.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
Length = 342
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSR 93
A +I D+ RSKG+G+VT S+ +E QKA+ +NG LDGR I V RP R
Sbjct: 286 ARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPR 339
>gi|681904|dbj|BAA06519.1| RNA-binding protein cp29 [Arabidopsis thaliana]
Length = 326
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSR 93
A +I D+ RSKG+G+VT S+ +E QKA+ +NG LDGR I V RP R
Sbjct: 270 ARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPR 323
>gi|681902|dbj|BAA06518.1| RNA-binding protein cp29 [Arabidopsis thaliana]
Length = 334
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSR 93
A +I D+ RSKG+G+VT S+ +E QKA+ +NG LDGR I V RP R
Sbjct: 278 ARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPR 331
>gi|401842356|gb|EJT44580.1| NSR1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 393
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 34/49 (69%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ +A +I ++G +RS+GYGYV F + A+KA+ +M GK +DGR I D
Sbjct: 167 VISARVINERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCD 215
Score = 37.4 bits (85), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 54 KGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
KG+GYV FS+ E+++KAL + G+ +D R + +D P R N D
Sbjct: 283 KGFGYVQFSSLEDSKKALESLQGEYIDNRPVRLDYSSP--RPNND 325
>gi|223973531|gb|ACN30953.1| unknown [Zea mays]
Length = 184
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 32/109 (29%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L +AFS FG+VTE A +I D+ RS+G+G+V +
Sbjct: 53 LREAFSSFGEVTE---------------------------ARVITDRETGRSRGFGFVNY 85
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD--NVRPSRRYNTDAPLARQSAQS 108
S + A++A++ M+GK +DGR + V+ N RP R + +P R +A S
Sbjct: 86 SDSDAAKEAISAMDGKEIDGRQVRVNMANERPLR---STSPPTRAAAAS 131
>gi|126342190|ref|XP_001379497.1| PREDICTED: polyadenylate-binding protein 1 [Monodelphis domestica]
Length = 669
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
+M RSKG+G+V+F + E+AQ A+ DMNGK L+G+ I+V + R T+
Sbjct: 256 VMTDDCGRSKGFGFVSFQSHEDAQAAVDDMNGKQLNGKQIYVGRAQKKRERQTE 309
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
+ + +I D+ N SKGYG+V F T+E A KA+ MNG LL+ +FV + SRR
Sbjct: 159 ILSCKVISDE--NGSKGYGFVHFETQESAGKAIEKMNGMLLNNLKVFVGRFK-SRR 211
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ ++A KA +MNGKL+ + ++V
Sbjct: 354 ITSAKVMMENG--RSKGFGFVCFSSSKDAAKASREMNGKLVASKPLYV 399
>gi|297792921|ref|XP_002864345.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297310180|gb|EFH40604.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 156
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
A ++ D+ SKG+G+V ++T E++ K +A M+GK LDG VIF + RP
Sbjct: 85 AKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARP 134
>gi|168034546|ref|XP_001769773.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678882|gb|EDQ65335.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 134
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 27/86 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAFS FG VTE II+D+ RS+G+G+V F
Sbjct: 62 LRDAFSSFGTVTE---------------------------VKIILDRDTGRSRGFGFVNF 94
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD 87
++ EEA+ AL +M+G+ L GR I VD
Sbjct: 95 TSPEEAEVALQEMDGRELAGRQIRVD 120
>gi|297820076|ref|XP_002877921.1| hypothetical protein ARALYDRAFT_348440 [Arabidopsis lyrata subsp.
lyrata]
gi|297323759|gb|EFH54180.1| hypothetical protein ARALYDRAFT_348440 [Arabidopsis lyrata subsp.
lyrata]
Length = 339
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSR 93
A +I D+ RSKG+G+VT S+ +E QKA+ +NG LDGR I V RP R
Sbjct: 283 ARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPR 336
>gi|241766569|ref|ZP_04764426.1| RNP-1 like RNA-binding protein [Acidovorax delafieldii 2AN]
gi|241363173|gb|EER58764.1| RNP-1 like RNA-binding protein [Acidovorax delafieldii 2AN]
Length = 116
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L AF QFG VT +A ++M++ RSKG+G+V
Sbjct: 19 LEQAFGQFGAVT---------------------------SAKVMMERDTGRSKGFGFVEM 51
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
++ EAQ A+ MNG+ L GR I V+ RP
Sbjct: 52 GSDAEAQAAINGMNGQPLGGRSIVVNEARP 81
>gi|171056877|ref|YP_001789226.1| RNP-1 like RNA-binding protein [Leptothrix cholodnii SP-6]
gi|170774322|gb|ACB32461.1| RNP-1 like RNA-binding protein [Leptothrix cholodnii SP-6]
Length = 157
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L +AFSQFG V +A ++MD+ RSKG+G+V
Sbjct: 19 LNEAFSQFGAVN---------------------------SAKVMMDRETGRSKGFGFVEM 51
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
++ EAQ A+ +NG+ + GR I V+ RP
Sbjct: 52 GSDPEAQAAINGLNGQAIGGRAIVVNEARP 81
>gi|365986018|ref|XP_003669841.1| hypothetical protein NDAI_0D02840 [Naumovozyma dairenensis CBS 421]
gi|343768610|emb|CCD24598.1| hypothetical protein NDAI_0D02840 [Naumovozyma dairenensis CBS 421]
Length = 426
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ A +I ++G +RS+GYGYV F + A+KA+ +M GK +DGR I VD
Sbjct: 197 VVGARVIYERGTDRSRGYGYVDFEDKSYAEKAIQEMQGKEIDGRPINVD 245
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 54 KGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
KG+GYV FS E+A+KAL + G+ +D R + +D P
Sbjct: 311 KGFGYVQFSNIEDAKKALEGLQGEYIDNRAVRLDYSTP 348
>gi|334185950|ref|NP_001190079.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|332645571|gb|AEE79092.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
Length = 363
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSR 93
A +I D+ RSKG+G+VT S+ +E QKA+ +NG LDGR I V RP R
Sbjct: 307 ARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPR 360
>gi|121607153|ref|YP_994960.1| RNP-1 like RNA-binding protein [Verminephrobacter eiseniae
EF01-2]
gi|121551793|gb|ABM55942.1| RNP-1 like RNA-binding protein [Verminephrobacter eiseniae
EF01-2]
Length = 175
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+A ++M++ RSKG+G+V ++ EAQ A+ MNG+ L GR I V+ RP
Sbjct: 31 SAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQPLGGRSIVVNEARP 81
>gi|406965367|gb|EKD91001.1| Glycine-rich RNA-binding protein [uncultured bacterium]
Length = 87
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 35/53 (66%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ AT++ D+ RS+G+G+V F+ + + KA+ +MNG +DGR I V+ RP
Sbjct: 32 IIQATVLKDRQTGRSRGFGFVEFANDADGDKAIQEMNGADMDGRNIVVNEARP 84
>gi|334312764|ref|XP_003339775.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
1-like [Monodelphis domestica]
Length = 614
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +S+G+G+V F EEAQKA+++MNGK L GRV++V R +R + L R+
Sbjct: 222 VMVDENGQSRGFGFVNFEKHEEAQKAVSNMNGKELGGRVLYVG--RAQKRSERQSELKRR 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQMKQE 286
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 90
+ + ++ D+ N S+G+G+V F T E A +A+ MNG LL+ R +FV + +
Sbjct: 125 ILSCKVVCDE--NGSRGFGFVHFETHEAANQAINTMNGMLLNDRKVFVGHFK 174
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + +M +G SKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 319 VITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
>gi|226532482|ref|NP_001150574.1| glycine-rich RNA-binding protein 7 [Zea mays]
gi|195640298|gb|ACG39617.1| glycine-rich RNA-binding protein 7 [Zea mays]
Length = 253
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 36/51 (70%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89
+ A II+D+ RS+G+G++T+++ EEA A+ M+GK LDGR I V++
Sbjct: 60 VIEAKIILDRESGRSRGFGFITYTSSEEASAAITAMDGKTLDGRNIRVNHA 110
>gi|297827229|ref|XP_002881497.1| hypothetical protein ARALYDRAFT_482714 [Arabidopsis lyrata subsp.
lyrata]
gi|297327336|gb|EFH57756.1| hypothetical protein ARALYDRAFT_482714 [Arabidopsis lyrata subsp.
lyrata]
Length = 289
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSRR 94
A +I D+ RSKG+G+VT+++ +E Q A+ +NG LDGR I V RP RR
Sbjct: 233 ARVIYDRDSGRSKGFGFVTYNSSQEVQNAINSLNGADLDGRQIRVSEAEARPPRR 287
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+I DK RS+G+G+VT S+ E + A NG LDGR + V+ P
Sbjct: 122 VIYDKVTGRSRGFGFVTMSSVSEVEAAANQFNGYELDGRPLRVNAGPP 169
>gi|312283439|dbj|BAJ34585.1| unnamed protein product [Thellungiella halophila]
Length = 259
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 12 VTEDLVYFYFKSQPLFPLHYFLISDSF-----LFAATIIMDKGKNRSKGYGYVTFSTEEE 66
++ED Y F + + D+F L A +++DK RS+G+G++TF ++
Sbjct: 1 MSEDPEYRCFIGGLAWSTSDRGLRDAFEKYGHLLEAKVVLDKFSGRSRGFGFITFDEKKA 60
Query: 67 AQKALADMNGKLLDGRVIFVDNVRP 91
+A+A MNG LDGR I VD +P
Sbjct: 61 MDEAIAAMNGMDLDGRTITVDKAQP 85
>gi|67525063|ref|XP_660593.1| hypothetical protein AN2989.2 [Aspergillus nidulans FGSC A4]
gi|40744384|gb|EAA63560.1| hypothetical protein AN2989.2 [Aspergillus nidulans FGSC A4]
Length = 118
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV--RPSRR 94
A ++ D+ NRS+G+G+V F++E EA A+ MN + DGR+I VD RP+ R
Sbjct: 31 AVVVKDRDTNRSRGFGFVRFASEPEADAAMGAMNNQEFDGRIIRVDKASERPAAR 85
>gi|303316410|ref|XP_003068207.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240107888|gb|EER26062.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320037953|gb|EFW19889.1| ribosome biogenesis protein Nop4 [Coccidioides posadasii str.
Silveira]
Length = 751
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 13/83 (15%)
Query: 12 VTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKAL 71
TE L ++ +S +P+ + AT + D + KGYG+VTF+ E+AQ+AL
Sbjct: 58 TTESLTEYFSQS---YPIKH----------ATAVADPQTKQCKGYGFVTFADVEDAQRAL 104
Query: 72 ADMNGKLLDGRVIFVDNVRPSRR 94
++NG + DGR + ++ P R
Sbjct: 105 GELNGSVFDGRKLKIEVAEPRHR 127
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+I KG +R G+G+V ++ A+KAL +NGK +DGR + VD
Sbjct: 190 VIPKKG-SRHAGFGFVVMRGKKNAEKALEGVNGKEVDGRTLAVD 232
>gi|119188303|ref|XP_001244758.1| hypothetical protein CIMG_04199 [Coccidioides immitis RS]
gi|392871470|gb|EAS33387.2| ribosome biogenesis protein [Coccidioides immitis RS]
Length = 751
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 13/83 (15%)
Query: 12 VTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKAL 71
TE L ++ +S +P+ + AT + D + KGYG+VTF+ E+AQ+AL
Sbjct: 58 TTESLTEYFSQS---YPIKH----------ATAVADPQTKQCKGYGFVTFADVEDAQRAL 104
Query: 72 ADMNGKLLDGRVIFVDNVRPSRR 94
++NG + DGR + ++ P R
Sbjct: 105 GELNGSVFDGRKLKIEVAEPRHR 127
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+I KG +R G+G+V ++ A+KAL +NGK +DGR + VD
Sbjct: 190 VIPKKG-SRHAGFGFVVMRGKKNAEKALEGVNGKEVDGRTLAVD 232
>gi|167383625|ref|XP_001736605.1| cold-inducible RNA-binding protein [Entamoeba dispar SAW760]
gi|165900936|gb|EDR27150.1| cold-inducible RNA-binding protein, putative [Entamoeba dispar
SAW760]
Length = 138
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
++ D+ RSKG+G+VTF +E+A+KA+ +MN + L+GR I VD +P
Sbjct: 31 CKVVTDRESQRSKGFGFVTFEKDEDAKKAIEEMNEQELEGRRIKVDVSKP 80
>gi|119357086|ref|YP_911730.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides DSM
266]
gi|119354435|gb|ABL65306.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides DSM
266]
Length = 90
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAFSQFGQV +A II DK RSKG+G++
Sbjct: 17 LRDAFSQFGQVD---------------------------SANIINDKFSGRSKGFGFIEM 49
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
S + EA++A+ MN + L GR I V+ +P
Sbjct: 50 SNDSEAREAIESMNDQDLKGRTIKVNEAKP 79
>gi|253181|gb|AAB22809.1| NSR1=nucleolin homolog [Saccharomyces cerevisiae, Peptide, 249
aa]
Length = 249
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ A +I ++G +RS+GYGYV F + A+KA+ +M GK +DGR I D
Sbjct: 29 VIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCD 77
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 54 KGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
KG+GYV FS E+A+KAL + G+ +D R + +D P R N D
Sbjct: 143 KGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSP--RPNND 185
>gi|363543257|ref|NP_001241843.1| uncharacterized protein LOC100857047 [Zea mays]
gi|238007748|gb|ACR34909.1| unknown [Zea mays]
gi|413916459|gb|AFW56391.1| putative glycine-rich protein [Zea mays]
Length = 261
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 36/51 (70%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89
+ A II+D+ RS+G+G++T+++ EEA A+ M+GK LDGR I V++
Sbjct: 57 VIEAKIILDRESGRSRGFGFITYTSSEEASAAITAMDGKTLDGRNIRVNHA 107
>gi|209155104|gb|ACI33784.1| Cold-inducible RNA-binding protein [Salmo salar]
gi|223648252|gb|ACN10884.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 167
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 27/91 (29%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L D FS++GQ++E +I D+ RS+G+G+VTF
Sbjct: 21 LEDVFSKYGQISE---------------------------VVVIKDRETQRSRGFGFVTF 53
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
+EA+ A+ MNGK LDGR I VD S
Sbjct: 54 ENPDEAKDAMLAMNGKSLDGRQIRVDQAGKS 84
>gi|388566786|ref|ZP_10153228.1| RNA recognition motif-containing protein [Hydrogenophaga sp. PBC]
gi|388265964|gb|EIK91512.1| RNA recognition motif-containing protein [Hydrogenophaga sp. PBC]
Length = 133
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+A ++M++ RSKG+G+V ++ EAQ A+ MNG+ L GR + V+ RP
Sbjct: 31 SAKVMMERETGRSKGFGFVEMGSDSEAQSAIQGMNGQSLGGRSLVVNEARP 81
>gi|297814870|ref|XP_002875318.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321156|gb|EFH51577.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 247
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 12 VTEDLVYFYFKSQPLFPLHYFLISDSF-----LFAATIIMDKGKNRSKGYGYVTFSTEEE 66
++ED Y F + + D+F L A +++DK RS+G+G++TF ++
Sbjct: 1 MSEDPEYRCFIGGLAWSTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60
Query: 67 AQKALADMNGKLLDGRVIFVDNVRP 91
+A+A MNG LDGR I VD +P
Sbjct: 61 MDEAIAAMNGMDLDGRTITVDKAQP 85
>gi|196232841|ref|ZP_03131691.1| RNP-1 like RNA-binding protein [Chthoniobacter flavus Ellin428]
gi|196223040|gb|EDY17560.1| RNP-1 like RNA-binding protein [Chthoniobacter flavus Ellin428]
Length = 107
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
AT++ DK +S+G+G+VT S+ EEAQKA+ +GK + GR + V+ RP
Sbjct: 32 ATLMQDKFTGKSRGFGFVTMSSSEEAQKAIDLFHGKTVQGRALTVNEARP 81
>gi|116780918|gb|ABK21879.1| unknown [Picea sitchensis]
Length = 172
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 27/86 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAFS FG++ E + II D+ RS+G+G+VTF
Sbjct: 25 LQDAFSPFGEILE---------------------------SKIISDRETGRSRGFGFVTF 57
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD 87
S E+ + A+ MNGK+LDGR I V+
Sbjct: 58 SDEQSMRDAIDAMNGKVLDGRNITVN 83
>gi|351731832|ref|ZP_08949523.1| RNP-1 like RNA-binding protein [Acidovorax radicis N35]
Length = 177
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L AF QFG VT +A ++M++ RSKG+G+V
Sbjct: 19 LEQAFGQFGAVT---------------------------SAKVMMERDTGRSKGFGFVEM 51
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ EAQ A+ MNG+ L GR I V+ RP
Sbjct: 52 GNDAEAQAAINGMNGQPLGGRSIVVNEARP 81
>gi|259146662|emb|CAY79919.1| Nsr1p [Saccharomyces cerevisiae EC1118]
Length = 414
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ A +I ++G +RS+GYGYV F + A+KA+ +M GK +DGR I D
Sbjct: 194 VIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCD 242
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 54 KGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
KG+GYV FS E+A+KAL + G+ +D R + +D P R N D
Sbjct: 308 KGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSP--RPNND 350
>gi|190406825|gb|EDV10092.1| nuclear localization sequence binding protein [Saccharomyces
cerevisiae RM11-1a]
gi|207345058|gb|EDZ72003.1| YGR159Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256272028|gb|EEU07041.1| Nsr1p [Saccharomyces cerevisiae JAY291]
gi|323354844|gb|EGA86677.1| Nsr1p [Saccharomyces cerevisiae VL3]
gi|365765431|gb|EHN06939.1| Nsr1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 416
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ A +I ++G +RS+GYGYV F + A+KA+ +M GK +DGR I D
Sbjct: 196 VIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCD 244
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 54 KGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
KG+GYV FS E+A+KAL + G+ +D R + +D P R N D
Sbjct: 310 KGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSP--RPNND 352
>gi|151943436|gb|EDN61747.1| nuclear localization sequence binding protein [Saccharomyces
cerevisiae YJM789]
Length = 418
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ A +I ++G +RS+GYGYV F + A+KA+ +M GK +DGR I D
Sbjct: 198 VIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCD 246
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 54 KGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
KG+GYV FS E+A+KAL + G+ +D R + +D P R N D
Sbjct: 312 KGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSP--RPNND 354
>gi|349578366|dbj|GAA23532.1| K7_Nsr1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 416
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ A +I ++G +RS+GYGYV F + A+KA+ +M GK +DGR I D
Sbjct: 196 VIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCD 244
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 54 KGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
KG+GYV FS E+A+KAL + G+ +D R + +D P R N D
Sbjct: 310 KGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSP--RPNND 352
>gi|115474735|ref|NP_001060964.1| Os08g0139000 [Oryza sativa Japonica Group]
gi|38636774|dbj|BAD03017.1| putative RNA recognition motif (RRM)-containing protein [Oryza
sativa Japonica Group]
gi|113622933|dbj|BAF22878.1| Os08g0139000 [Oryza sativa Japonica Group]
gi|215767574|dbj|BAG99802.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222639884|gb|EEE68016.1| hypothetical protein OsJ_25986 [Oryza sativa Japonica Group]
Length = 141
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 11/71 (15%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPL 101
A ++ D+ SKG+G+V ++T E+A K + M+GK LDG VIF + RP
Sbjct: 65 ARVVTDRVTGFSKGFGFVRYATVEDAAKGIEGMDGKFLDGWVIFAEYARP---------- 114
Query: 102 ARQSAQSPEEN 112
R Q PE N
Sbjct: 115 -RTPPQQPEMN 124
>gi|6321599|ref|NP_011675.1| Nsr1p [Saccharomyces cerevisiae S288c]
gi|128576|sp|P27476.1|NSR1_YEAST RecName: Full=Nuclear localization sequence-binding protein;
AltName: Full=p67
gi|4058|emb|CAA40472.1| nuclear localization sequence binding protein [Saccharomyces
cerevisiae]
gi|1045265|emb|CAA59817.1| NSR1 [Saccharomyces cerevisiae]
gi|1323271|emb|CAA97173.1| NSR1 [Saccharomyces cerevisiae]
gi|285812350|tpg|DAA08250.1| TPA: Nsr1p [Saccharomyces cerevisiae S288c]
gi|392299413|gb|EIW10507.1| Nsr1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 414
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ A +I ++G +RS+GYGYV F + A+KA+ +M GK +DGR I D
Sbjct: 194 VIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCD 242
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 54 KGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
KG+GYV FS E+A+KAL + G+ +D R + +D P R N D
Sbjct: 308 KGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSP--RPNND 350
>gi|357122488|ref|XP_003562947.1| PREDICTED: uncharacterized RNA-binding protein C25G10.01-like
[Brachypodium distachyon]
Length = 138
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 32/108 (29%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L +AFS+FGQVTE A +I D+ S+G+G+V +
Sbjct: 56 LREAFSKFGQVTE---------------------------ARVITDRISGYSRGFGFVKY 88
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQSAQSP 109
+T EEA + + M+GK LDG VIF + + +A QSA +P
Sbjct: 89 ATVEEAGEGIKGMDGKFLDGWVIFAEYAK-----QREAQQPPQSAGTP 131
>gi|299529236|ref|ZP_07042680.1| RNA recognition motif-containing protein [Comamonas testosteroni
S44]
gi|298722760|gb|EFI63673.1| RNA recognition motif-containing protein [Comamonas testosteroni
S44]
Length = 83
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 30 HYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89
H+ D + AA +I+D+ RS+G+G+V T+E+AQKA+ +N + L GR + V
Sbjct: 22 HFGCCGD--VVAADVIIDRDTGRSRGFGFVEMGTQEQAQKAIETLNDQPLGGRALGVALA 79
Query: 90 RPSR 93
RP +
Sbjct: 80 RPRK 83
>gi|397642327|gb|EJK75167.1| hypothetical protein THAOC_03118, partial [Thalassiosira oceanica]
Length = 452
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 9/74 (12%)
Query: 34 ISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
++D FL M++G +R +G+G+VT ST + A+ A+A M+ LDGR I V+ RP
Sbjct: 45 VTDVFL-----PMERGTSRPRGFGFVTLSTRQAAEDAIAKMDQSQLDGRTIRVNESRP-- 97
Query: 94 RYNTDAPLARQSAQ 107
+ P AR+S +
Sbjct: 98 --RGEGPGARRSNE 109
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 30 HYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89
Y +SD FL + D+ R +G+ +VT +E A+ A +NG LDGR + V+
Sbjct: 150 QYGTVSDCFLPS-----DRDTGRPRGFAFVTMPAKE-AETACNKVNGMELDGRTVRVNEA 203
Query: 90 RP 91
+P
Sbjct: 204 QP 205
>gi|224059014|ref|XP_002299678.1| predicted protein [Populus trichocarpa]
gi|222846936|gb|EEE84483.1| predicted protein [Populus trichocarpa]
Length = 147
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
L A +++DK RS+G+G+VTF ++ + A+ MNG LDGR I VD +P
Sbjct: 33 LLEAKVVVDKFSGRSRGFGFVTFDEKKAMEDAIEGMNGMDLDGRTITVDKAQP 85
>gi|156048606|ref|XP_001590270.1| hypothetical protein SS1G_09035 [Sclerotinia sclerotiorum 1980]
gi|154693431|gb|EDN93169.1| hypothetical protein SS1G_09035 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 753
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 33 LISDSF-LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
L SD++ L AT+++D +SKGYG+VTF+ E+AQ+AL + NG+ GR + ++ +P
Sbjct: 59 LFSDNYPLKHATVVLDPVTKQSKGYGFVTFADAEDAQRALDEFNGQSFQGRKMKIEIAQP 118
Query: 92 SRRYNTDA------PLARQSAQSPE 110
R P+ R+SA + E
Sbjct: 119 RSRETIAKSGEEGLPVKRKSAIATE 143
Score = 37.7 bits (86), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
AT+ KGK G+G++ ++ A+KALA +NG+ +DGR + VD
Sbjct: 192 ATLPKVKGK--EAGFGFIVMRGKKNAEKALAAVNGREIDGRQLAVD 235
>gi|15231557|ref|NP_189273.1| RNA recognition motif and CCHC-type zinc finger domain-containing
protein [Arabidopsis thaliana]
gi|15983477|gb|AAL11606.1|AF424613_1 AT3g26420/F20C19_14 [Arabidopsis thaliana]
gi|9294301|dbj|BAB02203.1| unnamed protein product [Arabidopsis thaliana]
gi|15451066|gb|AAK96804.1| Unknown protein [Arabidopsis thaliana]
gi|18377412|gb|AAL66872.1| unknown protein [Arabidopsis thaliana]
gi|62320797|dbj|BAD93728.1| RNA-binding protein [Arabidopsis thaliana]
gi|110742443|dbj|BAE99140.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|332643635|gb|AEE77156.1| RNA recognition motif and CCHC-type zinc finger domain-containing
protein [Arabidopsis thaliana]
Length = 245
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 12 VTEDLVYFYFKSQPLFPLHYFLISDSF-----LFAATIIMDKGKNRSKGYGYVTFSTEEE 66
++ED Y F + + D+F L A +++DK RS+G+G++TF ++
Sbjct: 1 MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60
Query: 67 AQKALADMNGKLLDGRVIFVDNVRP 91
+A+A MNG LDGR I VD +P
Sbjct: 61 MDEAIAAMNGMDLDGRTITVDKAQP 85
>gi|121606987|ref|YP_984316.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans
CJ2]
gi|120595956|gb|ABM39395.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans
CJ2]
Length = 152
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 36/53 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ +A ++M++ RSKG+G+V +++ EAQ A+ MNG+ L GR + V+ RP
Sbjct: 29 VTSAKVMMERDTGRSKGFGFVEMASDAEAQAAINGMNGQPLGGRSVVVNEARP 81
>gi|212546539|ref|XP_002153423.1| glycine-rich RNA-binding protein, putative [Talaromyces marneffei
ATCC 18224]
gi|210064943|gb|EEA19038.1| glycine-rich RNA-binding protein, putative [Talaromyces marneffei
ATCC 18224]
Length = 135
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 32/46 (69%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
A +I D+ NRS+G+G+V FST+ EA A+ MN + DGRVI VD
Sbjct: 31 AIVIKDRDTNRSRGFGFVRFSTDAEADAAIEGMNNQDFDGRVIRVD 76
>gi|392882418|gb|AFM90041.1| cold-inducible RNA-binding protein-like protein [Callorhinchus
milii]
gi|392884370|gb|AFM91017.1| cold-inducible RNA-binding protein-like protein [Callorhinchus
milii]
Length = 178
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLAR 103
+I ++ RSKG+G+VTF ++A+ ALA MNGK +DGR I VD+ S + + +
Sbjct: 36 VIRERDTQRSKGFGFVTFENPDDARDALAGMNGKTVDGRQIRVDHAGKS---SGNRSRSY 92
Query: 104 QSAQS 108
QS QS
Sbjct: 93 QSGQS 97
>gi|367015628|ref|XP_003682313.1| hypothetical protein TDEL_0F02910 [Torulaspora delbrueckii]
gi|359749975|emb|CCE93102.1| hypothetical protein TDEL_0F02910 [Torulaspora delbrueckii]
Length = 436
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 35/49 (71%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ +A +I ++G +RS+GYGYV F + A+KA+ +M+GK +DGR I D
Sbjct: 213 VVSARVIYERGTDRSRGYGYVDFEDKSYAEKAVKEMHGKEIDGRPINCD 261
>gi|20257707|gb|AAM16019.1| glycine-rich RNA binding protein [Zea mays]
Length = 154
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 35/53 (66%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ + II+D+ RS+G+G+VTFS E+ + A+ MNGK LDGR I V+ +
Sbjct: 43 VLESKIILDRETQRSRGFGFVTFSXEDAMRSAIEGMNGKELDGRNITVNEAQS 95
>gi|452822390|gb|EME29410.1| RNA-binding protein [Galdieria sulphuraria]
Length = 106
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
A ++MD+ RS+G+G+VTF + E+A A+ +NGK LDGR I VD
Sbjct: 38 AHVVMDRYSGRSRGFGFVTFESPEDAASAVNLLNGKELDGRAIRVD 83
>gi|198476543|ref|XP_001357388.2| GA10876 [Drosophila pseudoobscura pseudoobscura]
gi|198137744|gb|EAL34457.2| GA10876 [Drosophila pseudoobscura pseudoobscura]
Length = 625
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 33/49 (67%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89
A +IMD NRSKGYG++T+ E+A+KAL +NG L GR + V NV
Sbjct: 393 AIQLIMDTETNRSKGYGFITYHNAEDAKKALEQLNGFELAGRPMKVGNV 441
>gi|354544201|emb|CCE40924.1| hypothetical protein CPAR2_109610 [Candida parapsilosis]
Length = 475
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 35/49 (71%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ A +IM++ +S+GYGYV F+++ A+KA+ +M G+ +DGR I +D
Sbjct: 261 VIGARVIMERATGKSRGYGYVDFTSKAAAEKAIEEMQGREIDGRPINLD 309
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 54 KGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
KG+GYV F + +EA+ AL +NG+ L+GR +D
Sbjct: 378 KGFGYVQFGSVDEAKAALEALNGEYLEGRPCRLD 411
>gi|240279975|gb|EER43479.1| RNA recognition domain-containing protein-containing protein
[Ajellomyces capsulatus H143]
Length = 534
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
L AT+++D +SKGYG+VTF+ E+A KAL + NG DGR + ++ P R
Sbjct: 64 LEHATVVLDPQTKQSKGYGFVTFADHEDAAKALEEFNGSDFDGRKLKIEVAEPRHR 119
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 37 SFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
SF ++ K + G+G+V + A+KAL +NGK +DGR + VD
Sbjct: 171 SFGKVKHAVIPKRGTKHSGFGFVVLRGWKNAEKALNAVNGKEVDGRTLAVD 221
>gi|239818248|ref|YP_002947158.1| RNP-1 like RNA-binding protein [Variovorax paradoxus S110]
gi|239804825|gb|ACS21892.1| RNP-1 like RNA-binding protein [Variovorax paradoxus S110]
Length = 181
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L AF QFG VT +A ++M++ RSKG+G+V
Sbjct: 19 LEQAFGQFGAVT---------------------------SAKVMMERDTGRSKGFGFVEM 51
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
++ EAQ A+ MNG+ L GR + V+ RP
Sbjct: 52 GSDAEAQAAINGMNGQPLGGRSVVVNEARP 81
>gi|223938031|ref|ZP_03629929.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
gi|223893245|gb|EEF59708.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
Length = 114
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+IMDK R++G+G+VT ST+E A A+ ++NGK GR + V+ RP
Sbjct: 33 LIMDKMTGRARGFGFVTMSTKEGADAAVQNLNGKQWQGRALTVNEARP 80
>gi|292490317|ref|YP_003525756.1| RNP-1 like RNA-binding protein [Nitrosococcus halophilus Nc4]
gi|291578912|gb|ADE13369.1| RNP-1 like RNA-binding protein [Nitrosococcus halophilus Nc4]
Length = 97
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+A +I+DK NRSKG+G+V + +E+A+ A+ +MN L GR I V+ RP
Sbjct: 29 SAKVIVDKFSNRSKGFGFVEMARQEDAETAIKEMNDSDLKGRQIVVNQARP 79
>gi|398802241|ref|ZP_10561457.1| RRM domain-containing RNA-binding protein [Polaromonas sp. CF318]
gi|398100710|gb|EJL90943.1| RRM domain-containing RNA-binding protein [Polaromonas sp. CF318]
Length = 148
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 35/53 (66%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ +A ++M++ RSKG+G+V ++ EAQ A+ MNG+ L GR + V+ RP
Sbjct: 29 VTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQPLGGRSVVVNEARP 81
>gi|308499747|ref|XP_003112059.1| CRE-PAB-1 protein [Caenorhabditis remanei]
gi|308268540|gb|EFP12493.1| CRE-PAB-1 protein [Caenorhabditis remanei]
Length = 695
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 17/95 (17%)
Query: 4 DAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFST 63
D FS FG + V FP+ + T++ + SKGYG+V F T
Sbjct: 154 DTFSLFGNILSCKV--------TFPIEHL---------KTVVAIDDEGSSKGYGFVHFET 196
Query: 64 EEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
EE AQ A+ +NG LL G+ +FV +P + N +
Sbjct: 197 EEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRE 231
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 16/106 (15%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L F FG +T V L PL +F+ LF +M RSKG+G+V F
Sbjct: 360 LKKQFENFGNITSAKV-------GLVPLEFFIS----LFQ---VMTDENGRSKGFGFVCF 405
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQSAQ 107
EEA A+ +MN K++ + ++V R+ + A LA Q Q
Sbjct: 406 EKPEEATTAVTEMNSKMVCSKPLYV--ALAQRKEDRRAQLASQYMQ 449
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 12/111 (10%)
Query: 8 QFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFA-------ATIIMDKGKNRSKGYGYVT 60
+ G+ + Y K+ F HY + LFA ++ GK SKG+G+V
Sbjct: 231 ELGETAKKFTNVYVKN---FGDHYNKETLEKLFAKYGAITSCDVMTSDGK--SKGFGFVA 285
Query: 61 FSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQSAQSPEE 111
F+ EEA+ A+ +N +DG + + R ++ A L ++ Q E
Sbjct: 286 FAQPEEAEAAVQALNDSAVDGSDLKLHVCRAQKKSERHAELKKKHEQHKVE 336
>gi|325088692|gb|EGC42002.1| ribosome biogenesis [Ajellomyces capsulatus H88]
Length = 699
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
L AT+++D +SKGYG+VTF+ E+A KAL + NG DGR + ++ P R
Sbjct: 31 LKHATVVLDPQTKQSKGYGFVTFADHEDAAKALEEFNGSDFDGRKLKIEVAEPRHR 86
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 37 SFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
SF ++ K + G+G+V + A+KAL +NGK +DGR + VD
Sbjct: 138 SFGKVKHAVIPKRGTKHSGFGFVVLRGWKNAEKALNAVNGKEVDGRTLAVD 188
>gi|159462882|ref|XP_001689671.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
gi|158283659|gb|EDP09409.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
Length = 636
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 37/54 (68%)
Query: 33 LISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
L ++S + +M G +SKG+G+V F++ +EA +A+ +MNGK++ G+ ++V
Sbjct: 323 LFANSGTITSCKVMKDGSGKSKGFGFVCFTSHDEATRAVTEMNGKMVKGKPLYV 376
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 40 FAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDA 99
+ ++M K SKG+G++ F E A K + +N + + G+ ++ R ++ +A
Sbjct: 227 ITSAVVMKDDKGGSKGFGFINFKDAESAAKCVEYLNEREMSGKTLYAG--RAQKKTEREA 284
Query: 100 PLARQSAQSPEE 111
L +++ +S +E
Sbjct: 285 MLRQKAEESKQE 296
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
SKGYG+V F + A +A+ +N K ++G++++V
Sbjct: 153 SKGYGFVHFEDQAAADRAIQTVNQKEIEGKIVYV 186
>gi|337281472|ref|YP_004620944.1| glycine-rich RNA binding protein [Ramlibacter tataouinensis
TTB310]
gi|334732549|gb|AEG94925.1| Candidate glycine-rich RNA binding protein [Ramlibacter
tataouinensis TTB310]
Length = 159
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L AFSQFG V+ +A ++M++ RSKG+G+V
Sbjct: 19 LEQAFSQFGAVS---------------------------SAKVMMERDTGRSKGFGFVEM 51
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
++ EAQ A+ MNG+ L GR + V+ RP
Sbjct: 52 GSDAEAQAAINGMNGQPLGGRSVVVNEARP 81
>gi|327301915|ref|XP_003235650.1| glycine-rich RNA-binding protein [Trichophyton rubrum CBS 118892]
gi|326463002|gb|EGD88455.1| glycine-rich RNA-binding protein [Trichophyton rubrum CBS 118892]
Length = 149
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
A ++ D+ NRS+G+G+V FS++ EA AL MN + DGRVI VD
Sbjct: 33 AIVVKDRDTNRSRGFGFVRFSSDSEADAALNAMNNQEFDGRVIRVD 78
>gi|398810631|ref|ZP_10569445.1| RRM domain-containing RNA-binding protein [Variovorax sp. CF313]
gi|398082488|gb|EJL73237.1| RRM domain-containing RNA-binding protein [Variovorax sp. CF313]
Length = 179
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L AF QFG VT +A ++M++ RSKG+G+V
Sbjct: 19 LEQAFGQFGAVT---------------------------SAKVMMERDTGRSKGFGFVEM 51
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
++ EAQ A+ MNG+ L GR + V+ RP
Sbjct: 52 GSDAEAQAAINGMNGQPLGGRSVVVNEARP 81
>gi|319796634|ref|YP_004158274.1| rnp-1 like RNA-binding protein [Variovorax paradoxus EPS]
gi|315599097|gb|ADU40163.1| RNP-1 like RNA-binding protein [Variovorax paradoxus EPS]
Length = 189
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L AF QFG VT +A ++M++ RSKG+G+V
Sbjct: 19 LEQAFGQFGAVT---------------------------SAKVMMERDTGRSKGFGFVEM 51
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
++ EAQ A+ MNG+ L GR + V+ RP
Sbjct: 52 GSDAEAQAAINGMNGQPLGGRSVVVNEARP 81
>gi|358056531|dbj|GAA97500.1| hypothetical protein E5Q_04178 [Mixia osmundae IAM 14324]
Length = 287
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 37/53 (69%), Gaps = 3/53 (5%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD---NVRPSR 93
++ D+ RS+G+ +VT +E++A+KA+AD+NG+ +DGR + VD RP R
Sbjct: 80 VVYDQRSERSRGFAFVTMRSEDDAEKAIADLNGQEIDGRRVRVDYSLTTRPHR 132
>gi|333030558|ref|ZP_08458619.1| RNP-1 like RNA-binding protein [Bacteroides coprosuis DSM 18011]
gi|332741155|gb|EGJ71637.1| RNP-1 like RNA-binding protein [Bacteroides coprosuis DSM 18011]
Length = 104
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 33/51 (64%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+A +I DK NRSKG+G+V +E A KA+ ++NG +DGR I V RP
Sbjct: 29 SARVIKDKFTNRSKGFGFVEMEDDEAATKAINELNGAEVDGRPIAVSEARP 79
>gi|225706362|gb|ACO09027.1| Cold-inducible RNA-binding protein [Osmerus mordax]
Length = 172
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 27/86 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L D FS++GQ++E +I D+ RS+G+G+VTF
Sbjct: 21 LEDVFSKYGQISE---------------------------VVVIKDRETQRSRGFGFVTF 53
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD 87
+EA+ A+ MNGK LDGR I VD
Sbjct: 54 DNPDEAKDAMLAMNGKSLDGRQIRVD 79
>gi|255949670|ref|XP_002565602.1| Pc22g16890 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211592619|emb|CAP98977.1| Pc22g16890 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 724
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 30 HYFLISDSFLFA-ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 88
YF S S++ A ++ DK SKG+G+VTF+ E+A+ AL ++NG DG+VI VD
Sbjct: 54 EYF--SQSYIIKHAVVVCDKETKASKGFGFVTFADVEDAESALKELNGSKFDGKVIRVDY 111
Query: 89 VRPSRRYNTDAPLAR 103
SR+ D + R
Sbjct: 112 AE-SRKREIDEKVGR 125
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 55 GYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
G+G++T + A++AL +NGK +DGR + VD
Sbjct: 190 GFGFITMRGRKNAERALQMINGKEIDGRQLAVD 222
>gi|443895166|dbj|GAC72512.1| hypothetical protein PANT_7d00134 [Pseudozyma antarctica T-34]
Length = 301
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 29/93 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
LA AFS FGQ+T+ +V + D+ RS+G+G+VTF
Sbjct: 19 LAHAFSAFGQLTDYIV---------------------------MKDRETGRSRGFGFVTF 51
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD--NVRPS 92
+T+ EA A+A +N + LDGR I V+ N RP+
Sbjct: 52 ATQGEADAAIAALNEQELDGRRIRVNMANSRPA 84
>gi|91790716|ref|YP_551668.1| RNA recognition motif-containing protein [Polaromonas sp. JS666]
gi|91699941|gb|ABE46770.1| RNA-binding region RNP-1 (RNA recognition motif) [Polaromonas sp.
JS666]
Length = 151
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+A ++M++ RSKG+G+V ++ EAQ A+ MNG+ L GR + V+ RP
Sbjct: 31 SAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQPLGGRSVVVNEARP 81
>gi|425781282|gb|EKV19258.1| hypothetical protein PDIG_04180 [Penicillium digitatum PHI26]
gi|425783364|gb|EKV21218.1| hypothetical protein PDIP_08850 [Penicillium digitatum Pd1]
Length = 162
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV--RPSR 93
A ++ D+ RS+G+G+V F+T+ EA AL MN + DGRVI VD RP R
Sbjct: 31 AIVVKDRATLRSRGFGFVRFATDAEADSALGAMNNQEFDGRVIRVDKAFDRPQR 84
>gi|197632397|gb|ACH70922.1| elongation factor-1 delta-1 [Salmo salar]
Length = 203
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 33/44 (75%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
++ D+ RS+G+G+VTF E+A+ A+A MNGK +DGR+I VD
Sbjct: 36 VVRDRETQRSRGFGFVTFENPEDAKDAMAAMNGKSVDGRMIRVD 79
>gi|150024447|ref|YP_001295273.1| RNA-binding protein RbpA [Flavobacterium psychrophilum JIP02/86]
gi|149770988|emb|CAL42455.1| Putative RNA-binding protein RbpA [Flavobacterium psychrophilum
JIP02/86]
Length = 133
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ II DK RSKG+G+V +EE QKA+ ++NG +DGR I V+ P
Sbjct: 29 SVKIITDKFTGRSKGFGFVEMPNDEEGQKAIDELNGATVDGRAIVVNKSEP 79
>gi|90265701|dbj|BAE91897.1| glycine-rich RNA-binding protein [Lolium perenne]
Length = 107
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 27/86 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L AFSQFG++T+ II D+ RS+G+G+VTF
Sbjct: 21 LEQAFSQFGEITD---------------------------CKIINDRETGRSRGFGFVTF 53
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD 87
S+ E + A+ MNG+ LDGR I V+
Sbjct: 54 SSSESMKNAIEGMNGQDLDGRNITVN 79
>gi|78189511|ref|YP_379849.1| RNA recognition motif-containing protein [Chlorobium
chlorochromatii CaD3]
gi|78171710|gb|ABB28806.1| RNA-binding region RNP-1 (RNA recognition motif) [Chlorobium
chlorochromatii CaD3]
Length = 90
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAF QFGQV +A+II DK RSKG+G+V
Sbjct: 17 LRDAFGQFGQVE---------------------------SASIITDKFSGRSKGFGFVDM 49
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ EA++A+ MN K L+GR I V+ +P
Sbjct: 50 PNDSEAREAIGAMNEKELNGRPIKVNEAKP 79
>gi|82248148|sp|Q9PTX2.1|CIRBP_RANCA RecName: Full=Cold-inducible RNA-binding protein; Short=BFCIRP;
AltName: Full=Glycine-rich RNA-binding protein CIRP
gi|6682989|dbj|BAA88978.1| BFCIRP [Rana catesbeiana]
Length = 164
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
++ D+ RS+G+G+VTF E+A+ A+A MNGK +DGR I VD S
Sbjct: 37 VVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQAGKS 85
>gi|388567211|ref|ZP_10153648.1| putative RNA-binding protein rbpB [Hydrogenophaga sp. PBC]
gi|388265594|gb|EIK91147.1| putative RNA-binding protein rbpB [Hydrogenophaga sp. PBC]
Length = 97
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+A ++ D+ RSKG+G+V ++E EAQ A+ +NG+ +DGR I V+ RP
Sbjct: 31 SAKVMTDRDSGRSKGFGFVEMASEAEAQAAINGLNGQSVDGRQIVVNVSRP 81
>gi|226506948|ref|NP_001149776.1| glycine-rich RNA-binding protein 7 [Zea mays]
gi|195633803|gb|ACG36746.1| glycine-rich RNA-binding protein 7 [Zea mays]
Length = 276
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 36/51 (70%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89
+ A II+D+ RS+G+G+VT+++ EEA A+ ++GK LDGR I V++
Sbjct: 56 VIEARIIIDRESGRSRGFGFVTYTSSEEASAAITALDGKTLDGRSIRVNHA 106
>gi|345569038|gb|EGX51907.1| hypothetical protein AOL_s00043g641 [Arthrobotrys oligospora ATCC
24927]
Length = 512
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
A ++ D +NRSKG GYV F+T +A+KALA+ G +DGR I +D
Sbjct: 282 ARVVWDNQRNRSKGIGYVDFATRADAEKALAEKQGAEIDGRPINLD 327
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
I DK KG+ YVTFST +EA+KA A MNG+ + GR I D +P
Sbjct: 385 IPTDKDTGNKKGFAYVTFSTIDEAKKAHAAMNGQQVCGRSIRTDYSQP 432
>gi|218200448|gb|EEC82875.1| hypothetical protein OsI_27755 [Oryza sativa Indica Group]
Length = 141
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 11/71 (15%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPL 101
A ++ D+ SKG+G++ ++T E+A K + M+GK LDG VIF + RP
Sbjct: 65 ARVVTDRVTGFSKGFGFIRYATVEDAAKGIEGMDGKFLDGWVIFAEYARP---------- 114
Query: 102 ARQSAQSPEEN 112
R Q PE N
Sbjct: 115 -RTPPQQPEMN 124
>gi|167386187|ref|XP_001737654.1| splicing factor, arginine/serine-rich [Entamoeba dispar SAW760]
gi|165899464|gb|EDR26052.1| splicing factor, arginine/serine-rich, putative [Entamoeba dispar
SAW760]
Length = 199
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
SKG+G+VTF+ EE A+KA+ +MNGK +DG ++ V RP R D
Sbjct: 43 SKGFGFVTFNDEETAEKAVNEMNGKEIDGSIVVVQISRPQDRKRRD 88
>gi|242766029|ref|XP_002341092.1| ribosome biogenesis (Nop4), putative [Talaromyces stipitatus ATCC
10500]
gi|218724288|gb|EED23705.1| ribosome biogenesis (Nop4), putative [Talaromyces stipitatus ATCC
10500]
Length = 715
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 35 SDSFLFA-ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
S S++ AT+++D +SKGYG+VTF+ E+AQ+AL + NG +GR I V+ +P +
Sbjct: 68 SQSYVIKHATVVIDPETKQSKGYGFVTFADIEDAQRALEEFNGVEFEGRKIKVEVAQPRK 127
Query: 94 R 94
R
Sbjct: 128 R 128
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 37 SFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
SF ++ K N G+G+V + A+KAL +NGK +DGR + VD
Sbjct: 183 SFGKVKHAVVPKKGNVQAGFGFVVLRGRKNAEKALEAVNGKEIDGRTLAVD 233
>gi|116781810|gb|ABK22248.1| unknown [Picea sitchensis]
Length = 215
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
L A +++D+ RS+G+G+VTF ++ + A+ M+G LDGR I VD RP
Sbjct: 33 LIEAKVVVDRDTGRSRGFGFVTFDDKKSMEDAIDSMHGMSLDGRSITVDRARP 85
>gi|407039318|gb|EKE39578.1| RNA recognition motif (RRM, RBD, or RNP domain) containing
protein [Entamoeba nuttalli P19]
Length = 199
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
SKG+G+VTF+ EE A+KA+ +MNGK +DG ++ V RP R D
Sbjct: 43 SKGFGFVTFNDEETAEKAVNEMNGKEIDGSIVVVQISRPQDRKRRD 88
>gi|326474784|gb|EGD98793.1| glycine-rich RNA-binding protein [Trichophyton tonsurans CBS
112818]
Length = 149
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
A ++ D+ NRS+G+G+V FS++ EA AL MN + DGRVI VD
Sbjct: 33 AIVVKDRDTNRSRGFGFVRFSSDSEADAALNAMNNQEFDGRVIRVD 78
>gi|406864898|gb|EKD17941.1| RNA recognition domain-containing protein-containing protein
[Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 810
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDA 99
AT+++D +SKGYG+VT + E+AQ+AL + NGK GR + ++ +P R D
Sbjct: 75 ATVVLDPETKQSKGYGFVTLADAEDAQRALEEFNGKTFMGRKMKIEIAQPRSREMADG 132
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 43 TIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+++ K + G+G++T ++ A KALA +NG L+DGR++ VD
Sbjct: 195 SVLPKKKGDTQAGFGFITMRGKKNADKALAAINGTLVDGRILAVD 239
>gi|339242463|ref|XP_003377157.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316974060|gb|EFV57598.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 352
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 43/67 (64%), Gaps = 5/67 (7%)
Query: 21 FKSQPLFPLHYFLISDSFLFAAT---IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGK 77
F+ +P PLH + +DS LF ++ +I D +SKGYG+V++ + ++A++A+ MNG+
Sbjct: 103 FRKRP--PLHQIVRADSLLFISSDVKVIRDLQTLKSKGYGFVSYVSHDDAERAIEQMNGQ 160
Query: 78 LLDGRVI 84
L R I
Sbjct: 161 WLGRRTI 167
>gi|302809382|ref|XP_002986384.1| hypothetical protein SELMODRAFT_49298 [Selaginella
moellendorffii]
gi|300145920|gb|EFJ12593.1| hypothetical protein SELMODRAFT_49298 [Selaginella
moellendorffii]
Length = 145
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ A +++D+ RS+G+G+VTF E Q A+ M+GK LDGR I V +P
Sbjct: 28 VIEAKVVLDRDTERSRGFGFVTFGDENSMQDAIDGMHGKDLDGRSITVSKAQP 80
>gi|50409715|ref|XP_456900.1| DEHA2A13134p [Debaryomyces hansenii CBS767]
gi|49652564|emb|CAG84877.1| DEHA2A13134p [Debaryomyces hansenii CBS767]
Length = 447
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 34/49 (69%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ +A +IM++ +S+GYGYV F ++ A+KAL + GK LDGR I +D
Sbjct: 224 VISARVIMERSTGKSRGYGYVDFDSKSAAEKALQEYQGKELDGRPINLD 272
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 54 KGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
KG+GYV FS+ +EA+ AL +NG+ LDGR +D P R N++AP
Sbjct: 341 KGFGYVQFSSVDEAKAALEALNGEYLDGRACRLDFSTP--RDNSNAP 385
>gi|242823058|ref|XP_002488014.1| glycine-rich RNA-binding protein, putative [Talaromyces
stipitatus ATCC 10500]
gi|218712935|gb|EED12360.1| glycine-rich RNA-binding protein, putative [Talaromyces
stipitatus ATCC 10500]
Length = 134
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
A +I D+ NRS+G+G+V F+T+ EA A+ MN + DGRVI VD
Sbjct: 31 AIVIKDRDTNRSRGFGFVRFATDAEADAAIDGMNNQEFDGRVIRVD 76
>gi|67473916|ref|XP_652707.1| splicing factor, arginine/serine-rich [Entamoeba histolytica
HM-1:IMSS]
gi|56469586|gb|EAL47321.1| splicing factor, arginine/serine-rich, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449706789|gb|EMD46560.1| RNAbinding region RNP-1, putative [Entamoeba histolytica KU27]
Length = 199
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
SKG+G+VTF+ EE A+KA+ +MNGK +DG ++ V RP R D
Sbjct: 43 SKGFGFVTFNDEETAEKAVNEMNGKEIDGSIVVVQISRPQDRKRRD 88
>gi|57997079|emb|CAB66834.2| hypothetical protein [Homo sapiens]
Length = 631
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T E A++A+ MNG LL+GR +FV
Sbjct: 125 ILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFV 170
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 LMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|449468518|ref|XP_004151968.1| PREDICTED: nucleolysin TIAR-like [Cucumis sativus]
gi|449496932|ref|XP_004160266.1| PREDICTED: nucleolysin TIAR-like [Cucumis sativus]
Length = 174
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
A ++ D+ SKG+G+V ++T E+A K + M+GK LDG VIF + RP
Sbjct: 108 ARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARP 157
>gi|259089109|ref|NP_001158591.1| cold inducible RNA binding protein [Oncorhynchus mykiss]
gi|225705082|gb|ACO08387.1| Cold-inducible RNA-binding protein [Oncorhynchus mykiss]
Length = 209
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 33/46 (71%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89
++ D+ RS+G+G+VTF E+A+ A+A MNGK +DGR+I VD
Sbjct: 36 VVRDRETRRSRGFGFVTFENPEDAKDAMAAMNGKSVDGRMIRVDEA 81
>gi|209737234|gb|ACI69486.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 146
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 33/44 (75%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
++ D+ RS+G+G+VTF E+A+ A+A MNGK +DGR+I VD
Sbjct: 36 VVRDRETQRSRGFGFVTFENPEDAKDAMAAMNGKSVDGRMIRVD 79
>gi|82802749|gb|ABB92425.1| PABP3 [Homo sapiens]
Length = 630
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T E A++A+ MNG LL+GR +FV
Sbjct: 125 ILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFV 170
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>gi|11610605|gb|AAG38953.1|AF132026_1 testis-specific poly(A)-binding protein [Homo sapiens]
Length = 631
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T E A++A+ MNG LL+GR +FV
Sbjct: 125 ILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFV 170
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>gi|45238849|ref|NP_112241.2| polyadenylate-binding protein 3 [Homo sapiens]
gi|28201852|sp|Q9H361.2|PABP3_HUMAN RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3; AltName:
Full=Testis-specific poly(A)-binding protein
gi|20379668|gb|AAH27617.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|119628765|gb|EAX08360.1| poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|123982576|gb|ABM83029.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|123997243|gb|ABM86223.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|189055351|dbj|BAG36140.1| unnamed protein product [Homo sapiens]
Length = 631
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T E A++A+ MNG LL+GR +FV
Sbjct: 125 ILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFV 170
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>gi|210075649|ref|XP_502423.2| YALI0D04917p [Yarrowia lipolytica]
gi|199425763|emb|CAG80611.2| YALI0D04917p [Yarrowia lipolytica CLIB122]
Length = 430
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 96
AA I+ D S+GYG+V FS+EE+ QKAL +M G +L R + V P R++
Sbjct: 119 AAKIMTDPVTGLSRGYGFVRFSSEEDQQKALQEMQGYMLGSRPLRVSTATPKNRHH 174
>gi|2293480|gb|AAB65412.1| glycine-rich protein [Oryza sativa Indica Group]
Length = 161
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ + II D+ RS+G+G+VTFS+E+ + A+ MNGK LDGR I V+
Sbjct: 34 ILESKIINDRETGRSRGFGFVTFSSEQAMRDAIEGMNGKELDGRNITVN 82
>gi|73909065|gb|AAH45608.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T E A++A+ MNG LL+GR +FV
Sbjct: 125 ILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFV 170
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>gi|425765484|gb|EKV04163.1| hypothetical protein PDIP_88470 [Penicillium digitatum Pd1]
gi|425778342|gb|EKV16473.1| hypothetical protein PDIG_20660 [Penicillium digitatum PHI26]
Length = 136
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
AT++ D+ RS+G+G+V FST+EEA A+ MN + DGR I VD
Sbjct: 31 ATVVKDRDTGRSRGFGFVRFSTDEEATAAMNAMNNQEFDGRQIRVD 76
>gi|82802751|gb|ABB92426.1| PABP3 [Pan troglodytes]
Length = 632
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T E A++A+ MNG LL+GR +FV
Sbjct: 125 ILSCNVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFV 170
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>gi|397482906|ref|XP_003812655.1| PREDICTED: polyadenylate-binding protein 3-like [Pan paniscus]
Length = 634
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T E A++A+ MNG LL+GR +FV
Sbjct: 125 ILSCNVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFV 170
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>gi|114649018|ref|XP_001154541.1| PREDICTED: polyadenylate-binding protein 3 isoform 5 [Pan
troglodytes]
Length = 633
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T E A++A+ MNG LL+GR +FV
Sbjct: 125 ILSCNVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFV 170
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>gi|343459003|gb|AEM37660.1| cold inducible RNA binding protein [Epinephelus bruneus]
Length = 176
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 96
+I DK RS+G+G+V + ++A+ AL MNGK LDGR I VD R N
Sbjct: 36 VIRDKETGRSRGFGFVKYDNSDDAKDALEGMNGKTLDGRAIRVDEAGKGGRSN 88
>gi|39996426|ref|NP_952377.1| RNA-binding protein [Geobacter sulfurreducens PCA]
gi|409911860|ref|YP_006890325.1| RNA-binding protein [Geobacter sulfurreducens KN400]
gi|39983306|gb|AAR34700.1| RNA-binding protein [Geobacter sulfurreducens PCA]
gi|298505436|gb|ADI84159.1| RNA-binding protein [Geobacter sulfurreducens KN400]
Length = 107
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 32/51 (62%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
II D RSKG GYV TEEEA++A+ ++G LL RVI V RP ++
Sbjct: 34 IITDPETGRSKGCGYVRMLTEEEAKEAIETLDGALLRNRVITVSVARPQKQ 84
>gi|239606561|gb|EEQ83548.1| ribosome biogenesis protein Nop4 [Ajellomyces dermatitidis ER-3]
Length = 744
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 13/83 (15%)
Query: 12 VTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKAL 71
TE L ++ +S +PL + AT+++D +SK YG+VTF+ E+A KAL
Sbjct: 61 TTESLTEYFSQS---YPLKH----------ATVVLDPQTKQSKSYGFVTFADHEDAAKAL 107
Query: 72 ADMNGKLLDGRVIFVDNVRPSRR 94
+ NG + DG+ + ++ P R
Sbjct: 108 EEFNGSVFDGKKLKIEVAEPRHR 130
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+I +G S G+G+V + A+KAL +NGK +DGR + VD
Sbjct: 190 VIPKRGTQHS-GFGFVVLRGRKNAEKALEAVNGKEIDGRTLAVD 232
>gi|324509105|gb|ADY43836.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 661
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 34 ISDSFLFAATIIMDKGKN----RSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89
I D+F I+ K N SKGYG+V F TEE AQKA+ +NG LL+G+ ++V
Sbjct: 123 IYDTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKF 182
Query: 90 RP 91
+P
Sbjct: 183 QP 184
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M RSKG+G+V F +EA KA+ +MNGK++ + ++V R+ + A LA Q
Sbjct: 336 VMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYV--ALAQRKEDRKAQLASQ 393
Query: 105 SAQ 107
Q
Sbjct: 394 YMQ 396
>gi|209154454|gb|ACI33459.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 206
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 33/44 (75%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
++ D+ RS+G+G+VTF E+A+ A+A MNGK +DGR+I VD
Sbjct: 36 VVRDRETQRSRGFGFVTFENPEDAKDAMAAMNGKSVDGRMIRVD 79
>gi|432865704|ref|XP_004070572.1| PREDICTED: embryonic polyadenylate-binding protein-like [Oryzias
latipes]
Length = 624
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M K RS+G+G+V ++ E+AQKA+ +MNGK ++G++I+V R +R L R+
Sbjct: 222 VMRDEKGRSRGFGFVNYAHHEDAQKAVDEMNGKEMNGKIIYVG--RAQKRLERQGELKRK 279
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ SKGYG+V F T+E A +A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--RGSKGYGFVHFETQEAANRAIETMNGMLLNDRKVFV 170
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++ + G+ SKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMTEAGQ--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>gi|403213707|emb|CCK68209.1| hypothetical protein KNAG_0A05440 [Kazachstania naganishii CBS
8797]
Length = 442
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 34/46 (73%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
A ++ D RS+GYG+V+F+ +E+AQKA+ +M GK L+GR I ++
Sbjct: 196 AHVMWDMQTGRSRGYGFVSFADQEQAQKAMEEMQGKELNGRPIRIN 241
>gi|255540443|ref|XP_002511286.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223550401|gb|EEF51888.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 319
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSRRY 95
A ++ D+ RS+G+G+VT STE E A+A ++G+ LDGR I V+ RP R +
Sbjct: 264 ARVVYDRDTGRSRGFGFVTMSTETELNDAIAALDGRSLDGRAIRVNVAEQRPRRNF 319
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
A +I ++ + S+G+G+V+ ST EEA+KA+ + LDGR++ V+ P
Sbjct: 170 AEVIYNRETDTSRGFGFVSMSTVEEAEKAVEMFHRHDLDGRLLTVNKAAP 219
>gi|212275199|ref|NP_001130054.1| uncharacterized protein LOC100191146 [Zea mays]
gi|194688180|gb|ACF78174.1| unknown [Zea mays]
gi|414878270|tpg|DAA55401.1| TPA: glycine-rich RNA-binding protein 7 [Zea mays]
Length = 254
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 36/51 (70%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89
+ A II+D+ RS+G+G+VT+++ EEA A+ ++GK LDGR I V++
Sbjct: 56 VIEARIIIDRESGRSRGFGFVTYTSSEEASAAITALDGKTLDGRSIRVNHA 106
>gi|212722336|ref|NP_001132163.1| uncharacterized protein LOC100193584 [Zea mays]
gi|194693616|gb|ACF80892.1| unknown [Zea mays]
Length = 234
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 90
+ + +I D+ RS+G+G+VTFS+E A+ +MNGK LDGR I V+ +
Sbjct: 109 ILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQ 160
>gi|402217291|gb|EJT97372.1| RNA-binding domain-containing protein [Dacryopinax sp. DJM-731
SS1]
Length = 167
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 29/92 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L AFSQFGQV + +V + D+ RS+G+G+VTF
Sbjct: 29 LRSAFSQFGQVLDCIV---------------------------MKDRESGRSRGFGFVTF 61
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD--NVRP 91
T +EAQ A+ +N + LDGR I V+ N RP
Sbjct: 62 GTSQEAQAAIDGLNEQDLDGRRIRVNLANARP 93
>gi|294884831|gb|ADF47427.1| poly(A) binding protein cytoplasmic-2, partial [Dugesia japonica]
Length = 309
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M NRSKG+G+V FS EEA KA+ +MNGK+ + ++V
Sbjct: 31 VMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYV 72
>gi|213406493|ref|XP_002174018.1| nucleolar protein [Schizosaccharomyces japonicus yFS275]
gi|212002065|gb|EEB07725.1| nucleolar protein [Schizosaccharomyces japonicus yFS275]
Length = 690
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 15/94 (15%)
Query: 9 FGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQ 68
F + DL F+ + P+ A ++ DK +SKG+G+VTFS E+A
Sbjct: 16 FSTTSNDLTDFFSNAAPVK-------------HAVVVTDKETGQSKGFGFVTFSLHEDAV 62
Query: 69 KALADMNGKLLDGRVIFVDNVRPSRR--YNTDAP 100
+AL ++ K LDGR++ ++ P +R +D P
Sbjct: 63 RALEELKNKKLDGRILRMEFAAPRKRNGETSDKP 96
Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 48 KGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
KG R G+ +V AQKA+ +N +DGRV+ VD
Sbjct: 143 KGGGRMCGFAFVWMKDRASAQKAMDTLNATEIDGRVVAVD 182
>gi|195654321|gb|ACG46628.1| glycine-rich RNA-binding protein 7 [Zea mays]
gi|238010482|gb|ACR36276.1| unknown [Zea mays]
Length = 252
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 36/51 (70%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89
+ A II+D+ RS+G+G+VT+++ EEA A+ ++GK LDGR I V++
Sbjct: 56 VIEARIIIDRESGRSRGFGFVTYTSSEEASAAITALDGKTLDGRSIRVNHA 106
>gi|337281471|ref|YP_004620943.1| glycine-rich RNA binding protein [Ramlibacter tataouinensis
TTB310]
gi|334732548|gb|AEG94924.1| Candidate glycine-rich RNA binding protein [Ramlibacter
tataouinensis TTB310]
Length = 128
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+A ++M++ RSKG+G+V S+ EAQ A+ MNG+ + GR + V+ RP
Sbjct: 31 SAKVMMERDTGRSKGFGFVEMSSPAEAQAAIEGMNGQQIGGRGLVVNEARP 81
>gi|170579093|ref|XP_001894673.1| polyadenylate-binding protein 1 [Brugia malayi]
gi|158598601|gb|EDP36463.1| polyadenylate-binding protein 1, putative [Brugia malayi]
Length = 655
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 34 ISDSFLFAATIIMDKGKN----RSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89
I D+F I+ K N SKGYG+V F TEE AQKA+ +NG LL+G+ ++V
Sbjct: 122 IYDTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKF 181
Query: 90 RP 91
+P
Sbjct: 182 QP 183
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M RSKG+G+V F +EA KA+ +MNGK++ + ++V R+ + A LA Q
Sbjct: 335 VMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYV--ALAQRKEDRKAQLASQ 392
Query: 105 SAQ 107
Q
Sbjct: 393 YMQ 395
>gi|302814001|ref|XP_002988685.1| hypothetical protein SELMODRAFT_18499 [Selaginella
moellendorffii]
gi|300143506|gb|EFJ10196.1| hypothetical protein SELMODRAFT_18499 [Selaginella
moellendorffii]
Length = 135
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ A +++D+ RS+G+G+VTF E Q A+ M+GK LDGR I V +P
Sbjct: 34 VIEAKVVLDRDTERSRGFGFVTFGDENSMQDAIDGMHGKDLDGRSITVSKAQP 86
>gi|50305507|ref|XP_452713.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641846|emb|CAH01564.1| KLLA0C11495p [Kluyveromyces lactis]
Length = 445
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 35/49 (71%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ +A ++ ++G +RS+GYGYV F + A+KA+ +M+GK +DGR I D
Sbjct: 222 VISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEMHGKEIDGRPINCD 270
>gi|115456445|ref|NP_001051823.1| Os03g0836200 [Oryza sativa Japonica Group]
gi|40714682|gb|AAR88588.1| putative RNA binding protein [Oryza sativa Japonica Group]
gi|108711961|gb|ABF99756.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|108711962|gb|ABF99757.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|108711963|gb|ABF99758.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|108711964|gb|ABF99759.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113550294|dbj|BAF13737.1| Os03g0836200 [Oryza sativa Japonica Group]
gi|125546344|gb|EAY92483.1| hypothetical protein OsI_14220 [Oryza sativa Indica Group]
gi|125588547|gb|EAZ29211.1| hypothetical protein OsJ_13272 [Oryza sativa Japonica Group]
gi|215695067|dbj|BAG90258.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215715212|dbj|BAG94963.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764998|dbj|BAG86695.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 205
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAF +FG +TE A ++ DK RS+G+G+VTF
Sbjct: 23 LKDAFGKFGNLTE---------------------------AKVVFDKYSGRSRGFGFVTF 55
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
++ + A+ MNG LDGR I VD +P
Sbjct: 56 DEKKAMEDAIEGMNGLDLDGRAITVDKAQP 85
>gi|378729309|gb|EHY55768.1| hypothetical protein HMPREF1120_03892 [Exophiala dermatitidis
NIH/UT8656]
Length = 784
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 13/90 (14%)
Query: 13 TEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALA 72
TE L F+ LFP+ + AT+++D S+G+G+VTF E+ Q ALA
Sbjct: 60 TERLTEFF---SELFPIKH----------ATVVLDPQTKVSRGFGFVTFVDAEDTQAALA 106
Query: 73 DMNGKLLDGRVIFVDNVRPSRRYNTDAPLA 102
N +LDGR I V+ R DA +A
Sbjct: 107 QFNNAVLDGRKIKVEIAEARHRDTEDAAVA 136
Score = 38.5 bits (88), Expect = 0.57, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
++ KG G+G V ++ A+KA+A +NGK++DGR + VD
Sbjct: 199 VVPKKGPRVQYGFGIVVLRGKKNAEKAIAGVNGKVVDGRTLAVD 242
>gi|312067233|ref|XP_003136646.1| hypothetical protein LOAG_01058 [Loa loa]
gi|307768188|gb|EFO27422.1| hypothetical protein LOAG_01058 [Loa loa]
Length = 655
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 34 ISDSFLFAATIIMDKGKN----RSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89
I D+F I+ K N SKGYG+V F TEE AQKA+ +NG LL+G+ ++V
Sbjct: 122 IYDTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKF 181
Query: 90 RP 91
+P
Sbjct: 182 QP 183
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M RSKG+G+V F +EA KA+ +MNGK++ + ++V R+ + A LA Q
Sbjct: 335 VMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYV--ALAQRKEDRKAQLASQ 392
Query: 105 SAQ 107
Q
Sbjct: 393 YMQ 395
>gi|108710322|gb|ABF98117.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
[Oryza sativa Japonica Group]
Length = 153
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ + II D+ RS+G+G+VTFS+E+ + A+ MNGK LDGR I V+
Sbjct: 34 ILDSKIINDRETGRSRGFGFVTFSSEQSMRDAIEGMNGKELDGRNITVN 82
>gi|50881454|gb|AAT85299.1| glycine-rich RNA-binding protein, putative [Oryza sativa Japonica
Group]
gi|108710320|gb|ABF98115.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
[Oryza sativa Japonica Group]
gi|154550663|gb|ABS83497.1| receptor-like serine threonine kinase [Oryza sativa Japonica
Group]
gi|169244423|gb|ACA50485.1| glycine-rich RNA binding protein [Oryza sativa Japonica Group]
gi|215697732|dbj|BAG91726.1| unnamed protein product [Oryza sativa Japonica Group]
gi|306415943|gb|ADM86846.1| glycine-rich RNA binding protein [Oryza sativa Japonica Group]
Length = 162
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ + II D+ RS+G+G+VTFS+E+ + A+ MNGK LDGR I V+
Sbjct: 34 ILDSKIINDRETGRSRGFGFVTFSSEQSMRDAIEGMNGKELDGRNITVN 82
>gi|30692254|ref|NP_849523.1| glycine-rich RNA-binding protein 8 [Arabidopsis thaliana]
gi|332661645|gb|AEE87045.1| glycine-rich RNA-binding protein 8 [Arabidopsis thaliana]
Length = 126
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ II D+ RS+G+G+VTF E+ + A+ +MNGK LDGRVI V+
Sbjct: 35 SKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVN 80
>gi|15235002|ref|NP_195637.1| glycine-rich RNA-binding protein 8 [Arabidopsis thaliana]
gi|544425|sp|Q03251.1|GRP8_ARATH RecName: Full=Glycine-rich RNA-binding protein 8; AltName:
Full=Protein CCR1
gi|16305|emb|CAA78712.1| glycine rich protein [Arabidopsis thaliana]
gi|166658|gb|AAA20201.1| ORF [Arabidopsis thaliana]
gi|166839|gb|AAA32854.1| RNA-binding protein [Arabidopsis thaliana]
gi|4914438|emb|CAB43641.1| glycine-rich protein (clone AtGRP8) [Arabidopsis thaliana]
gi|7270909|emb|CAB80589.1| glycine-rich protein (clone AtGRP8) [Arabidopsis thaliana]
gi|222423067|dbj|BAH19515.1| AT4G39260 [Arabidopsis thaliana]
gi|332661644|gb|AEE87044.1| glycine-rich RNA-binding protein 8 [Arabidopsis thaliana]
Length = 169
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ II D+ RS+G+G+VTF E+ + A+ +MNGK LDGRVI V+
Sbjct: 35 SKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVN 80
>gi|133247|sp|P28644.1|ROC1_SPIOL RecName: Full=28 kDa ribonucleoprotein, chloroplastic; Short=28RNP
Length = 233
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 8/74 (10%)
Query: 24 QPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRV 83
+ LF H ++S A ++ D+ RS+G+G+VT S+E E A+A ++G+ LDGR
Sbjct: 166 EQLFSEHGKVVS------ARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRA 219
Query: 84 IFVD--NVRPSRRY 95
+ V+ RP R +
Sbjct: 220 VRVNVAEERPRRAF 233
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
A +I ++ +RS+G+G+VT ST EEA+KA+ +NG +DGR + V+ P
Sbjct: 84 AEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAP 133
>gi|406985531|gb|EKE06283.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 83
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 29 LHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 88
L F S + A +IMD+ RS+G+G+V TEE+A KAL + NGK L GR + V+
Sbjct: 18 LRAFFASFGTVIDAVVIMDRMTGRSRGFGFVEMETEEQANKAL-EGNGKDLKGRAMNVNM 76
Query: 89 VRP 91
+P
Sbjct: 77 AKP 79
>gi|225442420|ref|XP_002277538.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Vitis vinifera]
Length = 630
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M SKG+G+V FST EEAQKAL +NG LL GR +++
Sbjct: 340 VMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYI 381
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+IM G +S+G+G+V F + +EA+KA+ +NG +L + +FV
Sbjct: 234 GTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFV 279
>gi|326503656|dbj|BAJ86334.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 268
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV---DNVRPSRRY 95
+ A +I D+ RS+G+G+VT+ T +E QKA+++++G +DGR I V + +P R Y
Sbjct: 209 VLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDGTDMDGRQIRVTVAEARQPRREY 268
Score = 40.8 bits (94), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 34/48 (70%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+I DK RS+G+G+VT ST EE ++A+ +NG +LDGR + V++ P
Sbjct: 105 VIYDKLTGRSRGFGFVTMSTVEEVEEAVERLNGYVLDGRALKVNSGPP 152
>gi|392578419|gb|EIW71547.1| hypothetical protein TREMEDRAFT_56482 [Tremella mesenterica DSM
1558]
Length = 223
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 29/93 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAF QFGQV + +V + D+ RS+G+G+VTF
Sbjct: 20 LRDAFMQFGQVLDSIV---------------------------MKDRETGRSRGFGFVTF 52
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD--NVRPS 92
ST EEA+ ++ MN + LDGR I V+ N +P+
Sbjct: 53 STAEEAEISIQQMNEQPLDGRNIRVNMANAKPA 85
>gi|388492070|gb|AFK34101.1| unknown [Lotus japonicus]
Length = 211
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAF +FG++TE A +++DK RS+G+G+VTF
Sbjct: 23 LKDAFEKFGKLTE---------------------------AKVVVDKFSGRSRGFGFVTF 55
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
++ +A+ MNG LDGR I VD +P
Sbjct: 56 DDKKAMDEAIDAMNGMDLDGRTITVDKTQP 85
>gi|300121030|emb|CBK21412.2| unnamed protein product [Blastocystis hominis]
Length = 296
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 39/86 (45%), Gaps = 27/86 (31%)
Query: 1 MLADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVT 60
ML DAFSQ G++ HY I+ D+ RS+G G V
Sbjct: 114 MLRDAFSQCGKIE----------------HY-----------KILTDRQTGRSRGMGIVK 146
Query: 61 FSTEEEAQKALADMNGKLLDGRVIFV 86
FST EE A++ MNG LDGR I V
Sbjct: 147 FSTREEMNNAISTMNGSTLDGRQIAV 172
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 12/69 (17%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV-----------D 87
L I+ D+ R +G+G+V+FSTE+ KA+ + NG L++GR I V +
Sbjct: 29 LVTLQIVYDRNTGRPRGFGFVSFSTEDGLNKAM-EQNGSLINGREIRVEVAKGSLGKNSE 87
Query: 88 NVRPSRRYN 96
NVR +R YN
Sbjct: 88 NVRQNRNYN 96
>gi|170574509|ref|XP_001892845.1| polyadenylate-binding protein 4 [Brugia malayi]
gi|158601405|gb|EDP38326.1| polyadenylate-binding protein 4, putative [Brugia malayi]
Length = 462
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 34 ISDSFLFAATIIMDKGKN----RSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89
I D+F I+ K N SKGYG+V F TEE AQKA+ +NG LL+G+ ++V
Sbjct: 122 IYDTFSMFGNILSCKVANDEELNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKF 181
Query: 90 RP 91
+P
Sbjct: 182 QP 183
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M RSKG+G+V F +EA KA+ +MNGK++ + ++V R+ + A LA Q
Sbjct: 335 VMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYV--ALAQRKEDRKAQLASQ 392
Query: 105 SAQ 107
Q
Sbjct: 393 YMQ 395
Score = 34.7 bits (78), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG--RVIFVDNVRPSRRYN 96
+ +A +++D +SKG+G+V F E+A+KA+ +M+ L G R ++V R ++
Sbjct: 225 ITSAAVMVD-ADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLYV--CRAQKKNE 281
Query: 97 TDAPLARQSAQSPEE 111
A L R+ Q E
Sbjct: 282 RSAELKRRYEQQKVE 296
>gi|388511641|gb|AFK43882.1| unknown [Lotus japonicus]
Length = 211
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAF +FG++TE A +++DK RS+G+G+VTF
Sbjct: 23 LKDAFEKFGKLTE---------------------------AKVVVDKFSGRSRGFGFVTF 55
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
++ +A+ MNG LDGR I VD +P
Sbjct: 56 DDKKAMDEAIDAMNGMDLDGRTITVDKAQP 85
>gi|133248|sp|P19683.1|ROC4_NICSY RecName: Full=31 kDa ribonucleoprotein, chloroplastic; Flags:
Precursor
gi|19741|emb|CAA40364.1| 31kD chloroplast ribonucleoprotein [Nicotiana sylvestris]
gi|19756|emb|CAA37885.1| unnamed protein product [Nicotiana sylvestris]
Length = 315
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNT 97
+ +A ++ D+ RS+G+G+VT ++E E A+A+++G+ LDGR I V+ R NT
Sbjct: 256 VVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRSRRNT 314
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALA-----DMNGKLLDGRVIFVDNVRPSR 93
A +I ++ ++S+G+G+VT ST EEA+KA+ D+NG+LL RP R
Sbjct: 165 AEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPER 221
>gi|413938711|gb|AFW73262.1| chloroplast protein synthesis 4 [Zea mays]
Length = 400
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 34/56 (60%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
L IIMD+ RSKGY +V ++TEE AL MNG++++G +I VD + R
Sbjct: 327 LVEVKIIMDRISKRSKGYAFVEYTTEEAGGAALKAMNGQIINGWMIVVDVAKTRSR 382
>gi|348502707|ref|XP_003438909.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Oreochromis niloticus]
Length = 623
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M K RS+G+G+V ++ E+AQKA+ +MNGK ++G++++V R +R L R+
Sbjct: 222 VMKDEKGRSRGFGFVNYAHHEDAQKAVNEMNGKEINGKILYVG--RAQKRLERQGELKRK 279
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 37 SFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 88
+ L + +KG SKGYG+V F T+E A +A+ MNG LL+ R +FV +
Sbjct: 124 NILSCKVVCDEKG---SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGH 172
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 32/42 (76%), Gaps = 1/42 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M G ++SKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 325 VMTDG-SQSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>gi|259490527|ref|NP_001159310.1| uncharacterized protein LOC100304402 [Zea mays]
gi|223943329|gb|ACN25748.1| unknown [Zea mays]
gi|413938710|gb|AFW73261.1| chloroplast protein synthesis 4 [Zea mays]
Length = 398
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 34/56 (60%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
L IIMD+ RSKGY +V ++TEE AL MNG++++G +I VD + R
Sbjct: 325 LVEVKIIMDRISKRSKGYAFVEYTTEEAGGAALKAMNGQIINGWMIVVDVAKTRSR 380
>gi|170091988|ref|XP_001877216.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648709|gb|EDR12952.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 218
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+AT+ MD+ +S+G+GYV F+T + +KAL MNG+ +DGR I VD P
Sbjct: 27 SATVQMDRNTGKSRGFGYVHFTTPDAVEKALQ-MNGQEIDGRAIKVDRSLP 76
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 12 VTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKAL 71
VTED V+ +F +D + + + D+ R KG+GYV F + A+KA
Sbjct: 110 VTEDTVWSFF-------------NDYGVKSVRLPTDRETGRPKGFGYVEFEDIDGAKKAF 156
Query: 72 ADMNGKLLDGRVIFVDNVRP 91
NG ++GR I +D +P
Sbjct: 157 EAANGSEIEGRSIRLDYSQP 176
>gi|328713207|ref|XP_001947071.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++MD G RSKG+G+V FS+ EEA KA+ DMNG+++ + ++V
Sbjct: 313 ITSAKVMMDDG--RSKGFGFVCFSSPEEATKAVTDMNGRIVGTKPLYV 358
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 52 RSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+SKGYG+V F E+ A +++ +NG LL+G+ +FV
Sbjct: 128 QSKGYGFVHFEMEQSATQSIEKVNGMLLNGKKVFV 162
>gi|319765042|ref|YP_004128979.1| rnp-1 like RNA-binding protein [Alicycliphilus denitrificans BC]
gi|330827234|ref|YP_004390537.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans
K601]
gi|317119603|gb|ADV02092.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans BC]
gi|329312606|gb|AEB87021.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans
K601]
Length = 144
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+A ++M++ RSKG+G+V ++ +AQ A+ MNG+ L GR I V+ RP
Sbjct: 31 SAKVMMERDTGRSKGFGFVEMGSDADAQAAINGMNGQSLGGRSIVVNEARP 81
>gi|297743165|emb|CBI36032.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M SKG+G+V FST EEAQKAL +NG LL GR +++
Sbjct: 340 VMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYI 381
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+IM G +S+G+G+V F + +EA+KA+ +NG +L + +FV
Sbjct: 234 GTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFV 279
>gi|432907583|ref|XP_004077665.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 635
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ DMNGK L+GR ++V
Sbjct: 222 VMTDDTGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYV 263
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV 170
>gi|356517068|ref|XP_003527212.1| PREDICTED: uncharacterized protein LOC100777821 [Glycine max]
Length = 182
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L AFSQFG++ E + +I D+ RS+G+G+VTF
Sbjct: 24 LEKAFSQFGEIVE---------------------------SKVINDRETGRSRGFGFVTF 56
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+TE+ + A+ MNG+ LDGR I V+ +
Sbjct: 57 ATEQAMRDAIEGMNGQNLDGRNITVNEAQS 86
>gi|320580282|gb|EFW94505.1| RNA binding protein [Ogataea parapolymorpha DL-1]
Length = 398
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
++ D S+ +G+V FS++E+ QKAL +MNGK LDGR+I V P +
Sbjct: 158 VMTDPATGLSRCFGFVRFSSDEDRQKALVEMNGKWLDGRLIRVALATPKHQ 208
>gi|351723185|ref|NP_001236758.1| uncharacterized protein LOC100499841 [Glycine max]
gi|255627057|gb|ACU13873.1| unknown [Glycine max]
Length = 143
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 44/93 (47%), Gaps = 29/93 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAFS FG V + A +I D+ RS+G+G+V F
Sbjct: 52 LKDAFSGFGDVVD---------------------------AKVITDRDSGRSRGFGFVNF 84
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD--NVRPS 92
S +E A AL+ M+GK L+GR I V N +PS
Sbjct: 85 SNDESASSALSAMDGKDLNGRSIRVSYANDKPS 117
>gi|449438165|ref|XP_004136860.1| PREDICTED: uncharacterized protein LOC101215898 [Cucumis sativus]
gi|449478936|ref|XP_004155458.1| PREDICTED: uncharacterized protein LOC101227324 [Cucumis sativus]
Length = 211
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS----RR 94
L A +++DK RS+G+G+VTF ++ +A+ MNG LDGR I VD +P+ R
Sbjct: 33 LVEAKVVVDKFSGRSRGFGFVTFDEKKAMDEAIKAMNGMDLDGRSITVDKAQPNQGSGRD 92
Query: 95 YNTDAP 100
++ D P
Sbjct: 93 HDGDRP 98
>gi|21309|emb|CAA41023.1| 28kD RNA binding protein [Spinacia oleracea]
Length = 226
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 8/74 (10%)
Query: 24 QPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRV 83
+ LF H ++S A ++ D+ RS+G+G+VT S+E E A+A ++G+ LDGR
Sbjct: 159 EQLFSEHGKVVS------ARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRA 212
Query: 84 IFVD--NVRPSRRY 95
+ V+ RP R +
Sbjct: 213 VRVNVAEERPRRAF 226
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
A +I ++ +RS+G+G+VT ST EEA+KA+ +NG +DGR + V+ P
Sbjct: 77 AEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAP 126
>gi|42567949|ref|NP_197404.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332005259|gb|AED92642.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 172
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 44/95 (46%), Gaps = 29/95 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L FS+FGQVT II ++ +S GYGYV F
Sbjct: 93 LKKVFSEFGQVTN---------------------------VKIIANERTRQSLGYGYVWF 125
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP--SRR 94
+++E+AQ A+ MNGK DGR I V +P SRR
Sbjct: 126 NSKEDAQSAVEAMNGKFFDGRFILVKFGQPGLSRR 160
>gi|115448473|ref|NP_001048016.1| Os02g0730800 [Oryza sativa Japonica Group]
gi|46390469|dbj|BAD15930.1| RNA recognition motif (RRM)-containing protein-like [Oryza sativa
Japonica Group]
gi|46390865|dbj|BAD16369.1| RNA recognition motif (RRM)-containing protein-like [Oryza sativa
Japonica Group]
gi|113537547|dbj|BAF09930.1| Os02g0730800 [Oryza sativa Japonica Group]
gi|218191513|gb|EEC73940.1| hypothetical protein OsI_08808 [Oryza sativa Indica Group]
Length = 399
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 34/56 (60%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
L IIMDK RSKGY ++ ++TEE AL MNG++++G +I VD + R
Sbjct: 321 LVEVKIIMDKISKRSKGYAFIEYTTEEAGGAALKAMNGQIINGWMIVVDVAKHRSR 376
>gi|149240785|ref|XP_001526223.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450346|gb|EDK44602.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 601
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
L A ++ D +RS+GYG+VTF +E+A+ AL MNG+ L GR I +
Sbjct: 219 LKQAHVMWDMQTSRSRGYGFVTFGKQEDAENALQSMNGEWLGGRAIRCN 267
>gi|115480705|ref|NP_001063946.1| Os09g0565200 [Oryza sativa Japonica Group]
gi|52076131|dbj|BAD46644.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|52076138|dbj|BAD46651.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|113632179|dbj|BAF25860.1| Os09g0565200 [Oryza sativa Japonica Group]
gi|215697272|dbj|BAG91266.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737486|dbj|BAG96616.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218202645|gb|EEC85072.1| hypothetical protein OsI_32419 [Oryza sativa Indica Group]
gi|222642113|gb|EEE70245.1| hypothetical protein OsJ_30367 [Oryza sativa Japonica Group]
Length = 322
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSRR 94
A ++ D+ RS+G+G+VT +T+EE A+A ++G+ LDGR + V+ RP RR
Sbjct: 266 ARVVYDRETGRSRGFGFVTMATQEELDDAIAALDGQSLDGRALRVNVAEERPPRR 320
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 33/48 (68%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+I ++ +RS+G+G+VT ST EEA+KA+ + +DGR++ V+ P
Sbjct: 174 VIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDVDGRLLTVNKAAP 221
>gi|387861095|gb|AFK08577.1| glycine-rich RNA binding protein 2b [Camelina sativa]
gi|387861101|gb|AFK08580.1| glycine-rich RNA binding protein 2b [Camelina sativa]
Length = 156
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 29/93 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAF+ FG+V + A +I+D+ RS+G+G+V F
Sbjct: 52 LRDAFAHFGEVVD---------------------------AKVIVDRETGRSRGFGFVNF 84
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD--NVRPS 92
S E A A+++M+GK L+GR I V+ N RPS
Sbjct: 85 SDETAASAAISEMDGKDLNGRNIRVNPANDRPS 117
>gi|147899475|ref|NP_001085069.1| polyadenylate-binding protein 1-B [Xenopus laevis]
gi|82236793|sp|Q6IP09.1|PABPB_XENLA RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein 1-B; Short=xPABP1-B;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-B
gi|47940242|gb|AAH72110.1| MGC79060 protein [Xenopus laevis]
gi|80476254|gb|AAI08463.1| MGC79060 protein [Xenopus laevis]
Length = 633
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +S+G+G+V+F E+AQKA+ DMNGK L+G+ IFV
Sbjct: 222 VMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFV 263
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>gi|47217896|emb|CAG05018.1| unnamed protein product [Tetraodon nigroviridis]
Length = 558
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ DMNGK L+GR ++V
Sbjct: 209 VMTDDSGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYV 250
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T E A++A+ MNG LL+ R +FV
Sbjct: 112 ILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV 157
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 307 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 352
>gi|239611503|gb|EEQ88490.1| glycine-rich RNA-binding protein [Ajellomyces dermatitidis ER-3]
gi|327348484|gb|EGE77341.1| glycine-rich RNA-binding protein [Ajellomyces dermatitidis ATCC
18188]
Length = 143
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 33/46 (71%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
AT++ D+ NRS+G+G+V F+++ EA A+ MN + DGRVI VD
Sbjct: 31 ATVVKDRDTNRSRGFGFVRFASDTEADTAMNAMNNQEFDGRVIRVD 76
>gi|440797930|gb|ELR19004.1| polyadenylate-binding protein family protein [Acanthamoeba
castellanii str. Neff]
Length = 462
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D GK SKGYG+V + T E A A+A +NGK+L+G++++V
Sbjct: 124 ILSCKVVTD-GKGNSKGYGFVHYETSEAADSAIAKVNGKMLNGKIVYV 170
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 30/42 (71%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M K S+G+G+V ++ E+A KA+++MNGK++ + I+V
Sbjct: 321 VMSDDKGNSRGFGFVCYTNPEDASKAVSEMNGKMVANKPIYV 362
>gi|261205092|ref|XP_002627283.1| glycine-rich RNA-binding protein [Ajellomyces dermatitidis
SLH14081]
gi|239592342|gb|EEQ74923.1| glycine-rich RNA-binding protein [Ajellomyces dermatitidis
SLH14081]
Length = 143
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 33/46 (71%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
AT++ D+ NRS+G+G+V F+++ EA A+ MN + DGRVI VD
Sbjct: 31 ATVVKDRDTNRSRGFGFVRFASDTEADTAMNAMNNQEFDGRVIRVD 76
>gi|392568536|gb|EIW61710.1| RNA-binding domain-containing protein [Trametes versicolor
FP-101664 SS1]
Length = 345
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 31 YFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 90
+F S + +A +IM G NRS GYG+V+ +T E AQKA+ ++ + LDGR + V+ +
Sbjct: 49 FFAPVQSDVLSAQVIMRSG-NRSAGYGFVSLTTLEAAQKAVELLDKQELDGRTVIVEVAK 107
Query: 91 PSRRYNTD 98
P+ + + +
Sbjct: 108 PAEQKDQE 115
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 49 GKNR-SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
GK R SKGYG+V EEE +KA+ + GK + GR I V
Sbjct: 269 GKPRKSKGYGFVDVGDEEEQKKAIEALQGKEVGGRAIAV 307
>gi|299473651|emb|CBN78045.1| poly(A) binding protein [Ectocarpus siliculosus]
Length = 688
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV--DNVRPSRRYNTD 98
A ++ + N+SKG+G+V FS EEA KA+ +MNGK+L + I+V R RR +
Sbjct: 369 ARVMVDNSNNNQSKGFGFVCFSAPEEATKAITEMNGKMLLNKPIYVALAQRREVRRTQLE 428
Query: 99 APLARQSAQSP 109
A A+++ P
Sbjct: 429 AQFAQRTGGMP 439
>gi|4704605|gb|AAD28176.1|AF109917_1 glycine-rich RNA-binding protein [Picea glauca]
Length = 155
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 34/49 (69%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ + II D+ RS+G+G+VTF+ E+ + A+ MNGK+LDGR I V+
Sbjct: 34 VVESKIISDRETGRSRGFGFVTFNDEQSMRDAIDAMNGKMLDGRSITVN 82
>gi|374107618|gb|AEY96526.1| FADR307Wp [Ashbya gossypii FDAG1]
Length = 565
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 7 SQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEE 66
S+F DL +SQ LF L F+ S A I+ D+G SKGYG+V F E E
Sbjct: 139 SEFSIFVGDLAPNVTESQ-LFEL--FISRYSSTLNAKIVFDQGTGVSKGYGFVKFGNEAE 195
Query: 67 AQKALADMNGKLLDGRVIFVDNVRPSR 93
Q++L +M G L+GR I V ++
Sbjct: 196 QQRSLLEMQGVFLNGRAIRVSTTSKNK 222
>gi|430741539|ref|YP_007200668.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
gi|430013259|gb|AGA24973.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
Length = 119
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+A II+D+ NRSKG+G+V T+ +AQ A+ +NG DGR + V+ +P
Sbjct: 31 SAQIIVDRDTNRSKGFGFVEMDTDAQAQAAIQGLNGHDHDGRNLTVNEAKP 81
>gi|332531199|ref|ZP_08407112.1| RNP-1 like RNA-binding protein [Hylemonella gracilis ATCC 19624]
gi|332039306|gb|EGI75719.1| RNP-1 like RNA-binding protein [Hylemonella gracilis ATCC 19624]
Length = 131
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L AF QFG VT +A ++M++ RSKG+G+V
Sbjct: 19 LEQAFGQFGAVT---------------------------SAKVMMERDTGRSKGFGFVEM 51
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
++ EAQ A+ +NG+ L GR + V+ RP
Sbjct: 52 GSDAEAQAAINGLNGQPLSGRNVVVNEARP 81
>gi|169861416|ref|XP_001837342.1| hypothetical protein CC1G_01254 [Coprinopsis cinerea okayama7#130]
gi|116501363|gb|EAU84258.1| hypothetical protein CC1G_01254 [Coprinopsis cinerea okayama7#130]
Length = 346
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 19/103 (18%)
Query: 7 SQFGQVTEDLVYFYFKSQ--PLFP-----LHYFLISDSF----------LFAATIIMDKG 49
+Q QVTE+ K+Q P F L Y + + +A++I+ +G
Sbjct: 4 AQAAQVTENGAPAVEKTQEAPGFKVFAGNLAYTTTDEGLKAFFEPVQADILSASVIL-RG 62
Query: 50 KNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
RS GYG+V +TEE AQKA+ +N K LDGR + V+ +P+
Sbjct: 63 -TRSAGYGFVALATEEAAQKAVDALNKKELDGRQVIVEIAKPA 104
Score = 39.3 bits (90), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 52 RSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+SKGYG+V +EE +KA+A ++GK + GR I V
Sbjct: 267 KSKGYGFVDVGSEENQKKAIAALDGKDIAGRAIAV 301
>gi|21388660|dbj|BAC00786.1| glycine-rich RNA-binding protein [Physcomitrella patens]
Length = 178
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+I D+ RS+G+G+VTF+ E +A+ DMNGK LDGR I V+
Sbjct: 34 CKVITDRETGRSRGFGFVTFADENSMNEAIKDMNGKELDGRNITVN 79
>gi|222623613|gb|EEE57745.1| hypothetical protein OsJ_08262 [Oryza sativa Japonica Group]
Length = 369
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 34/56 (60%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
L IIMDK RSKGY ++ ++TEE AL MNG++++G +I VD + R
Sbjct: 291 LVEVKIIMDKISKRSKGYAFIEYTTEEAGGAALKAMNGQIINGWMIVVDVAKHRSR 346
>gi|167384180|ref|XP_001736837.1| ribonucleoprotein, chloroplast [Entamoeba dispar SAW760]
gi|165900615|gb|EDR26908.1| ribonucleoprotein, chloroplast, putative [Entamoeba dispar
SAW760]
Length = 320
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%)
Query: 43 TIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+IM K SKG+GYV F TEE AQKAL + N ++L GR I VD
Sbjct: 32 VVIMKKYDGSSKGFGYVEFDTEESAQKALREGNNEMLRGRNIRVD 76
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
A+++ DK N+SKGYG+V F + A+ N L++ R I V
Sbjct: 261 ASVVYDKDTNKSKGYGFVVFDNSSDQHIAIEQFNNYLVECRKIMV 305
>gi|115472673|ref|NP_001059935.1| Os07g0549800 [Oryza sativa Japonica Group]
gi|28564803|dbj|BAC57733.1| RNA recognition motif (RRM)-containing protein-like [Oryza sativa
Japonica Group]
gi|113611471|dbj|BAF21849.1| Os07g0549800 [Oryza sativa Japonica Group]
gi|125600644|gb|EAZ40220.1| hypothetical protein OsJ_24665 [Oryza sativa Japonica Group]
gi|215767980|dbj|BAH00209.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 133
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 27/106 (25%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L +AFS+FGQV E A +I D+ S+G+G+V +
Sbjct: 51 LREAFSKFGQVIE---------------------------ARVITDRISGYSRGFGFVKY 83
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQSAQ 107
+T EEA + + M+GK LDG VIF + + P A S Q
Sbjct: 84 ATVEEAGEGIKGMDGKFLDGWVIFAEYAKQREAQQPAQPAASTSYQ 129
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK ++G+VIFV R ++ A L R+
Sbjct: 222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKVIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|119492333|ref|XP_001263582.1| glycine-rich RNA-binding protein, putative [Neosartorya fischeri
NRRL 181]
gi|119411742|gb|EAW21685.1| glycine-rich RNA-binding protein, putative [Neosartorya fischeri
NRRL 181]
Length = 118
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV--RPSR 93
A ++ D+ NRS+G+G+V FS++ EA A+ MN + DGR I VD RP+R
Sbjct: 31 AIVVKDRDTNRSRGFGFVRFSSDTEADAAMDAMNNQEFDGRTIRVDKASERPAR 84
>gi|390363097|ref|XP_003730296.1| PREDICTED: uncharacterized protein LOC753008, partial
[Strongylocentrotus purpuratus]
Length = 239
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
++MD NRSKGYG++TF E+A++AL +NG L GR + V++V AP
Sbjct: 6 LMMDTDANRSKGYGFITFHDAEDAKRALDQLNGFELAGRPMKVNHVTERNEQGQQAP 62
>gi|302307679|ref|NP_984403.2| ADR307Wp [Ashbya gossypii ATCC 10895]
gi|299789115|gb|AAS52227.2| ADR307Wp [Ashbya gossypii ATCC 10895]
Length = 566
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 7 SQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEE 66
S+F DL +SQ LF L F+ S A I+ D+G SKGYG+V F E E
Sbjct: 139 SEFSIFVGDLAPNVTESQ-LFEL--FISRYSSTLNAKIVFDQGTGVSKGYGFVKFGNEAE 195
Query: 67 AQKALADMNGKLLDGRVIFVDNVRPSR 93
Q++L +M G L+GR I V ++
Sbjct: 196 QQRSLLEMQGVFLNGRAIRVSTTSKNK 222
>gi|167520490|ref|XP_001744584.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776915|gb|EDQ90533.1| predicted protein [Monosiga brevicollis MX1]
Length = 86
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
L II D+ RS+G+G+VTF ++E+AQ+A +NG +DGR + VD
Sbjct: 28 LEKCIIIHDRQNGRSRGFGFVTFVSDEDAQRAREKLNGARIDGRNVRVD 76
>gi|50289655|ref|XP_447259.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526568|emb|CAG60192.1| unnamed protein product [Candida glabrata]
Length = 416
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
A ++ D RS+GYG+V+FS +EEAQKA+ M GK L GR I ++
Sbjct: 175 AHVMWDMQTGRSRGYGFVSFSNQEEAQKAMDAMQGKDLSGRQIRIN 220
>gi|168035555|ref|XP_001770275.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678492|gb|EDQ64950.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 106
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+I D+ RS+G+G+VTF+ E +A+ DMNGK LDGR I V+
Sbjct: 31 CKVITDRETGRSRGFGFVTFADENSMNEAIKDMNGKELDGRNITVN 76
>gi|115473215|ref|NP_001060206.1| Os07g0602600 [Oryza sativa Japonica Group]
gi|113611742|dbj|BAF22120.1| Os07g0602600 [Oryza sativa Japonica Group]
gi|222637411|gb|EEE67543.1| hypothetical protein OsJ_25023 [Oryza sativa Japonica Group]
Length = 238
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 34/48 (70%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ A II+D+ +SKGYG++T+++ EEA A+ M+GK L GR++ V
Sbjct: 57 VLEARIIIDRDTGKSKGYGFITYTSSEEAAAAVTAMDGKDLQGRIVRV 104
>gi|2665654|gb|AAB88449.1| polyadenylate binding protein [Petromyzon marinus]
Length = 630
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 40 FAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
+ ++MD+G +SKG+G+V+F E+AQKA+ +MN K L+GR I+V + T+
Sbjct: 219 LSVKVMMDEG-GKSKGFGFVSFERHEDAQKAVDEMNTKELNGRAIYVGRAQKKAERQTE 276
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 37/48 (77%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M++G RS+G+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 321 ITSAKVMMEEG--RSRGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYV 366
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|73992493|ref|XP_534430.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Canis lupus
familiaris]
Length = 611
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M S+G+G+V F EEAQKA+ DMNGK + GR+++V R +R + L R+
Sbjct: 222 VMRDDSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVG--RAQKRVERQSELKRR 279
Query: 105 SAQ 107
Q
Sbjct: 280 FEQ 282
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 37 SFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
+ L + D G S+G+G+V F T E AQ+A+ MNG LL+ R +FV + + SRR
Sbjct: 124 NILSCKVVCDDHG---SRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFK-SRR 177
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + +M +G SKG+G+V FS+ EEA KA+ +MNG++L + ++V
Sbjct: 319 VITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYV 365
>gi|387861093|gb|AFK08576.1| glycine-rich RNA binding protein 2a [Camelina sativa]
gi|387861099|gb|AFK08579.1| glycine-rich RNA binding protein 2a [Camelina sativa]
Length = 160
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 29/93 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAF+ FG+V + A +I+D+ RS+G+G+V F
Sbjct: 52 LRDAFAHFGEVVD---------------------------AKVIVDRETGRSRGFGFVNF 84
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD--NVRPS 92
S E A A+++M+GK L+GR I V+ N RPS
Sbjct: 85 SDETAASAAISEMDGKDLNGRNIRVNQANDRPS 117
>gi|30692256|ref|NP_849524.1| glycine-rich RNA-binding protein 8 [Arabidopsis thaliana]
gi|332661646|gb|AEE87046.1| glycine-rich RNA-binding protein 8 [Arabidopsis thaliana]
Length = 92
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ II D+ RS+G+G+VTF E+ + A+ +MNGK LDGRVI V+ +
Sbjct: 35 SKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQS 84
>gi|428181461|gb|EKX50325.1| RNA recognition motif 1 [Guillardia theta CCMP2712]
Length = 199
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 90
A +++D+ RS+G+G+VTFS E A KA+ +MNG+ L GR I V + R
Sbjct: 116 AKVMVDRYSGRSRGFGFVTFSEEHSAAKAIEEMNGRELLGRQITVTHAR 164
>gi|395829049|ref|XP_003787673.1| PREDICTED: polyadenylate-binding protein 1-like [Otolemur
garnettii]
Length = 611
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M S+G+G+V F T EEAQKA+ MNGK + GR+++V R +R L R+
Sbjct: 222 VMRDSSGHSRGFGFVNFETHEEAQKAVVHMNGKEVSGRLLYVG--RAQKRVERQNELKRR 279
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + +M +G SKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 319 MITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365
Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
S+G+G+V F T E AQ A+ MNG LL+ +FV + + SRR
Sbjct: 137 SRGFGFVHFETHEAAQHAINTMNGMLLNDHKVFVGHFK-SRR 177
>gi|121595278|ref|YP_987174.1| RNP-1 like RNA-binding protein [Acidovorax sp. JS42]
gi|222111562|ref|YP_002553826.1| rnp-1 like RNA-binding protein [Acidovorax ebreus TPSY]
gi|120607358|gb|ABM43098.1| RNP-1 like RNA-binding protein [Acidovorax sp. JS42]
gi|221731006|gb|ACM33826.1| RNP-1 like RNA-binding protein [Acidovorax ebreus TPSY]
Length = 102
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 35/51 (68%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+A ++M++ RSKG+G+V ++ EAQ A+ +NG+ +DGR + V+ RP
Sbjct: 31 SAKVMMERDTGRSKGFGFVEMGSDSEAQDAINGLNGRSVDGRALTVNVARP 81
>gi|410904819|ref|XP_003965889.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 636
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
++ D G +SKG+G+V+F E+AQKA+ DMNGK L+GR ++V
Sbjct: 222 VMTDDG-GKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYV 263
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV 170
>gi|357112177|ref|XP_003557886.1| PREDICTED: ribonucleoprotein At2g37220, chloroplastic-like
[Brachypodium distachyon]
Length = 272
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV---DNVRPSRRY 95
+ A +I D+ RS+G+G+VT+ + EE +KA+++++G LDGR I V + +P R Y
Sbjct: 213 VLGARVIYDRESGRSRGFGFVTYGSSEEVEKAVSNLDGTDLDGRQIRVTVAEARQPRREY 272
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
+I DK RS+G+G+VT ST EE ++A+ +NG +LDGR I V++ P R
Sbjct: 108 VIYDKLTGRSRGFGFVTMSTVEEVEEAVEQLNGYVLDGRTIKVNSGPPPPR 158
>gi|2267593|gb|AAB63589.1| glycine-rich RNA-binding protein [Oryza sativa Indica Group]
Length = 165
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 36/55 (65%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
+ + II D+ RS+G+G+VTFS+E+ + A+ M+GK LDGR I V+ + R
Sbjct: 34 ILESKIINDRETGRSRGFGFVTFSSEQAMRDAIEGMSGKELDGRNITVNEAQSRR 88
>gi|10799202|gb|AAG23220.1| glycine-rich RNA-binding protein [Sorghum bicolor]
Length = 170
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+I D+ RS+G+G+VTFS+E+ A+ +MNGK LDGR I V+
Sbjct: 39 VITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVN 82
>gi|261351264|gb|ACX71299.1| RNA-binding protein RZ-1 [Capsicum annuum]
Length = 202
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
L A +++DK RS+G+G+VTF + + A+ MNG LDGR I VD +P
Sbjct: 33 LVDAKVVLDKFSGRSRGFGFVTFDDKRAMEDAIEAMNGMDLDGRAITVDKAQP 85
>gi|260221788|emb|CBA30701.1| Glycine-rich RNA-binding protein GRP1A [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 149
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 34/51 (66%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+A ++M++ RSKG+G+V ++ EAQ A++ MNG+ GR + V+ RP
Sbjct: 37 SAKVMMERDTGRSKGFGFVEMGSDAEAQTAISAMNGQQFGGRGLVVNEARP 87
>gi|414884784|tpg|DAA60798.1| TPA: hypothetical protein ZEAMMB73_633133 [Zea mays]
Length = 244
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 29 LHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
L F + +AT+ G ++SKGYG+VTFS+EEE + A+A N L+G++I V+
Sbjct: 184 LKNFFSEKGNILSATVSHIPGTSKSKGYGFVTFSSEEEVEAAVATFNNAELEGQLIRVN 242
>gi|378727388|gb|EHY53847.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 179
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
A ++ D+ NRS+G+G+V F+T+ EA +A+ MN DGR+I VD+ + S
Sbjct: 31 AVVVKDRDTNRSRGFGFVRFATKAEADEAMQRMNNTQFDGRLIRVDHAQDS 81
>gi|301606181|ref|XP_002932728.1| PREDICTED: polyadenylate-binding protein 1-B-like [Xenopus
(Silurana) tropicalis]
Length = 447
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +G RSKG+G+V FST EA+KAL++MNGK+L + ++V R+ LA+Q
Sbjct: 165 VMREG-GRSKGFGFVCFSTPAEARKALSEMNGKILASKPLYV--AWAQRKQERQVSLAQQ 221
Query: 105 SAQSPEE 111
Q E+
Sbjct: 222 YTQRMEK 228
>gi|195577213|ref|XP_002078467.1| GD23448 [Drosophila simulans]
gi|194190476|gb|EDX04052.1| GD23448 [Drosophila simulans]
Length = 608
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDA 99
A +IMD RSKGYG++T+ ++A+KAL +NG L GR++ V NV NT +
Sbjct: 377 AIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMKVGNVTERLDMNTTS 435
>gi|365088445|ref|ZP_09327889.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
gi|363417101|gb|EHL24188.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
Length = 111
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDA 99
+A ++MD+ RSKG+G+V + E AQ A++ ++G +DGR I V+ RP R +DA
Sbjct: 31 SAKVMMDRETGRSKGFGFVEMANAEVAQAAISGLHGMSVDGRTIVVNLARP-REERSDA 88
>gi|387913868|gb|AFK10543.1| cold-inducible RNA-binding protein-like protein [Callorhinchus
milii]
Length = 178
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLAR 103
+I ++ RSKG G+VTF ++A+ ALA MNGK +DGR I VD+ S + + +
Sbjct: 36 VIRERDTQRSKGLGFVTFENPDDARDALAGMNGKTVDGRQIRVDHAGKS---SGNRSRSY 92
Query: 104 QSAQS 108
QS QS
Sbjct: 93 QSGQS 97
>gi|399031232|ref|ZP_10731328.1| RRM domain-containing RNA-binding protein [Flavobacterium sp.
CF136]
gi|398070499|gb|EJL61796.1| RRM domain-containing RNA-binding protein [Flavobacterium sp.
CF136]
Length = 119
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ II DK RSKG+G+V + ++EAQKA+ ++NG + GR I V+ P
Sbjct: 29 SVKIITDKFTGRSKGFGFVEMTNDDEAQKAIDELNGATVQGRAIVVNKSEP 79
>gi|381186866|ref|ZP_09894434.1| RNA-binding region RNP-1 [Flavobacterium frigoris PS1]
gi|379651172|gb|EIA09739.1| RNA-binding region RNP-1 [Flavobacterium frigoris PS1]
Length = 120
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ II DK RSKG+G+V + ++EAQKA+ ++NG + GR I V+ P
Sbjct: 29 SVKIITDKFTGRSKGFGFVEMTNDDEAQKAIDELNGATVQGRAIVVNKSEP 79
>gi|122890334|emb|CAJ74077.1| RNA recognition motif 1 [Guillardia theta]
Length = 199
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 90
A +++D+ RS+G+G+VTFS E A KA+ +MNG+ L GR I V + R
Sbjct: 116 AKVMVDRYSGRSRGFGFVTFSEEHSAAKAIEEMNGRELLGRQITVTHAR 164
>gi|544423|sp|Q99070.1|GRP2_SORBI RecName: Full=Glycine-rich RNA-binding protein 2
gi|21625|emb|CAA40862.1| glycine-rich RNA-binding protein [Sorghum bicolor]
Length = 168
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+I D+ RS+G+G+VTFS+E+ A+ +MNGK LDGR I V+
Sbjct: 39 VITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVN 82
>gi|408398205|gb|EKJ77338.1| hypothetical protein FPSE_02416 [Fusarium pseudograminearum
CS3096]
Length = 128
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 29/93 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L FS+FG+VT+ + I+ D+ R++G+G+VTF
Sbjct: 18 LRQTFSEFGEVTDSI---------------------------IMRDRETGRARGFGFVTF 50
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD--NVRPS 92
STEE+A A+ +N + LDGR I V+ N RP+
Sbjct: 51 STEEQANAAVDALNEQELDGRRIRVNVANARPA 83
>gi|326514928|dbj|BAJ99825.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326517426|dbj|BAK00080.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 153
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSRRYNTDA 99
A +I D+ SKG+G+V + T E+A K + M+G+ LDG VIF + RP +
Sbjct: 77 ARVITDRVTGFSKGFGFVRYVTVEDAAKGIEGMDGEFLDGWVIFAEYARPRPPPQMGGAT 136
Query: 100 PLARQSAQSP 109
P +QS SP
Sbjct: 137 PQPQQSWGSP 146
>gi|71000080|ref|XP_754757.1| glycine-rich RNA-binding protein [Aspergillus fumigatus Af293]
gi|66852394|gb|EAL92719.1| glycine-rich RNA-binding protein, putative [Aspergillus fumigatus
Af293]
gi|159127765|gb|EDP52880.1| glycine-rich RNA-binding protein, putative [Aspergillus fumigatus
A1163]
Length = 118
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV--RPSR 93
A ++ D+ NRS+G+G+V FS++ EA A+ MN + DGR I VD RP+R
Sbjct: 31 AIVVKDRDTNRSRGFGFVRFSSDTEADAAMDAMNNQEFDGRTIRVDKASERPAR 84
>gi|344924967|ref|ZP_08778428.1| RNA-binding region RNP-1 [Candidatus Odyssella thessalonicensis
L13]
Length = 94
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 26 LFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIF 85
LF H ++S A +I DK RSKG+G+V +E++A A+ +NG+ L+GR +
Sbjct: 22 LFGDHGAVVS------AKVITDKMSGRSKGFGFVEMESEQQANSAMEKLNGQDLNGRRMN 75
Query: 86 VDNVRPSRRYNTDAPLARQ 104
V RP P+ R+
Sbjct: 76 VAIARPKEEGAERRPMGRR 94
>gi|24582417|ref|NP_723245.1| CG11266, isoform C [Drosophila melanogaster]
gi|24582419|ref|NP_723246.1| CG11266, isoform D [Drosophila melanogaster]
gi|24582421|ref|NP_723247.1| CG11266, isoform F [Drosophila melanogaster]
gi|24582423|ref|NP_723248.1| CG11266, isoform G [Drosophila melanogaster]
gi|45550943|ref|NP_723244.2| CG11266, isoform E [Drosophila melanogaster]
gi|22945836|gb|AAN10616.1| CG11266, isoform C [Drosophila melanogaster]
gi|22945837|gb|AAN10617.1| CG11266, isoform D [Drosophila melanogaster]
gi|22945838|gb|AAN10618.1| CG11266, isoform F [Drosophila melanogaster]
gi|22945839|gb|AAN10619.1| CG11266, isoform G [Drosophila melanogaster]
gi|45445036|gb|AAN10615.2| CG11266, isoform E [Drosophila melanogaster]
Length = 287
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNT 97
A +IMD RSKGYG++T+ ++A+KAL +NG L GR++ V NV NT
Sbjct: 56 AIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMKVGNVTERLDMNT 112
>gi|297741463|emb|CBI32594.3| unnamed protein product [Vitis vinifera]
Length = 121
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L AFSQFG++ E + II D+ RS+G+G+VTF
Sbjct: 24 LERAFSQFGEILE---------------------------SKIINDRETGRSRGFGFVTF 56
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
S+E+ + A+ MNG+ LDGR I V+ +
Sbjct: 57 SSEQSMRDAIEGMNGQNLDGRNITVNEAQS 86
>gi|221048043|gb|ACL98129.1| hyperosmotic glycine rich protein [Epinephelus coioides]
Length = 175
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 96
+I DK RS+G+G+V + ++A+ AL MNGK LDGR I VD R N
Sbjct: 36 VIRDKETGRSRGFGFVKYDNCDDAKDALEGMNGKTLDGRAIRVDEAGKGGRSN 88
>gi|354545437|emb|CCE42165.1| hypothetical protein CPAR2_807140 [Candida parapsilosis]
Length = 420
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 36 DSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
DSF A ++ D +RS+GYG+VTFS +E+A+ AL MNG L GR I +
Sbjct: 170 DSFK-EAHVMWDMQTSRSRGYGFVTFSKQEDAELALQTMNGAWLGGRAIRCN 220
>gi|67479333|ref|XP_655048.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|56472154|gb|EAL49662.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|449707219|gb|EMD46918.1| RNA recognition domain containing protein [Entamoeba histolytica
KU27]
Length = 320
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 31/45 (68%)
Query: 43 TIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+IM++ SKG+GYV F TEE AQKAL + N ++L GR I VD
Sbjct: 32 VVIMERYDGASKGFGYVEFDTEESAQKALREGNNEMLRGRNIRVD 76
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
A+++ D+ N+SKGYG+V F T + A+ N L++GR I V
Sbjct: 261 ASVVYDRDTNKSKGYGFVVFDTSIDQHTAIEQFNNYLVEGRKIMV 305
>gi|356515780|ref|XP_003526576.1| PREDICTED: protein boule-like [Glycine max]
Length = 287
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGR-----VIFVDNVRPS 92
+ A II DK +SKGYG+VTF +E A++A AD N ++DGR + + RPS
Sbjct: 64 ILEAVIITDKNTGKSKGYGFVTFCGQESARRACADPN-PIIDGRRANCNIASLGRTRPS 121
>gi|296121725|ref|YP_003629503.1| RNP-1 like RNA-binding protein [Planctomyces limnophilus DSM
3776]
gi|296014065|gb|ADG67304.1| RNP-1 like RNA-binding protein [Planctomyces limnophilus DSM
3776]
Length = 104
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+A ++MD+ RSKG+G+V F + A A+ MNGK ++GR + V+ RP
Sbjct: 31 SAQVVMDRETGRSKGFGFVEFGDSQSASDAINAMNGKDVNGRALTVNEARP 81
>gi|121705230|ref|XP_001270878.1| glycine-rich RNA-binding protein, putative [Aspergillus clavatus
NRRL 1]
gi|119399024|gb|EAW09452.1| glycine-rich RNA-binding protein, putative [Aspergillus clavatus
NRRL 1]
Length = 133
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 27/86 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L F QFGQV E A ++ D+ NRS+G+G+V F
Sbjct: 18 LRQGFEQFGQVEE---------------------------AIVVKDRDTNRSRGFGFVRF 50
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD 87
S++ +A KA+ MN + DGR I VD
Sbjct: 51 SSDSDADKAMDAMNNQEFDGRTIRVD 76
>gi|395506976|ref|XP_003757804.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 594
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M S+G+G+V F EEAQKA+ MNGK L GRV++V R +R L R+
Sbjct: 207 VMVDENGHSRGFGFVNFEKHEEAQKAVNSMNGKALGGRVLYVG--RAQKRTERQGELKRR 264
Query: 105 SAQSPEE 111
Q +E
Sbjct: 265 FEQMKQE 271
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 88
L ++ D+ N S+G+G+V F T+E A +A++ MNG LL+ R +FV +
Sbjct: 110 LCRVAVVCDE--NGSRGFGFVHFETQEAANQAISTMNGMLLNDRKVFVGH 157
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + +M +G SKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 304 VITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 350
>gi|385808623|ref|YP_005845019.1| RRM domain-containing protein [Ignavibacterium album JCM 16511]
gi|383800671|gb|AFH47751.1| RRM domain protein [Ignavibacterium album JCM 16511]
Length = 83
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+A ++ DK RSKG+G+V F TE EA A+ +NG + GR I V +P
Sbjct: 31 SAKVVTDKQTRRSKGFGFVEFETEAEASAAINALNGSEVKGRNIIVSEAKP 81
>gi|449550007|gb|EMD40972.1| hypothetical protein CERSUDRAFT_111545 [Ceriporiopsis subvermispora
B]
Length = 286
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 33/45 (73%)
Query: 43 TIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
TI+ D+ +RS+G+G++T ST EEA + + ++NG L+GR I VD
Sbjct: 109 TIVYDQRSDRSRGFGFITMSTTEEAGRCIKELNGVELNGRRIRVD 153
>gi|302038618|ref|YP_003798940.1| putative RNA-binding protein RbpA [Candidatus Nitrospira
defluvii]
gi|300606682|emb|CBK43015.1| putative RNA-binding protein RbpA [Candidatus Nitrospira
defluvii]
Length = 108
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 6/66 (9%)
Query: 26 LFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIF 85
LF +H + S A II DK +S+G+G+V ++ +EAQKA++ +NG + GR +
Sbjct: 22 LFAVHGAVES------ARIITDKFTGQSRGFGFVEMASSDEAQKAISALNGTDMGGRTLT 75
Query: 86 VDNVRP 91
V+ RP
Sbjct: 76 VNEARP 81
>gi|349803919|gb|AEQ17432.1| putative poly binding cytoplasmic 1 [Hymenochirus curtipes]
Length = 590
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
+M +SKG+G+V+F E+AQKA+ DMNGK ++G+ I+V + R
Sbjct: 222 VMTDDSGKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYVGRAKKVER 271
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV 170
>gi|403414037|emb|CCM00737.1| predicted protein [Fibroporia radiculosa]
Length = 146
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 7/92 (7%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L AFSQFG VT+ V K P LH F+ + ++ D+ RS+G+G+VTF
Sbjct: 19 LHQAFSQFGTVTD--VRDPVKGSPP-SLHN--DGSRFVVHSIVMKDRETGRSRGFGFVTF 73
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD--NVRP 91
++ +EA A+ ++ + LDGR + V+ N RP
Sbjct: 74 NSVDEANAAINGLHEQDLDGRRLKVNMANARP 105
>gi|297283068|ref|XP_001113342.2| PREDICTED: polyadenylate-binding protein 4 [Macaca mulatta]
Length = 657
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 39 LFAATI---IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRY 95
LF+ T+ +M +SKG+G+V++ E+A KA+ +MNGK + G++IFV R ++
Sbjct: 210 LFSKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG--RAQKKV 267
Query: 96 NTDAPLARQSAQSPEE 111
A L R+ Q +E
Sbjct: 268 ERQAELKRKFEQLKQE 283
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 317 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 362
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|196234692|ref|ZP_03133505.1| RNP-1 like RNA-binding protein [Chthoniobacter flavus Ellin428]
gi|196221240|gb|EDY15797.1| RNP-1 like RNA-binding protein [Chthoniobacter flavus Ellin428]
Length = 126
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 5/63 (7%)
Query: 34 ISDSFLFAATI-----IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 88
+ D+F A T+ + DK RS+G+ +VT +T +EAQKA++ +GK L GR + V+
Sbjct: 19 LQDAFAEAGTVQEVALMQDKFTGRSRGFAFVTMATPDEAQKAISIFHGKTLQGRPLTVNE 78
Query: 89 VRP 91
RP
Sbjct: 79 ARP 81
>gi|359475330|ref|XP_003631658.1| PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Vitis
vinifera]
Length = 162
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 27/86 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L AFSQFG++ E + II D+ RS+G+G+VTF
Sbjct: 24 LERAFSQFGEILE---------------------------SKIINDRETGRSRGFGFVTF 56
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD 87
S+E+ + A+ MNG+ LDGR I V+
Sbjct: 57 SSEQSMRDAIEGMNGQNLDGRNITVN 82
>gi|356538787|ref|XP_003537882.1| PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Glycine
max]
Length = 170
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSR 93
+ + +I D+ RS+G+G+VTF++E+ + A+A MNG+ LDGR I V+ R SR
Sbjct: 34 IVESKVINDRETGRSRGFGFVTFASEQSMKDAIAGMNGQDLDGRNITVNEAQTRASR 90
>gi|295414050|gb|ADG08184.1| cytoplasmic poly(A) binding protein, partial [Schmidtea
mediterranea]
Length = 491
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M NRSKG+G+V FS EEA KA+ +MNGK+ + ++V R+ + A LA Q
Sbjct: 129 VMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYV--ALAQRKEDRKAHLASQ 186
Query: 105 SAQ--SPEEN 112
Q +P N
Sbjct: 187 YMQRVNPHRN 196
Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A +++D+ +SKG+G+V F E A+ A+ +NGK+ R ++V
Sbjct: 20 ITSAKVMIDE-NGKSKGFGFVCFKDSETAESAVKALNGKMFKDRQLYV 66
>gi|121583148|ref|YP_973589.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans
CJ2]
gi|120596410|gb|ABM39847.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans
CJ2]
Length = 148
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 35/53 (66%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ +A ++M++ RSKG+G+V + + +AQ A+ MNG+ L GR I V+ RP
Sbjct: 29 VTSAKVMMERDTGRSKGFGFVEMANDAQAQAAINGMNGQPLGGRSITVNEARP 81
>gi|326515712|dbj|BAK07102.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 104
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
II D+ RS+G+G+VTF+++E ++A+ MNG+ LDGR I V+ + R
Sbjct: 37 IITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSRR 86
>gi|121583453|ref|YP_973884.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans
CJ2]
gi|120596707|gb|ABM40142.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans
CJ2]
Length = 150
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 35/53 (66%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ +A ++M++ RSKG+G+V + + +AQ A+ MNG+ L GR I V+ RP
Sbjct: 29 VTSAKVMMERDTGRSKGFGFVEMANDAQAQAAINGMNGQPLGGRSITVNEARP 81
>gi|407039226|gb|EKE39520.1| RNA recognition motif domain containing protein [Entamoeba
nuttalli P19]
Length = 320
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 31/45 (68%)
Query: 43 TIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+IM++ SKG+GYV F TEE AQKAL + N ++L GR I VD
Sbjct: 32 VVIMERYDGASKGFGYVEFDTEESAQKALREGNNEMLRGRNIRVD 76
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
A+++ D+ N+SKGYG+V F + A+ N L+DGR I V
Sbjct: 261 ASVVYDRDTNKSKGYGFVVFDNSVDQHTAIEQFNNYLVDGRKIMV 305
>gi|351723119|ref|NP_001235732.1| uncharacterized protein LOC100526902 [Glycine max]
gi|255631115|gb|ACU15923.1| unknown [Glycine max]
Length = 176
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
L A +++DK RS+G+G+VTF ++ +A+ MNG LDGR I VD +P
Sbjct: 33 LIEAKVVVDKFSGRSRGFGFVTFDDKKAMDEAIDAMNGMDLDGRTITVDRAQP 85
>gi|115384864|ref|XP_001208979.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114196671|gb|EAU38371.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 157
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 33/46 (71%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
A ++ D+ RS+G+G+VTF++ +EA AL ++N + DGR+I VD
Sbjct: 58 AIVVKDRDTGRSRGFGFVTFTSPQEADAALNELNNQEFDGRIIRVD 103
>gi|356508388|ref|XP_003522939.1| PREDICTED: uncharacterized protein LOC100806292 [Glycine max]
Length = 185
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 5/62 (8%)
Query: 30 HYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89
HY I +S +I+D+ RS+G+G+VTF++E+ + A+ MNG+ LDGR I V+
Sbjct: 30 HYGEIVES-----KVIIDRETGRSRGFGFVTFASEQAMKDAIEGMNGQNLDGRSITVNEA 84
Query: 90 RP 91
+
Sbjct: 85 QS 86
>gi|332142478|ref|YP_004428216.1| hypothetical protein MADE_1015430 [Alteromonas macleodii str.
'Deep ecotype']
gi|410862690|ref|YP_006977924.1| hypothetical protein amad1_15375 [Alteromonas macleodii AltDE1]
gi|327552500|gb|AEA99218.1| hypothetical protein MADE_1015430 [Alteromonas macleodii str.
'Deep ecotype']
gi|410819952|gb|AFV86569.1| hypothetical protein amad1_15375 [Alteromonas macleodii AltDE1]
Length = 117
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 33/48 (68%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++MD+ N SKG+G+V ST+EE KA+ +N K++DG+ I V
Sbjct: 27 IASCDLVMDEATNLSKGFGFVEMSTQEETDKAIEKLNAKVIDGKKIRV 74
>gi|225683698|gb|EEH21982.1| nucleolar protein [Paracoccidioides brasiliensis Pb03]
Length = 730
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 13/83 (15%)
Query: 12 VTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKAL 71
TE L ++ +S +PL + AT+++D +SKGYG+VTF+ E+ +AL
Sbjct: 60 TTESLTDYFSQS---YPLKH----------ATVVLDPQTKQSKGYGFVTFADSEDVARAL 106
Query: 72 ADMNGKLLDGRVIFVDNVRPSRR 94
+ NG + DG+ + ++ P R
Sbjct: 107 EEFNGSVFDGKKLKIEVAEPRHR 129
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 28 PLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
P ++ SF ++ K N+ G+G+V + A+KAL +NGK +DGR + VD
Sbjct: 172 PEQLEVLFRSFGKVKHAVIPKKGNKHSGFGFVVLRGRKNAEKALEAVNGKEVDGRTLAVD 231
>gi|226509825|ref|NP_001150518.1| ELAV-like protein 4 [Zea mays]
gi|195639828|gb|ACG39382.1| ELAV-like protein 4 [Zea mays]
gi|414590519|tpg|DAA41090.1| TPA: ELAV-like protein 4 [Zea mays]
Length = 129
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 29/105 (27%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L +AFS+FGQV E A +I D+ S+G+G+V +
Sbjct: 50 LKEAFSKFGQVIE---------------------------ARVITDRISGYSRGFGFVKY 82
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQSA 106
+T +EA +A+ M+GK LD VIF + P +N + L + A
Sbjct: 83 ATVQEAGEAIKGMDGKFLDSWVIFAET--PHNHHNKEHQLMIEVA 125
>gi|158516903|gb|ABW70168.1| putative glycine-rich RNA-binding protein 2 [Bambusa oldhamii]
Length = 162
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 29/93 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAF+ FG+V E A +I D+ +S+G+G+V+F
Sbjct: 53 LKDAFTSFGEVVE---------------------------ARVITDRDTGKSRGFGFVSF 85
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD--NVRPS 92
S ++A+ A++ M+G+ L+GR I V+ N RP+
Sbjct: 86 SNGDDAKNAMSSMDGQELEGRNIHVNFANERPA 118
>gi|334705246|ref|ZP_08521112.1| RNA-binding protein [Aeromonas caviae Ae398]
Length = 81
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLAR 103
II+D+ +SKG+G++ EA+KA+A+++G + GR I V+ +P TDAP R
Sbjct: 21 IIIDRDTGQSKGFGFIEMPVNGEAEKAIAELHGTEVGGRTITVNQAKP----KTDAPRGR 76
>gi|45198625|ref|NP_985654.1| AFR107Wp [Ashbya gossypii ATCC 10895]
gi|44984635|gb|AAS53478.1| AFR107Wp [Ashbya gossypii ATCC 10895]
gi|374108884|gb|AEY97790.1| FAFR107Wp [Ashbya gossypii FDAG1]
Length = 396
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ A +I ++G ++S+GYGYV F A+KA+ +M+GK +DGR I D
Sbjct: 193 VVGARVIYERGTDKSRGYGYVDFEDVSYAEKAVKEMHGKEIDGRAINCD 241
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 26 LFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIF 85
LF H +IS I N+ KG+GYV + + EEAQ AL + G+ +D R +
Sbjct: 287 LFSKHGNVIS------VRIPTHPESNQPKGFGYVQYGSVEEAQAALDALQGEYIDNRPVR 340
Query: 86 VD 87
+D
Sbjct: 341 ID 342
>gi|41054151|ref|NP_956133.1| polyadenylate-binding protein 1-like [Danio rerio]
gi|27881953|gb|AAH44513.1| Zgc:55855 [Danio rerio]
gi|182890236|gb|AAI65470.1| Zgc:55855 protein [Danio rerio]
Length = 620
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPL 101
+ +M + RS+G+G+V F +A++A+ +MNGK L+GRV++V R +R L
Sbjct: 219 SVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVG--RAQKRLERQGEL 276
Query: 102 ARQSAQSPEE 111
R+ Q +E
Sbjct: 277 KRKFEQIKQE 286
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 88
+ + ++ D+ N SKGYG+V F T+E A +A+ MNG LL+ R +FV +
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGH 172
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++ D G S+G+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMTDGG--HSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
>gi|6754972|ref|NP_035163.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
gi|473092|emb|CAA53572.1| polyA binding protein, testis-enriched isoform [Mus musculus]
gi|29835142|gb|AAH51134.1| Poly(A) binding protein, cytoplasmic 2 [Mus musculus]
gi|148678113|gb|EDL10060.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
Length = 628
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+G +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 217 ILSVKVMTDEG-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 263
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKG+G+V F TEE A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVSDE--NGSKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Query: 40 FAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+T +M +G RSKG+G+V FS+ EEA KA+++MNG+++ + ++V
Sbjct: 320 ITSTKVMTEG-GRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYV 365
>gi|15228102|ref|NP_181259.1| ribonucleoprotein [Arabidopsis thaliana]
gi|12230623|sp|Q9ZUU4.1|ROC1_ARATH RecName: Full=Ribonucleoprotein At2g37220, chloroplastic; Flags:
Precursor
gi|13877809|gb|AAK43982.1|AF370167_1 putative RNA-binding protein [Arabidopsis thaliana]
gi|4056477|gb|AAC98043.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|15081717|gb|AAK82513.1| At2g37220/F3G5.1 [Arabidopsis thaliana]
gi|16323482|gb|AAL15235.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|20197716|gb|AAM15222.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|330254275|gb|AEC09369.1| ribonucleoprotein [Arabidopsis thaliana]
Length = 289
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSRR 94
A +I D+ RSKG+G+VT+ + +E Q A+ ++G LDGR I V RP RR
Sbjct: 233 ARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRR 287
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+I DK RS+G+G+VT S+ E + A NG LDGR + V+ P
Sbjct: 122 VIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPP 169
>gi|2393873|gb|AAB70164.1| poly(A)-binding protein testis-specific isoform [Mus musculus]
Length = 603
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+G +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 192 ILSVKVMTDEG-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 238
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKG+G+V F TEE A++A+ MNG LL+ R +FV
Sbjct: 100 ILSCKVVSDE--NGSKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFV 145
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Query: 40 FAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+T +M +G RSKG+G+V FS+ EEA KA+++MNG+++ + ++V
Sbjct: 295 ITSTKVMTEG-GRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYV 340
>gi|412986787|emb|CCO15213.1| predicted protein [Bathycoccus prasinos]
Length = 260
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 34/44 (77%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+I D+ RS+G+G+VT S+E+EA+ +A +NG+ +DGRV+ V+
Sbjct: 202 LITDRETGRSRGFGFVTMSSEKEAEDVVAQLNGQDVDGRVLRVN 245
>gi|291514454|emb|CBK63664.1| RNA-binding proteins (RRM domain) [Alistipes shahii WAL 8301]
Length = 116
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+A +I D+ RS+G+G+V EEE QKA+ +NG +G+ I V+ RP
Sbjct: 29 SANVITDRETGRSRGFGFVEMPNEEEGQKAIDQLNGTSFEGQTITVNVARP 79
>gi|302657509|ref|XP_003020475.1| hypothetical protein TRV_05442 [Trichophyton verrucosum HKI 0517]
gi|291184312|gb|EFE39857.1| hypothetical protein TRV_05442 [Trichophyton verrucosum HKI 0517]
Length = 793
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 13/83 (15%)
Query: 12 VTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKAL 71
TE L ++ +S +PL + AT+++D +SKGYG+VTF+ E+AQ A
Sbjct: 97 TTESLTEYFSQS---YPLKH----------ATVVLDPQTKQSKGYGFVTFTDHEDAQSAA 143
Query: 72 ADMNGKLLDGRVIFVDNVRPSRR 94
++N + +G+ I ++ P R
Sbjct: 144 RELNNSVFEGKKIKIELAEPRHR 166
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 28 PLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
P H L+ S+ ++ K +R G+G+V + A++A+ +NGK +DGR + VD
Sbjct: 212 PQHLELLFRSYGKIKHAVVPKKGSRLAGFGFVVMRGRKNAERAIEGVNGKEVDGRTLAVD 271
>gi|226293059|gb|EEH48479.1| nucleolar protein [Paracoccidioides brasiliensis Pb18]
Length = 691
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 13/83 (15%)
Query: 12 VTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKAL 71
TE L ++ +S +PL + AT+++D +SKGYG+VTF+ E+ +AL
Sbjct: 60 TTESLTDYFSQS---YPLKH----------ATVVLDPQTKQSKGYGFVTFADSEDVARAL 106
Query: 72 ADMNGKLLDGRVIFVDNVRPSRR 94
+ NG + DG+ + ++ P R
Sbjct: 107 EEFNGSVFDGKKLKIEVAEPRHR 129
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+I KG N+ G+G+V + A+KAL +NGK +DGR + VD
Sbjct: 189 VIPKKG-NKHSGFGFVVLRGRKNAEKALEAVNGKEVDGRTLAVD 231
>gi|46139099|ref|XP_391240.1| hypothetical protein FG11064.1 [Gibberella zeae PH-1]
Length = 127
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 29/93 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L FS+FG+VT+ + I+ D+ R++G+G+VTF
Sbjct: 18 LRQTFSEFGEVTDSI---------------------------IMRDRDTGRARGFGFVTF 50
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD--NVRPS 92
STEE+A A+ +N + LDGR I V+ N RP+
Sbjct: 51 STEEQATAAVDALNEQELDGRRIRVNVANARPA 83
>gi|37681851|gb|AAQ97803.1| poly(A)-binding protein, cytoplasmic 1 [Danio rerio]
Length = 620
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPL 101
+ +M + RS+G+G+V F +A++A+ +MNGK L+GRV++V R +R L
Sbjct: 219 SVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVG--RAQKRLERQGEL 276
Query: 102 ARQSAQSPEE 111
R+ Q +E
Sbjct: 277 KRKFEQIKQE 286
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 88
+ + ++ D+ N SKGYG+V F T+E A +A+ MNG LL+ R +FV +
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGH 172
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++ D G S+G+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMTDGG--HSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
>gi|75319742|sp|Q43472.1|GRP_HORVU RecName: Full=Glycine-rich RNA-binding protein blt801; AltName:
Full=Low temperature-responsive RNA-binding protein
gi|1229138|gb|AAB07749.1| low temperature-responsive RNA-binding protein [Hordeum vulgare
subsp. vulgare]
Length = 161
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 37/55 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
+ + II D+ RS+G+G+VTF+++E ++A+ MNG+ LDGR I V+ + R
Sbjct: 32 VIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSRR 86
>gi|194862772|ref|XP_001970115.1| GG10454 [Drosophila erecta]
gi|190661982|gb|EDV59174.1| GG10454 [Drosophila erecta]
Length = 593
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDA 99
A +IMD RSKGYG++T+ ++A+KAL +NG L GR++ V NV NT +
Sbjct: 362 AIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMKVGNVTERLDMNTTS 420
>gi|21617920|gb|AAM66970.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 289
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSRR 94
A +I D+ RSKG+G+VT+ + +E Q A+ ++G LDGR I V RP RR
Sbjct: 233 ARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRR 287
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+I DK RS+G+G+VT S+ E + A NG LDGR + V+ P
Sbjct: 122 VIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPP 169
>gi|357144628|ref|XP_003573359.1| PREDICTED: nucleolin-like [Brachypodium distachyon]
Length = 153
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
A ++ D+ SKG+G+V +++ E+A K + M+GK LDG VIF + RP
Sbjct: 77 ARVVTDRVTGFSKGFGFVRYASVEDASKGIEGMDGKFLDGWVIFAEYARP 126
>gi|165940926|gb|ABY75308.1| cytoplasmic 1 polyA binding protein [Ovis aries]
Length = 305
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 49 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 94
>gi|112994|sp|P10979.1|GRPA_MAIZE RecName: Full=Glycine-rich RNA-binding, abscisic acid-inducible
protein
gi|22313|emb|CAA31077.1| ABA-inducible gene protein [Zea mays]
gi|195605904|gb|ACG24782.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195617536|gb|ACG30598.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195620254|gb|ACG31957.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195637320|gb|ACG38128.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|226091|prf||1410284A abscisic acid inducible gene
Length = 157
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ + +I D+ RS+G+G+VTFS+E A+ +MNGK LDGR I V+ +
Sbjct: 34 ILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQS 86
>gi|413933457|gb|AFW68008.1| responsive to abscisic acid15 [Zea mays]
Length = 159
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ + +I D+ RS+G+G+VTFS+E A+ +MNGK LDGR I V+ +
Sbjct: 34 ILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQS 86
>gi|388508864|gb|AFK42498.1| unknown [Medicago truncatula]
Length = 300
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 35/50 (70%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
A +I ++ +RS+G+G+VT ST EE ++A+ +G LDGR++ V+N P
Sbjct: 151 AEVIYNRDTDRSRGFGFVTMSTSEEVERAVNKFSGFELDGRLLTVNNAAP 200
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSRRY 95
+A ++ D+ R +G+G+VT S E E A+A ++G+ +GR I V+ RP R +
Sbjct: 244 SAQVVYDRETGRLRGFGFVTMSNEAEMNDAIAALDGQSFNGRAIRVNVAEERPRRSF 300
>gi|354476610|ref|XP_003500517.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 637
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
+ + ++ D+ N SKGYG+V F T+EEA++A+ MNG L+ R +FV + SRR
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFK-SRR 177
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A + M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 330 ITSAKVTMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 375
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+A+KA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYV 263
>gi|300113043|ref|YP_003759618.1| RNP-1 like RNA-binding protein [Nitrosococcus watsonii C-113]
gi|299538980|gb|ADJ27297.1| RNP-1 like RNA-binding protein [Nitrosococcus watsonii C-113]
Length = 118
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNT 97
+A +I+DK NRSKG+G+V +++E+A+ A+ +M+ + GR I V+ RP N
Sbjct: 46 SAKVIVDKFSNRSKGFGFVEMASKEDAETAIKEMHDSDIKGRQIVVNEARPRNESNN 102
>gi|226491203|ref|NP_001151562.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195647746|gb|ACG43341.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 156
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ + +I D+ RS+G+G+VTFS+E A+ +MNGK LDGR I V+ +
Sbjct: 34 ILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQS 86
>gi|195645042|gb|ACG41989.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 142
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ + +I D+ RS+G+G+VTFS+E A+ +MNGK LDGR I V+ +
Sbjct: 34 ILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQS 86
>gi|194700358|gb|ACF84263.1| unknown [Zea mays]
gi|413933458|gb|AFW68009.1| responsive to abscisic acid15 [Zea mays]
Length = 140
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ + +I D+ RS+G+G+VTFS+E A+ +MNGK LDGR I V+ +
Sbjct: 34 ILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQS 86
>gi|165875543|gb|ABY68599.1| poly(A) binding protein cytoplasmic 1 [Ovis aries]
Length = 289
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 37 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 82
>gi|406873754|gb|EKD23843.1| hypothetical protein ACD_81C00167G0002 [uncultured bacterium]
Length = 111
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 36/51 (70%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+A II+DK RSKG+G+V ++++EA+KA+ NGK +GR + V+ RP
Sbjct: 31 SAMIIIDKMTGRSKGFGFVEMASDDEAEKAIDMFNGKDFEGRSLTVNVARP 81
>gi|402590718|gb|EJW84648.1| polyadenylate-binding protein 4, partial [Wuchereria bancrofti]
Length = 519
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
SKGYG+V F TEE AQKA+ +NG LL+G+ ++V +P
Sbjct: 9 SKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQP 47
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
+ +A ++ D RSKG+G+V F +EA KA+ +MNGK++ + ++V R+ +
Sbjct: 194 ITSAKVMCDD-NGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYV--ALAQRKEDRK 250
Query: 99 APLARQSAQ 107
A LA Q Q
Sbjct: 251 AQLASQYMQ 259
>gi|212722916|ref|NP_001132731.1| uncharacterized protein LOC100194217 [Zea mays]
gi|194695242|gb|ACF81705.1| unknown [Zea mays]
gi|413933459|gb|AFW68010.1| responsive to abscisic acid15 [Zea mays]
Length = 96
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ + +I D+ RS+G+G+VTFS+E A+ +MNGK LDGR I V+
Sbjct: 34 ILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVN 82
>gi|374385669|ref|ZP_09643172.1| hypothetical protein HMPREF9449_01558 [Odoribacter laneus YIT
12061]
gi|373225371|gb|EHP47705.1| hypothetical protein HMPREF9449_01558 [Odoribacter laneus YIT
12061]
Length = 100
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 29 LHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 88
LH + +A +I D+ RS+G+G+V ++E QKA++++N DGR+I V
Sbjct: 17 LHELFNEYGEISSAKVITDRESGRSRGFGFVEMKNDDEGQKAISELNEAEYDGRIISVAV 76
Query: 89 VRPSRRYNTDAPLARQSAQS 108
RP + + R S S
Sbjct: 77 ARPRTERSNNGSYNRNSYNS 96
>gi|297812083|ref|XP_002873925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319762|gb|EFH50184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 167
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 44/95 (46%), Gaps = 29/95 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L FS+FGQVT II+++ +S GYGYV F
Sbjct: 91 LKKVFSEFGQVTN---------------------------VKIIINERTRQSLGYGYVWF 123
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP--SRR 94
+ +E+AQ A+ MNGK DGR I V +P SRR
Sbjct: 124 NRKEDAQLAVEAMNGKFFDGRFILVKFGQPGLSRR 158
>gi|293332827|ref|NP_001169335.1| uncharacterized protein LOC100383202 [Zea mays]
gi|224028769|gb|ACN33460.1| unknown [Zea mays]
gi|413918115|gb|AFW58047.1| hypothetical protein ZEAMMB73_457780 [Zea mays]
Length = 714
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ A +I D+ +SKGYG+V +S EA A+A MNG L+GRVI V
Sbjct: 446 IVMAKVIKDRNTGQSKGYGFVKYSDVSEANAAIAAMNGHHLEGRVIAV 493
>gi|115520925|gb|ABJ08845.1| putative polyadenylate-binding protein 1 [Squalus acanthias]
Length = 212
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 33/47 (70%)
Query: 40 FAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
F + +M RSKG+G+V+F E+AQKA+ +MNGK ++GR ++V
Sbjct: 149 FLSVKVMTDDSGRSKGFGFVSFEKHEDAQKAVDEMNGKEINGRQVYV 195
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
+ + ++ D+ N SKGYG+V F T E A++A+ MNG LL+ R +FV R R +
Sbjct: 57 ILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVG--RFKSRKERE 112
Query: 99 APLARQSAQ 107
A L ++ +
Sbjct: 113 AELGAKAKE 121
>gi|293336981|ref|NP_001169115.1| uncharacterized protein LOC100382959 [Zea mays]
gi|223975005|gb|ACN31690.1| unknown [Zea mays]
gi|414887554|tpg|DAA63568.1| TPA: hypothetical protein ZEAMMB73_633512 [Zea mays]
Length = 103
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 34/46 (73%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
A ++ D R KG+G+V +S++ EA+KA+ M+GK+L GR+IFV+
Sbjct: 50 ARLMRDHQTGRMKGFGFVKYSSQAEAEKAVKAMDGKILRGRLIFVE 95
>gi|255930353|ref|XP_002556736.1| Pc06g01290 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581349|emb|CAP79122.1| Pc06g01290 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 140
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
AT++ D+ RS+G+G+V FST++EA A+ MN + DGR I VD
Sbjct: 31 ATVVKDRDTGRSRGFGFVRFSTDDEATAAMNAMNNQEFDGRQIRVD 76
>gi|168699727|ref|ZP_02732004.1| putative RNA-binding protein [Gemmata obscuriglobus UQM 2246]
Length = 113
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 36/53 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ A I+MD+ RS+G+G+V + E+EAQ A+ +N +L++GR + V+ +P
Sbjct: 8 VIRAQIVMDRETGRSRGFGFVEMANEQEAQAAIDALNNQLMNGRPLTVNIAKP 60
>gi|242045928|ref|XP_002460835.1| hypothetical protein SORBIDRAFT_02g035890 [Sorghum bicolor]
gi|241924212|gb|EER97356.1| hypothetical protein SORBIDRAFT_02g035890 [Sorghum bicolor]
Length = 131
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 27/86 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L +AFS+FGQV E A +I D+ S+G+G+V +
Sbjct: 52 LKEAFSKFGQVIE---------------------------ARVITDRISGYSRGFGFVKY 84
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD 87
+T +EA +A+ M+GK LDG VIF +
Sbjct: 85 ATVQEAGEAIKGMDGKFLDGWVIFAE 110
>gi|162455692|ref|YP_001618059.1| RNA recognition motif-containing protein [Sorangium cellulosum So
ce56]
gi|161166274|emb|CAN97579.1| RNA-binding region RNP-1 (RNA recognition motif) [Sorangium
cellulosum So ce56]
Length = 139
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 33/44 (75%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
I+ D+ +S+G+G+VT T E+AQ+A+ +MNG ++DGR + V+
Sbjct: 34 IVTDRESGQSRGFGFVTMGTPEQAQQAIENMNGAMMDGRPLRVN 77
>gi|120610816|ref|YP_970494.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
gi|120589280|gb|ABM32720.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
Length = 116
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ ++ I+ D+ RSKG+G+V S+ E+AQ A+ +NG +DGR I V+ RP
Sbjct: 29 VTSSKIMTDRETGRSKGFGFVEMSSAEDAQSAITGLNGLSVDGRSIVVNLARP 81
>gi|353235522|emb|CCA67534.1| related to glycine-rich RNA-binding protein [Piriformospora
indica DSM 11827]
Length = 236
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 36/52 (69%), Gaps = 2/52 (3%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRP 91
+ ++ D+ RS+G+G+VT+S+EEEA A++ +N LDGR I V+ N RP
Sbjct: 32 SIVMRDRETGRSRGFGFVTYSSEEEASNAISGLNETSLDGRQIKVNLANARP 83
>gi|327285428|ref|XP_003227435.1| PREDICTED: polyadenylate-binding protein 4-like [Anolis
carolinensis]
Length = 616
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V+F EEA KA+ +MNGK ++G+++FV R ++ A L R+
Sbjct: 209 VMTDPTGKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMVFVG--RAQKKVERQAELKRR 266
Query: 105 SAQSPEE 111
Q +E
Sbjct: 267 FEQLKQE 273
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 37/48 (77%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A +++++G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 307 ITSAKVMLEEG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 352
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T++ A +A+ MNG LL+ R +FV
Sbjct: 112 ILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 157
>gi|359807285|ref|NP_001240860.1| uncharacterized protein LOC100815224 [Glycine max]
gi|255645181|gb|ACU23088.1| unknown [Glycine max]
Length = 208
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
L A +++DK RS+G+G+VTF ++ +A+ MNG LDGR I VD +P
Sbjct: 33 LIEAKVVVDKFSGRSRGFGFVTFDDKKAMDEAIDAMNGIDLDGRTITVDRAQP 85
>gi|1778374|gb|AAB71417.1| glycine-rich RNA-binding protein PsGRBP [Pisum sativum]
gi|206586422|gb|ACI15745.1| glycine-rich RNA-binding protein [Pisum sativum]
Length = 146
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 29/93 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAF+ +G+V E A +I D+ RS+G+G+V F
Sbjct: 52 LKDAFASYGEVVE---------------------------ARVITDRDTGRSRGFGFVNF 84
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD--NVRPS 92
+++E A AL+ M+G+ L+GR I V N RPS
Sbjct: 85 TSDESATSALSAMDGQDLNGRNIRVSYANDRPS 117
>gi|374584597|ref|ZP_09657689.1| RNP-1 like RNA-binding protein [Leptonema illini DSM 21528]
gi|373873458|gb|EHQ05452.1| RNP-1 like RNA-binding protein [Leptonema illini DSM 21528]
Length = 109
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
A ++MD+ +S+G+G+VTF+ E A+ A++ MNG LDGR I V + R
Sbjct: 32 AIVVMDRYTGKSRGFGFVTFADENSARTAISAMNGTDLDGRSITVSEAQERSR 84
>gi|357143694|ref|XP_003573016.1| PREDICTED: uncharacterized protein LOC100843274 [Brachypodium
distachyon]
Length = 387
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
L IIMDK RSKGY ++ ++TE+ AL MNG++++G +I VD + + R
Sbjct: 314 LVEVKIIMDKISKRSKGYAFIEYTTEDAGGAALKAMNGEIINGWMIVVDVAKTNLR 369
>gi|344301362|gb|EGW31674.1| hypothetical protein SPAPADRAFT_62285 [Spathaspora passalidarum
NRRL Y-27907]
Length = 478
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVI 84
L A ++ D +RS+GYG+VTFS + +A+ AL MNG+ L+GR I
Sbjct: 189 LKQAHVMWDMQTSRSRGYGFVTFSNQSDAELALQTMNGEWLNGRAI 234
>gi|387913830|gb|AFK10524.1| cold inducible RNA binding protein isoform 3 [Callorhinchus
milii]
gi|392873312|gb|AFM85488.1| cold inducible RNA binding protein isoform 3 [Callorhinchus
milii]
gi|392873324|gb|AFM85494.1| cold inducible RNA binding protein isoform 3 [Callorhinchus
milii]
gi|392873420|gb|AFM85542.1| cold inducible RNA binding protein isoform 3 [Callorhinchus
milii]
gi|392873526|gb|AFM85595.1| cold inducible RNA binding protein isoform 3 [Callorhinchus
milii]
gi|392873598|gb|AFM85631.1| cold inducible RNA binding protein isoform 3 [Callorhinchus
milii]
gi|392877296|gb|AFM87480.1| cold inducible RNA binding protein isoform 3 [Callorhinchus
milii]
Length = 136
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 27/86 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L + FS++GQV+E II D+ S+G+G+VTF
Sbjct: 21 LEEVFSEYGQVSE---------------------------VRIIRDRDTGTSRGFGFVTF 53
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD 87
+ ++AQ AL MNG+ L+GR I VD
Sbjct: 54 ESPDDAQDALTSMNGRSLEGRQIRVD 79
>gi|357457429|ref|XP_003598995.1| 28 kDa ribonucleoprotein [Medicago truncatula]
gi|355488043|gb|AES69246.1| 28 kDa ribonucleoprotein [Medicago truncatula]
Length = 447
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 29/92 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L+DAFS++GQV + A IIMD+ RSKG+G+VT+
Sbjct: 60 LSDAFSKYGQVLD---------------------------ARIIMDRESGRSKGFGFVTY 92
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD--NVRP 91
+T EEA A+ ++G+ L GR + V+ N RP
Sbjct: 93 NTVEEASSAIQALDGQDLYGRRVGVNFANERP 124
>gi|357119387|ref|XP_003561423.1| PREDICTED: glycine-rich RNA-binding protein blt801-like
[Brachypodium distachyon]
Length = 161
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAFS FG++ + + II D+ RS+G+G+VTF
Sbjct: 22 LQDAFSSFGEIID---------------------------SKIINDRETGRSRGFGFVTF 54
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
++E+ + A+ MNGK LDGR I V+ +
Sbjct: 55 ASEQSMRDAIEGMNGKDLDGRNITVNEAQS 84
>gi|311698159|gb|ADQ00374.1| glycine-rich RNA-binding protein [Sequoia sempervirens]
Length = 194
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAFS FG+V E + I+ D+ RS+G+G+VTF
Sbjct: 24 LHDAFSPFGEVLE---------------------------SKIVSDRETGRSRGFGFVTF 56
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
S E+ A+ MNGK LDGR I V+ +
Sbjct: 57 SDEQAMMDAIEAMNGKELDGRNITVNQAQS 86
>gi|157818977|ref|NP_001099678.1| poly(A) binding protein, cytoplasmic 6 [Rattus norvegicus]
gi|149027506|gb|EDL83096.1| similar to RIKEN cDNA 4932702K14 (predicted) [Rattus norvegicus]
gi|197246058|gb|AAI68959.1| Poly(A) binding protein, cytoplasmic 3 [Rattus norvegicus]
Length = 643
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
+ + ++ D+ N SKGYG+V F T+EEA++A+ MNG L+ R +FV + SRR
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFK-SRR 177
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A + M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 330 ITSAKVTMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 375
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+A+KA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYV 263
>gi|356533254|ref|XP_003535181.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 275
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
+I DK RS+G+G+VT S+ EEA+ A NG LDGR + V++ P R N AP
Sbjct: 117 VIYDKTTGRSRGFGFVTMSSVEEAEAAAQQFNGYELDGRALRVNSGPPPAR-NESAP 172
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ A +I D+ RS+G+G+VTFS+ +E A+ +NG L+GR I V
Sbjct: 218 VLEARVIYDRESGRSRGFGFVTFSSPDEVNSAIQSLNGVDLNGRAIRV 265
>gi|145219698|ref|YP_001130407.1| RNP-1 like RNA-binding protein [Chlorobium phaeovibrioides DSM
265]
gi|145205862|gb|ABP36905.1| RNP-1 like RNA-binding protein [Chlorobium phaeovibrioides DSM
265]
Length = 90
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAFS+FGQV +A IIMDK RSKG+G+V
Sbjct: 17 LRDAFSEFGQVE---------------------------SANIIMDKFSGRSKGFGFVEM 49
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
S ++ A++A+ M+ K GR I V+ +P
Sbjct: 50 SDDDAAREAIEAMHNKDFMGRSIMVNEAKP 79
>gi|453089427|gb|EMF17467.1| RNA-binding domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 501
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--------NVR 90
L II D+ RSKG+GYV F+ E+A KAL N LLD R I VD N
Sbjct: 266 LAGVRIITDRDSGRSKGFGYVEFTNAEDAAKALEAKNESLLDNRNIRVDFSTPRDKSNAG 325
Query: 91 PSRRYN 96
P +R N
Sbjct: 326 PQQRSN 331
Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 12/80 (15%)
Query: 12 VTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKAL 71
TED+V YF H + S + D+ KG+GYV + EEAQ A
Sbjct: 357 ATEDVVREYFAE------HGNVNS------IRLPTDRDTGAPKGFGYVEMGSVEEAQAAF 404
Query: 72 ADMNGKLLDGRVIFVDNVRP 91
+ G+ + GR + +D +P
Sbjct: 405 NALQGQDVGGRPVRLDYAQP 424
>gi|431894424|gb|ELK04224.1| Polyadenylate-binding protein 1-like protein [Pteropus alecto]
Length = 512
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M S+G+G+V F EEAQKA+ DMNGK + GR+++V R +R L R+
Sbjct: 227 VMRDDSGHSRGFGFVNFEKHEEAQKAVMDMNGKEVRGRLLYVG--RAQKRMERQNELKRK 284
Query: 105 SAQ 107
Q
Sbjct: 285 FEQ 287
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + +M +G SKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 326 MITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 372
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 37 SFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 90
+ L + D G S+G+G+V F T E AQ A++ MNG LL+ R +FV + +
Sbjct: 124 NILSCKVVCDDHG---SRGFGFVHFETHEAAQLAISTMNGMLLNDRKVFVGHFK 174
>gi|356558254|ref|XP_003547422.1| PREDICTED: cold-inducible RNA-binding protein-like [Glycine max]
Length = 86
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
A + +D R KG+G+V+F +E EA+KAL MNG+++ GR+I V+
Sbjct: 36 ADLALDPITKRPKGFGFVSFKSEIEAEKALRAMNGRIVSGRLILVE 81
>gi|301624826|ref|XP_002941699.1| PREDICTED: polyadenylate-binding protein 4-like [Xenopus (Silurana)
tropicalis]
Length = 632
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V+F E+A KA+ DMNGK ++G+++FV R ++ A L R+
Sbjct: 228 VMTDPSGKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFVG--RAQKKVERQAELKRR 285
Query: 105 SAQSPEE 111
Q +E
Sbjct: 286 FEQLKQE 292
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 37/48 (77%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A +++++G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 326 ITSAKVMLEEG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 371
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
+ + ++ D+ N SKGY +V F T++ A +A+ MNG LL+ R +FV + R
Sbjct: 131 ILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRR 183
>gi|170058744|ref|XP_001865056.1| splicing factor [Culex quinquefasciatus]
gi|167877732|gb|EDS41115.1| splicing factor [Culex quinquefasciatus]
Length = 546
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 34/58 (58%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPL 101
+IMD RSKGYG++TF ++A+KAL +NG L GR + V NV T A L
Sbjct: 320 LIMDSDTGRSKGYGFITFHNADDAKKALEQLNGFELAGRPMKVGNVTERLDVTTHASL 377
>gi|147769692|emb|CAN65531.1| hypothetical protein VITISV_039630 [Vitis vinifera]
Length = 555
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M SKG+G+V FST EEAQKAL +NG LL GR +++
Sbjct: 340 VMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYI 381
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+IM G +S+G+G+V F + +EA+KA+ +NG +L + +FV
Sbjct: 234 GTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFV 279
>gi|260943806|ref|XP_002616201.1| hypothetical protein CLUG_03443 [Clavispora lusitaniae ATCC 42720]
gi|238849850|gb|EEQ39314.1| hypothetical protein CLUG_03443 [Clavispora lusitaniae ATCC 42720]
Length = 419
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 36/49 (73%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ +A +++++ +S+GYGYV FS++ A+KAL ++ GK +DGR + +D
Sbjct: 207 VISARVMIERSTGKSRGYGYVDFSSKAAAEKALNELQGKEIDGRPVNLD 255
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 7/45 (15%)
Query: 54 KGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD-------NVRP 91
KG+GYV FS+ EEAQ AL +NG+ LDGR +D N RP
Sbjct: 323 KGFGYVQFSSVEEAQNALNSLNGEYLDGRPCRLDFSTPRDNNARP 367
>gi|296827786|ref|XP_002851224.1| nucleolar protein 4 [Arthroderma otae CBS 113480]
gi|238838778|gb|EEQ28440.1| nucleolar protein 4 [Arthroderma otae CBS 113480]
Length = 734
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 13/83 (15%)
Query: 12 VTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKAL 71
TE L ++ +S +PL + AT+++D +SKGYG+VTF+ E+AQ A
Sbjct: 42 TTESLTEYFSQS---YPLKH----------ATVVLDPQTKQSKGYGFVTFTDHEDAQSAA 88
Query: 72 ADMNGKLLDGRVIFVDNVRPSRR 94
++N + +G+ I ++ P R
Sbjct: 89 KELNNSVFEGKKIKIEFAEPRHR 111
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 28 PLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
P H + S+ I+ + +R G+G+V + A++A+ +NGK +DGR + VD
Sbjct: 157 PEHLEQLFRSYGKIKHAIVPRKGSRVAGFGFVVMRGRKNAERAIEGVNGKEVDGRTLAVD 216
>gi|52346016|ref|NP_001005051.1| poly(A) binding protein, cytoplasmic 1 [Xenopus (Silurana)
tropicalis]
gi|49903495|gb|AAH76931.1| polyadenylate-binding protein 1 [Xenopus (Silurana) tropicalis]
Length = 634
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ DMNGK ++G+ I+V
Sbjct: 222 VMTDDNGKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYV 263
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV 170
>gi|148927167|ref|ZP_01810792.1| RNP-1 like RNA-binding protein [candidate division TM7 genomosp.
GTL1]
gi|147887382|gb|EDK72831.1| RNP-1 like RNA-binding protein [candidate division TM7 genomosp.
GTL1]
Length = 108
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
A ++ D+ RSKG+G+VT+ +E+A A+ +++ LDGR I V+ RP
Sbjct: 32 AKVVTDRDSGRSKGFGFVTYVNDEDADTAIKELDNSELDGRNIHVNEARP 81
>gi|426198367|gb|EKV48293.1| hypothetical protein AGABI2DRAFT_142473 [Agaricus bisporus var.
bisporus H97]
Length = 559
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ +AT+ +D+ RS+G+GYV FST + +KAL MNG +DGR I VD
Sbjct: 334 VSSATVQLDRNTGRSRGFGYVHFSTADAVEKAL-KMNGYEIDGRAIKVD 381
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 12 VTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKAL 71
+TED ++ YF + + + D+ + KG+GYV E+A+KA
Sbjct: 419 ITEDGLWSYFDGHSVKTIR-------------LPTDRETGQLKGFGYVELENVEDAKKAF 465
Query: 72 ADMNGKLLDGRVIFVDNVRP 91
++G+ ++GR + VD +P
Sbjct: 466 EAISGQEIEGRRVRVDYSQP 485
>gi|157817831|ref|NP_001099621.1| poly(A) binding protein, cytoplasmic 2 [Rattus norvegicus]
gi|149017412|gb|EDL76463.1| poly A binding protein, cytoplasmic 2 (predicted) [Rattus
norvegicus]
Length = 630
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+G +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 217 VLSVKVMTDEG-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 263
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKG+G+V F TEE A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Query: 40 FAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+T +M +G RSKG+G+V FS+ EEA KA+++MNG+++ + ++V
Sbjct: 320 ITSTKVMTEG-GRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYV 365
>gi|326484107|gb|EGE08117.1| ribosome biogenesis [Trichophyton equinum CBS 127.97]
Length = 750
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 13/82 (15%)
Query: 13 TEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALA 72
TE L ++ +S PL AT+++D +SKGYG+VTF+ E+AQ A
Sbjct: 60 TESLTEYFSQSYPLK-------------HATVVLDPQTKQSKGYGFVTFTDHEDAQSAAK 106
Query: 73 DMNGKLLDGRVIFVDNVRPSRR 94
++N + +G+ I ++ P R
Sbjct: 107 ELNNSVFEGKKIKIELAEPRHR 128
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 28 PLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
P H L+ S+ ++ K +R G+G+V + A++A+ +NGK +DGR + VD
Sbjct: 174 PQHLELLFRSYGKIKHAVVPKKGSRVAGFGFVVMRGRKNAERAIEGVNGKEVDGRTLAVD 233
>gi|448123237|ref|XP_004204643.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
gi|448125519|ref|XP_004205201.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
gi|358249834|emb|CCE72900.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
gi|358350182|emb|CCE73461.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
Length = 505
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ A +I +K +S+GYGYV F T+ +AQ AL + G+ +DGR I +D
Sbjct: 317 VTGARVIYEKASGKSRGYGYVDFETKSQAQHALKEYQGREIDGRPINLD 365
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 54 KGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQSAQSP 109
KG+GY+ FST +EA+ AL +NG+ ++GR +D P R N++ P R + P
Sbjct: 434 KGFGYIEFSTVDEAKAALEALNGEYVEGRPCRLDFSTP--RENSNRPSPRPQGRQP 487
>gi|348501352|ref|XP_003438234.1| PREDICTED: cold-inducible RNA-binding protein A-like [Oreochromis
niloticus]
Length = 183
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89
+I DK RS+G+G+V + E+A+ AL MNGK LDGR I VD
Sbjct: 36 VIRDKETGRSRGFGFVKYDNAEDAKDALDAMNGKTLDGRAIRVDEA 81
>gi|328715672|ref|XP_001946271.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 964
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
+A ++MD G RSKG+G+V FS+ EEA KA+ DMNG+++ + ++V R+ + A
Sbjct: 629 SAKVMMDDG--RSKGFGFVYFSSPEEATKAVTDMNGRIVGTKPLYV--TLAQRKKDRKAH 684
Query: 101 LARQSAQ 107
L Q +Q
Sbjct: 685 LDSQYSQ 691
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 29 LHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+H + + ++ D+ N SKGYG+V F T++ A +++ +NG LL+G+ +FV
Sbjct: 420 IHCYAHCLNLALVDSVAQDETGN-SKGYGFVHFETKQSATQSIEKVNGMLLNGKKVFV 476
>gi|302756609|ref|XP_002961728.1| hypothetical protein SELMODRAFT_140819 [Selaginella moellendorffii]
gi|300170387|gb|EFJ36988.1| hypothetical protein SELMODRAFT_140819 [Selaginella moellendorffii]
Length = 130
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPL 101
A +IMD+ RS+G+G+VTF + EA+ A+ M+G L GR I VD Y +D P
Sbjct: 39 ARVIMDRETGRSRGFGFVTFENDNEAKAAVQGMDGHELGGRSIRVD-------YASDRPS 91
Query: 102 A 102
A
Sbjct: 92 A 92
>gi|224140195|ref|XP_002323470.1| predicted protein [Populus trichocarpa]
gi|222868100|gb|EEF05231.1| predicted protein [Populus trichocarpa]
Length = 273
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSRRY 95
A ++ D+ RS+G+G+VT+S+ EE A+ +NG LDGR I V +P R++
Sbjct: 218 AKVVYDRDSGRSRGFGFVTYSSAEEVDNAIDSLNGAELDGRAIRVSVAEAKPRRQF 273
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+I DK RS+G+G+VT +T EE + A NG LDGR + V+
Sbjct: 121 VIYDKVTGRSRGFGFVTMTTIEEVEAASKQFNGYELDGRTLRVN 164
>gi|149391365|gb|ABR25700.1| chloroplast 28 kDa ribonucleoprotein [Oryza sativa Indica Group]
Length = 186
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSRR 94
A ++ D+ RS+G+G+VT +T+EE A+A ++G+ LDGR + V+ RP RR
Sbjct: 130 ARVVYDRETGRSRGFGFVTMATQEELDDAIAALDGQSLDGRALRVNVAEERPPRR 184
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 34/50 (68%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ +I ++ +RS+G+G+VT ST EEA+KA+ + +DGR++ V+ P
Sbjct: 36 SEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDVDGRLLTVNKAAP 85
>gi|388512901|gb|AFK44512.1| unknown [Medicago truncatula]
Length = 144
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
A ++ D+ SKG+G+V ++T E+A K + M+GK L+G VIF + RP
Sbjct: 80 ARVVTDRVSGYSKGFGFVKYATLEDAAKGIEGMDGKFLEGWVIFAEYARP 129
>gi|326469986|gb|EGD93995.1| ribosome biogenesis protein Nop4 [Trichophyton tonsurans CBS
112818]
Length = 739
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 13/82 (15%)
Query: 13 TEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALA 72
TE L ++ +S PL AT+++D +SKGYG+VTF+ E+AQ A
Sbjct: 43 TESLTEYFSQSYPLK-------------HATVVLDPQTKQSKGYGFVTFTDHEDAQSAAK 89
Query: 73 DMNGKLLDGRVIFVDNVRPSRR 94
++N + +G+ I ++ P R
Sbjct: 90 ELNNSVFEGKKIKIELAEPRHR 111
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 28 PLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
P H L+ S+ ++ K +R G+G+V + A++A+ +NGK +DGR + VD
Sbjct: 157 PQHLELLFRSYGKIKHAVVPKKGSRVAGFGFVVMRGRKNAERAIEGVNGKEVDGRTLAVD 216
>gi|126273923|ref|XP_001387749.1| nuclear localization sequence binding protein [Scheffersomyces
stipitis CBS 6054]
gi|126213619|gb|EAZ63726.1| nuclear localization sequence binding protein, partial
[Scheffersomyces stipitis CBS 6054]
Length = 245
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ +A +IM++ +S+GYGYV F ++ A+KAL + G+ LDGR I +D
Sbjct: 29 VISARVIMERATGKSRGYGYVDFDSKSAAEKALNEYQGRELDGRPINLD 77
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 26 LFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIF 85
+F +H +IS I + KG+GYV FS+ +EA+ A+ +NG+ ++GR
Sbjct: 124 IFGVHGTVIS------CRIPTHPDTQQPKGFGYVQFSSVDEAKAAMEALNGEYIEGRACR 177
Query: 86 VD 87
+D
Sbjct: 178 LD 179
>gi|1262583|dbj|BAA02244.1| polyadenylate binding protein II [Homo sapiens]
Length = 193
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G++IFV R ++ A L R+
Sbjct: 33 VMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG--RAQKKVERQAELKRK 90
Query: 105 SAQSPEE 111
Q +E
Sbjct: 91 FEQLKQE 97
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 131 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 176
>gi|432102707|gb|ELK30188.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 650
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 36/50 (72%), Gaps = 2/50 (4%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 90
+A +I+ G R KG+G+V+FS+ EEA+KA+ +M+GK+L R ++V R
Sbjct: 330 SAKVIVKGG--RRKGFGFVSFSSREEAKKAVEEMHGKMLSARPLYVSYAR 377
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV-RPSRR 94
+ + ++ D+ N KG+G+V F T E A KA+ +MNG L+ R +FV RP++R
Sbjct: 133 ILSCKVVSDE--NGPKGHGFVHFETREAADKAIKEMNGSLVKERKVFVGQFKRPNQR 187
Score = 41.2 bits (95), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 40 FAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 90
++ IM +SKG+G++ F +A++A+ ++NGK GR I+V +
Sbjct: 225 LSSVKIMTDDSGKSKGFGFIRFECHADAKRAIEEVNGKQFGGRKIYVSRAQ 275
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + + D +RS GYGYV F E+A AL MN +L G+ + +
Sbjct: 45 ILSVRVCRDALSSRSLGYGYVNFHRPEDAGHALNTMNFDVLHGKPVRI 92
>gi|409044525|gb|EKM54006.1| hypothetical protein PHACADRAFT_257571 [Phanerochaete carnosa
HHB-10118-sp]
Length = 155
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 27/86 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L AFSQFGQ+ + +V + D+ RS+G+G+VTF
Sbjct: 19 LRTAFSQFGQILDSIV---------------------------MRDRDTGRSRGFGFVTF 51
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD 87
S+ EAQ A+ +N + LDGR I V+
Sbjct: 52 SSANEAQTAITSLNEQELDGRRIRVN 77
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK ++G++IFV R ++ A L R+
Sbjct: 222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|344250008|gb|EGW06112.1| Putative RNA-binding protein 3 [Cricetulus griseus]
Length = 169
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
++ D+ RS+G+G++TF+ E A A+ MNG+ LDGR I VD+ S R
Sbjct: 37 VVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSAR 87
>gi|426228299|ref|XP_004008250.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 551
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 30 HYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
H ++ +++ I + KN SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 69 HARIVGQNWV-QKEIDLPNKKNGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 124
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 34/46 (73%), Gaps = 2/46 (4%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 198 AQKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 241
>gi|336371226|gb|EGN99565.1| hypothetical protein SERLA73DRAFT_159820 [Serpula lacrymans var.
lacrymans S7.3]
Length = 127
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 29/92 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L +AFS++GQV + +V + D+ RS+G+G+VTF
Sbjct: 19 LREAFSEYGQVVDSIV---------------------------MRDRETGRSRGFGFVTF 51
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD--NVRP 91
S+E+EA+ A+ ++ + LDGR I V+ N RP
Sbjct: 52 SSEQEAEAAINSLHEQDLDGRRIKVNLANARP 83
>gi|449446638|ref|XP_004141078.1| PREDICTED: nucleolysin TIAR-like [Cucumis sativus]
Length = 420
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 10/64 (15%)
Query: 34 ISDSFLFA----------ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRV 83
++D+ LFA A ++ D+ RS+GYG+V F E++AQ A+ D+NGK L R
Sbjct: 142 VTDATLFACFSVYPSCSDARVMWDQKTGRSRGYGFVAFRNEQDAQSAINDINGKWLGSRQ 201
Query: 84 IFVD 87
I +
Sbjct: 202 IRCN 205
>gi|449515273|ref|XP_004164674.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 288
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 40 FAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGR 82
AA ++ D RS GYG+V+F+T EEAQ AL+ + GK L GR
Sbjct: 217 IAARVVFDSPAGRSAGYGFVSFATREEAQTALSSLEGKELMGR 259
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
I+ + RS+G+ +VT ++ +EAQ A+ + + + GRVI V+
Sbjct: 125 IIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVE 167
>gi|406994267|gb|EKE13283.1| hypothetical protein ACD_13C00045G0007 [uncultured bacterium]
Length = 134
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%)
Query: 29 LHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 88
L + +AT+IMDK +SKG+G+V T EEA KA++ +N GR + V
Sbjct: 19 LKTLFSESGTVVSATVIMDKMTGQSKGFGFVEMETTEEAAKAISSLNETEFGGRTLIVAE 78
Query: 89 VRPSRRYNTDAPLARQSAQSP 109
+P A +S P
Sbjct: 79 AKPMEERRDRADFGGRSYGGP 99
>gi|346321757|gb|EGX91356.1| nucleolin protein Nsr1, putative [Cordyceps militaris CM01]
Length = 438
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 37 SFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSRR 94
S L A ++ DK RS+G+GYV F+ E A KA M G+ +DGR + +D N +P+
Sbjct: 205 SGLVHARVVTDKNTGRSRGFGYVDFADSESATKAYEAMQGQEVDGRALNLDYANAKPAES 264
Query: 95 YNTDAPLARQS 105
D R S
Sbjct: 265 KPQDRAADRAS 275
>gi|118488717|gb|ABK96169.1| unknown [Populus trichocarpa]
Length = 241
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSRRY 95
+ A IIMD+ RS+G+G+VT+++ EEA A+ M+G+ L GR + V+ RP R +
Sbjct: 66 VVEARIIMDRDTGRSRGFGFVTYTSSEEASSAIQAMDGQDLHGRRVRVNYATERPQRTF 124
>gi|41053728|ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|37590406|gb|AAH59662.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|39645430|gb|AAH63948.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
Length = 634
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++MD G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMDGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 32/42 (76%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +S+G+G+V+F E+AQ+A+ +MNGK ++G++I+V
Sbjct: 222 VMTDENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYV 263
>gi|449462067|ref|XP_004148763.1| PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic-like [Cucumis
sativus]
Length = 282
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 40 FAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGR 82
AA ++ D RS GYG+V+F+T EEAQ AL+ + GK L GR
Sbjct: 211 IAARVVFDSPAGRSAGYGFVSFATREEAQTALSSLEGKELMGR 253
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
I+ + RS+G+ +VT ++ +EAQ A+ + + + GRVI V+
Sbjct: 119 IIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVE 161
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK ++G++IFV R ++ A L R+
Sbjct: 222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|1395193|dbj|BAA12064.1| RNA-binding protein RZ-1 [Nicotiana sylvestris]
gi|1435062|dbj|BAA06012.1| RNA binding protein RZ-1 [Nicotiana sylvestris]
Length = 209
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
L A +++DK RS+G+G+VTF + + A+ MNG LDGR I VD +P +
Sbjct: 32 LVDAKVVLDKFSGRSRGFGFVTFDEKRAMEDAIEAMNGVDLDGRDITVDKAQPDK 86
>gi|402086828|gb|EJT81726.1| nucleolar protein 4 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 749
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 13/90 (14%)
Query: 10 GQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQK 69
G E L F+ + FP+ + AT+++D S+GYG+VTF+ ++A +
Sbjct: 59 GATGESLTEFFSQH---FPVKH----------ATVVVDPKTKTSRGYGFVTFTDPDDAIQ 105
Query: 70 ALADMNGKLLDGRVIFVDNVRPSRRYNTDA 99
A +N +LLDGR + +D P R T A
Sbjct: 106 AKEKLNNELLDGRRLRLDIAEPRHRAATKA 135
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 50 KNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
K + G+G++T + A+ A+ +NGK +DGR I VD
Sbjct: 198 KGKLSGFGFITLRGRKNAETAIEKLNGKTVDGRPIAVD 235
>gi|409079870|gb|EKM80231.1| hypothetical protein AGABI1DRAFT_73218 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 568
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ +AT+ +D+ RS+G+GYV FST + +KAL MNG +DGR I VD
Sbjct: 334 VSSATVQLDRNTGRSRGFGYVHFSTADAVEKAL-KMNGYEIDGRAIKVD 381
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 12 VTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKAL 71
+TED ++ YF + + + D+ + KG+GYV E+A+KA
Sbjct: 419 ITEDGLWSYFDGHSVKTIR-------------LPTDRETGQLKGFGYVELENVEDAKKAF 465
Query: 72 ADMNGKLLDGRVIFVDNVRP 91
++G+ ++GR + VD +P
Sbjct: 466 EAISGQEIEGRRVRVDYSQP 485
>gi|328833805|gb|AEB52382.1| glycine-rich RNA-binding protein, partial [Fundulus notatus]
gi|328833807|gb|AEB52383.1| glycine-rich RNA-binding protein, partial [Fundulus olivaceus]
gi|328833809|gb|AEB52384.1| glycine-rich RNA-binding protein, partial [Fundulus olivaceus]
Length = 106
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+I DK RS+G+G+V + E+A+ AL MNGK LDGR I VD
Sbjct: 2 VIRDKETGRSRGFGFVKYDNVEDAKDALDAMNGKTLDGRAIRVD 45
>gi|302762761|ref|XP_002964802.1| hypothetical protein SELMODRAFT_69504 [Selaginella moellendorffii]
gi|300167035|gb|EFJ33640.1| hypothetical protein SELMODRAFT_69504 [Selaginella moellendorffii]
Length = 94
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPL 101
A +IMD+ RS+G+G+VTF + EA+ A+ M+G L GR I VD Y +D P
Sbjct: 24 ARVIMDRETGRSRGFGFVTFENDNEAKAAVQGMDGHELGGRSIRVD-------YASDRPS 76
Query: 102 A 102
A
Sbjct: 77 A 77
>gi|302791061|ref|XP_002977297.1| hypothetical protein SELMODRAFT_107195 [Selaginella
moellendorffii]
gi|300154667|gb|EFJ21301.1| hypothetical protein SELMODRAFT_107195 [Selaginella
moellendorffii]
Length = 180
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
+ A ++ D+ NRS+G+G+VTF EE + A+ M+ + L+GR I V P R
Sbjct: 31 IIEAKVVFDRETNRSRGFGFVTFEDEESMENAIRKMHNQELEGRSITVSKAEPPR 85
>gi|148229527|ref|NP_001085857.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
laevis]
gi|49118872|gb|AAH73435.1| MGC80927 protein [Xenopus laevis]
Length = 626
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V+F E+A KA+ DMNGK ++G+++FV R ++ A L R+
Sbjct: 222 VMTDPSGKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFVG--RAQKKVERQAELKRR 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 37/48 (77%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A +++++G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEEG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
+ + ++ D+ N SKGY +V F T++ A +A+ MNG LL+ R +FV + R
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRR 177
>gi|351730017|ref|ZP_08947708.1| RNP-1 like RNA-binding protein [Acidovorax radicis N35]
Length = 115
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 35/51 (68%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+A ++MD+ RSKG+G+V ++ E AQ A++ ++G +DGR I V+ RP
Sbjct: 31 SAKVMMDRETGRSKGFGFVEMASAEVAQAAISALHGMSVDGRSIVVNLARP 81
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK ++G++IFV R ++ A L R+
Sbjct: 222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|296088109|emb|CBI35498.3| unnamed protein product [Vitis vinifera]
Length = 153
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 37/55 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
L A +++DK RS+G+G+V+F ++ + A+ +M+G LDGR I VD +P++
Sbjct: 33 LVEAKVVVDKFSGRSRGFGFVSFDDKQAMEDAIKEMHGMDLDGRSITVDKAQPNQ 87
>gi|242046266|ref|XP_002461004.1| hypothetical protein SORBIDRAFT_02g039025 [Sorghum bicolor]
gi|241924381|gb|EER97525.1| hypothetical protein SORBIDRAFT_02g039025 [Sorghum bicolor]
Length = 83
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 35/46 (76%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
A ++ D+ R KG+G+V +S++ EA+KA+ M+G++L GR+IFV+
Sbjct: 35 ARLMRDQQTGRIKGFGFVKYSSQAEAEKAVKAMDGRILRGRLIFVE 80
>gi|327301713|ref|XP_003235549.1| Nucleolar protein 4 [Trichophyton rubrum CBS 118892]
gi|326462901|gb|EGD88354.1| Nucleolar protein 4 [Trichophyton rubrum CBS 118892]
Length = 696
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 13/82 (15%)
Query: 13 TEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALA 72
TE L ++ +S PL AT+++D +SKGYG+VTF+ E+AQ A
Sbjct: 60 TESLTEYFSQSYPLK-------------HATVVLDPQTKQSKGYGFVTFTDHEDAQSAAR 106
Query: 73 DMNGKLLDGRVIFVDNVRPSRR 94
++N + +G+ I ++ P R
Sbjct: 107 ELNNSVFEGKKIKIELAEPRHR 128
Score = 37.7 bits (86), Expect = 0.98, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 28 PLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
P H L+ S+ ++ K +R G+G+V + A++A+ +NGK +DGR + VD
Sbjct: 174 PQHLELLFRSYGKIKHAVVPKKGSRVAGFGFVVMRGRKNAERAIEGVNGKEVDGRTLAVD 233
>gi|194336480|ref|YP_002018274.1| RNP-1 like RNA-binding protein [Pelodictyon phaeoclathratiforme
BU-1]
gi|194308957|gb|ACF43657.1| RNP-1 like RNA-binding protein [Pelodictyon phaeoclathratiforme
BU-1]
Length = 95
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 27/89 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAFS+FG+V A+II DK RSKG+G+V
Sbjct: 17 LRDAFSEFGEVAN---------------------------ASIINDKFSGRSKGFGFVEM 49
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVR 90
+ EA++A+ MNGK L+GR + V+ +
Sbjct: 50 PKDSEAREAIESMNGKDLNGRTVTVNEAK 78
>gi|268566587|ref|XP_002639761.1| C. briggsae CBR-PAB-1 protein [Caenorhabditis briggsae]
Length = 651
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
+ + + +D+ + SKGYG+V F TEE AQ A+ +NG LL G+ +FV +P + N +
Sbjct: 146 ILSCKVAIDE-EGSSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRE 204
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
+ +A ++ D+ RSKG+G+V F EEA A+++MN K++ + ++V R+ +
Sbjct: 343 ITSAKVMTDE-NGRSKGFGFVCFEKPEEATTAVSEMNSKMVCSKPLYV--ALAQRKEDRR 399
Query: 99 APLARQSAQ 107
A LA Q Q
Sbjct: 400 AQLASQYMQ 408
>gi|343432668|ref|NP_001230348.1| RNA binding motif (RNP1, RRM) protein 3 [Sus scrofa]
Length = 156
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
++ D+ RS+G+G++TF+ E A A+ MNG+ LDGR I VD+ S R
Sbjct: 37 VVKDRETQRSRGFGFITFTNPEHASNAMRAMNGESLDGRQIRVDHAGKSAR 87
>gi|417403591|gb|JAA48595.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 644
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G+VIFV R ++ A L R+
Sbjct: 222 VMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|358367775|dbj|GAA84393.1| glycine-rich RNA-binding protein [Aspergillus kawachii IFO 4308]
Length = 117
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
A ++ D +RS+G+G+V F+++ EA A+ MN + DGRVI VD SR
Sbjct: 31 AIVVKDHDTHRSRGFGFVRFASDAEADAAMNAMNNQEFDGRVIRVDKASESR 82
>gi|341900148|gb|EGT56083.1| hypothetical protein CAEBREN_04295 [Caenorhabditis brenneri]
Length = 649
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
+ + + +D+ + SKGYG+V F TEE AQ A+ +NG LL G+ +FV +P + N +
Sbjct: 146 ILSCKVAIDE-EGSSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRE 204
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
+ +A ++ D+ RSKG+G+V F EEA A+ +MN K++ + ++V R+ +
Sbjct: 343 ITSAKVMTDE-NGRSKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYV--ALAQRKEDRR 399
Query: 99 APLARQSAQ 107
A LA Q Q
Sbjct: 400 AQLASQYMQ 408
>gi|15822703|gb|AAL07518.1| RNA-binding protein precursor [Nicotiana tabacum]
Length = 277
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 27/93 (29%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L +AFSQ+G V E A +IMD+ RS+G+G+++F
Sbjct: 56 LKEAFSQYGDVIE---------------------------ARVIMDRDTGRSRGFGFISF 88
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
+ EEA AL M+G+ L GR I V+ RR
Sbjct: 89 PSSEEAASALQAMDGQDLHGRRIRVNYATEKRR 121
>gi|391332716|ref|XP_003740776.1| PREDICTED: polyadenylate-binding protein 1-like [Metaseiulus
occidentalis]
Length = 660
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 35/48 (72%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++MD RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 322 ITSAKVMMDSTGARSKGFGFVCFSSPEEATKAVTEMNGRIIVQKPLYV 369
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ + + D+ N S+GYG+V F TEE A +A+ +NG LL+ + +FV P
Sbjct: 125 ILSCRVATDEQGN-SRGYGFVHFETEEAANEAINKVNGMLLNEKKVFVGKFVP 176
>gi|20257693|gb|AAM16012.1| glycine-rich RNA binding protein [Zea mays]
Length = 153
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ + II+D+ RS+G+G+VTFS + + A+ MNGK LDGR I V+ +
Sbjct: 41 VLESKIILDRETQRSRGFGFVTFSXXDAMRSAIEGMNGKELDGRNITVNEAQS 93
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G+VIFV R ++ A L R+
Sbjct: 222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|226505736|ref|NP_001150149.1| LOC100283778 [Zea mays]
gi|195605606|gb|ACG24633.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195606158|gb|ACG24909.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195637130|gb|ACG38033.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195645710|gb|ACG42323.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|238009788|gb|ACR35929.1| unknown [Zea mays]
gi|413951537|gb|AFW84186.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 156
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 29/93 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L +AFS FG+VTE A +I D+ RS+G+G+V +
Sbjct: 53 LREAFSSFGEVTE---------------------------ARVITDRETGRSRGFGFVNY 85
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD--NVRPS 92
S + A++A++ M+GK +DGR + V+ N RP+
Sbjct: 86 SDSDAAKEAISAMDGKEIDGRQVRVNMANERPA 118
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G+VIFV R ++ A L R+
Sbjct: 222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G+VIFV R ++ A L R+
Sbjct: 222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|301790633|ref|XP_002930398.1| PREDICTED: polyadenylate-binding protein 4-like [Ailuropoda
melanoleuca]
Length = 644
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G+VIFV R ++ A L R+
Sbjct: 222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G+VIFV R ++ A L R+
Sbjct: 222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G+VIFV R ++ A L R+
Sbjct: 222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK ++G++IFV R ++ A L R+
Sbjct: 222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|218199974|gb|EEC82401.1| hypothetical protein OsI_26770 [Oryza sativa Indica Group]
Length = 201
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 33/45 (73%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
A II+D+ +SKGYG++T+++ EEA A+ M+GK L GR++ V
Sbjct: 23 ARIIIDRDTGKSKGYGFITYTSSEEAAAAVTAMDGKDLQGRIVRV 67
>gi|390342940|ref|XP_001198098.2| PREDICTED: RNA-binding protein 39-like [Strongylocentrotus
purpuratus]
Length = 666
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
++MD NRSKGYG++TF E+A++AL +NG L GR + V++V AP
Sbjct: 336 LMMDTDANRSKGYGFITFHDAEDAKRALDQLNGFELAGRPMKVNHVTERNEQGQQAP 392
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G+VIFV R ++ A L R+
Sbjct: 222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|20152613|emb|CAD29693.1| putative glycine rich protein [Rumex obtusifolius]
Length = 168
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ + II D+ RS+G+G+VTFS+E+ + A+ MNG+ LDGR I V+ +
Sbjct: 33 VLESKIINDRETGRSRGFGFVTFSSEQAMRDAIEGMNGQDLDGRNITVNEAQS 85
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G+VIFV R ++ A L R+
Sbjct: 222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G+VIFV R ++ A L R+
Sbjct: 222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|226500552|ref|NP_001148723.1| ELAV-like protein 4 [Zea mays]
gi|195621654|gb|ACG32657.1| ELAV-like protein 4 [Zea mays]
Length = 127
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 27/86 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L +AFS+FGQV E A +I D+ S+G+G+V +
Sbjct: 50 LKEAFSKFGQVIE---------------------------ARVITDRISGYSRGFGFVKY 82
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD 87
+T +EA +A+ M+GK LDG VIF +
Sbjct: 83 ATVQEAGEAIEGMDGKFLDGWVIFAE 108
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G+VIFV R ++ A L R+
Sbjct: 222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|302498318|ref|XP_003011157.1| hypothetical protein ARB_02679 [Arthroderma benhamiae CBS 112371]
gi|291174705|gb|EFE30517.1| hypothetical protein ARB_02679 [Arthroderma benhamiae CBS 112371]
Length = 803
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 13/82 (15%)
Query: 13 TEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALA 72
TE L ++ +S PL AT+++D +SKGYG+VTF+ E+AQ A
Sbjct: 108 TESLTEYFSQSYPLK-------------HATVVLDPQTKQSKGYGFVTFTDHEDAQSAAR 154
Query: 73 DMNGKLLDGRVIFVDNVRPSRR 94
++N + +G+ I ++ P R
Sbjct: 155 ELNNSVFEGKKIKIELAEPRHR 176
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 28 PLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
P H L+ S+ ++ K +R G+G+V + A++A+ +NGK +DGR + VD
Sbjct: 222 PQHLELLFRSYGKIKHAVVPKKGSRVAGFGFVVMRGRKNAERAIEGVNGKEVDGRTLAVD 281
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G+VIFV R ++ A L R+
Sbjct: 222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|193650237|ref|XP_001943392.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 650
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 35/46 (76%), Gaps = 2/46 (4%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+A ++MD G RSKG+G+V FS+ EEA KA+ DMNG+++ + ++V
Sbjct: 315 SAKVMMDDG--RSKGFGFVYFSSPEEATKAVTDMNGRIVGTKPLYV 358
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + + D+ N SKGYG+V F T++ A +++ +NG LL+G+ +FV
Sbjct: 116 ILSCKVAQDETGN-SKGYGFVHFETKQSATQSIEKVNGMLLNGKKVFV 162
>gi|6911144|gb|AAF31403.1|AF200322_1 putative glycine-rich RNA binding protein 3 [Catharanthus roseus]
Length = 164
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L++AFSQ+G++ E + II D+ RS+G+G+VTF
Sbjct: 24 LSEAFSQYGEILE---------------------------SKIINDRETGRSRGFGFVTF 56
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
E+ + A+ MNG+ LDGR I V+ +
Sbjct: 57 KDEQSMRDAIEGMNGQTLDGRNITVNEAQS 86
>gi|77166221|ref|YP_344746.1| RNA-binding protein, RNP-1 [Nitrosococcus oceani ATCC 19707]
gi|254435869|ref|ZP_05049376.1| RNA-binding protein [Nitrosococcus oceani AFC27]
gi|76884535|gb|ABA59216.1| RNA-binding protein, RNP-1 [Nitrosococcus oceani ATCC 19707]
gi|207088980|gb|EDZ66252.1| RNA-binding protein [Nitrosococcus oceani AFC27]
Length = 119
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
+A +I+DK NRSKG+G+V +++E+A+ A+ +M+ + GR + V+ RP + +
Sbjct: 46 SAKVIVDKFSNRSKGFGFVEMASKEDAEAAIKEMHDSDIKGRQVVVNEARPRNESSNNGG 105
Query: 101 LARQSA 106
R
Sbjct: 106 FRRNDG 111
>gi|402225922|gb|EJU05982.1| RNA-binding domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 541
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
+ + + +D+ RS+G+G++ FST + KAL M GK +DGR I VD + R NT
Sbjct: 314 IVSVRVQLDRQSGRSRGFGFIDFSTSDAVAKALETMQGKEVDGRAIAVDKTESNPR-NTQ 372
Query: 99 APLAR 103
A A+
Sbjct: 373 ARAAK 377
>gi|312374824|gb|EFR22303.1| hypothetical protein AND_15459 [Anopheles darlingi]
Length = 560
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 34/58 (58%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPL 101
+IMD RSKGYG++TF ++A+KAL +NG L GR + V NV T A L
Sbjct: 334 LIMDTDTGRSKGYGFITFHNADDAKKALEQLNGFELAGRPMKVGNVTERLDVTTHASL 391
>gi|449507320|ref|XP_004162998.1| PREDICTED: glycine-rich RNA-binding protein blt801-like [Cucumis
sativus]
Length = 139
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ A I+ D+ RS+G+G+VTF EE + A+ MNG +LDGR I V+
Sbjct: 34 IVEAKIVSDRETGRSRGFGFVTFLEEEAMRSAIEAMNGHILDGRNITVN 82
>gi|449462238|ref|XP_004148848.1| PREDICTED: glycine-rich RNA-binding protein blt801-like [Cucumis
sativus]
gi|449507318|ref|XP_004162997.1| PREDICTED: glycine-rich RNA-binding protein blt801-like [Cucumis
sativus]
Length = 141
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ A I+ D+ RS+G+G+VTF EE + A+ MNG +LDGR I V+
Sbjct: 34 IVEAKIVSDRETGRSRGFGFVTFLEEEAMRSAIEAMNGHILDGRNITVN 82
>gi|449462236|ref|XP_004148847.1| PREDICTED: glycine-rich RNA-binding protein blt801-like [Cucumis
sativus]
gi|449507315|ref|XP_004162996.1| PREDICTED: glycine-rich RNA-binding protein blt801-like [Cucumis
sativus]
Length = 144
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ A I+ D+ RS+G+G+VTF EE + A+ MNG +LDGR I V+
Sbjct: 34 IVEAKIVSDRETGRSRGFGFVTFLEEEAMRSAIEAMNGHILDGRNITVN 82
>gi|449462234|ref|XP_004148846.1| PREDICTED: glycine-rich RNA-binding protein blt801-like [Cucumis
sativus]
Length = 156
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ A I+ D+ RS+G+G+VTF EE + A+ MNG +LDGR I V+
Sbjct: 34 IVEAKIVSDRETGRSRGFGFVTFLEEEAMRSAIEAMNGHILDGRNITVN 82
>gi|449462232|ref|XP_004148845.1| PREDICTED: glycine-rich RNA-binding protein blt801-like [Cucumis
sativus]
gi|449507311|ref|XP_004162995.1| PREDICTED: glycine-rich RNA-binding protein blt801-like [Cucumis
sativus]
Length = 171
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ A I+ D+ RS+G+G+VTF EE + A+ MNG +LDGR I V+
Sbjct: 34 IVEAKIVSDRETGRSRGFGFVTFLEEEAMRSAIEAMNGHILDGRNITVN 82
>gi|20975278|dbj|BAB92956.1| cold inducible RNA-binding protein beta [Hyla japonica]
Length = 166
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
++ D+ RS+G+G+VTF E+A+ A+ MNGK +DGR I VD S
Sbjct: 38 VVKDRETQRSRGFGFVTFENPEDAKDAMEAMNGKSVDGRQIRVDQAGKS 86
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V+F EEA KA+ +MNGK ++G+++FV R ++ A L R+
Sbjct: 222 VMTDPTGKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMLFVG--RAQKKAERQAELKRR 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T++ A +A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 170
>gi|239813338|ref|YP_002942248.1| RNP-1 like RNA-binding protein [Variovorax paradoxus S110]
gi|239799915|gb|ACS16982.1| RNP-1 like RNA-binding protein [Variovorax paradoxus S110]
Length = 137
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ +A ++M++ RSKG+G+V T+ EA A+ MNG L GR + V+ RP
Sbjct: 29 IVSAKVMMERDTGRSKGFGFVEMGTDAEALAAVEAMNGHSLQGRALTVNEARP 81
>gi|344279674|ref|XP_003411612.1| PREDICTED: polyadenylate-binding protein 1 [Loxodonta africana]
Length = 612
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M S+G+G+V F EEAQKA+ DMNGK + GR ++V R +R L R+
Sbjct: 222 VMKDNNGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRQLYVG--RAQKRVERQNELKRK 279
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 38/56 (67%), Gaps = 3/56 (5%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
+ + ++ D+ + S+G+G+V F T E AQ+A++ MNG LL+ R +FV + + SRR
Sbjct: 125 ILSCKVVCDE--HGSRGFGFVHFETHEAAQQAISTMNGMLLNDRKVFVGHFK-SRR 177
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + +M +G + SKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 319 VITSAKVMTEGGH-SKGFGFVCFSSPEEATKAVTEMNGRIIGTKPLYV 365
>gi|297739973|emb|CBI30155.3| unnamed protein product [Vitis vinifera]
Length = 190
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAFS++G++ E LV +M++ R +G+G++TF
Sbjct: 23 LEDAFSRYGKILESLV---------------------------MMERDTGRPRGFGFITF 55
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ + A+ +M+G+ LDGRVI V+ +P
Sbjct: 56 ADHRAMEDAIREMHGRELDGRVISVNKAQP 85
>gi|226496497|ref|NP_001150207.1| LOC100283837 [Zea mays]
gi|195621336|gb|ACG32498.1| nucleolin [Zea mays]
gi|195637560|gb|ACG38248.1| nucleolin [Zea mays]
gi|223948323|gb|ACN28245.1| unknown [Zea mays]
gi|413917478|gb|AFW57410.1| nucleolin [Zea mays]
Length = 140
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L +AF++FG+V LH A ++ D+ SKG+G+V +
Sbjct: 51 LREAFAEFGEV----------------LH-----------ARVVTDRVSGFSKGFGFVRY 83
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+T EEA K + +GK LDG VIF + +P
Sbjct: 84 ATTEEAAKGIEGKDGKFLDGWVIFAEYAKP 113
>gi|417403696|gb|JAA48646.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 660
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G+VIFV R ++ A L R+
Sbjct: 222 VMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|410953832|ref|XP_003983574.1| PREDICTED: polyadenylate-binding protein 1-like [Felis catus]
Length = 616
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M S+G+G+V F EEAQKA+ DMNGK + GR+++V R +R L R+
Sbjct: 222 VMRDDSGHSRGFGFVNFEKHEEAQKAVTDMNGKEVRGRLLYVG--RAQKRVERQNELKRR 279
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
+ + ++ D + S+G+G+V F T E AQ+A+ MNG LL+ R +FV + + SRR
Sbjct: 125 ILSCKVVCDN--HGSRGFGFVHFETHEAAQQAIVTMNGMLLNDRKVFVGHFK-SRR 177
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + +M +G SKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 319 VITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365
>gi|298246745|ref|ZP_06970550.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM
44963]
gi|297549404|gb|EFH83270.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM
44963]
Length = 109
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
AT+I D+ RSKG+G+V S+++EA+ A+ +NG L R I V+ R R
Sbjct: 30 ATVITDRETGRSKGFGFVEMSSDDEARVAIEQLNGSTLGNRTITVNEARERR 81
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G+VIFV R ++ A L R+
Sbjct: 222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|297802026|ref|XP_002868897.1| hypothetical protein ARALYDRAFT_490700 [Arabidopsis lyrata subsp.
lyrata]
gi|297314733|gb|EFH45156.1| hypothetical protein ARALYDRAFT_490700 [Arabidopsis lyrata subsp.
lyrata]
Length = 164
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ + II D+ RS+G+G+VTF E+ + A+ +MNGK LDGR I V+
Sbjct: 32 VLDSKIINDRETGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRTITVN 80
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V+F E+A KA+ +MNGK ++G+++FV R ++ A L R+
Sbjct: 222 VMTDSSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ +EA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYV 365
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T++ A +A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 170
>gi|356550257|ref|XP_003543504.1| PREDICTED: cold-inducible RNA-binding protein-like [Glycine max]
Length = 86
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 33/46 (71%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
A + +D R KG+G+V+F +E EA+KA MNG++++GR+I V+
Sbjct: 36 ADLALDPITKRPKGFGFVSFKSEIEAEKACKAMNGRIVNGRLILVE 81
>gi|195642478|gb|ACG40707.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 153
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 29/93 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L +AFS FG+VTE A +I D+ RS+G+G+V +
Sbjct: 53 LREAFSSFGEVTE---------------------------ARVITDRETGRSRGFGFVNY 85
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD--NVRPS 92
S + A++A++ M+GK +DGR + V+ N RP+
Sbjct: 86 SDSDAAKEAISAMDGKEIDGRQVRVNMANERPA 118
>gi|12659074|gb|AAK01176.1| RNA-binding protein [Triticum aestivum]
Length = 183
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAF +FG+VTE +++DK RS+G+G+VTF
Sbjct: 23 LKDAFGKFGRVTE---------------------------TKVVLDKFSGRSRGFGFVTF 55
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
++ ++A+ MNG LDGR I V+ +P
Sbjct: 56 DDKKAMEEAVEAMNGIDLDGRNITVERAQP 85
>gi|74212334|dbj|BAE30919.1| unnamed protein product [Mus musculus]
Length = 636
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Query: 40 FAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ ++ D+G +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 218 LSVKVMTDEG-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>gi|411009683|ref|ZP_11386012.1| RNA-binding protein [Aeromonas aquariorum AAK1]
Length = 81
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLAR 103
II+D+ +SKG+G++ EA+KA+A ++G + GR I V+ +P TDAP R
Sbjct: 21 IIIDRDTGQSKGFGFIEMPVNGEAEKAIAGLHGTEIGGRTITVNQAKP----KTDAPRGR 76
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G+VIFV R ++ A L R+
Sbjct: 222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G+VIFV R ++ A L R+
Sbjct: 222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|388511713|gb|AFK43918.1| unknown [Lotus japonicus]
Length = 141
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
A ++ D+ SKG+G+V ++T EEA K + M+GK LDG VIF + + S
Sbjct: 73 ARVVTDRVSGYSKGFGFVKYATIEEASKGIQGMDGKFLDGWVIFAEYAKSS 123
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G+VIFV R ++ A L R+
Sbjct: 222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G+VIFV R ++ A L R+
Sbjct: 222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|281344898|gb|EFB20482.1| hypothetical protein PANDA_020836 [Ailuropoda melanoleuca]
Length = 674
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G+VIFV R ++ A L R+
Sbjct: 235 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG--RAQKKVERQAELKRK 292
Query: 105 SAQSPEE 111
Q +E
Sbjct: 293 FEQLKQE 299
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 333 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 378
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 138 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 183
>gi|319762031|ref|YP_004125968.1| rnp-1 like RNA-binding protein [Alicycliphilus denitrificans BC]
gi|330826150|ref|YP_004389453.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans
K601]
gi|317116592|gb|ADU99080.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans BC]
gi|329311522|gb|AEB85937.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans
K601]
Length = 102
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 36/51 (70%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+A ++M++ RSKG+G+V ++ EAQ+A+ ++GK +DGR + V+ RP
Sbjct: 31 SAKVMMERDTGRSKGFGFVEMASGAEAQEAINGLHGKSVDGRALTVNVARP 81
>gi|297804934|ref|XP_002870351.1| hypothetical protein ARALYDRAFT_493528 [Arabidopsis lyrata subsp.
lyrata]
gi|297316187|gb|EFH46610.1| hypothetical protein ARALYDRAFT_493528 [Arabidopsis lyrata subsp.
lyrata]
Length = 154
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 29/93 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAF+ FG+V + A +I+D+ RS+G+G+V F
Sbjct: 51 LRDAFAHFGEVVD---------------------------AKVIVDRETGRSRGFGFVNF 83
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD--NVRPS 92
+ E A A+++M+GK L+GR I V+ N RPS
Sbjct: 84 NDEGAASAAISEMDGKDLNGRNIRVNVANERPS 116
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G+VIFV R ++ A L R+
Sbjct: 222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEIGGKVIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|125558733|gb|EAZ04269.1| hypothetical protein OsI_26412 [Oryza sativa Indica Group]
Length = 133
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 27/86 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L +AFS+FGQV E A +I D+ S+G+G+V +
Sbjct: 51 LREAFSKFGQVIE---------------------------ARVITDRISGYSRGFGFVKY 83
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD 87
+T EEA + + M+GK LDG VIF +
Sbjct: 84 ATVEEAGEGIKGMDGKFLDGWVIFAE 109
>gi|307207781|gb|EFN85399.1| Polyadenylate-binding protein 1 [Harpegnathos saltator]
Length = 552
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
+ +A ++M++G RSKG+G+V FS EEA KA+ +MNG+++ + ++V + R+ +
Sbjct: 245 ITSAKVMMEEG--RSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQ--RKEDRK 300
Query: 99 APLARQSAQ 107
A LA Q Q
Sbjct: 301 AHLASQYMQ 309
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
SKGYG+V F TEE A K++ +NG LL+G+ ++V P +
Sbjct: 138 SKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRK 178
>gi|302780311|ref|XP_002971930.1| hypothetical protein SELMODRAFT_172546 [Selaginella
moellendorffii]
gi|300160229|gb|EFJ26847.1| hypothetical protein SELMODRAFT_172546 [Selaginella
moellendorffii]
Length = 173
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
+ A ++ D+ NRS+G+G+VTF EE + A+ M+ + L+GR I V P R
Sbjct: 31 IIEAKVVFDRETNRSRGFGFVTFEDEESMENAIRKMHNQELEGRSITVSKAEPPR 85
>gi|20257697|gb|AAM16014.1| glycine-rich RNA binding protein [Zea mays]
Length = 148
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ + II+D+ RS+G+G+VTFS + A+ MNGK LDGR I V+
Sbjct: 37 VLESKIILDRETQRSRGFGFVTFSXXXXXRSAIEGMNGKELDGRNITVN 85
>gi|544416|sp|Q05966.1|GRP10_BRANA RecName: Full=Glycine-rich RNA-binding protein 10
gi|17819|emb|CAA78513.1| glycine-rich RNA binding protein [Brassica napus]
Length = 169
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ II D+ RS+G+G+VTF E+ + A+ +MNGK LDGR I V+ +
Sbjct: 35 SKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQS 84
>gi|395802857|ref|ZP_10482109.1| RNP-1 like RNA-binding protein [Flavobacterium sp. F52]
gi|395435298|gb|EJG01240.1| RNP-1 like RNA-binding protein [Flavobacterium sp. F52]
Length = 114
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ II DK RSKG+G+V + EAQKA+ ++NG ++ GR I V+ P
Sbjct: 29 SVKIITDKFTGRSKGFGFVEMPNDSEAQKAIDELNGAVVSGRTIVVNKSEP 79
>gi|298244419|ref|ZP_06968225.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM
44963]
gi|297551900|gb|EFH85765.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM
44963]
Length = 106
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
AT+I D+ RSKG+G+V S+++EA+ A+ +NG L R I V+ R R
Sbjct: 30 ATVITDRETGRSKGFGFVEMSSDDEARAAIEQLNGSTLGDRTITVNEARERR 81
>gi|432095458|gb|ELK26654.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 657
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G+VIFV R ++ A L R+
Sbjct: 218 VMRDPTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG--RAQKKVERQAELKRK 275
Query: 105 SAQSPEE 111
Q +E
Sbjct: 276 FEQLKQE 282
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 34/45 (75%), Gaps = 2/45 (4%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 319 AEVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 361
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 121 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 166
>gi|296203566|ref|XP_002748951.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Callithrix
jacchus]
Length = 604
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNGK++ + ++V
Sbjct: 288 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGKIVATKPLYV 333
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 36 DSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
D L + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ + +FV
Sbjct: 90 DPSLRKSGVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDQKVFV 138
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M + +SKG+G+V+F E+AQKA+ ++NGK L G+ I+V
Sbjct: 190 VMTDERGKSKGFGFVSFERGEDAQKAVDELNGKELSGKQIYV 231
>gi|421497038|ref|ZP_15944229.1| RNA-binding protein [Aeromonas media WS]
gi|407183931|gb|EKE57797.1| RNA-binding protein [Aeromonas media WS]
Length = 81
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 31/102 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L + FSQFGQV + II+D+ +SKG+G++
Sbjct: 6 LTNVFSQFGQVDK---------------------------VDIIIDRDTGQSKGFGFIEM 38
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLAR 103
+A+KA+A+++G + GR I V+ +P TDAP R
Sbjct: 39 PVNGDAEKAIAELHGTEIGGRTITVNQAKPK----TDAPRGR 76
>gi|338722679|ref|XP_001915947.2| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 4-like [Equus caballus]
Length = 397
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V+F + E AQKA+ +MNGK ++G+++FV R ++ A L +
Sbjct: 221 VMTDSTGKSKGFGFVSFYSHEAAQKAVEEMNGKDINGQLLFVG--RAQKKAERQAELKQM 278
Query: 105 SAQSPEE 111
Q +E
Sbjct: 279 FEQQKQE 285
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 37 SFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 79
SF + + + K + RSKG+G + FS+ EEA +A+ +MNG++L
Sbjct: 315 SFGSISRVKVMKEEGRSKGFGLICFSSPEEATRAMTEMNGRIL 357
>gi|395330687|gb|EJF63070.1| RNA-binding domain-containing protein [Dichomitus squalens LYAD-421
SS1]
Length = 272
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 32/44 (72%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
I+ D+ +RS+G+G++T ST EEA + + ++NG L+GR I VD
Sbjct: 106 IVYDQRSDRSRGFGFITMSTTEEATRCIKELNGVELNGRRIRVD 149
>gi|20257701|gb|AAM16016.1| glycine-rich RNA binding protein [Zea mays]
Length = 154
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ + II+D+ RS+G+G+VTFS + A+ MNGK LDGR I V+ +
Sbjct: 43 VLESKIILDRETQRSRGFGFVTFSXXXXXRSAIEGMNGKELDGRNITVNEAQS 95
>gi|448521353|ref|XP_003868484.1| Pub1 protein [Candida orthopsilosis Co 90-125]
gi|380352824|emb|CCG25580.1| Pub1 protein [Candida orthopsilosis]
Length = 426
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 36 DSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRY 95
DSF A ++ D +RS+GYG+VTF +E+A+ AL MNG+ L GR I + +
Sbjct: 175 DSFK-EAHVMWDMQTSRSRGYGFVTFGKQEDAELALQTMNGEWLGGRAIRCNWAAHKQSN 233
Query: 96 NTD 98
N D
Sbjct: 234 NRD 236
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G+VIFV R ++ A L R+
Sbjct: 222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|320583460|gb|EFW97673.1| nuclear localization sequence binding protein [Ogataea
parapolymorpha DL-1]
Length = 500
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ +A ++ ++ RS+GYGYV F ++E+AQKAL G+ ++GR I +D
Sbjct: 286 VLSARVMTERETGRSRGYGYVDFESKEQAQKALEQFQGREIEGRPINLD 334
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 29 LHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
L F + I + KG+GYV F + +EA+ AL +NG+ + GR + +D
Sbjct: 381 LKEFFEQHGTVLGIRIPTHPESEQPKGFGYVQFGSVDEAKAALEALNGEYIAGRPVRLD 439
>gi|313203177|ref|YP_004041834.1| rnp-1 like RNA-binding protein [Paludibacter propionicigenes WB4]
gi|312442493|gb|ADQ78849.1| RNP-1 like RNA-binding protein [Paludibacter propionicigenes WB4]
Length = 81
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
+ +IMD+ RSKG+ +V S EE A+K +A++NG DGR + V P +
Sbjct: 29 SCKLIMDRETRRSKGFAFVEMSDEEAAKKVIAELNGAEFDGRAMVVKEALPKK 81
>gi|90075670|dbj|BAE87515.1| unnamed protein product [Macaca fascicularis]
Length = 135
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
++ D+ RS+G+G++TF+ E A A+ MNG+ LDGR I VD+ S R
Sbjct: 37 VVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHAGKSAR 87
>gi|381206512|ref|ZP_09913583.1| RNA-binding protein [SAR324 cluster bacterium JCVI-SC AAA005]
Length = 85
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 27/93 (29%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L AFSQFG+V++ A++IMD+ NRSKG+G+V
Sbjct: 17 LRSAFSQFGKVSK---------------------------ASVIMDRVNNRSKGFGFVEM 49
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
E A+ +NG +DGR V+ +P +
Sbjct: 50 DDAAEGNSAVEALNGHQIDGRAWKVNEAKPREK 82
>gi|332030568|gb|EGI70256.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 678
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
+ +A ++M++G RSKG+G+V FS EEA KA+ +MNG+++ + ++V + R+ +
Sbjct: 365 ITSAKVMMEEG--RSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQ--RKEDRK 420
Query: 99 APLARQSAQ 107
A LA Q Q
Sbjct: 421 AHLASQYMQ 429
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
SKGYG+V F TEE A K++ +NG LL+G+ ++V P +
Sbjct: 181 SKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRK 221
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGK-LLDGRVIFV 86
+M K +S+G+G+V F + A++A+ ++NGK + +G+ ++V
Sbjct: 266 VMSKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEIAEGKCMYV 308
>gi|242048706|ref|XP_002462099.1| hypothetical protein SORBIDRAFT_02g018650 [Sorghum bicolor]
gi|241925476|gb|EER98620.1| hypothetical protein SORBIDRAFT_02g018650 [Sorghum bicolor]
Length = 242
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%)
Query: 29 LHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
L F + +AT+ G ++SKGYG+VTFS+EEE + A+A N L+G+ I V+
Sbjct: 182 LKNFFSEKGKILSATVSHIPGTSKSKGYGFVTFSSEEEVEAAVATFNNAELEGQPIRVN 240
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
A ++ DK NRS+ +G+VT ST EEA A+ +NG + GR I V+
Sbjct: 96 AEVMYDKYTNRSRRFGFVTMSTVEEANAAVEALNGTEVGGRKIKVN 141
>gi|224286824|gb|ACN41115.1| unknown [Picea sitchensis]
Length = 149
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
L A ++ D+ RS+G+G+V ++T E+A K M+GK LDG VIF D
Sbjct: 70 LVEARVVTDRISGRSRGFGFVRYATLEDAAKGKEGMDGKFLDGWVIFAD 118
>gi|444721742|gb|ELW62457.1| Polyadenylate-binding protein 4-like protein [Tupaia chinensis]
Length = 370
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V+F E AQKA+ +MNGK ++G++IFV R ++ A L +
Sbjct: 221 VMTDPSGKSKGFGFVSFDNHEAAQKAVEEMNGKDINGQLIFVG--RAQKKVERQAELKQM 278
Query: 105 SAQSPEE 111
Q E
Sbjct: 279 FEQQKRE 285
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 23/28 (82%)
Query: 52 RSKGYGYVTFSTEEEAQKALADMNGKLL 79
+SKG+G + FS+ EEA KA+ +MNG++L
Sbjct: 330 QSKGFGLICFSSPEEATKAMTEMNGQIL 357
Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQSAQ 107
SKGY +V F + A +A+ +MNGKLL +FV R R + +A L ++++
Sbjct: 136 SKGYAFVHFQNQSAADRAIEEMNGKLLKDCKVFVG--RFKNRKDREAELRNKASE 188
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G+VIFV R ++ A L R+
Sbjct: 222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|53714011|ref|YP_100003.1| RNA-binding protein [Bacteroides fragilis YCH46]
gi|60682207|ref|YP_212351.1| RNA-binding protein [Bacteroides fragilis NCTC 9343]
gi|265764361|ref|ZP_06092929.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|336410386|ref|ZP_08590866.1| hypothetical protein HMPREF1018_02883 [Bacteroides sp. 2_1_56FAA]
gi|375359004|ref|YP_005111776.1| putative RNA-binding protein [Bacteroides fragilis 638R]
gi|423250510|ref|ZP_17231526.1| hypothetical protein HMPREF1066_02536 [Bacteroides fragilis
CL03T00C08]
gi|423256011|ref|ZP_17236940.1| hypothetical protein HMPREF1067_03584 [Bacteroides fragilis
CL03T12C07]
gi|423271876|ref|ZP_17250846.1| hypothetical protein HMPREF1079_03928 [Bacteroides fragilis
CL05T00C42]
gi|423276340|ref|ZP_17255281.1| hypothetical protein HMPREF1080_03934 [Bacteroides fragilis
CL05T12C13]
gi|423283895|ref|ZP_17262779.1| hypothetical protein HMPREF1204_02317 [Bacteroides fragilis HMW
615]
gi|52216876|dbj|BAD49469.1| putative RNA-binding protein [Bacteroides fragilis YCH46]
gi|60493641|emb|CAH08430.1| putative RNA-binding protein [Bacteroides fragilis NCTC 9343]
gi|263256969|gb|EEZ28315.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|301163685|emb|CBW23239.1| putative RNA-binding protein [Bacteroides fragilis 638R]
gi|335945442|gb|EGN07255.1| hypothetical protein HMPREF1018_02883 [Bacteroides sp. 2_1_56FAA]
gi|392650093|gb|EIY43765.1| hypothetical protein HMPREF1067_03584 [Bacteroides fragilis
CL03T12C07]
gi|392652819|gb|EIY46477.1| hypothetical protein HMPREF1066_02536 [Bacteroides fragilis
CL03T00C08]
gi|392696732|gb|EIY89924.1| hypothetical protein HMPREF1079_03928 [Bacteroides fragilis
CL05T00C42]
gi|392697381|gb|EIY90566.1| hypothetical protein HMPREF1080_03934 [Bacteroides fragilis
CL05T12C13]
gi|404580441|gb|EKA85150.1| hypothetical protein HMPREF1204_02317 [Bacteroides fragilis HMW
615]
Length = 122
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ +A I+MD+ RSKG+G+V +EE A+A +N K +DG+ + V RP
Sbjct: 27 VISAKIVMDRETGRSKGFGFVEMPNDEEGNAAIAALNEKEIDGKTLAVSVARP 79
>gi|356576103|ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-like isoform 2 [Glycine
max]
Length = 642
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 33 LISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
L S+ + +M RSKG G+V+FST EEA KAL +MNGKL+ + ++V
Sbjct: 337 LFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEEASKALNEMNGKLIGRKPLYV 390
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 34 ISDSFLFAATIIMDK----GKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ D+F T++ K +SKGYG+V F EE AQ A+ +NG L++ + ++V
Sbjct: 139 LHDTFAAFGTVLSCKVALDSSGQSKGYGFVQFDNEEAAQNAIKRLNGMLINDKQVYV 195
>gi|356576101|ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-like isoform 1 [Glycine
max]
Length = 652
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 33 LISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
L S+ + +M RSKG G+V+FST EEA KAL +MNGKL+ + ++V
Sbjct: 337 LFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEEASKALNEMNGKLIGRKPLYV 390
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 34 ISDSFLFAATIIMDK----GKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ D+F T++ K +SKGYG+V F EE AQ A+ +NG L++ + ++V
Sbjct: 139 LHDTFAAFGTVLSCKVALDSSGQSKGYGFVQFDNEEAAQNAIKRLNGMLINDKQVYV 195
>gi|195338839|ref|XP_002036031.1| GM16278 [Drosophila sechellia]
gi|194129911|gb|EDW51954.1| GM16278 [Drosophila sechellia]
Length = 596
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNT 97
A +IMD RSKGYG++T+ ++A+KAL +NG L GR++ V NV NT
Sbjct: 365 AIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMKVGNVTERLDMNT 421
>gi|224055617|ref|XP_002298568.1| predicted protein [Populus trichocarpa]
gi|118486956|gb|ABK95311.1| unknown [Populus trichocarpa]
gi|222845826|gb|EEE83373.1| predicted protein [Populus trichocarpa]
Length = 276
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSR 93
A ++ D+ RS+G+G+VT S+E E A+A ++G+ LDGR I V+ RP R
Sbjct: 220 ARVVCDRETGRSRGFGFVTMSSETELNDAIAALDGQSLDGRAITVNIAQERPRR 273
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
A II ++ ++S+G+G+VT ST +EA+KA+ + L+GR + V+ P
Sbjct: 127 AEIIYNRETDQSRGFGFVTMSTVDEAEKAIEKFHRYDLNGRFLTVNKAAP 176
>gi|146299063|ref|YP_001193654.1| RNP-1 like RNA-binding protein [Flavobacterium johnsoniae UW101]
gi|146153481|gb|ABQ04335.1| RNP-1 like RNA-binding protein [Flavobacterium johnsoniae UW101]
Length = 114
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ II DK RSKG+G+V + EAQKA+ ++NG ++ GR I V+ P
Sbjct: 29 SVKIITDKFTGRSKGFGFVEMPNDSEAQKAIDELNGAVVSGRTIVVNKSEP 79
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G+VIFV R ++ A L R+
Sbjct: 222 VMRDPTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|395007942|ref|ZP_10391636.1| RRM domain-containing RNA-binding protein [Acidovorax sp. CF316]
gi|394314048|gb|EJE51000.1| RRM domain-containing RNA-binding protein [Acidovorax sp. CF316]
Length = 117
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+A ++MD+ RSKG+G+V ++ E AQ A+ ++G +DGR I V+ RP
Sbjct: 31 SAKVMMDRETGRSKGFGFVEMASAEVAQAAITGLHGMSVDGRSIVVNLARP 81
>gi|338729124|ref|XP_003365829.1| PREDICTED: putative RNA-binding protein 3-like isoform 2 [Equus
caballus]
Length = 135
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
++ D+ RS+G+G++TF+ E A A+ MNG+ LDGR I VD+ S R
Sbjct: 37 VVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSAR 87
>gi|13785947|gb|AAK39523.1| RNA-binding motif protein 3 [Rattus norvegicus]
Length = 127
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
++ D+ RS+G+G++TF+ E A A+ MNG+ LDGR I VD+ S R
Sbjct: 37 VVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSAR 87
>gi|402078039|gb|EJT73388.1| nuclear localization sequence binding protein [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 499
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ +A +I D+ RSKG+GYV F++ +A+KA A+ G +DGR I VD
Sbjct: 279 VVSARVITDRETGRSKGFGYVDFASPADAEKAHAEKQGAFIDGRQIKVD 327
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 3 ADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATII-----MDKGKNRSKGYG 57
AD +FG VT F F ++S+ F A I D+ R KG+G
Sbjct: 339 ADRAKKFGDVTSPESDTLFVGNLPFDADEDVVSEFFGSVAEIKSLRLPTDQESGRRKGFG 398
Query: 58 YVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
YV+F++ E+A+ A ++G+ ++GR +D P
Sbjct: 399 YVSFNSVEDAKSAFTQLSGQSINGRPCRLDYSTP 432
>gi|195471585|ref|XP_002088083.1| GE14328 [Drosophila yakuba]
gi|194174184|gb|EDW87795.1| GE14328 [Drosophila yakuba]
Length = 590
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNT 97
A +IMD RSKGYG++T+ ++A+KAL +NG L GR++ V NV NT
Sbjct: 359 AIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMKVGNVTERLDMNT 415
>gi|119358437|ref|YP_913081.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides DSM
266]
gi|119355786|gb|ABL66657.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides DSM
266]
Length = 90
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 41/86 (47%), Gaps = 27/86 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAFSQFGQV +A II DK RSKG+G+V
Sbjct: 17 LRDAFSQFGQVD---------------------------SANIITDKFSGRSKGFGFVDM 49
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD 87
++EA++A+ MN K L GR I V+
Sbjct: 50 PHDDEAREAIESMNDKDLKGRTIKVN 75
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G+VIFV R ++ A L R+
Sbjct: 222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G+VIFV R ++ A L R+
Sbjct: 222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|388518645|gb|AFK47384.1| unknown [Lotus japonicus]
Length = 307
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
A I+MD+ RS+G+G+VT S+E + A+A ++G+ LDGR I V
Sbjct: 250 ARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRV 294
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
A +I +K N+S+G+G+V ST E+ +KAL +G LDGRV+ V+ P
Sbjct: 149 AEVIYNKATNQSRGFGFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATP 198
>gi|423256816|ref|ZP_17237739.1| hypothetical protein HMPREF1055_00016 [Bacteroides fragilis
CL07T00C01]
gi|423266219|ref|ZP_17245222.1| hypothetical protein HMPREF1056_02909 [Bacteroides fragilis
CL07T12C05]
gi|387778292|gb|EIK40387.1| hypothetical protein HMPREF1055_00016 [Bacteroides fragilis
CL07T00C01]
gi|392701574|gb|EIY94732.1| hypothetical protein HMPREF1056_02909 [Bacteroides fragilis
CL07T12C05]
Length = 118
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ +A I+MD+ RSKG+G+V +EE A+A +N K +DG+ + V RP
Sbjct: 27 VISAKIVMDRETGRSKGFGFVEMPNDEEGNAAIAALNEKEIDGKTLAVSVARP 79
>gi|332030569|gb|EGI70257.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 657
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
+ +A ++M++G RSKG+G+V FS EEA KA+ +MNG+++ + ++V R+ +
Sbjct: 344 ITSAKVMMEEG--RSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYV--ALAQRKEDRK 399
Query: 99 APLARQSAQ 107
A LA Q Q
Sbjct: 400 AHLASQYMQ 408
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
SKGYG+V F TEE A K++ +NG LL+G+ ++V P +
Sbjct: 160 SKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGKFIPRK 200
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGK-LLDGRVIFV 86
+M K +S+G+G+V F A++A+ D+NGK + +G+ ++V
Sbjct: 245 VMIKDDGKSRGFGFVAFEDPNSAEQAVLDLNGKEIAEGKCMYV 287
>gi|325182450|emb|CCA16902.1| polyadenylatebinding protein putative [Albugo laibachii Nc14]
Length = 675
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++ D N S+G+G+V FST EEA A+A+MNGKL+ G+ ++V
Sbjct: 387 ITSARVMRDSTGN-SRGFGFVCFSTPEEAATAVAEMNGKLITGKPVYV 433
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 36 DSFLFAATIIMDKGKN----RSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
D+F I+ K N +SKGYGYV + T E A +A+ +NG L+ G +FV
Sbjct: 182 DTFSLFGNILSCKVANDPTGQSKGYGYVHYETAEAATEAINKINGMLIAGTEVFV 236
>gi|307165845|gb|EFN60208.1| Polyadenylate-binding protein 1 [Camponotus floridanus]
Length = 635
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
+ +A ++M++G RSKG+G+V FS EEA KA+ +MNG+++ + ++V R+ +
Sbjct: 322 ITSAKVMMEEG--RSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYV--ALAQRKEDRK 377
Query: 99 APLARQSAQ 107
A LA Q Q
Sbjct: 378 AHLASQYMQ 386
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
SKGYG+V F TEE A K++ +NG LL+G+ ++V P +
Sbjct: 138 SKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRK 178
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGK-LLDGRVIFV 86
+M K +S+G+G+V F + A++A+ ++NGK + +G+ ++V
Sbjct: 223 VMSKDDGKSRGFGFVAFEDPDAAEQAVLELNGKDISEGKCMYV 265
>gi|363807832|ref|NP_001242695.1| uncharacterized protein LOC100811977 [Glycine max]
gi|255644898|gb|ACU22949.1| unknown [Glycine max]
Length = 287
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGR 82
+ A II DK +SKGYG+VTF +E A++A AD N ++DGR
Sbjct: 64 ILEAVIITDKSTGKSKGYGFVTFCDQESARRACADPN-PIIDGR 106
>gi|219130188|ref|XP_002185253.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403432|gb|EEC43385.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 605
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 34/48 (70%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++ D RS+G+G+V +ST EE+ +A+ +MNGKL+ + IFV
Sbjct: 353 ITSARVMKDAKDGRSRGFGFVCYSTPEESTRAVNEMNGKLIANKPIFV 400
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ S GYGYV + T E A A+ ++G L+DG+ + V
Sbjct: 153 ILSCKVVTDREGGVSMGYGYVHYETAEAANAAIEKLDGMLIDGQEVQV 200
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G+VIFV R ++ A L R+
Sbjct: 222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|19920866|ref|NP_609095.1| CG11266, isoform B [Drosophila melanogaster]
gi|24582412|ref|NP_723243.1| CG11266, isoform A [Drosophila melanogaster]
gi|7297213|gb|AAF52478.1| CG11266, isoform A [Drosophila melanogaster]
gi|15292031|gb|AAK93284.1| LD35730p [Drosophila melanogaster]
gi|22945834|gb|AAN10614.1| CG11266, isoform B [Drosophila melanogaster]
gi|220946034|gb|ACL85560.1| CG11266-PA [synthetic construct]
gi|220955788|gb|ACL90437.1| CG11266-PA [synthetic construct]
Length = 594
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNT 97
A +IMD RSKGYG++T+ ++A+KAL +NG L GR++ V NV NT
Sbjct: 363 AIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMKVGNVTERLDMNT 419
>gi|221066816|ref|ZP_03542921.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
gi|220711839|gb|EED67207.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
Length = 83
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
+ +A +I D+ RS+G+G+V ST E+AQKA+ +N + L GR + V RP +
Sbjct: 29 VISADVISDRETGRSRGFGFVEMSTPEQAQKAIQTLNDQPLGGRAVGVALARPRK 83
>gi|348529271|ref|XP_003452137.1| PREDICTED: polyadenylate-binding protein 1-like [Oreochromis
niloticus]
Length = 635
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+GR ++V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGRQVYV 263
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV 170
>gi|119612220|gb|EAW91814.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_a [Homo
sapiens]
Length = 287
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 70 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 115
>gi|376316225|emb|CCF99622.1| RNA recognition motif-containing protein [uncultured
Flavobacteriia bacterium]
Length = 83
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
+A +I D+ RS+G+G+V +EEAQ AL M GK L+GR I + +P R
Sbjct: 29 SARVITDRETGRSRGFGFVEMPNQEEAQAALDGMEGKDLEGRPIRCNESQPRER 82
>gi|6911142|gb|AAF31402.1| putative glycine-rich RNA binding protein 1 [Catharanthus roseus]
Length = 137
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L++AFSQ+G+V E + II D+ RS+G+G+VTF
Sbjct: 24 LSEAFSQYGEVLE---------------------------SKIINDRETGRSRGFGFVTF 56
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
E+ + A+ MNG+ LDGR + V+ +
Sbjct: 57 GDEKSMKDAIEGMNGQTLDGRNVTVNEAQS 86
>gi|3342756|gb|AAC41383.1| RNA-binding protein AxRNBP [Ambystoma mexicanum]
Length = 144
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
A ++ D+ RS+G+G+VTF +A++AL MNG+ LDGR I VD
Sbjct: 36 AVVVKDRETGRSRGFGFVTFRNPSDAKEALHAMNGESLDGRQIRVD 81
>gi|123473695|ref|XP_001320034.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121902831|gb|EAY07811.1| hypothetical protein TVAG_312100 [Trichomonas vaginalis G3]
Length = 215
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 29/37 (78%)
Query: 51 NRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
NRSKGYG+V+F+ +E+AQKA+ MN LDGR I V+
Sbjct: 68 NRSKGYGFVSFALKEDAQKAIDSMNNTELDGRKIEVE 104
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G++IFV R ++ A L R+
Sbjct: 222 VMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|2267567|gb|AAB63581.1| glycine-rich RNA binding protein 1 [Pelargonium x hortorum]
gi|2267569|gb|AAB63582.1| glycine-rich RNA binding protein 2 [Pelargonium x hortorum]
Length = 166
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 27/86 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L AFSQ+G+V E + II D+ RS+G+G+VTF
Sbjct: 24 LEQAFSQYGEVVE---------------------------SKIINDRETGRSRGFGFVTF 56
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD 87
S E+ A+ MNG+ LDGR I V+
Sbjct: 57 SNEKSMNDAIEGMNGQNLDGRNITVN 82
>gi|356541091|ref|XP_003539016.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 207
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 5 AFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSF-----LFAATIIMDKGKNRSKGYGYV 59
F QF + D+ Y F + + +F + II D+ RS+G+G+V
Sbjct: 31 GFIQFSMASSDVEYRCFVGGLAWATDDQALERAFSQYGEIVETKIINDRETGRSRGFGFV 90
Query: 60 TFSTEEEAQKALADMNGKLLDGRVIFVD 87
TF++E+ + A+ MNG+ LDGR I V+
Sbjct: 91 TFASEQSMKDAIEGMNGQNLDGRNITVN 118
>gi|302673016|ref|XP_003026195.1| hypothetical protein SCHCODRAFT_45556 [Schizophyllum commune H4-8]
gi|300099876|gb|EFI91292.1| hypothetical protein SCHCODRAFT_45556 [Schizophyllum commune H4-8]
Length = 218
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN-VRPSRRYNTD- 98
+A ++MD+ S+G+GYV F+T E+A+KA +M+G LDGR I +P + D
Sbjct: 31 SAIVMMDRQTGNSRGFGYVHFATHEQAKKAKEEMDGYELDGRNIRTGTATKPQPKGAHDP 90
Query: 99 APLARQSAQSPEE 111
+ ARQ P E
Sbjct: 91 SSRARQFGDKPSE 103
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 51 NRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
R KG+GYV F E A+KA + G LDGR I +D +P
Sbjct: 143 GRPKGFGYVEFEDIEGAKKAYEALAGAELDGRNIRLDYSQP 183
>gi|302926643|ref|XP_003054335.1| hypothetical protein NECHADRAFT_74951 [Nectria haematococca mpVI
77-13-4]
gi|256735276|gb|EEU48622.1| hypothetical protein NECHADRAFT_74951 [Nectria haematococca mpVI
77-13-4]
Length = 178
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89
A ++ D+ RS+G+G+V ++ E +AQKA+A MN DGR I VD
Sbjct: 34 AVVVKDRDTGRSRGFGFVRYTQEGDAQKAIATMNNVEFDGRTIRVDKA 81
>gi|432915990|ref|XP_004079241.1| PREDICTED: cold-inducible RNA-binding protein-like [Oryzias
latipes]
Length = 174
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+I DK RS+G+G+V + E+A+ AL MNGK LDGR I VD
Sbjct: 36 VIRDKETGRSRGFGFVKYDNVEDAKDALDAMNGKTLDGRAIRVD 79
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G++IFV R ++ A L R+
Sbjct: 222 VMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|340546033|gb|AEK51815.1| cytoplasmic poly(A) binding protein 1 [Ichthyophis bannanicus]
Length = 177
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V+F E+A KA+ +MNGK ++G+++FV R ++ A L R+
Sbjct: 119 VMTDSTGKSKGFGFVSFEKHEDANKAVEEMNGKDVNGKMVFVG--RAQKKVERQAELKRK 176
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
+ + ++ D+ N SKGY +V F T++ A +A+ MNG LL+ R +FV R R +
Sbjct: 22 ILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVG--RFKSRKERE 77
Query: 99 APLARQSAQ 107
A L ++ +
Sbjct: 78 AELGARAKE 86
>gi|223647416|gb|ACN10466.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 193
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+I DK RS+G+G+V + E+A+ AL MNGK +DGR I VD
Sbjct: 36 VIRDKETGRSRGFGFVKYDNAEDAKDALEGMNGKSVDGRTIRVD 79
>gi|62857699|ref|NP_001017228.1| cold-inducible RNA-binding protein [Xenopus (Silurana)
tropicalis]
gi|123910273|sp|Q28IQ9.1|CIRBP_XENTR RecName: Full=Cold-inducible RNA-binding protein; AltName:
Full=Glycine-rich RNA-binding protein CIRP
gi|89268649|emb|CAJ83306.1| cold inducible RNA binding protein [Xenopus (Silurana)
tropicalis]
Length = 166
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
++ D+ RS+G+G+VTF E+A+ A+ MNGK +DGR I VD S
Sbjct: 37 VVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQAGKS 85
>gi|423196273|ref|ZP_17182856.1| hypothetical protein HMPREF1171_00888 [Aeromonas hydrophila SSU]
gi|404632497|gb|EKB29102.1| hypothetical protein HMPREF1171_00888 [Aeromonas hydrophila SSU]
Length = 92
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLAR 103
II+D+ +SKG+G++ EA+KA+A ++G + GR I V+ +P TDAP R
Sbjct: 32 IIIDRDTGQSKGFGFIEMPVNGEAEKAIAGLHGTEIGGRTITVNQAKP----KTDAPRGR 87
>gi|302036839|ref|YP_003797161.1| RNA-binding protein [Candidatus Nitrospira defluvii]
gi|190343253|gb|ACE75641.1| RNA-binding protein [Candidatus Nitrospira defluvii]
gi|300604903|emb|CBK41236.1| RNA-binding protein [Candidatus Nitrospira defluvii]
Length = 107
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+A +I DK +S+G+G+V ST EEA+ A+ +NG +DGR + V+ +P
Sbjct: 31 SARVITDKFTGQSRGFGFVEMSTAEEAKAAITALNGSDMDGRQLTVNEAKP 81
>gi|6911146|gb|AAF31404.1|AF200323_1 putative glycine-rich RNA-binding protein 2 [Catharanthus roseus]
Length = 160
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L++AFSQ+G+V E + +I D+ RS+G+G+VTF
Sbjct: 24 LSEAFSQYGEVLE---------------------------SKVINDRETGRSRGFGFVTF 56
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
E+ + A+ MNG+ LDGR I V+ +
Sbjct: 57 GDEKSMKDAIVGMNGQTLDGRNITVNEAQS 86
>gi|431915005|gb|ELK15824.1| Heterogeneous nuclear ribonucleoprotein G [Pteropus alecto]
Length = 390
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 32/46 (69%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89
++ D+ NRS+G+ ++TF E+A+ A DMNGK LDG++I V+
Sbjct: 39 LMKDRETNRSRGFAFITFENPEDAKDATKDMNGKSLDGKLIKVEQA 84
>gi|417396333|gb|JAA45200.1| Putative mrna cleavage and polyadenylation factor i complex
subunit rna15 [Desmodus rotundus]
Length = 158
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
++ D+ RS+G+G++TF+ E A A+ MNG+ LDGR I VD+ S R
Sbjct: 37 VVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSAR 87
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G++IFV R ++ A L R+
Sbjct: 222 VMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|117619969|ref|YP_856326.1| RNA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
gi|117561376|gb|ABK38324.1| RNA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 95
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLAR 103
II+D+ +SKG+G++ EA+KA+A ++G + GR I V+ +P TDAP R
Sbjct: 35 IIIDRDTGQSKGFGFIEMPVNGEAEKAIAGLHGTEIGGRTITVNQAKPK----TDAPRGR 90
>gi|426257071|ref|XP_004022158.1| PREDICTED: putative RNA-binding protein 3 isoform 1 [Ovis aries]
gi|426257073|ref|XP_004022159.1| PREDICTED: putative RNA-binding protein 3 isoform 2 [Ovis aries]
gi|426257075|ref|XP_004022160.1| PREDICTED: putative RNA-binding protein 3 isoform 3 [Ovis aries]
gi|426257077|ref|XP_004022161.1| PREDICTED: putative RNA-binding protein 3 isoform 4 [Ovis aries]
gi|426257079|ref|XP_004022162.1| PREDICTED: putative RNA-binding protein 3 isoform 5 [Ovis aries]
Length = 160
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
++ D+ RS+G+G++TF+ E A A+ MNG+ LDGR I VD+ S R
Sbjct: 37 VVKDRETQRSRGFGFITFTNPEHASNAMRAMNGESLDGRQIRVDHAGKSAR 87
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G++IFV R ++ A L R+
Sbjct: 222 VMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G++IFV R ++ A L R+
Sbjct: 222 VMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|356513816|ref|XP_003525605.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 299
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV--RPSR 93
A ++ D+ RS+G+G+VT S+E + A+A ++G+ LDGR I V+ RPSR
Sbjct: 243 ARVVYDRETGRSRGFGFVTMSSETDMNDAIAALDGQSLDGRAIRVNVAQDRPSR 296
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 34/50 (68%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
A +I ++ +RS+G+G+VT ST EE +KA+ +G L+GRV+ V+ P
Sbjct: 146 AEVIYNRATDRSRGFGFVTMSTLEELKKAVEMFSGYELNGRVLTVNKAAP 195
>gi|342889186|gb|EGU88353.1| hypothetical protein FOXB_01152 [Fusarium oxysporum Fo5176]
Length = 170
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89
A ++ D+ RS+G+G+V ++ E +AQKA+A MN DGR I VD
Sbjct: 31 AVVVKDRDTGRSRGFGFVRYTQEGDAQKAIATMNNVEFDGRTIRVDKA 78
>gi|410924411|ref|XP_003975675.1| PREDICTED: cold-inducible RNA-binding protein-like [Takifugu
rubripes]
Length = 170
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 4/52 (7%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD----NVRP 91
+I DK RS+G+G+V + + E+A+ A+ MNGK LDGR I VD +RP
Sbjct: 36 VIRDKETGRSRGFGFVKYESVEDAKDAMTAMNGKSLDGRAIRVDEAGKGLRP 87
>gi|390602556|gb|EIN11949.1| RNA-binding domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 161
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 5/58 (8%)
Query: 30 HYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
HY I DS ++ D+ RS+G+G+VTFS+ EA A+A +N + LDGR I V+
Sbjct: 25 HYGQILDSI-----VMRDRDTGRSRGFGFVTFSSSAEADNAIASLNEQDLDGRRIRVN 77
>gi|348553582|ref|XP_003462605.1| PREDICTED: putative RNA-binding protein 3-like [Cavia porcellus]
Length = 159
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
++ D+ RS+G+G++TF+ E A A+ MNG+ LDGR I VD+ S R
Sbjct: 37 VVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSAR 87
>gi|224130158|ref|XP_002328668.1| predicted protein [Populus trichocarpa]
gi|222838844|gb|EEE77195.1| predicted protein [Populus trichocarpa]
Length = 142
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSRRY 95
IIMD+ RS+G+G+VT+++ EEA A+ M+G+ L GR + V+ RP R +
Sbjct: 71 IIMDRDTGRSRGFGFVTYTSSEEASSAIQAMDGQDLHGRRVRVNYATERPQRTF 124
>gi|403305068|ref|XP_003943097.1| PREDICTED: polyadenylate-binding protein 1 [Saimiri boliviensis
boliviensis]
Length = 803
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 292 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 337
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 487 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 532
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 389 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 430
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G++IFV R ++ A L R+
Sbjct: 222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G++IFV R ++ A L R+
Sbjct: 222 VMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|242015973|ref|XP_002428613.1| RNA-binding region-containing protein, putative [Pediculus humanus
corporis]
gi|212513276|gb|EEB15875.1| RNA-binding region-containing protein, putative [Pediculus humanus
corporis]
Length = 593
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 90
+IMD RSKGYG++TF + ++A+KAL +NG L GR + V NV+
Sbjct: 296 LIMDPETGRSKGYGFITFHSADDAKKALEQLNGFELAGRPMKVGNVQ 342
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G++IFV R ++ A L R+
Sbjct: 222 VMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|20975276|dbj|BAB92955.1| cold inducible RNA-binding protein alpha [Hyla japonica]
Length = 162
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
++ D+ RS+G+G+VTF E+A+ A+ MNGK +DGR I VD S
Sbjct: 38 VVKDRETKRSRGFGFVTFENPEDAKDAMEAMNGKSVDGRQIRVDQAGKS 86
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G++IFV R ++ A L R+
Sbjct: 222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|313147463|ref|ZP_07809656.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|423277773|ref|ZP_17256687.1| hypothetical protein HMPREF1203_00904 [Bacteroides fragilis HMW
610]
gi|424663907|ref|ZP_18100944.1| hypothetical protein HMPREF1205_04293 [Bacteroides fragilis HMW
616]
gi|313136230|gb|EFR53590.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|404577597|gb|EKA82335.1| hypothetical protein HMPREF1205_04293 [Bacteroides fragilis HMW
616]
gi|404586970|gb|EKA91529.1| hypothetical protein HMPREF1203_00904 [Bacteroides fragilis HMW
610]
Length = 122
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ +A I+MD+ RSKG+G+V +EE A+A +N K +DG+ + V RP
Sbjct: 27 VISAKIVMDRETGRSKGFGFVEMPNDEEGNAAIAALNEKEIDGKTLSVSVARP 79
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G++IFV R ++ A L R+
Sbjct: 222 VMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|346979496|gb|EGY22948.1| gar2 [Verticillium dahliae VdLs.17]
Length = 485
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 14/87 (16%)
Query: 12 VTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKAL 71
V +D++Y F FP L +A +I D+ RS+G+GYV FS E A+ AL
Sbjct: 237 VNDDILYQAFSE---FP---------NLTSARVITDREGGRSRGFGYVDFSDAESAKAAL 284
Query: 72 ADMNGKLLDGRVIFVD--NVRPSRRYN 96
NG L+GR + +D RP R N
Sbjct: 285 EAKNGTELEGRNMNIDFSGKRPERSDN 311
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 29 LHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL----DGRVI 84
+H F + + + + D KG+GYV+FS+ ++A+KAL+++NG+ L GR +
Sbjct: 348 VHAFFATVAEPTSVRLPTDPESGNLKGFGYVSFSSIDDAKKALSELNGQYLGEGSSGRAV 407
Query: 85 FVD 87
+D
Sbjct: 408 RLD 410
>gi|225463887|ref|XP_002264022.1| PREDICTED: uncharacterized protein LOC100256416 isoform 1 [Vitis
vinifera]
gi|359493015|ref|XP_003634493.1| PREDICTED: uncharacterized protein LOC100256416 isoform 2 [Vitis
vinifera]
Length = 207
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 36/54 (66%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
L A +++DK RS+G+G+V+F ++ + A+ +M+G LDGR I VD +P+
Sbjct: 33 LVEAKVVVDKFSGRSRGFGFVSFDDKQAMEDAIKEMHGMDLDGRSITVDKAQPN 86
>gi|6996560|emb|CAB75429.1| oligouridylate binding protein [Nicotiana plumbaginifolia]
Length = 406
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 10/64 (15%)
Query: 34 ISDSFLFA----------ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRV 83
++D+ LFA A ++ D+ RS+G+G+V+F ++EAQ A+ D+NGK L R
Sbjct: 145 VTDATLFACFSVYTSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDLNGKWLGSRQ 204
Query: 84 IFVD 87
I +
Sbjct: 205 IRCN 208
>gi|431893576|gb|ELK03439.1| Putative RNA-binding protein 3 [Pteropus alecto]
Length = 213
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
++ D+ RS+G+G++TF+ E A A+ MNG+ LDGR I VD+ S R
Sbjct: 94 VVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSAR 144
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G++IFV R ++ A L R+
Sbjct: 222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|359806184|ref|NP_001240946.1| uncharacterized protein LOC100812934 [Glycine max]
gi|255639723|gb|ACU20155.1| unknown [Glycine max]
Length = 279
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
+I DK RS+G+G+VT S+ EEA+ A NG LDGR + V++ P R N AP
Sbjct: 120 VIYDKTTGRSRGFGFVTMSSVEEAEAAAKQFNGYELDGRSLRVNSGPPPAR-NESAP 175
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSR 93
+ A +I D+ RS+G+G+VTF + +E + A+ ++G L+GR I V + +P R
Sbjct: 222 VLEARVIYDRESGRSRGFGFVTFGSPDEVKSAIQSLDGVDLNGRAIRVSLADSKPKR 278
>gi|410988519|ref|XP_004000531.1| PREDICTED: putative RNA-binding protein 3 [Felis catus]
Length = 160
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
++ D+ RS+G+G++TF+ E A A+ MNG+ LDGR I VD+ S R
Sbjct: 37 VVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSAR 87
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G++IFV R ++ A L R+
Sbjct: 222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|110597824|ref|ZP_01386107.1| RNA-binding region RNP-1 (RNA recognition motif) [Chlorobium
ferrooxidans DSM 13031]
gi|110340549|gb|EAT59032.1| RNA-binding region RNP-1 (RNA recognition motif) [Chlorobium
ferrooxidans DSM 13031]
Length = 90
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+A++I DK RSKG+G+V + + EA A+AD+N L+GR I V+ +P
Sbjct: 29 SASVINDKFTGRSKGFGFVEMANDAEAASAIADLNDSDLNGRTIKVNEAKP 79
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G++IFV R ++ A L R+
Sbjct: 222 VMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|397502367|ref|XP_003821832.1| PREDICTED: polyadenylate-binding protein 1 [Pan paniscus]
Length = 656
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 145 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 190
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 340 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 385
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 242 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 283
>gi|160899081|ref|YP_001564663.1| RNP-1 like RNA-binding protein [Delftia acidovorans SPH-1]
gi|333914782|ref|YP_004488514.1| RNP-1 like RNA-binding protein [Delftia sp. Cs1-4]
gi|160364665|gb|ABX36278.1| RNP-1 like RNA-binding protein [Delftia acidovorans SPH-1]
gi|333744982|gb|AEF90159.1| RNP-1 like RNA-binding protein [Delftia sp. Cs1-4]
Length = 115
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 35/53 (66%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ +A ++MD+ RSKG+G+V ++ E AQ A+ ++G +DGR I V+ RP
Sbjct: 29 VASAKVMMDRETGRSKGFGFVEMASAEVAQAAITGLHGMSVDGRSIVVNLARP 81
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G++IFV R ++ A L R+
Sbjct: 222 VMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|71896197|ref|NP_001026768.1| polyadenylate-binding protein 1 [Gallus gallus]
gi|53130422|emb|CAG31540.1| hypothetical protein RCJMB04_7l20 [Gallus gallus]
Length = 637
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V R +R L R+
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG--RAQKRVERQTELKRK 279
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>gi|89902981|ref|YP_525452.1| RNA-binding region RNP-1 [Rhodoferax ferrireducens T118]
gi|89347718|gb|ABD71921.1| RNA-binding region RNP-1 [Rhodoferax ferrireducens T118]
Length = 140
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 29 LHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 88
L + + +A ++M++ RSKG+G+V ++ EAQ A+ MNG+ GR + V+
Sbjct: 19 LQQAFAAHGTVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQQYGGRGLVVNE 78
Query: 89 VRP 91
RP
Sbjct: 79 ARP 81
>gi|302810024|ref|XP_002986704.1| hypothetical protein SELMODRAFT_182522 [Selaginella moellendorffii]
gi|300145592|gb|EFJ12267.1| hypothetical protein SELMODRAFT_182522 [Selaginella moellendorffii]
Length = 730
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+I DK NRSKGYGYV F+ EEA +A+ +++ + GR++ V
Sbjct: 256 LICDKETNRSKGYGYVGFTLPEEATRAMTELDNSIFQGRLLHV 298
Score = 34.7 bits (78), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 49 GKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
G + S G+G+V F + + A++ +M G +LDG + ++PSR + + P
Sbjct: 568 GASLSMGFGFVEFDSADTAERVCKEMQGSVLDGHALV---LQPSRAGDDEKP 616
>gi|302815033|ref|XP_002989199.1| hypothetical protein SELMODRAFT_37572 [Selaginella
moellendorffii]
gi|300143099|gb|EFJ09793.1| hypothetical protein SELMODRAFT_37572 [Selaginella
moellendorffii]
Length = 166
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 35/53 (66%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ A +I+D+G RS+G+G+VTF+ + +A+ ++ K LDGRV+ V+ P
Sbjct: 29 ILEAKVIIDRGSGRSRGFGFVTFADQRAMDEAIDRLHNKELDGRVVTVNKALP 81
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G++IFV R ++ A L R+
Sbjct: 222 VMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|392586723|gb|EIW76059.1| RNA-binding domain-containing protein [Coniophora puteana
RWD-64-598 SS2]
Length = 333
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 24/89 (26%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L FS+FG+VT+ L + + KS P ++GK R GY +V +
Sbjct: 71 LIQVFSKFGKVTK-LDFLFHKSGP---------------------NRGKPR--GYAFVEY 106
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVR 90
+ E +A+KA+A+ NGKLL GR + V + +
Sbjct: 107 AEEADARKAVANANGKLLRGRKLMVSHAQ 135
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V+F E+A +A+ DMNGK ++G+++FV R ++ A L R+
Sbjct: 222 VMTDPSGKSKGFGFVSFEKHEDANQAVEDMNGKDINGKMVFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 37/48 (77%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A +++++G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEEG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T++ A +A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 170
>gi|118788821|ref|XP_317010.3| AGAP008433-PA [Anopheles gambiae str. PEST]
gi|116122929|gb|EAA12873.4| AGAP008433-PA [Anopheles gambiae str. PEST]
Length = 526
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89
+IMD RSKGYG++TF ++A+KAL +NG L GR + V NV
Sbjct: 300 LIMDADTGRSKGYGFITFHNADDAKKALEQLNGFELAGRPMKVGNV 345
>gi|157108428|ref|XP_001650224.1| splicing factor [Aedes aegypti]
gi|108879330|gb|EAT43555.1| AAEL005046-PA [Aedes aegypti]
Length = 544
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89
+IMD RSKGYG++TF ++A+KAL +NG L GR + V NV
Sbjct: 318 LIMDSDTGRSKGYGFITFHNADDAKKALEQLNGFELAGRPMKVGNV 363
>gi|115459296|ref|NP_001053248.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|32490269|emb|CAE05558.1| OSJNBb0116K07.11 [Oryza sativa Japonica Group]
gi|113564819|dbj|BAF15162.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|215695125|dbj|BAG90316.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 659
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 33 LISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
L S+ + IM SKG G+V FST EEA +AL +MNGK++ G+ ++V
Sbjct: 340 LFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYV 393
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 52 RSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN-VRPSRRYNT 97
+SKG+G+V + E AQ A+ +NG L++ + ++V +R R N+
Sbjct: 165 QSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENS 211
>gi|74199920|dbj|BAE20776.1| unnamed protein product [Mus musculus]
Length = 266
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+G +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 217 ILSVKVMTDEG-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 263
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKG+G+V F TEE A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVSDE--NGSKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFV 170
>gi|340054910|emb|CCC49218.1| putative RNA-binding protein [Trypanosoma vivax Y486]
Length = 592
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 13/86 (15%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV----DNVRPS-- 92
+ +A +I D N S+GYG+V TEE+A + + +N + LDGR + + PS
Sbjct: 208 IISAKVIHDSTTNESRGYGFVMLETEEQAARCVRSLNNRRLDGRTLICRFAHERAMPSFA 267
Query: 93 ------RRYNTDAPLARQSAQSPEEN 112
RR + + PL A+ PE N
Sbjct: 268 CAGCAQRRGSNNTPLIPSEAR-PEVN 292
>gi|194386544|dbj|BAG61082.1| unnamed protein product [Homo sapiens]
Length = 604
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 36 DSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
D L + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 90 DPSLRKSGVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 138
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 190 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 231
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 288 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 333
>gi|357475273|ref|XP_003607922.1| Poly(A)-binding protein [Medicago truncatula]
gi|355508977|gb|AES90119.1| Poly(A)-binding protein [Medicago truncatula]
Length = 654
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 29 LHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
LH S + + + +D G +SKGYG+V F TEE AQKA+ +NG LL+ + ++V
Sbjct: 138 LHDTFSSFGNILSCKVAVD-GSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYV 194
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 33 LISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
L S + +M S+G G+V FST EEA +AL +MNGK++ + ++V
Sbjct: 335 LFSSYGTITSCKVMRDPNGVSRGSGFVAFSTPEEASRALLEMNGKMVASKPLYV 388
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 29/47 (61%)
Query: 40 FAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ ++M G +SK +G+V F + ++A +A+ +NGK +D + +V
Sbjct: 239 ITSAVVMRDGDGKSKCFGFVNFESTDDAARAVEALNGKKIDDKEWYV 285
>gi|149744489|ref|XP_001493789.1| PREDICTED: putative RNA-binding protein 3-like isoform 1 [Equus
caballus]
Length = 156
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
++ D+ RS+G+G++TF+ E A A+ MNG+ LDGR I VD+ S R
Sbjct: 37 VVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSAR 87
>gi|148702008|gb|EDL33955.1| mCG116386, isoform CRA_e [Mus musculus]
Length = 179
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89
++ D+ RS+G+G++TF+ E A A+ MNG+ LDGR I VD+
Sbjct: 62 VVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHA 107
>gi|145233965|ref|XP_001400355.1| glycine-rich RNA-binding protein 2 [Aspergillus niger CBS 513.88]
gi|134057294|emb|CAK37908.1| unnamed protein product [Aspergillus niger]
gi|350635078|gb|EHA23440.1| hypothetical protein ASPNIDRAFT_197860 [Aspergillus niger ATCC
1015]
Length = 116
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
A ++ D +RS+G+G+V F+++ EA A+ MN + DGRVI VD SR
Sbjct: 31 AIVVKDHDTHRSRGFGFVRFASDVEADAAMNAMNNQEFDGRVIRVDKASESR 82
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G++IFV R ++ A L R+
Sbjct: 222 VMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|281353659|gb|EFB29243.1| hypothetical protein PANDA_006181 [Ailuropoda melanoleuca]
Length = 148
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
++ D+ RS+G+G++TF+ E A A+ MNG+ LDGR I VD+ S R
Sbjct: 37 VVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSAR 87
>gi|255580168|ref|XP_002530915.1| RNA binding protein, putative [Ricinus communis]
gi|223529509|gb|EEF31464.1| RNA binding protein, putative [Ricinus communis]
Length = 354
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
A ++ D+ SKG+G+V + + E+A+K + M+GK LDG VIF + RP
Sbjct: 81 ARVVTDRVSGYSKGFGFVRYGSLEDAEKGIEGMDGKFLDGWVIFAEYARP 130
>gi|218195166|gb|EEC77593.1| hypothetical protein OsI_16552 [Oryza sativa Indica Group]
Length = 659
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 33 LISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
L S+ + IM SKG G+V FST EEA +AL +MNGK++ G+ ++V
Sbjct: 340 LFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYV 393
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 52 RSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN-VRPSRRYNT 97
+SKG+G+V + E AQ A+ +NG L++ + ++V +R R N+
Sbjct: 165 QSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENS 211
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G++IFV R ++ A L R+
Sbjct: 222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|389632187|ref|XP_003713746.1| hypothetical protein MGG_04816 [Magnaporthe oryzae 70-15]
gi|351646079|gb|EHA53939.1| hypothetical protein MGG_04816 [Magnaporthe oryzae 70-15]
Length = 236
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89
A ++ D+ RS+G+G+V ++ E++AQKA+ MN DGR I VD
Sbjct: 86 AVVVKDRDTGRSRGFGFVRYTNEDDAQKAITAMNNVEFDGRTIRVDKA 133
>gi|326917956|ref|XP_003205259.1| PREDICTED: polyadenylate-binding protein 1-like [Meleagris
gallopavo]
Length = 652
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 140 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 185
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 237 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 278
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 335 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 380
>gi|20257681|gb|AAM16006.1| glycine-rich RNA binding protein [Zea mays]
Length = 148
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ + II+D+ RS+G+G+VTFS + A+ MNGK LDGR I V+
Sbjct: 37 VLESKIILDRETQRSRGFGFVTFSXXXAMRSAIEGMNGKELDGRNITVN 85
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G++IFV R ++ A L R+
Sbjct: 222 VMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|388858327|emb|CCF48115.1| related to glycine-rich RNA-binding protein [Ustilago hordei]
Length = 193
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 29/93 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
LA AFS +GQ+T+ +V + D+ RS+G+G+VTF
Sbjct: 19 LAHAFSAYGQLTDYIV---------------------------MKDRETGRSRGFGFVTF 51
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD--NVRPS 92
+T+ EA A+A +N + LDGR I V+ N RP+
Sbjct: 52 ATQGEADAAIAALNEQELDGRRIRVNMANSRPA 84
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G++IFV R ++ A L R+
Sbjct: 222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|351695842|gb|EHA98760.1| Polyadenylate-binding protein 1 [Heterocephalus glaber]
Length = 709
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 215 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 260
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 312 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 353
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G++IFV R ++ A L R+
Sbjct: 222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|312282683|dbj|BAJ34207.1| unnamed protein product [Thellungiella halophila]
Length = 166
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ II D+ RS+G+G+VTF E+ + A+ +MNGK LDGR I V+
Sbjct: 36 SKIINDRETGRSRGFGFVTFKDEKSMRDAIEEMNGKELDGRSITVN 81
>gi|224124176|ref|XP_002319264.1| predicted protein [Populus trichocarpa]
gi|118487492|gb|ABK95573.1| unknown [Populus trichocarpa]
gi|222857640|gb|EEE95187.1| predicted protein [Populus trichocarpa]
Length = 149
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 27/92 (29%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L +AFS+FG+V + A ++ D+ SKG+G+V +
Sbjct: 70 LQEAFSKFGEVVQ---------------------------AKVVTDRTSGYSKGFGFVRY 102
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
T E+A + + M+G+ LDG VIF + RP +
Sbjct: 103 GTLEDAAEGIKGMDGQFLDGWVIFAEYARPKQ 134
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G++IFV R ++ A L R+
Sbjct: 222 VMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|449268618|gb|EMC79472.1| Polyadenylate-binding protein 4 [Columba livia]
Length = 630
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V+F E+A KA+ +MNGK ++G+++FV R ++ A L R+
Sbjct: 222 VMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T++ A +A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 170
>gi|82623423|gb|ABB87126.1| putative glycine-rich RNA binding protein-like [Solanum
tuberosum]
Length = 178
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 27/86 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L++AFSQ+G+V E + II D+ RS+G+G+VTF
Sbjct: 22 LSEAFSQYGEVVE---------------------------SKIINDRETGRSRGFGFVTF 54
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD 87
E+ + A+ MNG+ LDGR I V+
Sbjct: 55 KDEQAMRDAIEGMNGQDLDGRNITVN 80
>gi|409050086|gb|EKM59563.1| hypothetical protein PHACADRAFT_250155 [Phanerochaete carnosa
HHB-10118-sp]
Length = 277
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 32/44 (72%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
I+ D+ +RS+G+G++T ST EEA + + ++NG L+GR I VD
Sbjct: 107 IVYDQRSDRSRGFGFITMSTVEEASRCIKELNGVELNGRRIRVD 150
>gi|390465724|ref|XP_002750686.2| PREDICTED: polyadenylate-binding protein 4 [Callithrix jacchus]
Length = 656
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G++IFV R ++ A L R+
Sbjct: 222 VMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|388493798|gb|AFK34965.1| unknown [Medicago truncatula]
Length = 185
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLAR 103
++ D+ SKG+GYV ++T E+A K + M+GK L+G ++F + RP R N +A
Sbjct: 75 VVADRVSGYSKGFGYVRYATSEDAAKGIQGMDGKFLEGWIVFAEYARP--RINA---IAS 129
Query: 104 QSAQSP 109
Q+ P
Sbjct: 130 QTHTEP 135
>gi|403169799|ref|XP_003329214.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168425|gb|EFP84795.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 804
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M K SKG+G+V FS+ +EA KA+A+MNGK+L + ++V
Sbjct: 488 VMKDEKGTSKGFGFVCFSSPDEATKAVAEMNGKMLGSKPLYV 529
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
SKGYG+V + T E A+ A+ +NG L+ +V+FV P R
Sbjct: 300 SKGYGFVHYVTGESAEAAIKGVNGMQLNDKVVFVGIHVPRR 340
>gi|350538645|ref|NP_001233728.1| RNA-binding motif 3 [Cricetulus griseus]
gi|189170130|gb|ACD80090.1| RNA-binding motif 3 [Cricetulus griseus]
Length = 156
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
++ D+ RS+G+G++TF+ E A A+ MNG+ LDGR I VD+ S R
Sbjct: 37 VVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSAR 87
>gi|301115672|ref|XP_002905565.1| RNA binding protein, putative [Phytophthora infestans T30-4]
gi|262110354|gb|EEY68406.1| RNA binding protein, putative [Phytophthora infestans T30-4]
Length = 322
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 27 FPLHYFLISDSFLFAATII----MDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGR 82
+ + + + D A T++ ++ RSKG G V ++TE+EA KA+A++N L+GR
Sbjct: 172 WNVKWQELKDHMKTAGTVVHADVLELANGRSKGCGLVEYATEDEAAKAIAELNNTELEGR 231
Query: 83 VIFV 86
+IFV
Sbjct: 232 LIFV 235
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
AT++ G RSKG G VT++TEE AQ A+A +N L GR IFV R ++ T P
Sbjct: 103 ATVLEWNG--RSKGCGIVTYATEEAAQNAIATLNDTELGGRKIFVREDREAQPTATTKP 159
>gi|170071297|ref|XP_001869868.1| splicing factor [Culex quinquefasciatus]
gi|167867202|gb|EDS30585.1| splicing factor [Culex quinquefasciatus]
Length = 524
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89
+IMD RSKGYG++TF ++A+KAL +NG L GR + V NV
Sbjct: 298 LIMDSDTGRSKGYGFITFHNADDAKKALEQLNGFELAGRPMKVGNV 343
>gi|154416377|ref|XP_001581211.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121915436|gb|EAY20225.1| hypothetical protein TVAG_021720 [Trichomonas vaginalis G3]
Length = 202
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 29/36 (80%)
Query: 52 RSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+SKG+G++ ++T+EEA KA+A+MN K +GR I VD
Sbjct: 84 KSKGFGFIEYATQEEADKAIAEMNKKEFEGRTIVVD 119
>gi|20257709|gb|AAM16020.1| glycine-rich RNA binding protein [Zea mays]
Length = 155
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ + II+D+ RS+G+G+VTFS + A+ MNGK LDGR I V+ +
Sbjct: 43 VLESKIILDRETQRSRGFGFVTFSXXXAMRSAIEGMNGKELDGRNITVNEAQS 95
>gi|189339246|ref|NP_446148.1| putative RNA-binding protein 3 [Rattus norvegicus]
gi|149028410|gb|EDL83795.1| RNA binding motif protein 3, isoform CRA_a [Rattus norvegicus]
gi|149028411|gb|EDL83796.1| RNA binding motif protein 3, isoform CRA_a [Rattus norvegicus]
Length = 156
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
++ D+ RS+G+G++TF+ E A A+ MNG+ LDGR I VD+ S R
Sbjct: 37 VVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSAR 87
>gi|302811189|ref|XP_002987284.1| hypothetical protein SELMODRAFT_37571 [Selaginella
moellendorffii]
gi|300144919|gb|EFJ11599.1| hypothetical protein SELMODRAFT_37571 [Selaginella
moellendorffii]
Length = 163
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 35/53 (66%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ A +I+D+G RS+G+G+VTF+ + +A+ ++ K LDGRV+ V+ P
Sbjct: 29 ILEAKVIIDRGSGRSRGFGFVTFADQRAMDEAIDRLHNKELDGRVVTVNKALP 81
>gi|26354649|dbj|BAC40951.1| unnamed protein product [Mus musculus]
Length = 636
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIKKMNGMLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>gi|325179817|emb|CCA14220.1| RNA binding protein putative [Albugo laibachii Nc14]
Length = 360
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/61 (49%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDA-PLA 102
+IM+ G RSKG G VT++TE EAQ A+ +N LDGR IF VR R N A P A
Sbjct: 100 VIMEVG-GRSKGCGIVTYATESEAQNAIETLNDTELDGRKIF---VREDREENASAQPRA 155
Query: 103 R 103
+
Sbjct: 156 K 156
Score = 38.5 bits (88), Expect = 0.47, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 90
++++ SKG G V FST +EAQ A+ +N L+GR IFV R
Sbjct: 189 VLEEAGGWSKGCGLVEFSTPDEAQNAIDMLNDTELEGRNIFVREDR 234
>gi|71993209|ref|NP_001021710.1| Protein PAB-1, isoform b [Caenorhabditis elegans]
gi|38422742|emb|CAE54916.1| Protein PAB-1, isoform b [Caenorhabditis elegans]
Length = 583
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%)
Query: 53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
SKGYG+V F TEE AQ A+ +NG LL G+ +FV +P + N +
Sbjct: 96 SKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRE 141
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
+ +A ++ D+ RSKG+G+V F EEA A+ +MN K++ + ++V + R+ +
Sbjct: 280 ITSAKVMTDE-NGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQ--RKEDRR 336
Query: 99 APLARQSAQ 107
A LA Q Q
Sbjct: 337 AQLASQYMQ 345
Score = 34.7 bits (78), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 12/111 (10%)
Query: 8 QFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFA-------ATIIMDKGKNRSKGYGYVT 60
+ G+ + Y K+ F HY + LFA ++ +GK SKG+G+V
Sbjct: 141 ELGETAKQFTNVYVKN---FGDHYNKETLEKLFAKFGNITSCEVMTVEGK--SKGFGFVA 195
Query: 61 FSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQSAQSPEE 111
F+ EEA+ A+ ++ ++G + + R ++ A L ++ Q E
Sbjct: 196 FANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAE 246
>gi|13435438|gb|AAH04587.1| Pabpc1 protein [Mus musculus]
Length = 527
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 16 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 61
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 113 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 154
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 211 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 256
>gi|444518692|gb|ELV12325.1| Putative RNA-binding protein 3 [Tupaia chinensis]
Length = 154
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
++ D+ RS+G+G++TF+ E A A+ MNG+ LDGR I VD+ S R
Sbjct: 37 VVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSAR 87
>gi|395512247|ref|XP_003760354.1| PREDICTED: polyadenylate-binding protein 1 [Sarcophilus harrisii]
Length = 654
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 145 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 190
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 340 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 385
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 242 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 283
>gi|296087572|emb|CBI34828.3| unnamed protein product [Vitis vinifera]
Length = 272
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSR 93
A ++ D+ RS+G+G+VT S+E E A+A ++G+ LDGR I V+ RP R
Sbjct: 216 ARVVYDRDTQRSRGFGFVTMSSETELNDAIAALDGQSLDGRAIRVNVAEERPRR 269
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
A +I ++ ++S+G+G++T ST EEA+KA+ N L+GR + V+ P
Sbjct: 122 AEVIYNRETDQSRGFGFITMSTVEEAEKAVEMFNRYDLNGRFLTVNKAAP 171
>gi|126320658|ref|XP_001364500.1| PREDICTED: polyadenylate-binding protein 4-like [Monodelphis
domestica]
Length = 630
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V+F E+A KA+ +MNGK ++G+++FV R ++ A L R+
Sbjct: 222 VMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ +EA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYV 365
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T++ A +A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 170
>gi|3550467|emb|CAA06469.1| cp31AHv protein [Hordeum vulgare subsp. vulgare]
Length = 294
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSRRY 95
A ++ D+ RS+G+G+VT +++EE A+A ++G+ L+GR + V+ RP RR+
Sbjct: 239 AKVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEERPPRRF 294
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 30/41 (73%), Gaps = 5/41 (12%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALA-----DMNGKLL 79
+I ++ ++S+G+G+VT ST EEA+KA+ D+NG+LL
Sbjct: 147 VIYNRETDQSRGFGFVTMSTIEEAEKAVEMFHRYDVNGRLL 187
>gi|20257699|gb|AAM16015.1| glycine-rich RNA binding protein [Zea mays]
gi|20257705|gb|AAM16018.1| glycine-rich RNA binding protein [Zea mays]
Length = 155
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ + II+D+ RS+G+G+VTFS + A+ MNGK LDGR I V+ +
Sbjct: 43 VLESKIILDRETQRSRGFGFVTFSXXXAMRSAIEGMNGKELDGRNITVNEAQS 95
>gi|20257679|gb|AAM16005.1| glycine-rich RNA binding protein [Zea mays]
Length = 154
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ + II+D+ RS+G+G+VTFS + A+ MNGK LDGR I V+ +
Sbjct: 43 VLESKIILDRETQRSRGFGFVTFSXXXAMRSAIEGMNGKELDGRNITVNEAQS 95
>gi|355745175|gb|EHH49800.1| hypothetical protein EGM_00521 [Macaca fascicularis]
Length = 635
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G++IFV R ++ A L R+
Sbjct: 197 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG--RAQKKVERQAELKRK 254
Query: 105 SAQSPEE 111
Q +E
Sbjct: 255 FEQLKQE 261
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 295 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 340
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 100 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 145
>gi|392593257|gb|EIW82582.1| RNA-binding domain-containing protein [Coniophora puteana
RWD-64-598 SS2]
Length = 136
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 7/64 (10%)
Query: 30 HYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD-- 87
Y ++DS ++ D+ RS+G+G+VTF+T EEA A+ M+ LDGR I V+
Sbjct: 25 RYGAVTDSI-----VMRDRETGRSRGFGFVTFTTAEEANAAMGQMDQTELDGRTIRVNVA 79
Query: 88 NVRP 91
N +P
Sbjct: 80 NAKP 83
>gi|303668381|gb|ADM16300.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 121
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+I DK RS+G+G+V + E+A+ AL MNGK +DGR I VD
Sbjct: 36 VIRDKETGRSRGFGFVKYDNAEDAKDALDGMNGKSVDGRTIRVD 79
>gi|194758325|ref|XP_001961412.1| GF14957 [Drosophila ananassae]
gi|190615109|gb|EDV30633.1| GF14957 [Drosophila ananassae]
Length = 594
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89
A +IMD RSKGYG++T+ ++A+KAL +NG L GR++ V NV
Sbjct: 363 AIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMKVGNV 411
>gi|21388662|dbj|BAC00787.1| glycine-rich RNA-binding protein [Physcomitrella patens]
Length = 155
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 27/86 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
+ +AFS FG+VTE II D+ RS+G+G+VTF
Sbjct: 58 IKEAFSAFGEVTE---------------------------VKIICDRDTGRSRGFGFVTF 90
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD 87
+T+++A+ AL ++G+ L GR I V+
Sbjct: 91 ATDQDAEAALQALDGRDLAGRTIRVN 116
>gi|390476078|ref|XP_002759394.2| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 633
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 219 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 260
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 317 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 362
>gi|357160118|ref|XP_003578663.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 296
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSRRY 95
A ++ D+ RS+G+G+VT +++EE A+A ++G+ L+GR + V+ RP RR+
Sbjct: 241 ARVVYDRETGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEERPPRRF 296
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+I ++ ++S+G+G+VT ST EEA+KA+ + + GR++ V+ P
Sbjct: 148 VIYNRETDQSRGFGFVTMSTIEEAEKAVEMFHRYDVGGRLLTVNKAAP 195
>gi|126330207|ref|XP_001365338.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Monodelphis
domestica]
Length = 614
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V+F E+A KA+ +MNGK ++G+++FV R ++ A L R+
Sbjct: 222 VMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ +EA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYV 365
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T++ A +A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 170
>gi|71993203|ref|NP_001021709.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
gi|3880681|emb|CAA21572.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
Length = 646
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%)
Query: 53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
SKGYG+V F TEE AQ A+ +NG LL G+ +FV +P + N +
Sbjct: 159 SKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRE 204
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
+ +A ++ D+ RSKG+G+V F EEA A+ +MN K++ + ++V + R+ +
Sbjct: 343 ITSAKVMTDE-NGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQ--RKEDRR 399
Query: 99 APLARQSAQ 107
A LA Q Q
Sbjct: 400 AQLASQYMQ 408
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 12/111 (10%)
Query: 8 QFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFA-------ATIIMDKGKNRSKGYGYVT 60
+ G+ + Y K+ F HY + LFA ++ +GK SKG+G+V
Sbjct: 204 ELGETAKQFTNVYVKN---FGDHYNKETLEKLFAKFGNITSCEVMTVEGK--SKGFGFVA 258
Query: 61 FSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQSAQSPEE 111
F+ EEA+ A+ ++ ++G + + R ++ A L ++ Q E
Sbjct: 259 FANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAE 309
>gi|441613453|ref|XP_004088139.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 638
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDQSGKSKGFGFVSFEKHEDAQKAVDEMNGKELNGKQIYV 263
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T E A++A+ MNG L+ R +FV
Sbjct: 125 VLSCKVVCDE--NGSKGYGFVHFETREAAERAIEKMNGIPLNDRKVFV 170
>gi|440639411|gb|ELR09330.1| hypothetical protein GMDG_03896 [Geomyces destructans 20631-21]
Length = 839
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 33 LISDSF-LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
L S+S+ L AT+++D +SKGYG+VTF+ E+A++A + +GK GR + V+ P
Sbjct: 61 LFSESYPLKHATVVLDPETKQSKGYGFVTFADAEDAERAKEEFHGKAFQGRKLKVEVAEP 120
Query: 92 SRR 94
R
Sbjct: 121 RHR 123
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 28 PLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
P L+ F + + K K+ G+G+V + A+KAL +NG L+DGR++ VD
Sbjct: 175 PKDLELLFQKFGKVKHVTLPKVKDTQAGFGFVVMRGRKNAEKALEAVNGNLIDGRILAVD 234
>gi|297807995|ref|XP_002871881.1| hypothetical protein ARALYDRAFT_488820 [Arabidopsis lyrata subsp.
lyrata]
gi|297317718|gb|EFH48140.1| hypothetical protein ARALYDRAFT_488820 [Arabidopsis lyrata subsp.
lyrata]
Length = 426
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 24 QPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRV 83
Q F +HY S + A ++ D RSKGYG+V F+ E E +A+A+MNG R
Sbjct: 132 QETFRVHY-----SSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRP 186
Query: 84 IFVDNVRPSR------RYNTDAPL 101
+ + P + +Y T P+
Sbjct: 187 MRISAATPKKNVGVQQQYVTKGPV 210
>gi|168274276|dbj|BAG09558.1| chloroplast RNA binding protein [Mesembryanthemum crystallinum]
Length = 306
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSRRY 95
+ +A ++ D+ RS+G+G+V+ ++E E A+A ++G+ LDGR I V+ RP R +
Sbjct: 248 VLSARVVSDRETGRSRGFGFVSMASESEMNDAIAALDGQTLDGRAIRVNVAEERPRRAF 306
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 36/50 (72%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
A +I ++ +RS+G+G+VT ST EEA+KA+ +NG ++GR++ V+ P
Sbjct: 157 AEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMLNGFDMNGRLLTVNKAAP 206
>gi|444732647|gb|ELW72929.1| Polyadenylate-binding protein 5 [Tupaia chinensis]
Length = 382
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +I D G +SKG+G+V + T E AQKA+ D++GK +DG+V++V
Sbjct: 227 SVKVIRDAG-GKSKGFGFVRYETHEAAQKAVLDLHGKSMDGKVLYV 271
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRY 95
A ++M+ G+ KG+G V FS+ EEA KA+ +MNG+++ + + V + RR+
Sbjct: 331 AKVMMEVGQ--GKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLGQARRRW 382
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 29 LHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
L Y + + + ++ D N SKGY YV F + A +A+ MNG L+ R ++V
Sbjct: 122 LFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
Score = 34.3 bits (77), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 12 VTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKAL 71
VTED++Y F+ P PL + I D GYGYV F +A+ AL
Sbjct: 29 VTEDMLYKKFR--PAGPLRF----------TRICRDPVTRSPLGYGYVNFRFPADAEWAL 76
Query: 72 ADMNGKLLDGR 82
MN L++G+
Sbjct: 77 NTMNFDLINGK 87
>gi|414587608|tpg|DAA38179.1| TPA: hypothetical protein ZEAMMB73_126317 [Zea mays]
Length = 750
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ A +I D+ +SKGYG+V +S +A A+A MNG L+GRVI V
Sbjct: 453 IVMAKVIKDRNTGQSKGYGFVKYSDVSQANAAIAAMNGHHLEGRVIAV 500
>gi|326493824|dbj|BAJ85374.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 294
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSRRY 95
A ++ D+ RS+G+G+VT +++EE A+A ++G+ L+GR + V+ RP RR+
Sbjct: 239 ARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEERPPRRF 294
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 30/41 (73%), Gaps = 5/41 (12%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALA-----DMNGKLL 79
+I ++ ++S+G+G+VT ST EEA+KA+ D+NG+LL
Sbjct: 147 VIYNRETDQSRGFGFVTMSTIEEAEKAVEMFHRYDVNGRLL 187
>gi|291408594|ref|XP_002720593.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oryctolagus cuniculus]
Length = 636
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>gi|242036065|ref|XP_002465427.1| hypothetical protein SORBIDRAFT_01g038690 [Sorghum bicolor]
gi|241919281|gb|EER92425.1| hypothetical protein SORBIDRAFT_01g038690 [Sorghum bicolor]
Length = 727
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ A +I D+ +SKGYG+V +S +A A+A MNG L+GRVI V
Sbjct: 454 IVMAKVIKDRNTGQSKGYGFVKYSDVSQANAAIAAMNGHHLEGRVIAV 501
>gi|119612225|gb|EAW91819.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_e [Homo
sapiens]
Length = 633
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 219 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 260
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 317 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 362
>gi|449431998|ref|XP_004133787.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Cucumis
sativus]
gi|449477982|ref|XP_004155183.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Cucumis
sativus]
Length = 481
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVI 84
+F II DK SKGY ++ F T+E AQKA+ D++GK + G+ I
Sbjct: 131 IFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVKGKTI 176
>gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus]
Length = 636
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>gi|35570|emb|CAA68428.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 219 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 260
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 317 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 362
>gi|402697297|gb|AFQ90836.1| polyA-binding protein cytoplasmic 1, partial [Testudo hermanni]
Length = 176
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V R ++ L R+
Sbjct: 119 VMTDESGKSKGFGFVSFERHEDAQKAVXEMNGKELNGKQIYVG--RAQKKVERQTELKRK 176
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV R R +
Sbjct: 22 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG--RFKSRKERE 77
Query: 99 APLARQSAQ 107
A L ++ +
Sbjct: 78 AELGARAKE 86
>gi|301756358|ref|XP_002914026.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 636
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>gi|297620951|ref|YP_003709088.1| RNA-binding protein [Waddlia chondrophila WSU 86-1044]
gi|297376252|gb|ADI38082.1| RNA-binding protein [Waddlia chondrophila WSU 86-1044]
gi|337293226|emb|CCB91217.1| putative RNA-binding protein rbpA [Waddlia chondrophila 2032/99]
Length = 92
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV-----RPSR 93
+ +A II D+ +SKG+G+V F+ +E A++A+ ++NG +GR I V+ RP R
Sbjct: 27 VLSAKIITDRFTGQSKGFGFVEFADKEAAEEAIKELNGSNFEGRSIVVNEAKPMEDRPPR 86
Query: 94 RYNT 97
R T
Sbjct: 87 RSKT 90
>gi|126330205|ref|XP_001365269.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Monodelphis
domestica]
Length = 630
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V+F E+A KA+ +MNGK ++G+++FV R ++ A L R+
Sbjct: 222 VMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ +EA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYV 365
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T++ A +A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 170
>gi|41386798|ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]
gi|46367787|ref|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens]
gi|383872540|ref|NP_001244826.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|73974130|ref|XP_856708.1| PREDICTED: polyadenylate-binding protein 1 isoform 6 [Canis lupus
familiaris]
gi|194036975|ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa]
gi|332213999|ref|XP_003256115.1| PREDICTED: polyadenylate-binding protein 1 [Nomascus leucogenys]
gi|344273312|ref|XP_003408467.1| PREDICTED: polyadenylate-binding protein 1-like [Loxodonta
africana]
gi|402878853|ref|XP_003903080.1| PREDICTED: polyadenylate-binding protein 1 [Papio anubis]
gi|3183544|sp|P11940.2|PABP1_HUMAN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|47117093|sp|P61286.1|PABP1_BOVIN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|1562511|gb|AAD08718.1| poly(A)-binding protein [Homo sapiens]
gi|8979741|emb|CAB96752.1| polyadenylate-binding protein 1 [Bos taurus]
gi|16358990|gb|AAH15958.1| PABPC1 protein [Homo sapiens]
gi|23270713|gb|AAH23520.1| Poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
gi|74268035|gb|AAI02366.1| Poly(A) binding protein, cytoplasmic 1 [Bos taurus]
gi|119612221|gb|EAW91815.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|119612223|gb|EAW91817.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|123993665|gb|ABM84434.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|123999981|gb|ABM87499.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|168278070|dbj|BAG11013.1| polyadenylate-binding protein 1 [synthetic construct]
gi|296480464|tpg|DAA22579.1| TPA: polyadenylate-binding protein 1 [Bos taurus]
gi|380811722|gb|AFE77736.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940022|gb|AFI33616.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940024|gb|AFI33617.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 636
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>gi|400602999|gb|EJP70597.1| cutinase negative acting protein [Beauveria bassiana ARSEF 2860]
Length = 448
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPS 92
+ +A ++ DK RS+G+GYV F E A KA M G+ +DGR + +D N +P+
Sbjct: 229 IVSARVVTDKNTGRSRGFGYVDFGDSESATKAYEAMQGQEIDGRALNLDYANAKPT 284
>gi|387861097|gb|AFK08578.1| glycine-rich RNA binding protein 2c [Camelina sativa]
gi|387861103|gb|AFK08581.1| glycine-rich RNA binding protein 2c [Camelina sativa]
Length = 158
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 29/93 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAF+ FG+V + A +I+D+ R +G+G+V F
Sbjct: 52 LRDAFAHFGEVVD---------------------------AKVIVDRETGRPRGFGFVNF 84
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD--NVRPS 92
S E A A+++M+GK L+GR I V+ N RPS
Sbjct: 85 SDETAASAAISEMDGKDLNGRNIRVNPANDRPS 117
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>gi|82802757|gb|ABB92429.1| PABP3 [Hylobates lar]
Length = 635
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDQSGKSKGFGFVSFEKHEDAQKAVDEMNGKELNGKQIYV 263
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATEPLYV 365
Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T E A++A+ MNG L+ +FV
Sbjct: 125 VLSCKVVCDE--NGSKGYGFVHFGTREAAERAIEKMNGIPLNDCKVFV 170
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>gi|354498761|ref|XP_003511482.1| PREDICTED: polyadenylate-binding protein 1-like, partial
[Cricetulus griseus]
Length = 571
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 60 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 105
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 157 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 198
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + +V
Sbjct: 255 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPFYV 300
>gi|344257059|gb|EGW13163.1| Polyadenylate-binding protein 1 [Cricetulus griseus]
Length = 565
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 54 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 99
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 151 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 192
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + +V
Sbjct: 249 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPFYV 294
>gi|301764797|ref|XP_002917810.1| PREDICTED: putative RNA-binding protein 3-like isoform 1
[Ailuropoda melanoleuca]
Length = 156
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
++ D+ RS+G+G++TF+ E A A+ MNG+ LDGR I VD+ S R
Sbjct: 37 VVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSAR 87
>gi|291388359|ref|XP_002710763.1| PREDICTED: poly A binding protein, cytoplasmic 4 [Oryctolagus
cuniculus]
Length = 636
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>gi|225452270|ref|XP_002270233.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Vitis
vinifera]
Length = 312
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSR 93
A ++ D+ RS+G+G+VT S+E E A+A ++G+ LDGR I V+ RP R
Sbjct: 256 ARVVYDRDTQRSRGFGFVTMSSETELNDAIAALDGQSLDGRAIRVNVAEERPRR 309
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
A +I ++ ++S+G+G++T ST EEA+KA+ N L+GR + V+ P
Sbjct: 162 AEVIYNRETDQSRGFGFITMSTVEEAEKAVEMFNRYDLNGRFLTVNKAAP 211
>gi|207080212|ref|NP_001128842.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|75070631|sp|Q5R8F7.1|PABP1_PONAB RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|55730462|emb|CAH91953.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>gi|440913295|gb|ELR62762.1| Polyadenylate-binding protein 1, partial [Bos grunniens mutus]
Length = 572
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 61 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 106
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 158 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 199
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 256 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 301
>gi|432107630|gb|ELK32863.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 565
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 54 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 99
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 151 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 192
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 249 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 294
>gi|431901758|gb|ELK08635.1| Polyadenylate-binding protein 1 [Pteropus alecto]
Length = 636
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>gi|780291|gb|AAA65224.1| polyadenylate-binding protein [Caenorhabditis elegans]
Length = 646
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%)
Query: 53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
SKGYG+V F TEE AQ A+ +NG LL G+ +FV +P + N +
Sbjct: 159 SKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRE 204
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
+ +A ++ D+ RSKG+G+V F EEA A+ +MN K++ + ++V R+ +
Sbjct: 343 ITSAKVMTDE-NGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYV--AIGQRKEDRR 399
Query: 99 APLARQSAQ 107
A LA Q Q
Sbjct: 400 AQLASQYMQ 408
>gi|115478330|ref|NP_001062760.1| Os09g0279500 [Oryza sativa Japonica Group]
gi|49387841|dbj|BAD26506.1| putative plastid-specific ribosomal protein 2 precursor [Oryza
sativa Japonica Group]
gi|49388840|dbj|BAD26030.1| putative plastid-specific ribosomal protein 2 precursor [Oryza
sativa Japonica Group]
gi|113630993|dbj|BAF24674.1| Os09g0279500 [Oryza sativa Japonica Group]
gi|215695254|dbj|BAG90445.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737768|dbj|BAG96898.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222641205|gb|EEE69337.1| hypothetical protein OsJ_28655 [Oryza sativa Japonica Group]
Length = 245
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 29 LHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
L F + +AT+ G +SKGYG+VTFS+EEE Q A++ N L+G+ I V+
Sbjct: 185 LKNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRVN 243
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPL 101
A ++ DK RS+ +G+VT ST EEA A+ +N + GR I V NV S N D
Sbjct: 99 AEVMFDKYTGRSRRFGFVTMSTPEEANAAIESLNETEVGGRKIKV-NVTESFLPNID--- 154
Query: 102 ARQSAQSPE 110
+SA PE
Sbjct: 155 --RSAPEPE 161
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>gi|338728570|ref|XP_001492678.3| PREDICTED: polyadenylate-binding protein 1 [Equus caballus]
Length = 565
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 54 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 99
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 151 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 192
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 249 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 294
>gi|88911212|gb|ABD58896.1| chloroplast single strand DNA binding protein [Mesostigma viride]
Length = 299
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 33/46 (71%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
A ++MD+ RS+G+ +V ST EEA +A+A+++G+ + GR I V+
Sbjct: 233 ARVVMDRDSGRSRGFAFVALSTPEEANEAMANLDGEEIGGRTIRVN 278
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 27/91 (29%)
Query: 1 MLADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVT 60
ML AFSQFG+V AA +++D+ RS+G+ +VT
Sbjct: 105 MLNQAFSQFGEVK---------------------------AAEVVLDRESGRSRGFAFVT 137
Query: 61 FSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
++ + A+KA ++G L GR I V+ +P
Sbjct: 138 MASPDAAEKARRGLDGTELAGRAIRVNFPQP 168
>gi|449284083|gb|EMC90664.1| Polyadenylate-binding protein 1, partial [Columba livia]
Length = 573
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 61 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 106
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 158 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 199
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 256 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 301
>gi|397467532|ref|XP_003805466.1| PREDICTED: RNA-binding motif protein, X-linked-like-3 [Pan
paniscus]
Length = 393
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV-DNVRPS 92
+I D+ N+S+G+ +VTF + +A+ A DMNGK LDG+ I V ++P+
Sbjct: 39 LIKDRKTNKSRGFAFVTFESPADAKAAARDMNGKYLDGKAIMVAQTIKPA 88
>gi|197097606|ref|NP_001126097.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|55730342|emb|CAH91893.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRVVATKPLYV 365
>gi|426236179|ref|XP_004012050.1| PREDICTED: polyadenylate-binding protein 1 [Ovis aries]
Length = 577
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 66 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 111
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 163 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 204
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 261 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 306
>gi|398409740|ref|XP_003856335.1| hypothetical protein MYCGRDRAFT_102491 [Zymoseptoria tritici
IPO323]
gi|339476220|gb|EGP91311.1| hypothetical protein MYCGRDRAFT_102491 [Zymoseptoria tritici
IPO323]
Length = 505
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
L II D+ RSKG+GYV FS + A+KAL NG LDGR + +D P R N D
Sbjct: 268 LAGVRIITDRDSGRSKGFGYVEFSDPQNAKKALEAKNGAELDGRELRLDFSTP--RTN-D 324
Query: 99 APLA 102
P A
Sbjct: 325 GPGA 328
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 4 DAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATII-----MDKGKNRSKGYGY 58
D ++FG T F F I++ F TI D+ KG+GY
Sbjct: 334 DRAARFGDTTNAPAATLFVGNISFDADENAITEYFQEHGTIKAVRLPTDRETGAPKGFGY 393
Query: 59 VTFSTEEEAQKALADMNGKLLDGRVIFVD 87
V S+ EEAQ A + G + GR I +D
Sbjct: 394 VEMSSIEEAQAAFTALQGADIAGRPIRLD 422
>gi|302414816|ref|XP_003005240.1| gar2 [Verticillium albo-atrum VaMs.102]
gi|261356309|gb|EEY18737.1| gar2 [Verticillium albo-atrum VaMs.102]
Length = 437
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 14/87 (16%)
Query: 12 VTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKAL 71
V +D++Y F FP L +A +I D+ RS+G+GYV FS E A+ AL
Sbjct: 188 VNDDILYQAFSE---FP---------NLTSARVITDREGGRSRGFGYVDFSDAESAKAAL 235
Query: 72 ADMNGKLLDGRVIFVD--NVRPSRRYN 96
NG L+GR + +D RP R N
Sbjct: 236 EAKNGTELEGRNMNIDFSGKRPERSDN 262
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 29 LHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL----DGRVI 84
+H F + + + + D KG+GYV+FS+ ++A+KAL+++NG+ L GR +
Sbjct: 299 VHAFFATVAEPTSVRLPTDPESGNLKGFGYVSFSSIDDAKKALSELNGQYLGEGSSGRAV 358
Query: 85 FVD 87
+D
Sbjct: 359 RLD 361
>gi|193787802|dbj|BAG53005.1| unnamed protein product [Homo sapiens]
Length = 636
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>gi|149637721|ref|XP_001509272.1| PREDICTED: polyadenylate-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 636
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>gi|417396785|gb|JAA45426.1| Putative mrna cleavage and polyadenylation factor i complex
subunit rna15 [Desmodus rotundus]
Length = 190
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
++ D+ RS+G+G++TF+ E A A+ MNG+ LDGR I VD+ S R
Sbjct: 37 VVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSAR 87
>gi|291407441|ref|XP_002719942.1| PREDICTED: RNA binding motif protein 3 [Oryctolagus cuniculus]
Length = 155
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
++ D+ RS+G+G++TF+ E A A+ MNG+ LDGR I VD+ S R
Sbjct: 37 VVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSAR 87
>gi|281350417|gb|EFB26001.1| hypothetical protein PANDA_001865 [Ailuropoda melanoleuca]
Length = 640
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 129 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 174
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 226 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 267
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 324 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 369
>gi|154322082|ref|XP_001560356.1| hypothetical protein BC1G_01188 [Botryotinia fuckeliana B05.10]
gi|347833400|emb|CCD49097.1| similar to Grp1p [Botryotinia fuckeliana]
Length = 358
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 9/62 (14%)
Query: 26 LFPLHYFLISDSFLFAATIIMDKGKNR-SKGYGYVTFSTEEEAQKALADMNGKLLDGRVI 84
L P+ F++ + +G+ R +G+G+VT S+EE+ QKA+A+MNGK ++GR I
Sbjct: 267 LRPIPRFMVKK--------LQARGEPRKGRGFGFVTLSSEEQQQKAVAEMNGKEIEGREI 318
Query: 85 FV 86
V
Sbjct: 319 AV 320
>gi|348588301|ref|XP_003479905.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 599
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 88 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 133
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 185 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 226
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 283 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 328
>gi|344246646|gb|EGW02750.1| Polyadenylate-binding protein 1 [Cricetulus griseus]
Length = 127
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V R ++ L R+
Sbjct: 58 VMTDESGKSKGFGFVSFEKHEDAQKAVDEMNGKELNGKQIYVG--RAQKKMEQQTELKRK 115
Query: 105 SAQSPEE 111
Q ++
Sbjct: 116 FEQMKQD 122
>gi|326527061|dbj|BAK04472.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 139
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 27/86 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L +AFS+FGQVT+ A +I D+ S+G+G+V +
Sbjct: 56 LREAFSKFGQVTD---------------------------ARVITDRISGYSRGFGFVKY 88
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD 87
+T EEA + + M+GK DG VIF +
Sbjct: 89 ATVEEAAEGIKGMDGKFFDGWVIFAE 114
>gi|224046575|ref|XP_002200268.1| PREDICTED: polyadenylate-binding protein 1 [Taeniopygia guttata]
Length = 637
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>gi|337278094|ref|YP_004617565.1| RNA-binding protein [Ramlibacter tataouinensis TTB310]
gi|334729170|gb|AEG91546.1| Candidate RNA-binding protein [Ramlibacter tataouinensis TTB310]
Length = 95
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAP 100
+A ++MD+ RSKG+G+V + EAQ A+ M+G+ GR + V+ RP +
Sbjct: 31 SAKVVMDRDTGRSKGFGFVEMGSAAEAQSAIQGMHGQQHGGRDLVVNEARPMEPRTGGSG 90
Query: 101 LARQ 104
AR+
Sbjct: 91 AARR 94
>gi|301763992|ref|XP_002917400.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 611
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M S+G+G+V F EEAQKA+ DMNGK + GR+++V R +R L R+
Sbjct: 222 VMRDDIGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLYVG--RAQKRVERQNELKRR 279
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 37 SFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
+ L + D G S+G+G+V F T E A +A+A MNG LL+ R +FV + + SRR
Sbjct: 124 NILSCKVVCDDHG---SRGFGFVHFETHEAAHQAIATMNGMLLNDRKVFVGHFK-SRR 177
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + +M +G SKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 319 VITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365
>gi|55778182|gb|AAH86491.1| Rbm3 protein [Mus musculus]
Length = 128
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 43 TIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
++ D+ RS+G+G++TF+ E A A+ MNG+ LDGR I VD+ S
Sbjct: 36 VVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKS 85
>gi|410987610|ref|XP_004000091.1| PREDICTED: polyadenylate-binding protein 1 [Felis catus]
Length = 672
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 161 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 206
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 258 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 299
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 356 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 401
>gi|357144334|ref|XP_003573255.1| PREDICTED: uncharacterized protein LOC100824407 [Brachypodium
distachyon]
Length = 226
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAF +FG+VTE +++DK RS+G+G+VTF
Sbjct: 23 LKDAFGKFGRVTE---------------------------TKVVLDKYSGRSRGFGFVTF 55
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
++ ++A+ MNG LDGR I V+ +P
Sbjct: 56 DDKKAMEEAVEAMNGIDLDGRNITVERAQP 85
>gi|281345572|gb|EFB21156.1| hypothetical protein PANDA_005635 [Ailuropoda melanoleuca]
Length = 605
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M S+G+G+V F EEAQKA+ DMNGK + GR+++V R +R L R+
Sbjct: 222 VMRDDIGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLYVG--RAQKRVERQNELKRR 279
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
+ + ++ D + S+G+G+V F T E A +A+A MNG LL+ R +FV + + SRR
Sbjct: 125 ILSCKVVCDD--HGSRGFGFVHFETHEAAHQAIATMNGMLLNDRKVFVGHFK-SRR 177
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + +M +G SKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 319 VITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365
>gi|242076850|ref|XP_002448361.1| hypothetical protein SORBIDRAFT_06g025810 [Sorghum bicolor]
gi|241939544|gb|EES12689.1| hypothetical protein SORBIDRAFT_06g025810 [Sorghum bicolor]
Length = 727
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ A +I D+ +SKGYG+V +S +A A+A MNG L+GRVI V
Sbjct: 455 IVMAKVIKDRNTGQSKGYGFVKYSDVSQANAAIAAMNGHHLEGRVIAV 502
>gi|168016725|ref|XP_001760899.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687908|gb|EDQ74288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 155
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 27/86 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
+ +AFS FG+VTE II D+ RS+G+G+VTF
Sbjct: 58 IKEAFSAFGEVTE---------------------------VKIICDRDTGRSRGFGFVTF 90
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD 87
+T+++A+ AL ++G+ L GR I V+
Sbjct: 91 ATDQDAEAALQALDGRDLAGRTIRVN 116
>gi|425781538|gb|EKV19498.1| Ribosome biogenesis (Nop4), putative [Penicillium digitatum PHI26]
gi|425782769|gb|EKV20659.1| Ribosome biogenesis (Nop4), putative [Penicillium digitatum Pd1]
Length = 722
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 35 SDSFLFA-ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
S S++ A ++ DK SKG+G+VTF+ E+A+ AL + NG DG++I VD SR
Sbjct: 57 SQSYIIKHAVVVSDKETKVSKGFGFVTFADVEDAESALKEFNGSKFDGKIIRVDYAE-SR 115
Query: 94 RYNTDAPLAR 103
+ D + R
Sbjct: 116 KREIDEKIGR 125
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 37 SFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
SF + + K + G+G+VT + A+KAL +NGK +DGR I VD
Sbjct: 172 SFGKVKFVTLPKRNGKLSGFGFVTMRGRKNAEKALQMINGKEIDGRQIAVD 222
>gi|356568734|ref|XP_003552565.1| PREDICTED: uncharacterized protein LOC100807155 [Glycine max]
Length = 244
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+IMD+ RS+G+G+VTF+T E+A A+ M+G+ L GR I V+
Sbjct: 71 VIMDRETGRSRGFGFVTFATSEDASSAIQGMDGQDLHGRRIRVN 114
>gi|255645506|gb|ACU23248.1| unknown [Glycine max]
Length = 243
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+IMD+ RS+G+G+VTF+T E+A A+ M+G+ L GR I V+
Sbjct: 71 VIMDRETGRSRGFGFVTFATSEDASSAIQGMDGQDLHGRRIRVN 114
>gi|242035621|ref|XP_002465205.1| hypothetical protein SORBIDRAFT_01g034120 [Sorghum bicolor]
gi|241919059|gb|EER92203.1| hypothetical protein SORBIDRAFT_01g034120 [Sorghum bicolor]
Length = 262
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSRR 94
+ A I+ D+ RS+G+G+VT+ + EE + A+++++G LDGR I V +P RR
Sbjct: 203 VLEARIVYDRESGRSRGFGFVTYGSAEEVENAISNLDGSDLDGRQIRVTVAESKPPRR 260
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
+I DK RS+G+G+VT S+ +E + A+ NG +LDGR + V++ P R
Sbjct: 114 VIYDKLTGRSRGFGFVTMSSVQEVEAAVEQFNGYVLDGRSLRVNSGPPPPR 164
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V+F E+A KA+ +MNGK ++G+++FV R ++ A L R+
Sbjct: 222 VMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVG--RAQKKVERQAELKRR 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T++ A +A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 170
>gi|829254|emb|CAA49174.1| glycine-rich RNA-binding protein [Arabidopsis thaliana]
Length = 139
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 29/93 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAF+ FG V + A +I+D+ RS+G+G+V F
Sbjct: 32 LRDAFAHFGDVVD---------------------------AKVIVDRETGRSRGFGFVNF 64
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD--NVRPS 92
+ E A A+++M+GK L+GR I V+ N RPS
Sbjct: 65 NDEGAATAAISEMDGKELNGRHIRVNPANDRPS 97
>gi|224115158|ref|XP_002316957.1| predicted protein [Populus trichocarpa]
gi|222860022|gb|EEE97569.1| predicted protein [Populus trichocarpa]
Length = 153
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 38/111 (34%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L +AFS+FG+V + A ++ D+ SKG+G+V +
Sbjct: 71 LQEAFSKFGEVVQ---------------------------ARVVTDRVSGYSKGFGFVKY 103
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQSAQSPEEN 112
+T E+A + + M+G+ LDG VIF + RP RQ P+ N
Sbjct: 104 ATLEDAAEGIKGMDGQFLDGWVIFAEYARP-----------RQPPSEPQNN 143
>gi|291408596|ref|XP_002720594.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oryctolagus cuniculus]
Length = 614
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>gi|193215305|ref|YP_001996504.1| RNP-1 like RNA-binding protein [Chloroherpeton thalassium ATCC
35110]
gi|193088782|gb|ACF14057.1| RNP-1 like RNA-binding protein [Chloroherpeton thalassium ATCC
35110]
Length = 104
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+A II+DK +S+G+G+V E +A++A+ +NG LDGR + V+ RP
Sbjct: 29 SANIIVDKYSGKSRGFGFVDMPNEADAEQAIEALNGSQLDGRSLKVNEARP 79
>gi|22507391|ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus]
gi|16307591|gb|AAH10345.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 615
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G+ IFV R ++ A L R+
Sbjct: 222 VMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|402901594|ref|XP_003913731.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 636
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFV 170
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|347535511|ref|YP_004842936.1| putative RNA-binding protein RbpA [Flavobacterium branchiophilum
FL-15]
gi|345528669|emb|CCB68699.1| Putative RNA-binding protein RbpA [Flavobacterium branchiophilum
FL-15]
Length = 117
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ II DK RSKG+G+V + EAQKA+ ++NG + GR I V+ P
Sbjct: 29 SVKIITDKFTGRSKGFGFVEMPNDSEAQKAIDELNGATVQGRAIVVNKSEP 79
>gi|193212689|ref|YP_001998642.1| RNP-1 like RNA-binding protein [Chlorobaculum parvum NCIB 8327]
gi|193086166|gb|ACF11442.1| RNP-1 like RNA-binding protein [Chlorobaculum parvum NCIB 8327]
Length = 88
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAFS+FG V + A++IMDK RSKG+G+V
Sbjct: 17 LRDAFSEFGDVAK---------------------------ASVIMDKFSGRSKGFGFVEM 49
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ +EEA +A++ +N L R I V+ +P
Sbjct: 50 TNDEEANEAISSLNESKLGSRNIKVNEAKP 79
>gi|225461185|ref|XP_002283144.1| PREDICTED: glycine-rich RNA-binding protein 2 [Vitis vinifera]
gi|147854770|emb|CAN78606.1| hypothetical protein VITISV_024164 [Vitis vinifera]
gi|302143178|emb|CBI20473.3| unnamed protein product [Vitis vinifera]
Length = 135
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L +AFS+FGQV A ++ D+ SKG+G+V +
Sbjct: 57 LHEAFSKFGQVVN---------------------------ARVVTDRVSGYSKGFGFVRY 89
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ E+A + + M+GK LDG VIF + RP
Sbjct: 90 VSLEDAAEGIKGMDGKFLDGWVIFAEYARP 119
>gi|355754577|gb|EHH58478.1| hypothetical protein EGM_08341 [Macaca fascicularis]
Length = 637
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+A+KA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDARKAVDEMNGKELNGKQIYV 263
>gi|109120204|ref|XP_001091129.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Macaca
mulatta]
Length = 637
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 263
>gi|194334049|ref|YP_002015909.1| RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM
271]
gi|194311867|gb|ACF46262.1| RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM
271]
Length = 90
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV-----RPSRRY 95
+A II DK RSKG+G+V S+ ++A +A+ +N L+GR I V+ RP+RRY
Sbjct: 29 SANIITDKFTGRSKGFGFVEMSSSDDANEAIESLNDTDLNGRTIKVNEAKPRAERPARRY 88
>gi|414878515|tpg|DAA55646.1| TPA: hypothetical protein ZEAMMB73_431003 [Zea mays]
Length = 113
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ AA +I +SKG+G+V FS++ +A AL MNG++LDGR I V
Sbjct: 59 VIAAKVICHPTSGKSKGFGFVKFSSQNQADAALQKMNGQVLDGRKIRV 106
>gi|390460450|ref|XP_002745401.2| PREDICTED: polyadenylate-binding protein 4-like [Callithrix
jacchus]
Length = 384
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V+F + E A+KA+ +MNG+ ++G++IFV R ++ A L +
Sbjct: 221 VMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFV--ARAQKKVERQAELKQM 278
Query: 105 SAQSPEE 111
Q +E
Sbjct: 279 FEQLKKE 285
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQSAQ 107
SKGY +V F + A +A+ +MNGKLL G +FV R R + +A L ++++
Sbjct: 136 SKGYAFVHFQNQSAADRAIEEMNGKLLQGCKVFVG--RFKSRKDREAELRSKASE 188
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 50 KNRSKGYGYVTFSTEEEAQKALADMNGKLL 79
+ +SKG+G + FS+ E+A KA+ +MNG++L
Sbjct: 328 EGQSKGFGLICFSSPEDALKAMTEMNGRIL 357
>gi|168012689|ref|XP_001759034.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689733|gb|EDQ76103.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 394
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLAR 103
+ MD+ N KGYGYV F T +A+KALA M+G +DG ++ + R+ PL R
Sbjct: 119 LAMDRTVNLPKGYGYVEFKTRVDAEKALAHMDGGQIDGNIVSAQFILVPRK-KASPPLKR 177
Query: 104 QSAQSPE 110
+ P+
Sbjct: 178 GVSPPPK 184
>gi|430744757|ref|YP_007203886.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
gi|430016477|gb|AGA28191.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
Length = 114
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+A II+D+ NRSKG+G+V T+ +AQ A+ +N + DGR + V+ +P
Sbjct: 31 SAQIIIDRDTNRSKGFGFVEMDTDAQAQAAIQGLNDRDHDGRNLTVNEAKP 81
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 32/42 (76%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +S+G+G+V+F E+AQKA+ +MNGK ++G++++V
Sbjct: 222 VMTDENGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYV 263
>gi|148698435|gb|EDL30382.1| mCG5546, isoform CRA_a [Mus musculus]
Length = 632
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G+ IFV R ++ A L R+
Sbjct: 239 VMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVG--RAQKKVERQAELKRK 296
Query: 105 SAQSPEE 111
Q +E
Sbjct: 297 FEQLKQE 303
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 337 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 382
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 142 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 187
>gi|448878435|gb|AGE46180.1| arginine/serine-rich splicing factor SR45 transcript I
[Physcomitrella patens subsp. patens]
gi|448878437|gb|AGE46181.1| arginine/serine-rich splicing factor SR45 transcript II
[Physcomitrella patens subsp. patens]
Length = 404
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLAR 103
+ MD+ N KGYGYV F T +A+KALA M+G +DG ++ + R+ PL R
Sbjct: 119 LAMDRTVNLPKGYGYVEFKTRVDAEKALAHMDGGQIDGNIVSAQFILVPRK-KASPPLKR 177
Query: 104 QSAQSPE 110
+ P+
Sbjct: 178 GVSPPPK 184
>gi|410910966|ref|XP_003968961.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 635
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +S+G+G+V+F E+AQKA+ +MNGK ++G+ I+V R ++ A L R+
Sbjct: 222 VMTDDSGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKPIYVG--RAQKKVERQAELKRK 279
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>gi|324510042|gb|ADY44204.1| Nucleolysin TIAR [Ascaris suum]
Length = 367
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 31/43 (72%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVI 84
A +I D +SKGYG+V+F ++E A+KA+A MNG+L+ R I
Sbjct: 163 AKVIRDPQTMKSKGYGFVSFPSKESAEKAIAGMNGQLIGRRQI 205
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 32/42 (76%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +S+G+G+V+F E+AQKA+ +MNGK ++G++++V
Sbjct: 222 VMTDENGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYV 263
>gi|297274127|ref|XP_002800732.1| PREDICTED: polyadenylate-binding protein 1 [Macaca mulatta]
Length = 605
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 288 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 333
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 36 DSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
D L + ++ D+ N SKGYG+V F T E A++A+ MNG LL+ R +FV
Sbjct: 90 DPSLRRSGVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFV 138
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 190 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 231
>gi|296226907|ref|XP_002759113.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Callithrix jacchus]
Length = 604
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 288 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 333
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 36 DSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
D L + ++ D+ N KGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 90 DPSLRKSGVVCDE--NGPKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 138
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 30/42 (71%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ MNGK L+G+ I+V
Sbjct: 190 VMTDESGKSKGFGFVSFERHEDAQKAVDVMNGKELNGKQIYV 231
>gi|444726222|gb|ELW66761.1| Polyadenylate-binding protein 1-like protein [Tupaia chinensis]
Length = 568
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M S+G+G+V F EEAQKA+ MNGK + GR+++V R +R L R+
Sbjct: 197 VMRDSSGHSRGFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYVG--RAQKRLERQNELKRR 254
Query: 105 SAQ 107
Q
Sbjct: 255 FEQ 257
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
+ + ++ D+ + S+G+G+V F T + AQ+A++ MNG LL+ R +FV + + R
Sbjct: 100 ILSCKVVCDE--HGSRGFGFVHFETHDAAQRAISTMNGMLLNDRKVFVGHFKSRR 152
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + +M +G + SKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 294 VITSAKVMTEGGH-SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 340
>gi|440473946|gb|ELQ42715.1| hypothetical protein OOU_Y34scaffold00194g28 [Magnaporthe oryzae
Y34]
gi|440489138|gb|ELQ68816.1| hypothetical protein OOW_P131scaffold00217g29 [Magnaporthe oryzae
P131]
Length = 182
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89
A ++ D+ RS+G+G+V ++ E++AQKA+ MN DGR I VD
Sbjct: 32 AVVVKDRDTGRSRGFGFVRYTNEDDAQKAITAMNNVEFDGRTIRVDKA 79
>gi|426360413|ref|XP_004047438.1| PREDICTED: polyadenylate-binding protein 1 [Gorilla gorilla
gorilla]
Length = 682
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 171 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 216
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 268 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 309
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 366 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 411
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ N+
Sbjct: 54 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNXXXXEASNI 102
>gi|225423629|ref|XP_002274983.1| PREDICTED: glycine-rich RNA-binding protein 2 [Vitis vinifera]
gi|359473083|ref|XP_003631246.1| PREDICTED: glycine-rich RNA-binding protein 2-like [Vitis vinifera]
gi|297738010|emb|CBI27211.3| unnamed protein product [Vitis vinifera]
gi|297738011|emb|CBI27212.3| unnamed protein product [Vitis vinifera]
Length = 140
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 27/92 (29%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L + FS+FGQ+ E ++ DK R +GY ++ +
Sbjct: 54 LQEEFSKFGQIVE---------------------------VDVVKDKAAKRPRGYAFIQY 86
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
++++ A AL +M+ K LDGRV+ V+ +P +
Sbjct: 87 TSQDHAMLALENMDHKYLDGRVVCVELAKPGK 118
>gi|406861320|gb|EKD14375.1| RNA recognition domain-containing protein [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 324
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 39/60 (65%)
Query: 46 MDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQS 105
M++ N ++G Y+ +++E +A+ A+A M+ +DG VI V V P R+++ PLAR++
Sbjct: 134 MNRSFNTNRGTAYILYTSEADAEAAIAHMHESQIDGAVINVSIVLPRRKFSPSPPLARRT 193
>gi|355757333|gb|EHH60858.1| RNA-binding motif protein 3 [Macaca fascicularis]
Length = 157
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
++ D+ RS+G+G++TF+ E A A+ MNG+ LDGR I VD+ S R
Sbjct: 37 VVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHAGKSAR 87
>gi|344292751|ref|XP_003418089.1| PREDICTED: putative RNA-binding protein 3-like [Loxodonta
africana]
Length = 154
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
++ D+ RS+G+G++TF+ E A A+ MNG+ LDGR I VD+ S R
Sbjct: 37 VVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSAR 87
>gi|255726450|ref|XP_002548151.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240134075|gb|EER33630.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 472
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
L A ++ D +RS+GYG+VTFS + +A+ AL MNG+ L GR I +
Sbjct: 201 LKQAHVMWDMQTSRSRGYGFVTFSEQADAELALQTMNGEWLGGRAIRCN 249
>gi|449281934|gb|EMC88877.1| Embryonic polyadenylate-binding protein [Columba livia]
Length = 646
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 19/88 (21%)
Query: 40 FAATIIMDKGKNRSKGYGYVTFSTEEEAQK----------------ALADMNGKLLDGRV 83
+ ++MD RSKG+G+V F EEAQK A+ADMNGK ++GR+
Sbjct: 218 LSVKVMMDS-TGRSKGFGFVNFEKHEEAQKARGSSCCAQRPPLRWQAVADMNGKEINGRI 276
Query: 84 IFVDNVRPSRRYNTDAPLARQSAQSPEE 111
++V R +R + L R+ Q +E
Sbjct: 277 VYVG--RAQKRLERQSELKRKFEQIKQE 302
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 88
+ + ++ D+ N S+GYG+V F T E A +A+ MNG LL+ R +FV +
Sbjct: 125 ILSCKVVCDE--NGSRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGH 172
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 32/42 (76%), Gaps = 1/42 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +G + SKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 341 VMTEGGH-SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 381
>gi|358346231|ref|XP_003637173.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355503108|gb|AES84311.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 622
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 33 LISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
L S+ + +M + RSKG G+V F+T EEA KA+ +MNGK++ + ++V
Sbjct: 323 LFSEFGTITSCKVMSDARGRSKGVGFVAFTTPEEASKAIDEMNGKIIGQKPVYV 376
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + + MD SKG+G+V F ++ A+ A+ ++G+L++ + ++V
Sbjct: 139 VLSCKVAMDS-NGHSKGHGFVQFDNDQSAKNAIEKLDGRLMNDKKVYV 185
>gi|297263480|ref|XP_001096930.2| PREDICTED: polyadenylate-binding protein 3 [Macaca mulatta]
Length = 592
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 170 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 215
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 365 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 410
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Query: 40 FAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ ++ D+ +SKG+G+V+F E+A+KA+ +MNGK L+G+ I+V
Sbjct: 263 LSVKVVTDE-SGKSKGFGFVSFERHEDARKAVDEMNGKELNGKQIYV 308
>gi|222629159|gb|EEE61291.1| hypothetical protein OsJ_15377 [Oryza sativa Japonica Group]
Length = 613
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 33 LISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
L S+ + IM SKG G+V FST EEA +AL +MNGK++ G+ ++V
Sbjct: 339 LFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYV 392
Score = 34.3 bits (77), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 52 RSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN-VRPSRRYNT 97
+SKG+G+V + E AQ A+ +NG L++ + ++V +R R N+
Sbjct: 164 QSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENS 210
>gi|168038795|ref|XP_001771885.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676836|gb|EDQ63314.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 157
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 27/86 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAF FG VT+ II+D+ RS+G+G+V F
Sbjct: 61 LRDAFGSFGTVTD---------------------------VKIILDRDTGRSRGFGFVNF 93
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD 87
++ +EA+ AL +M+G+ L GR I VD
Sbjct: 94 TSPQEAEVALQEMDGRELAGRQIRVD 119
>gi|62955567|ref|NP_001017797.1| cold inducible RNA binding protein [Danio rerio]
gi|62202782|gb|AAH93299.1| Zgc:112425 [Danio rerio]
gi|63100518|gb|AAH95030.1| Zgc:112425 [Danio rerio]
gi|182889498|gb|AAI65256.1| Zgc:112425 protein [Danio rerio]
Length = 185
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 27/86 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAFS++G +T +H + ++ NRS+G+G+VTF
Sbjct: 21 LEDAFSKYGVITN--------------VH-------------VARNRETNRSRGFGFVTF 53
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD 87
++A+ AL MNGK +DGR I VD
Sbjct: 54 ENPDDAKDALEGMNGKSVDGRTIRVD 79
>gi|47223169|emb|CAG11304.1| unnamed protein product [Tetraodon nigroviridis]
Length = 642
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M + RS+G+G+V F+ +AQKA+ +MNG L+G+VI+V R +R L R+
Sbjct: 220 VMKDERGRSRGFGFVNFAHHGDAQKAVDEMNGTELNGKVIYVG--RAQKRLERQGELKRK 277
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 88
SKGYG+V F TEE A +A+ MNG LL+ R +FV N
Sbjct: 135 SKGYGFVHFETEEAANRAIETMNGMLLNDRKVFVGN 170
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 28/35 (80%)
Query: 52 RSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+S+G+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 329 QSRGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 363
>gi|2826811|emb|CAA05727.1| AtGRP2 [Arabidopsis thaliana]
Length = 150
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 29/93 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAF+ FG V + A +I+D+ RS+G+G+V F
Sbjct: 51 LRDAFAHFGDVVD---------------------------AKVIVDRETGRSRGFGFVNF 83
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD--NVRPS 92
+ E A A+++M+GK L+GR I V+ N RPS
Sbjct: 84 NDEGAATAAISEMDGKELNGRHIRVNPANDRPS 116
>gi|403169797|ref|XP_003889581.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375168424|gb|EHS63645.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 715
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M K SKG+G+V FS+ +EA KA+A+MNGK+L + ++V
Sbjct: 399 VMKDEKGTSKGFGFVCFSSPDEATKAVAEMNGKMLGSKPLYV 440
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
SKGYG+V + T E A+ A+ +NG L+ +V+FV P R
Sbjct: 211 SKGYGFVHYVTGESAEAAIKGVNGMQLNDKVVFVGIHVPRR 251
>gi|116791319|gb|ABK25933.1| unknown [Picea sitchensis]
Length = 221
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ A II D+ RS+G+G+++F++ EEA A+ M+GK L GR++ V+
Sbjct: 66 VIEARIIHDRETGRSRGFGFISFTSNEEAAAAITGMDGKDLHGRLVHVN 114
>gi|145348372|ref|XP_001418624.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578854|gb|ABO96917.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 151
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 17 VYFYFKSQPLFPLHYFLISDSF--LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADM 74
VYF S + L + F + + +I D+ RS+G+G+VT S+E EA + +A +
Sbjct: 74 VYFGNLSWGMDHLDLQDLCGEFGSVEDSRLITDRETGRSRGFGFVTMSSEAEADEVVAQL 133
Query: 75 NGKLLDGRVIFVD 87
NG+ +DGRV+ V+
Sbjct: 134 NGQDVDGRVLRVN 146
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 46 MDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS--RRYNTDAPLAR 103
MD+ RS+G+ +VT ++ E+ ++A+A NG +DGR + V + + RR D P+
Sbjct: 1 MDRNTGRSRGFAFVTLASAEDMERAMAATNGVDVDGRELRVSQAQTAGERR---DRPMRM 57
Query: 104 QSAQSPEEN 112
+ P+ N
Sbjct: 58 DGERRPQRN 66
>gi|34851124|gb|AAL13082.1| putative glycine-rich RNA-binding protein [Prunus avium]
Length = 178
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ + II D+ RS+G+G+VTFS E+ + A+ MNG+ LDGR I V+
Sbjct: 34 IIESKIINDRETGRSRGFGFVTFSNEKAMRDAIEGMNGQNLDGRNITVN 82
>gi|82802759|gb|ABB92430.1| PABP3 [Chlorocebus sabaeus]
Length = 635
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV 170
>gi|357451851|ref|XP_003596202.1| RNA-binding protein with serine-rich domain-containing protein
[Medicago truncatula]
gi|355485250|gb|AES66453.1| RNA-binding protein with serine-rich domain-containing protein
[Medicago truncatula]
Length = 415
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
+ + ++MD+ N KGYGYV F T EA+KAL M+G +DG V+ P R+ +
Sbjct: 126 VVSVELVMDRAVNLPKGYGYVHFKTRGEAEKALLYMDGAQIDGNVVKARFTLPPRQKASP 185
Query: 99 APLA 102
P A
Sbjct: 186 PPKA 189
>gi|326503608|dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 33 LISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
L S+ + IM SKG G+V+FST EEA +AL +MNGK++ G+ ++V
Sbjct: 423 LFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMNGKMISGKPLYV 476
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 29 LHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
LH + + + + MD +SKG+G+V + EE AQ A+ +NG L++ + ++V
Sbjct: 226 LHDTFSAFGAILSCKVAMDD-IGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYV 282
>gi|444729178|gb|ELW69605.1| RNA-binding protein 39 [Tupaia chinensis]
Length = 467
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 32 FLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89
++ S + + ++MD RSKGYG++TFS E A+KAL +NG L GR + V +V
Sbjct: 223 IIVQASQIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 280
>gi|30682622|ref|NP_849377.1| glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]
gi|332657934|gb|AEE83334.1| glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]
Length = 153
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 29/93 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAF+ FG V + A +I+D+ RS+G+G+V F
Sbjct: 51 LRDAFAHFGDVVD---------------------------AKVIVDRETGRSRGFGFVNF 83
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD--NVRPS 92
+ E A A+++M+GK L+GR I V+ N RPS
Sbjct: 84 NDEGAATAAISEMDGKELNGRHIRVNPANDRPS 116
>gi|15236359|ref|NP_193121.1| glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]
gi|25090505|sp|Q9SVM8.1|GRP2_ARATH RecName: Full=Glycine-rich RNA-binding protein 2, mitochondrial;
Short=AtGRP2; Flags: Precursor
gi|4455314|emb|CAB36849.1| glycine-rich RNA-binding protein AtGRP2-like [Arabidopsis thaliana]
gi|7268089|emb|CAB78427.1| glycine-rich RNA-binding protein AtGRP2-like [Arabidopsis thaliana]
gi|18252853|gb|AAL62353.1| glycine-rich RNA-binding protein AtGRP2 - like [Arabidopsis
thaliana]
gi|21553749|gb|AAM62842.1| glycine-rich RNA-binding protein AtGRP2-like [Arabidopsis thaliana]
gi|25084267|gb|AAN72208.1| glycine-rich RNA-binding protein AtGRP2 - like [Arabidopsis
thaliana]
gi|332657933|gb|AEE83333.1| glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]
Length = 158
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 29/93 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAF+ FG V + A +I+D+ RS+G+G+V F
Sbjct: 51 LRDAFAHFGDVVD---------------------------AKVIVDRETGRSRGFGFVNF 83
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD--NVRPS 92
+ E A A+++M+GK L+GR I V+ N RPS
Sbjct: 84 NDEGAATAAISEMDGKELNGRHIRVNPANDRPS 116
>gi|340719924|ref|XP_003398394.1| PREDICTED: polyadenylate-binding protein 1-like isoform 4 [Bombus
terrestris]
Length = 612
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
+ +A ++M++G RSKG+G+V FS EEA KA+ +MNG+++ + ++V R+ +
Sbjct: 322 ITSAKVMMEEG--RSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV--ALAQRKEDRK 377
Query: 99 APLARQSAQ 107
A LA Q Q
Sbjct: 378 AHLASQYMQ 386
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
SKGYG+V F TEE A K++ +NG LL+G+ ++V P +
Sbjct: 138 SKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRK 178
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGK-LLDGRVIFV 86
+M K +S+G+G+V F + A++A+ ++NGK + +G+ ++V
Sbjct: 223 VMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYV 265
>gi|145333039|ref|NP_001078385.1| glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]
gi|332657935|gb|AEE83335.1| glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]
Length = 144
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 29/93 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAF+ FG V + A +I+D+ RS+G+G+V F
Sbjct: 51 LRDAFAHFGDVVD---------------------------AKVIVDRETGRSRGFGFVNF 83
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD--NVRPS 92
+ E A A+++M+GK L+GR I V+ N RPS
Sbjct: 84 NDEGAATAAISEMDGKELNGRHIRVNPANDRPS 116
>gi|47933430|gb|AAT39343.1| polyadenylate binding protein [Oikopleura dioica]
Length = 610
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 29/37 (78%)
Query: 50 KNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
K RSKG+G+V FS+ EEA KA+ +MNG++ G+ ++V
Sbjct: 367 KGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYV 403
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D N SKG+G+V + ++E AQ+A+ +NG L++ + +FV
Sbjct: 116 ILSCKVVCDI--NGSKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFV 161
>gi|2331131|gb|AAB66884.1| glycine-rich protein [Oryza sativa Japonica Group]
Length = 162
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ + II D+ RS G+G++TFS+E+ + A+ MNGK LDGR I V+
Sbjct: 34 ILDSKIINDRETGRSLGFGFITFSSEQSMRDAIEGMNGKELDGRNITVN 82
>gi|351725469|ref|NP_001238373.1| glycine-rich RNA-binding protein [Glycine max]
gi|5726567|gb|AAD48471.1|AF169205_1 glycine-rich RNA-binding protein [Glycine max]
Length = 160
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 27/86 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L AFSQ+G++ E II D+ RS+G+G+VTF
Sbjct: 24 LERAFSQYGEIVE---------------------------TKIINDRETGRSRGFGFVTF 56
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD 87
++E+ + A+ MNG+ LDGR I V+
Sbjct: 57 ASEQSMKDAIGAMNGQNLDGRNITVN 82
>gi|332255488|ref|XP_003276864.1| PREDICTED: putative RNA-binding protein 3 isoform 1 [Nomascus
leucogenys]
Length = 157
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
++ D+ RS+G+G++TF+ E A A+ MNG+ LDGR I VD+ S R
Sbjct: 37 VVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHAGKSAR 87
>gi|156060903|ref|XP_001596374.1| hypothetical protein SS1G_02594 [Sclerotinia sclerotiorum 1980]
gi|154699998|gb|EDN99736.1| hypothetical protein SS1G_02594 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 359
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 9/62 (14%)
Query: 26 LFPLHYFLISDSFLFAATIIMDKGKNR-SKGYGYVTFSTEEEAQKALADMNGKLLDGRVI 84
L P+ F++ + +G+ R +G+G+VT S+EE+ QKA+A+MNGK ++GR I
Sbjct: 268 LRPIPRFMVKK--------LQARGEPRKGRGFGFVTLSSEEQQQKAVAEMNGKEIEGREI 319
Query: 85 FV 86
V
Sbjct: 320 AV 321
>gi|126663185|ref|ZP_01734183.1| RNA binding protein [Flavobacteria bacterium BAL38]
gi|126624843|gb|EAZ95533.1| RNA binding protein [Flavobacteria bacterium BAL38]
Length = 111
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ II DK RSKG+G+V + + EAQKA+ ++NG ++GR I V+ P
Sbjct: 29 SVKIISDKFTGRSKGFGFVEMANDAEAQKAIDELNGGTIEGRKIVVNKSEP 79
>gi|335775987|gb|AEH58755.1| polyadenylate-binding protein 1-like protein [Equus caballus]
Length = 510
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 194 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 239
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 96 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 137
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
A ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 1 ACKVVRDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 44
>gi|395830356|ref|XP_003788297.1| PREDICTED: RNA-binding protein 39 [Otolemur garnettii]
Length = 453
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 32 FLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89
++ S + + ++MD RSKGYG++TFS E A+KAL +NG L GR + V +V
Sbjct: 198 IIVQASQIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 255
>gi|395745189|ref|XP_002824146.2| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Pongo
abelii]
Length = 636
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 30/42 (71%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYV 263
>gi|115473341|ref|NP_001060269.1| Os07g0615400 [Oryza sativa Japonica Group]
gi|23237933|dbj|BAC16506.1| putative oligouridylate binding protein [Oryza sativa Japonica
Group]
gi|113611805|dbj|BAF22183.1| Os07g0615400 [Oryza sativa Japonica Group]
gi|215737207|dbj|BAG96136.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767365|dbj|BAG99593.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222637457|gb|EEE67589.1| hypothetical protein OsJ_25126 [Oryza sativa Japonica Group]
Length = 427
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 10/64 (15%)
Query: 34 ISDSFLFA----------ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRV 83
++DS LFA A ++ D+ RS+GYG+V+F +++AQ A+ D+NG+ L R
Sbjct: 161 VTDSALFAFFSGYSSCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQ 220
Query: 84 IFVD 87
I +
Sbjct: 221 IRCN 224
>gi|335279916|ref|XP_003353461.1| PREDICTED: putative RNA-binding protein 3-like [Sus scrofa]
Length = 156
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
I+ D+ RS+G+G++TF+ E A + MNG+ LDGR I VD+ S
Sbjct: 37 IVKDRETQRSRGFGFITFTNPEHASNVMRAMNGESLDGRQIHVDHAGKS 85
>gi|297733663|emb|CBI14910.3| unnamed protein product [Vitis vinifera]
Length = 306
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSR 93
+ A ++ D+ RS+G+G+VT S++ E + A+A +G+ LDGR I V+ RP R
Sbjct: 247 VVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAATDGQTLDGRTIRVNVAEERPRR 303
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 34/50 (68%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
A +I ++ +RS+G+G+V+ ST EEA+KA+ + LDGR++ V+ P
Sbjct: 156 AEVIYNRETDRSRGFGFVSMSTVEEAEKAVDMFHRYELDGRLLTVNKAAP 205
>gi|145334517|ref|NP_001078604.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332005307|gb|AED92690.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 421
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 24 QPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRV 83
Q F +HY S + A ++ D RSKGYG+V F+ E E +A+A+MNG R
Sbjct: 133 QETFRVHY-----SSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRP 187
Query: 84 IFVDNVRPSR 93
+ + P +
Sbjct: 188 MRISAATPKK 197
>gi|125541605|gb|EAY88000.1| hypothetical protein OsI_09422 [Oryza sativa Indica Group]
Length = 318
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ A ++ D RS+GYG+V +ST+EE +AL+ +NG L+GR I V+
Sbjct: 264 VVGARVLYDGETGRSRGYGFVCYSTKEEMDEALSSLNGTELEGREIRVN 312
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVI---FVDNVRP 91
++ D+ RS+G+ +VT ST E+ ++ + +++G L GR + F D +P
Sbjct: 178 VLYDRATGRSRGFAFVTMSTIEDCEQVIKNLDGSLYSGRTMRVNFADKPKP 228
>gi|340719920|ref|XP_003398392.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
terrestris]
Length = 609
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
+ +A ++M++G RSKG+G+V FS EEA KA+ +MNG+++ + ++V + R+ +
Sbjct: 301 ITSAKVMMEEG--RSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQ--RKEDRK 356
Query: 99 APLARQSAQ 107
A LA Q Q
Sbjct: 357 AHLASQYMQ 365
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
SKGYG+V F TEE A K++ +NG LL+G+ +F +
Sbjct: 138 SKGYGFVHFETEEAANKSIDRVNGMLLNGKKLFTN 172
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGK-LLDGRVIFV 86
+M K +S+G+G+V F + A++A+ ++NGK + +G+ ++V
Sbjct: 202 VMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYV 244
>gi|225456840|ref|XP_002278832.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Vitis vinifera]
Length = 327
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSR 93
+ A ++ D+ RS+G+G+VT S++ E + A+A +G+ LDGR I V+ RP R
Sbjct: 268 VVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAATDGQTLDGRTIRVNVAEERPRR 324
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 34/50 (68%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
A +I ++ +RS+G+G+V+ ST EEA+KA+ + LDGR++ V+ P
Sbjct: 177 AEVIYNRETDRSRGFGFVSMSTVEEAEKAVDMFHRYELDGRLLTVNKAAP 226
>gi|13096978|gb|AAH03283.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 660
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G+ IFV R ++ A L R+
Sbjct: 222 VMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|426374960|ref|XP_004054321.1| PREDICTED: polyadenylate-binding protein 3 [Gorilla gorilla
gorilla]
Length = 631
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV 170
>gi|383417509|gb|AFH31968.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 456
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 219 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 260
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 317 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 362
>gi|148698436|gb|EDL30383.1| mCG5546, isoform CRA_b [Mus musculus]
Length = 580
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G+ IFV R ++ A L R+
Sbjct: 239 VMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVG--RAQKKVERQAELKRK 296
Query: 105 SAQSPEE 111
Q +E
Sbjct: 297 FEQLKQE 303
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 337 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 382
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 142 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 187
>gi|148670144|gb|EDL02091.1| RIKEN cDNA 4932702K14 [Mus musculus]
Length = 642
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A + M+ G RSKG+G+V FS+ EEA KA+ +MNGK++ + ++V
Sbjct: 330 ITSAKVTMEGG--RSKGFGFVCFSSPEEATKAVTEMNGKIVATKPLYV 375
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
+ + ++ D+ N SKGYG+V F T+EEA++A+ MNG L+ +FV + SRR
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGRFK-SRR 177
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+A+KA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYV 263
>gi|145333041|ref|NP_001078386.1| glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]
gi|332657936|gb|AEE83336.1| glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]
Length = 129
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 29/93 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAF+ FG V + A +I+D+ RS+G+G+V F
Sbjct: 51 LRDAFAHFGDVVD---------------------------AKVIVDRETGRSRGFGFVNF 83
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD--NVRPS 92
+ E A A+++M+GK L+GR I V+ N RPS
Sbjct: 84 NDEGAATAAISEMDGKELNGRHIRVNPANDRPS 116
>gi|91095037|ref|XP_975975.1| PREDICTED: similar to poly A binding protein isoform 4 [Tribolium
castaneum]
gi|270014772|gb|EFA11220.1| hypothetical protein TcasGA2_TC005185 [Tribolium castaneum]
Length = 607
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ NRSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 322 ITSAKVMMED--NRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 367
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
SKGYG+V F TEE A K++ +NG LL+G+ ++V P +
Sbjct: 138 SKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRK 178
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGK-LLDGRVIFV 86
IM K +SKG+G+V F + E A+ A+ +NGK ++DG+ ++V
Sbjct: 223 IMSKDDGKSKGFGFVAFESPEAAETAVEALNGKEIIDGKPLYV 265
>gi|402697293|gb|AFQ90834.1| polyA-binding protein cytoplasmic 1, partial [Oscaecilia
ochrocephala]
Length = 177
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV R R +
Sbjct: 22 ILSCKVVCDE--NGSKGYGFVXFETQEAAERAIEKMNGMLLNDRKVFVG--RFKSRKERE 77
Query: 99 APLARQSAQ 107
A L ++ +
Sbjct: 78 AELGARAKE 86
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V+F E+AQKA+ MNGK L+G+ I+V R ++ L R+
Sbjct: 119 VMTDESGKSKGFGFVSFERHEDAQKAVDXMNGKELNGKXIYVG--RAQKKVERQTELKRK 176
>gi|260221864|emb|CBA30852.1| Putative RNA-binding protein rbpB [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 124
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ +A ++MD+ RSKG+ +V ST AQ A+ +NG+ +DGR I V+ RP
Sbjct: 55 VTSAKVMMDRDTGRSKGFAFVEMSTPAFAQAAIDGLNGQSVDGRSIVVNLARP 107
>gi|15239715|ref|NP_197436.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|75331115|sp|Q8VXZ9.1|R47BP_ARATH RecName: Full=Polyadenylate-binding protein RBP47B';
Short=Poly(A)-binding protein RBP47B'; AltName:
Full=RNA-binding protein 47B'; Short=AtRBP47B prime;
Short=AtRBP47B'
gi|18377731|gb|AAL67015.1| putative DNA binding protein ACBF [Arabidopsis thaliana]
gi|21281189|gb|AAM45052.1| putative DNA binding protein ACBF [Arabidopsis thaliana]
gi|332005306|gb|AED92689.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 425
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 24 QPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRV 83
Q F +HY S + A ++ D RSKGYG+V F+ E E +A+A+MNG R
Sbjct: 133 QETFRVHY-----SSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRP 187
Query: 84 IFVDNVRPSR 93
+ + P +
Sbjct: 188 MRISAATPKK 197
>gi|380019828|ref|XP_003693803.1| PREDICTED: polyadenylate-binding protein 1-like [Apis florea]
Length = 630
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
+ +A ++M++G RSKG+G+V FS EEA KA+ +MNG+++ + ++V R+ +
Sbjct: 322 ITSAKVMMEEG--RSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV--ALAQRKEDRK 377
Query: 99 APLARQSAQ 107
A LA Q Q
Sbjct: 378 AHLASQYMQ 386
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
SKGYG+V F TEE A K++ +NG LL+G+ ++V P +
Sbjct: 138 SKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRK 178
Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGK-LLDGRVIFV 86
+M K +S+G+G+V F + A++A+ ++NGK + +G+ ++V
Sbjct: 223 VMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYV 265
>gi|82802753|gb|ABB92427.1| PABP3 [Gorilla gorilla]
Length = 630
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV 170
>gi|693937|emb|CAA88401.1| polyadenylate binding protein II [Homo sapiens]
Length = 522
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 100 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 145
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 197 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 238
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 295 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 340
>gi|383417507|gb|AFH31967.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|383417511|gb|AFH31969.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 459
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>gi|357121988|ref|XP_003562698.1| PREDICTED: nucleolysin TIAR-like [Brachypodium distachyon]
Length = 427
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 11/65 (16%)
Query: 34 ISDSFLFA-----------ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGR 82
++DS LFA A ++ D+ RS+GYG+V+F +++AQ A+ D+NG+ L R
Sbjct: 158 VTDSALFAFFSGYSSSCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGNR 217
Query: 83 VIFVD 87
I +
Sbjct: 218 QIRCN 222
>gi|218200015|gb|EEC82442.1| hypothetical protein OsI_26865 [Oryza sativa Indica Group]
Length = 427
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 10/61 (16%)
Query: 34 ISDSFLFA----------ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRV 83
++DS LFA A ++ D+ RS+GYG+V+F +++AQ A+ D+NG+ L R
Sbjct: 161 VTDSALFAFFSGYSSCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQ 220
Query: 84 I 84
I
Sbjct: 221 I 221
>gi|255652857|ref|NP_001157308.1| poly(A) binding protein, cytoplasmic 3 [Mus musculus]
gi|12855391|dbj|BAB30319.1| unnamed protein product [Mus musculus]
gi|26325704|dbj|BAC26606.1| unnamed protein product [Mus musculus]
Length = 643
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A + M+ G RSKG+G+V FS+ EEA KA+ +MNGK++ + ++V
Sbjct: 330 ITSAKVTMEGG--RSKGFGFVCFSSPEEATKAVTEMNGKIVATKPLYV 375
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
+ + ++ D+ N SKGYG+V F T+EEA++A+ MNG L+ +FV + SRR
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGRFK-SRR 177
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+A+KA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYV 263
>gi|34419622|ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus]
gi|33991671|gb|AAH56432.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
gi|148698437|gb|EDL30384.1| mCG5546, isoform CRA_c [Mus musculus]
Length = 660
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G+ IFV R ++ A L R+
Sbjct: 222 VMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>gi|72534835|ref|NP_001026846.1| poly A binding protein, cytoplasmic 1 a [Danio rerio]
gi|71534060|gb|AAH99992.1| Poly A binding protein, cytoplasmic 1 a [Danio rerio]
Length = 634
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV 170
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQ+A+ +MNGK ++G+ ++V
Sbjct: 222 VMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYV 263
>gi|115449577|ref|NP_001048500.1| Os02g0815200 [Oryza sativa Japonica Group]
gi|47847880|dbj|BAD21673.1| putative RNA-binding protein RNP1 precursor [Oryza sativa Japonica
Group]
gi|47848169|dbj|BAD21996.1| putative RNA-binding protein RNP1 precursor [Oryza sativa Japonica
Group]
gi|113538031|dbj|BAF10414.1| Os02g0815200 [Oryza sativa Japonica Group]
gi|125584133|gb|EAZ25064.1| hypothetical protein OsJ_08857 [Oryza sativa Japonica Group]
gi|215695143|dbj|BAG90334.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737594|dbj|BAG96724.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 316
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ A ++ D RS+GYG+V +ST+EE +AL+ +NG L+GR I V+
Sbjct: 262 VVGARVLYDGETGRSRGYGFVCYSTKEEMDEALSSLNGTELEGREIRVN 310
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVI---FVDNVRP 91
++ D+ RS+G+ +VT ST E+ ++ + +++G L GR + F D +P
Sbjct: 176 VLYDRATGRSRGFAFVTMSTIEDCEQVIKNLDGSLYSGRTMRVNFADKPKP 226
>gi|261862339|ref|NP_001159882.1| putative RNA-binding protein 3 isoform 2 [Mus musculus]
gi|261862342|ref|NP_001159883.1| putative RNA-binding protein 3 isoform 2 [Mus musculus]
gi|6093936|sp|O89086.1|RBM3_MOUSE RecName: Full=Putative RNA-binding protein 3; AltName:
Full=RNA-binding motif protein 3
gi|3395381|dbj|BAA32060.1| rbm3 [Mus musculus]
gi|12834559|dbj|BAB22957.1| unnamed protein product [Mus musculus]
gi|12840849|dbj|BAB24981.1| unnamed protein product [Mus musculus]
gi|13879226|gb|AAH06580.1| Rbm3 protein [Mus musculus]
gi|15983757|gb|AAL10707.1| RNA-binding motif protein 3 [Mus musculus]
gi|74180334|dbj|BAE32335.1| unnamed protein product [Mus musculus]
gi|74198712|dbj|BAE39828.1| unnamed protein product [Mus musculus]
gi|74228699|dbj|BAE21846.1| unnamed protein product [Mus musculus]
gi|76780243|gb|AAI06177.1| Rbm3 protein [Mus musculus]
gi|148702004|gb|EDL33951.1| mCG116386, isoform CRA_a [Mus musculus]
gi|148702009|gb|EDL33956.1| mCG116386, isoform CRA_a [Mus musculus]
Length = 153
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
++ D+ RS+G+G++TF+ E A A+ MNG+ LDGR I VD+ S
Sbjct: 37 VVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKS 85
>gi|224128992|ref|XP_002328863.1| predicted protein [Populus trichocarpa]
gi|118482403|gb|ABK93124.1| unknown [Populus trichocarpa]
gi|222839293|gb|EEE77630.1| predicted protein [Populus trichocarpa]
Length = 131
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 27/85 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAFS FG+VTE A +I D+ RS+G+G+V++
Sbjct: 52 LKDAFSGFGEVTE---------------------------ARVITDRDTGRSRGFGFVSY 84
Query: 62 STEEEAQKALADMNGKLLDGRVIFV 86
+ E A +AL+ M+G+ L GR I V
Sbjct: 85 ESTESASEALSAMDGQELGGRNIRV 109
>gi|189499100|ref|YP_001958570.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides BS1]
gi|189494541|gb|ACE03089.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides BS1]
Length = 90
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 27/86 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L+DAF+QFGQV A IIMDK RSKG+G+V
Sbjct: 17 LSDAFAQFGQVDR---------------------------ANIIMDKETGRSKGFGFVEM 49
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD 87
++EAQ A+ ++ L+GR I V+
Sbjct: 50 PNDDEAQNAIDSLHDSDLNGRSIKVN 75
>gi|410255528|gb|JAA15731.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
Length = 157
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
++ D+ RS+G+G++TF+ E A A+ MNG+ LDGR I VD+ S R
Sbjct: 37 VVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHAGKSAR 87
>gi|357137588|ref|XP_003570382.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 305
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 6/68 (8%)
Query: 33 LISDSF-----LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+++D+F + A ++ D RS+GYG+V +ST+EE +A+ +NG ++GR I V
Sbjct: 239 MLTDAFQQCGDVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIETLNGTEIEGREIRV- 297
Query: 88 NVRPSRRY 95
N+ +RY
Sbjct: 298 NLALGKRY 305
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
++ D+ RS+G+ +VT ST E+ ++ + +++G L GR + V+
Sbjct: 164 VLYDRTTGRSRGFAFVTMSTLEDCERVIKNLDGTLYSGRTMRVN 207
>gi|340719922|ref|XP_003398393.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
terrestris]
Length = 621
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
+ +A ++M++G RSKG+G+V FS EEA KA+ +MNG+++ + ++V R+ +
Sbjct: 322 ITSAKVMMEEG--RSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV--ALAQRKEDRK 377
Query: 99 APLARQSAQ 107
A LA Q Q
Sbjct: 378 AHLASQYMQ 386
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
SKGYG+V F TEE A K++ +NG LL+G+ ++V P +
Sbjct: 138 SKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRK 178
Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGK-LLDGRVIFV 86
+M K +S+G+G+V F + A++A+ ++NGK + +G+ ++V
Sbjct: 223 VMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYV 265
>gi|37497112|ref|NP_058089.2| putative RNA-binding protein 3 isoform 1 [Mus musculus]
gi|261862337|ref|NP_001159881.1| putative RNA-binding protein 3 isoform 1 [Mus musculus]
gi|26340316|dbj|BAC33821.1| unnamed protein product [Mus musculus]
gi|26352956|dbj|BAC40108.1| unnamed protein product [Mus musculus]
gi|37589528|gb|AAH59098.1| Rbm3 protein [Mus musculus]
Length = 154
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
++ D+ RS+G+G++TF+ E A A+ MNG+ LDGR I VD+ S
Sbjct: 37 VVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKS 85
>gi|395818359|ref|XP_003782600.1| PREDICTED: polyadenylate-binding protein 1, partial [Otolemur
garnettii]
Length = 539
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 288 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 333
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 105 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 138
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQ MNGK L+G+ I+V
Sbjct: 190 VMTDESGKSKGFGFVSFERHEDAQXXXXXMNGKELNGKQIYV 231
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.136 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,721,539,778
Number of Sequences: 23463169
Number of extensions: 63852450
Number of successful extensions: 181962
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9810
Number of HSP's successfully gapped in prelim test: 1292
Number of HSP's that attempted gapping in prelim test: 162579
Number of HSP's gapped (non-prelim): 20460
length of query: 112
length of database: 8,064,228,071
effective HSP length: 80
effective length of query: 32
effective length of database: 6,187,174,551
effective search space: 197989585632
effective search space used: 197989585632
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 69 (31.2 bits)