Query 033751
Match_columns 112
No_of_seqs 114 out of 1397
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 05:53:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033751.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033751hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.6 1E-14 2.2E-19 102.5 10.8 67 1-94 50-116 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 3.6E-14 7.8E-19 109.8 9.2 66 2-94 286-351 (352)
3 KOG0113 U1 small nuclear ribon 99.4 3.4E-13 7.4E-18 104.1 8.2 66 2-94 118-183 (335)
4 PF13893 RRM_5: RNA recognitio 99.4 1.3E-12 2.8E-17 77.3 8.0 56 2-89 1-56 (56)
5 smart00361 RRM_1 RNA recogniti 99.4 1.1E-12 2.4E-17 81.3 7.9 59 2-87 5-70 (70)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 7.6E-13 1.7E-17 102.4 8.7 67 1-94 19-85 (352)
7 KOG0122 Translation initiation 99.4 6.4E-13 1.4E-17 100.3 7.6 64 2-92 206-269 (270)
8 KOG4207 Predicted splicing fac 99.4 2E-13 4.2E-18 101.4 4.5 62 2-90 30-91 (256)
9 KOG0148 Apoptosis-promoting RN 99.4 6.9E-13 1.5E-17 101.6 6.8 69 2-97 79-147 (321)
10 TIGR01659 sex-lethal sex-letha 99.3 2.1E-12 4.6E-17 102.0 7.1 65 1-92 123-187 (346)
11 PF00076 RRM_1: RNA recognitio 99.3 1.1E-11 2.4E-16 74.6 7.9 56 2-85 15-70 (70)
12 TIGR01645 half-pint poly-U bin 99.3 9.9E-12 2.1E-16 104.3 9.9 67 1-94 220-286 (612)
13 smart00360 RRM RNA recognition 99.3 4.3E-11 9.4E-16 70.4 7.5 59 2-87 13-71 (71)
14 KOG0117 Heterogeneous nuclear 99.2 1.3E-11 2.9E-16 99.5 6.5 66 2-94 100-166 (506)
15 KOG0149 Predicted RNA-binding 99.2 9.4E-12 2E-16 93.4 5.1 61 2-90 29-89 (247)
16 TIGR01659 sex-lethal sex-letha 99.2 4.9E-11 1.1E-15 94.3 8.9 64 2-92 210-275 (346)
17 TIGR01645 half-pint poly-U bin 99.2 4.1E-11 8.8E-16 100.6 7.9 62 2-90 124-185 (612)
18 KOG0125 Ataxin 2-binding prote 99.2 3.2E-11 6.9E-16 94.4 6.6 62 2-92 113-174 (376)
19 TIGR01628 PABP-1234 polyadenyl 99.2 1.4E-10 3.1E-15 95.5 9.1 63 2-91 17-79 (562)
20 TIGR01628 PABP-1234 polyadenyl 99.2 1.1E-10 2.4E-15 96.1 8.4 63 2-92 302-364 (562)
21 TIGR01622 SF-CC1 splicing fact 99.2 2E-10 4.3E-15 92.1 9.1 62 2-90 203-264 (457)
22 KOG0111 Cyclophilin-type pepti 99.2 3.3E-11 7.1E-16 90.5 4.2 68 2-96 27-94 (298)
23 TIGR01642 U2AF_lg U2 snRNP aux 99.1 2.1E-10 4.5E-15 93.0 8.9 65 1-92 311-375 (509)
24 KOG0145 RNA-binding protein EL 99.1 1E-10 2.2E-15 89.7 6.5 67 2-95 58-124 (360)
25 PF14259 RRM_6: RNA recognitio 99.1 5.1E-10 1.1E-14 68.2 7.6 56 2-85 15-70 (70)
26 smart00362 RRM_2 RNA recogniti 99.1 5.7E-10 1.2E-14 65.9 7.4 57 2-87 16-72 (72)
27 KOG0130 RNA-binding protein RB 99.1 1.8E-10 3.8E-15 81.0 5.7 65 2-93 89-153 (170)
28 KOG0144 RNA-binding protein CU 99.1 1.8E-10 3.8E-15 92.9 5.2 82 2-110 51-138 (510)
29 KOG0107 Alternative splicing f 99.1 5.2E-10 1.1E-14 81.2 6.9 61 2-94 27-87 (195)
30 COG0724 RNA-binding proteins ( 99.1 8.3E-10 1.8E-14 79.1 7.7 63 2-91 132-194 (306)
31 TIGR01622 SF-CC1 splicing fact 99.0 7.5E-10 1.6E-14 88.7 8.2 62 2-91 106-167 (457)
32 KOG0121 Nuclear cap-binding pr 99.0 5.3E-10 1.1E-14 77.8 5.8 63 1-90 52-114 (153)
33 PLN03120 nucleic acid binding 99.0 2.3E-09 5.1E-14 81.9 9.7 60 2-92 21-80 (260)
34 KOG0145 RNA-binding protein EL 99.0 1.4E-09 3.1E-14 83.5 7.8 63 2-91 295-357 (360)
35 KOG0148 Apoptosis-promoting RN 99.0 1.9E-09 4.2E-14 82.8 7.5 59 2-93 181-239 (321)
36 KOG0146 RNA-binding protein ET 99.0 4.2E-10 9E-15 86.6 3.8 67 2-95 302-368 (371)
37 TIGR01648 hnRNP-R-Q heterogene 99.0 1.4E-09 3.1E-14 90.9 7.0 61 2-90 75-136 (578)
38 PLN03213 repressor of silencin 99.0 1.6E-09 3.5E-14 89.1 6.9 59 2-91 27-87 (759)
39 TIGR01642 U2AF_lg U2 snRNP aux 98.9 3.4E-09 7.3E-14 85.9 8.2 63 2-91 436-501 (509)
40 KOG0144 RNA-binding protein CU 98.9 1.4E-09 3E-14 87.8 5.7 66 2-95 141-209 (510)
41 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.9 3E-09 6.6E-14 86.8 7.8 59 1-91 292-350 (481)
42 KOG0126 Predicted RNA-binding 98.9 1.5E-10 3.3E-15 84.6 0.2 60 3-89 53-112 (219)
43 cd00590 RRM RRM (RNA recogniti 98.9 1E-08 2.3E-13 60.7 8.0 59 2-88 16-74 (74)
44 KOG0108 mRNA cleavage and poly 98.9 1.5E-09 3.2E-14 88.3 5.5 66 2-94 35-100 (435)
45 KOG0124 Polypyrimidine tract-b 98.9 1.2E-09 2.6E-14 87.1 4.3 61 1-88 129-189 (544)
46 KOG0131 Splicing factor 3b, su 98.9 3E-09 6.4E-14 77.7 4.8 62 2-90 26-87 (203)
47 KOG0127 Nucleolar protein fibr 98.9 5.3E-09 1.1E-13 86.5 6.8 68 2-97 134-201 (678)
48 KOG4208 Nucleolar RNA-binding 98.8 6E-09 1.3E-13 77.1 5.9 51 42-92 80-130 (214)
49 KOG0147 Transcriptional coacti 98.8 5.7E-09 1.2E-13 85.9 5.7 65 1-92 294-358 (549)
50 KOG0123 Polyadenylate-binding 98.8 1.3E-08 2.8E-13 81.3 6.7 64 1-94 14-77 (369)
51 KOG0127 Nucleolar protein fibr 98.8 1.3E-08 2.9E-13 84.2 5.7 69 1-96 21-89 (678)
52 PLN03121 nucleic acid binding 98.8 3.4E-08 7.4E-13 74.8 7.5 59 1-90 21-79 (243)
53 KOG0117 Heterogeneous nuclear 98.8 1.3E-08 2.8E-13 82.4 5.5 60 1-95 275-334 (506)
54 KOG0105 Alternative splicing f 98.7 3.7E-08 8E-13 72.5 7.1 61 2-92 23-83 (241)
55 TIGR01648 hnRNP-R-Q heterogene 98.7 4E-08 8.7E-13 82.4 8.1 59 1-94 249-309 (578)
56 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.7 4.6E-08 1E-12 79.9 8.1 59 2-91 113-173 (481)
57 KOG0109 RNA-binding protein LA 98.7 2.8E-08 6E-13 77.2 6.3 68 2-104 19-86 (346)
58 KOG0415 Predicted peptidyl pro 98.7 1.7E-08 3.7E-13 80.2 5.3 63 2-91 256-318 (479)
59 KOG0123 Polyadenylate-binding 98.7 4.6E-08 1E-12 78.1 7.2 65 2-96 93-157 (369)
60 KOG0146 RNA-binding protein ET 98.7 2.9E-08 6.2E-13 76.6 5.6 64 2-93 36-102 (371)
61 KOG0109 RNA-binding protein LA 98.7 2.2E-08 4.8E-13 77.7 4.9 63 2-99 95-157 (346)
62 KOG0131 Splicing factor 3b, su 98.7 3.5E-08 7.7E-13 72.1 4.8 70 1-96 112-181 (203)
63 KOG4206 Spliceosomal protein s 98.6 1.4E-07 3.1E-12 70.5 5.6 62 2-93 30-91 (221)
64 KOG4661 Hsp27-ERE-TATA-binding 98.5 5.1E-07 1.1E-11 75.6 7.5 63 2-91 422-484 (940)
65 KOG0124 Polypyrimidine tract-b 98.5 2.4E-07 5.2E-12 74.1 5.3 63 2-91 227-289 (544)
66 KOG0110 RNA-binding protein (R 98.5 1.3E-07 2.8E-12 80.0 3.4 65 2-93 630-694 (725)
67 KOG0114 Predicted RNA-binding 98.4 1.1E-06 2.4E-11 59.4 5.7 59 3-91 36-94 (124)
68 KOG4205 RNA-binding protein mu 98.3 3.3E-07 7.1E-12 71.9 3.0 66 2-95 23-88 (311)
69 KOG0110 RNA-binding protein (R 98.3 1.8E-06 3.9E-11 73.2 7.4 62 2-90 532-596 (725)
70 KOG0226 RNA-binding proteins [ 98.3 2.9E-07 6.2E-12 70.4 2.2 52 42-93 220-271 (290)
71 KOG4212 RNA-binding protein hn 98.2 3.8E-06 8.2E-11 68.6 6.3 49 42-91 75-123 (608)
72 KOG4209 Splicing factor RNPS1, 98.1 6.9E-06 1.5E-10 62.0 5.8 48 42-90 131-178 (231)
73 KOG4205 RNA-binding protein mu 98.1 3.2E-06 6.9E-11 66.4 4.1 66 2-95 114-179 (311)
74 KOG0147 Transcriptional coacti 97.9 1.7E-05 3.6E-10 65.8 4.7 61 2-90 196-256 (549)
75 KOG2314 Translation initiation 97.8 4.1E-05 8.8E-10 64.1 6.2 65 2-94 81-146 (698)
76 KOG0533 RRM motif-containing p 97.8 6.9E-05 1.5E-09 57.0 6.4 61 2-90 100-160 (243)
77 KOG0106 Alternative splicing f 97.7 4.4E-05 9.6E-10 57.2 3.8 57 2-93 18-74 (216)
78 KOG0153 Predicted RNA-binding 97.5 0.00034 7.5E-09 55.6 7.0 57 2-91 245-302 (377)
79 KOG0116 RasGAP SH3 binding pro 97.5 0.00032 7E-09 57.1 6.8 63 1-91 304-366 (419)
80 KOG4212 RNA-binding protein hn 97.5 0.00014 3.1E-09 59.6 4.3 57 1-89 552-608 (608)
81 KOG1190 Polypyrimidine tract-b 97.4 0.00051 1.1E-08 55.8 6.9 58 2-91 315-372 (492)
82 KOG0132 RNA polymerase II C-te 97.4 0.00035 7.7E-09 60.3 6.3 61 2-95 438-498 (894)
83 KOG4660 Protein Mei2, essentia 97.3 0.0001 2.2E-09 61.3 1.7 52 2-85 92-143 (549)
84 KOG1995 Conserved Zn-finger pr 97.3 0.00021 4.5E-09 56.8 3.1 52 42-93 104-155 (351)
85 KOG0120 Splicing factor U2AF, 97.3 0.0002 4.4E-09 59.3 2.9 52 42-93 319-370 (500)
86 KOG0120 Splicing factor U2AF, 97.2 0.00098 2.1E-08 55.4 6.8 62 2-90 426-490 (500)
87 COG5175 MOT2 Transcriptional r 97.2 0.00082 1.8E-08 53.7 5.6 33 58-90 169-201 (480)
88 KOG1548 Transcription elongati 97.2 0.0014 3E-08 52.3 6.8 71 2-92 151-221 (382)
89 KOG1457 RNA binding protein (c 97.0 0.0032 7E-08 47.9 7.1 43 53-95 76-121 (284)
90 KOG4454 RNA binding protein (R 97.0 0.00068 1.5E-08 51.3 3.0 59 2-89 26-84 (267)
91 PF04059 RRM_2: RNA recognitio 96.9 0.0034 7.4E-08 41.6 5.5 49 42-90 33-85 (97)
92 PF08952 DUF1866: Domain of un 96.8 0.0061 1.3E-07 43.2 6.7 54 2-91 53-106 (146)
93 KOG1548 Transcription elongati 96.7 0.0082 1.8E-07 47.9 7.3 44 51-94 311-354 (382)
94 KOG0151 Predicted splicing reg 96.6 0.0047 1E-07 53.3 5.9 62 2-90 191-255 (877)
95 PF05172 Nup35_RRM: Nup53/35/4 96.5 0.011 2.3E-07 39.4 5.8 36 54-90 54-90 (100)
96 KOG4210 Nuclear localization s 96.5 0.0023 5.1E-08 49.7 2.8 56 42-98 215-270 (285)
97 KOG0106 Alternative splicing f 96.4 0.0029 6.4E-08 47.5 2.8 37 53-89 132-168 (216)
98 PF11608 Limkain-b1: Limkain b 96.3 0.012 2.7E-07 38.3 5.1 37 54-90 39-75 (90)
99 KOG2202 U2 snRNP splicing fact 96.3 0.0021 4.6E-08 49.2 1.7 41 50-90 106-146 (260)
100 KOG1456 Heterogeneous nuclear 95.3 0.057 1.2E-06 43.9 6.2 37 56-92 161-199 (494)
101 KOG4206 Spliceosomal protein s 95.3 0.045 9.7E-07 41.2 5.1 58 1-90 162-220 (221)
102 KOG1456 Heterogeneous nuclear 95.2 0.072 1.6E-06 43.3 6.5 58 1-90 304-361 (494)
103 KOG1996 mRNA splicing factor [ 95.2 0.071 1.5E-06 42.1 6.2 61 2-89 303-364 (378)
104 PF14605 Nup35_RRM_2: Nup53/35 95.2 0.042 9.2E-07 32.2 3.9 37 2-71 17-53 (53)
105 PF08777 RRM_3: RNA binding mo 95.0 0.035 7.7E-07 37.0 3.7 54 2-88 18-76 (105)
106 KOG4211 Splicing factor hnRNP- 94.4 0.088 1.9E-06 43.8 5.2 46 44-90 39-84 (510)
107 KOG4285 Mitotic phosphoprotein 94.0 0.15 3.2E-06 40.4 5.5 56 1-90 212-268 (350)
108 KOG0128 RNA-binding protein SA 94.0 0.033 7.2E-07 48.8 2.0 62 2-91 753-814 (881)
109 KOG4307 RNA binding protein RB 93.9 0.17 3.7E-06 44.0 6.0 44 45-88 900-943 (944)
110 KOG1190 Polypyrimidine tract-b 93.6 0.12 2.7E-06 42.3 4.5 57 2-90 167-226 (492)
111 KOG1855 Predicted RNA-binding 93.2 0.036 7.8E-07 45.5 0.9 60 2-78 248-310 (484)
112 PF04847 Calcipressin: Calcipr 92.6 0.47 1E-05 34.7 6.0 38 55-92 32-71 (184)
113 KOG2135 Proteins containing th 92.4 0.18 3.8E-06 42.0 3.8 60 2-95 390-449 (526)
114 KOG2068 MOT2 transcription fac 91.0 0.1 2.2E-06 41.5 1.0 35 56-90 127-161 (327)
115 KOG0112 Large RNA-binding prot 90.5 0.37 8.1E-06 42.8 4.1 58 2-92 472-531 (975)
116 KOG4211 Splicing factor hnRNP- 90.4 0.58 1.3E-05 39.1 4.9 46 42-89 134-179 (510)
117 PF08675 RNA_bind: RNA binding 89.1 1.1 2.5E-05 29.1 4.6 39 2-75 25-63 (87)
118 KOG4574 RNA-binding protein (c 88.3 0.47 1E-05 42.1 3.1 64 2-98 315-380 (1007)
119 PF03880 DbpA: DbpA RNA bindin 88.0 1.5 3.2E-05 27.0 4.5 33 56-89 42-74 (74)
120 PF15023 DUF4523: Protein of u 87.8 1.9 4.1E-05 30.9 5.4 35 54-89 125-159 (166)
121 KOG0128 RNA-binding protein SA 87.3 0.096 2.1E-06 46.0 -1.6 47 42-88 697-743 (881)
122 PF11767 SET_assoc: Histone ly 85.3 1.7 3.7E-05 26.7 3.7 39 42-86 27-65 (66)
123 KOG1457 RNA binding protein (c 84.9 1.5 3.3E-05 33.6 3.9 26 55-80 249-274 (284)
124 KOG0105 Alternative splicing f 84.9 5.7 0.00012 29.8 6.8 45 2-80 132-176 (241)
125 KOG3152 TBP-binding protein, a 82.1 0.48 1E-05 36.7 0.3 28 56-83 130-157 (278)
126 KOG2416 Acinus (induces apopto 80.4 0.92 2E-05 38.9 1.4 38 53-90 480-520 (718)
127 PF10309 DUF2414: Protein of u 79.3 6.7 0.00015 23.8 4.6 28 40-74 35-62 (62)
128 KOG1365 RNA-binding protein Fu 75.5 2.5 5.5E-05 34.7 2.5 48 41-89 312-359 (508)
129 KOG4849 mRNA cleavage factor I 75.2 2.6 5.6E-05 34.3 2.5 45 42-86 112-156 (498)
130 KOG4660 Protein Mei2, essentia 74.8 6 0.00013 33.6 4.6 49 42-90 419-471 (549)
131 KOG0115 RNA-binding protein p5 69.8 7.3 0.00016 30.3 3.7 60 2-89 48-111 (275)
132 KOG4676 Splicing factor, argin 68.3 6 0.00013 32.6 3.1 62 1-87 23-84 (479)
133 PF02714 DUF221: Domain of unk 66.9 7.7 0.00017 29.8 3.5 33 57-91 1-33 (325)
134 KOG2193 IGF-II mRNA-binding pr 65.5 2.1 4.6E-05 35.6 0.1 46 53-98 36-82 (584)
135 PF07576 BRAP2: BRCA1-associat 64.6 27 0.00058 23.4 5.3 37 42-80 44-80 (110)
136 KOG4210 Nuclear localization s 64.5 7.6 0.00016 30.2 3.0 50 42-91 118-167 (285)
137 KOG4019 Calcineurin-mediated s 62.5 21 0.00045 26.5 4.7 43 54-96 51-94 (193)
138 KOG1365 RNA-binding protein Fu 58.5 19 0.00041 29.8 4.3 32 50-82 202-233 (508)
139 KOG4307 RNA binding protein RB 54.0 20 0.00043 31.8 4.0 35 54-89 40-74 (944)
140 KOG0129 Predicted RNA-binding 51.6 27 0.00059 29.6 4.3 32 42-73 401-432 (520)
141 PF11823 DUF3343: Protein of u 37.6 49 0.0011 20.0 3.0 26 56-81 3-28 (73)
142 PF03439 Spt5-NGN: Early trans 31.2 81 0.0018 19.7 3.3 25 52-76 42-66 (84)
143 KOG2591 c-Mpl binding protein, 29.0 20 0.00044 30.9 0.2 30 58-87 216-247 (684)
144 KOG2318 Uncharacterized conser 27.5 91 0.002 27.1 3.8 34 56-89 270-305 (650)
145 PF07292 NID: Nmi/IFP 35 domai 26.3 1.6E+02 0.0034 19.0 4.0 32 57-89 1-34 (88)
146 smart00596 PRE_C2HC PRE_C2HC d 24.5 96 0.0021 19.2 2.6 46 42-90 18-63 (69)
147 PF15513 DUF4651: Domain of un 23.5 1.5E+02 0.0033 18.0 3.3 13 2-14 11-23 (62)
148 KOG0804 Cytoplasmic Zn-finger 22.1 1.6E+02 0.0035 24.9 4.2 38 42-81 105-142 (493)
149 KOG2187 tRNA uracil-5-methyltr 21.2 83 0.0018 26.9 2.4 38 53-90 62-99 (534)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.61 E-value=1e-14 Score=102.51 Aligned_cols=67 Identities=40% Similarity=0.740 Sum_probs=62.8
Q ss_pred CHHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 1 MLADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
.|+++|++||.|.+ +.|+.|+.+++++|||||+|.+.++|++|+..||+..++
T Consensus 50 ~L~~~F~~~G~I~~---------------------------v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~ 102 (144)
T PLN03134 50 SLRDAFAHFGDVVD---------------------------AKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELN 102 (144)
T ss_pred HHHHHHhcCCCeEE---------------------------EEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 37899999999999 999999999999999999999999999999999999999
Q ss_pred CeeEEEEeccCCCC
Q 033751 81 GRVIFVDNVRPSRR 94 (112)
Q Consensus 81 g~~i~V~~a~~~~~ 94 (112)
|+.|+|+++++++.
T Consensus 103 Gr~l~V~~a~~~~~ 116 (144)
T PLN03134 103 GRHIRVNPANDRPS 116 (144)
T ss_pred CEEEEEEeCCcCCC
Confidence 99999999976543
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.54 E-value=3.6e-14 Score=109.82 Aligned_cols=66 Identities=35% Similarity=0.524 Sum_probs=62.7
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.+ ++|++|+.++.++|||||+|.+.++|.+|+..|||..++|
T Consensus 286 L~~~F~~fG~v~~---------------------------v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~g 338 (352)
T TIGR01661 286 LWQLFGPFGAVQN---------------------------VKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGN 338 (352)
T ss_pred HHHHHHhCCCeEE---------------------------EEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECC
Confidence 7899999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEeccCCCC
Q 033751 82 RVIFVDNVRPSRR 94 (112)
Q Consensus 82 ~~i~V~~a~~~~~ 94 (112)
+.|+|++...+..
T Consensus 339 r~i~V~~~~~~~~ 351 (352)
T TIGR01661 339 RVLQVSFKTNKAY 351 (352)
T ss_pred eEEEEEEccCCCC
Confidence 9999999876543
No 3
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=3.4e-13 Score=104.15 Aligned_cols=66 Identities=30% Similarity=0.589 Sum_probs=62.6
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|+.||+|.. ++||+|+.||+++|||||+|.++.++..|.++.+|.+|+|
T Consensus 118 LrreF~~YG~Ikr---------------------------irlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idg 170 (335)
T KOG0113|consen 118 LRREFEKYGPIKR---------------------------IRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDG 170 (335)
T ss_pred HHHHHHhcCccee---------------------------EEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecC
Confidence 7899999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEeccCCCC
Q 033751 82 RVIFVDNVRPSRR 94 (112)
Q Consensus 82 ~~i~V~~a~~~~~ 94 (112)
+.|.|++.+..+-
T Consensus 171 rri~VDvERgRTv 183 (335)
T KOG0113|consen 171 RRILVDVERGRTV 183 (335)
T ss_pred cEEEEEecccccc
Confidence 9999999875543
No 4
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.43 E-value=1.3e-12 Score=77.26 Aligned_cols=56 Identities=38% Similarity=0.716 Sum_probs=49.6
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|.++|++||+|.+ +.+..+. +++|||+|.+.++|+.|+..|||..++|
T Consensus 1 L~~~f~~fG~V~~---------------------------i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g 48 (56)
T PF13893_consen 1 LYKLFSKFGEVKK---------------------------IKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNG 48 (56)
T ss_dssp HHHHHTTTS-EEE---------------------------EEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETT
T ss_pred ChHHhCCcccEEE---------------------------EEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 6789999999988 7765443 6899999999999999999999999999
Q ss_pred eeEEEEec
Q 033751 82 RVIFVDNV 89 (112)
Q Consensus 82 ~~i~V~~a 89 (112)
++|+|++|
T Consensus 49 ~~l~V~~a 56 (56)
T PF13893_consen 49 RPLKVSYA 56 (56)
T ss_dssp EEEEEEEE
T ss_pred cEEEEEEC
Confidence 99999886
No 5
>smart00361 RRM_1 RNA recognition motif.
Probab=99.42 E-value=1.1e-12 Score=81.26 Aligned_cols=59 Identities=36% Similarity=0.689 Sum_probs=53.1
Q ss_pred HHHHhh----ccCcceecceeeeccCCCCCcccccccccccceEEE-EEeeCCC--CCcccEEEEEeCCHHHHHHHHHhh
Q 033751 2 LADAFS----QFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAAT-IIMDKGK--NRSKGYGYVTFSTEEEAQKALADM 74 (112)
Q Consensus 2 l~~~f~----~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~d~~t--~~~rG~afV~f~~~~~a~~Ai~~l 74 (112)
|+++|+ +||+|.+ +. ++.++.+ ++++|++||+|.++++|++|+..|
T Consensus 5 l~~~~~~~~~~fG~v~~---------------------------v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l 57 (70)
T smart00361 5 FEREFSEEEEYFGEVGK---------------------------INKIYIDNVGYENHKRGNVYITFERSEDAARAIVDL 57 (70)
T ss_pred HHHHHHHHHHhcCCeeE---------------------------EEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHh
Confidence 677888 9999999 75 7777767 899999999999999999999999
Q ss_pred CCceeCCeeEEEE
Q 033751 75 NGKLLDGRVIFVD 87 (112)
Q Consensus 75 ~g~~l~g~~i~V~ 87 (112)
||..++|+.|.++
T Consensus 58 ~g~~~~gr~l~~~ 70 (70)
T smart00361 58 NGRYFDGRTVKAE 70 (70)
T ss_pred CCCEECCEEEEeC
Confidence 9999999998763
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.42 E-value=7.6e-13 Score=102.42 Aligned_cols=67 Identities=31% Similarity=0.587 Sum_probs=62.9
Q ss_pred CHHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 1 MLADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
.|+++|+.||+|.+ |+|++|+.+|+++|||||+|.++++|++||..|||..+.
T Consensus 19 ~l~~~F~~~G~i~~---------------------------v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~ 71 (352)
T TIGR01661 19 EIRSLFTSIGEIES---------------------------CKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQ 71 (352)
T ss_pred HHHHHHHccCCEEE---------------------------EEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEEC
Confidence 37899999999999 999999999999999999999999999999999999999
Q ss_pred CeeEEEEeccCCCC
Q 033751 81 GRVIFVDNVRPSRR 94 (112)
Q Consensus 81 g~~i~V~~a~~~~~ 94 (112)
|+.|.|+++++...
T Consensus 72 g~~i~v~~a~~~~~ 85 (352)
T TIGR01661 72 NKTIKVSYARPSSD 85 (352)
T ss_pred CeeEEEEeeccccc
Confidence 99999999876543
No 7
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=6.4e-13 Score=100.31 Aligned_cols=64 Identities=36% Similarity=0.636 Sum_probs=62.1
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|.++|.+||.|.+ +.|.+|++||.++|||||+|.+.++|++||..|||+-.++
T Consensus 206 L~eLf~~fg~i~r---------------------------vylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~ 258 (270)
T KOG0122|consen 206 LEELFRPFGPITR---------------------------VYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDN 258 (270)
T ss_pred HHHHhhccCccce---------------------------eEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccce
Confidence 7899999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEeccCC
Q 033751 82 RVIFVDNVRPS 92 (112)
Q Consensus 82 ~~i~V~~a~~~ 92 (112)
--|+|+|++|+
T Consensus 259 LILrvEwskP~ 269 (270)
T KOG0122|consen 259 LILRVEWSKPS 269 (270)
T ss_pred EEEEEEecCCC
Confidence 99999999986
No 8
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.41 E-value=2e-13 Score=101.38 Aligned_cols=62 Identities=34% Similarity=0.642 Sum_probs=60.3
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|..+|++||.|-+ |.|++|+.|..++|||||-|....+|++|+++|||..|+|
T Consensus 30 LrrvFekYG~vgD---------------------------VyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldg 82 (256)
T KOG4207|consen 30 LRRVFEKYGRVGD---------------------------VYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDG 82 (256)
T ss_pred HHHHHHHhCcccc---------------------------eecccccccccccceeEEEeeecchHHHHHHhhcceeecc
Confidence 7899999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEecc
Q 033751 82 RVIFVDNVR 90 (112)
Q Consensus 82 ~~i~V~~a~ 90 (112)
++|+|.+|+
T Consensus 83 RelrVq~ar 91 (256)
T KOG4207|consen 83 RELRVQMAR 91 (256)
T ss_pred ceeeehhhh
Confidence 999999986
No 9
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=6.9e-13 Score=101.57 Aligned_cols=69 Identities=36% Similarity=0.643 Sum_probs=64.7
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|++.|.+||+|.+ ++|++|..|++++||+||.|.+.++|++||.+|+|.=|++
T Consensus 79 lr~aF~pFGevS~---------------------------akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~ 131 (321)
T KOG0148|consen 79 LREAFAPFGEVSD---------------------------AKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGR 131 (321)
T ss_pred HHHHhcccccccc---------------------------ceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeecc
Confidence 7899999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEeccCCCCCCC
Q 033751 82 RVIFVDNVRPSRRYNT 97 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~~ 97 (112)
|.|+-.||+.++....
T Consensus 132 R~IRTNWATRKp~e~n 147 (321)
T KOG0148|consen 132 RTIRTNWATRKPSEMN 147 (321)
T ss_pred ceeeccccccCccccC
Confidence 9999999987664433
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.35 E-value=2.1e-12 Score=102.02 Aligned_cols=65 Identities=28% Similarity=0.511 Sum_probs=61.6
Q ss_pred CHHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 1 MLADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
.|+++|+.||+|++ |+|++|+.+++++|||||+|.++++|++|+..|||..+.
T Consensus 123 ~L~~lF~~~G~V~~---------------------------v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~ 175 (346)
T TIGR01659 123 ELYALFRTIGPINT---------------------------CRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVR 175 (346)
T ss_pred HHHHHHHhcCCEEE---------------------------EEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccC
Confidence 37899999999999 999999999999999999999999999999999999999
Q ss_pred CeeEEEEeccCC
Q 033751 81 GRVIFVDNVRPS 92 (112)
Q Consensus 81 g~~i~V~~a~~~ 92 (112)
+++|+|.++++.
T Consensus 176 gr~i~V~~a~p~ 187 (346)
T TIGR01659 176 NKRLKVSYARPG 187 (346)
T ss_pred Cceeeeeccccc
Confidence 999999998764
No 11
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.33 E-value=1.1e-11 Score=74.59 Aligned_cols=56 Identities=45% Similarity=0.824 Sum_probs=52.8
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +.+..+ .++..+|+|||+|.+.++|+.|+..|||..++|
T Consensus 15 l~~~f~~~g~i~~---------------------------~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~ 66 (70)
T PF00076_consen 15 LRDFFSQFGKIES---------------------------IKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKING 66 (70)
T ss_dssp HHHHHHTTSTEEE---------------------------EEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred HHHHHHHhhhccc---------------------------cccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECc
Confidence 7899999999999 999998 589999999999999999999999999999999
Q ss_pred eeEE
Q 033751 82 RVIF 85 (112)
Q Consensus 82 ~~i~ 85 (112)
+.|+
T Consensus 67 ~~ir 70 (70)
T PF00076_consen 67 RKIR 70 (70)
T ss_dssp EEEE
T ss_pred cCcC
Confidence 9885
No 12
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.32 E-value=9.9e-12 Score=104.26 Aligned_cols=67 Identities=21% Similarity=0.396 Sum_probs=62.7
Q ss_pred CHHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 1 MLADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
.|+++|+.||.|.. ++|++|+.+++++|||||+|.+.++|.+||..|||..++
T Consensus 220 dLk~lFs~FG~I~s---------------------------vrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elg 272 (612)
T TIGR01645 220 DIKSVFEAFGEIVK---------------------------CQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG 272 (612)
T ss_pred HHHHHHhhcCCeeE---------------------------EEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeC
Confidence 37899999999999 999999999999999999999999999999999999999
Q ss_pred CeeEEEEeccCCCC
Q 033751 81 GRVIFVDNVRPSRR 94 (112)
Q Consensus 81 g~~i~V~~a~~~~~ 94 (112)
|+.|+|.++.+.+.
T Consensus 273 Gr~LrV~kAi~pP~ 286 (612)
T TIGR01645 273 GQYLRVGKCVTPPD 286 (612)
T ss_pred CeEEEEEecCCCcc
Confidence 99999999986543
No 13
>smart00360 RRM RNA recognition motif.
Probab=99.25 E-value=4.3e-11 Score=70.44 Aligned_cols=59 Identities=44% Similarity=0.804 Sum_probs=54.7
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +.+..++.++.++|+|||+|.+.++|..|+..+++..++|
T Consensus 13 l~~~f~~~g~v~~---------------------------~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~ 65 (71)
T smart00360 13 LRELFSKFGKIES---------------------------VRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDG 65 (71)
T ss_pred HHHHHHhhCCEeE---------------------------EEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCC
Confidence 6889999999999 9998888788999999999999999999999999999999
Q ss_pred eeEEEE
Q 033751 82 RVIFVD 87 (112)
Q Consensus 82 ~~i~V~ 87 (112)
+.+.|+
T Consensus 66 ~~~~v~ 71 (71)
T smart00360 66 RPLKVK 71 (71)
T ss_pred cEEEeC
Confidence 988773
No 14
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=1.3e-11 Score=99.48 Aligned_cols=66 Identities=32% Similarity=0.533 Sum_probs=60.6
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC-
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD- 80 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~- 80 (112)
|..+|++.|+|.+ ++|++|+.+|.+||||||+|.+.++|+.||+.||+++|.
T Consensus 100 LvplfEkiG~I~e---------------------------lRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~ 152 (506)
T KOG0117|consen 100 LVPLFEKIGKIYE---------------------------LRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRP 152 (506)
T ss_pred hHHHHHhccceee---------------------------EEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccC
Confidence 6789999999999 999999999999999999999999999999999999985
Q ss_pred CeeEEEEeccCCCC
Q 033751 81 GRVIFVDNVRPSRR 94 (112)
Q Consensus 81 g~~i~V~~a~~~~~ 94 (112)
|+.|.|+.+....+
T Consensus 153 GK~igvc~Svan~R 166 (506)
T KOG0117|consen 153 GKLLGVCVSVANCR 166 (506)
T ss_pred CCEeEEEEeeecce
Confidence 99999988865443
No 15
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=9.4e-12 Score=93.45 Aligned_cols=61 Identities=43% Similarity=0.688 Sum_probs=56.5
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||+|++ +.|+.|+.+|+++||+||+|.+.++|.+|++.- .-.|+|
T Consensus 29 l~~yFeqfGeI~e---------------------------avvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdG 80 (247)
T KOG0149|consen 29 LRRYFEQFGEIVE---------------------------AVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDG 80 (247)
T ss_pred HHHHHHHhCceEE---------------------------EEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccc
Confidence 7899999999999 999999999999999999999999999999855 367999
Q ss_pred eeEEEEecc
Q 033751 82 RVIFVDNVR 90 (112)
Q Consensus 82 ~~i~V~~a~ 90 (112)
|+..|.+|-
T Consensus 81 R~aNcnlA~ 89 (247)
T KOG0149|consen 81 RKANCNLAS 89 (247)
T ss_pred cccccchhh
Confidence 999999874
No 16
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.23 E-value=4.9e-11 Score=94.30 Aligned_cols=64 Identities=28% Similarity=0.525 Sum_probs=59.3
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.+ ++|++|+.+++++|||||+|.+.++|++||..||+..+.+
T Consensus 210 L~~~F~~fG~V~~---------------------------v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g 262 (346)
T TIGR01659 210 LDTIFGKYGQIVQ---------------------------KNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEG 262 (346)
T ss_pred HHHHHHhcCCEEE---------------------------EEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 7899999999999 9999999999999999999999999999999999999876
Q ss_pred --eeEEEEeccCC
Q 033751 82 --RVIFVDNVRPS 92 (112)
Q Consensus 82 --~~i~V~~a~~~ 92 (112)
++|.|+++...
T Consensus 263 ~~~~l~V~~a~~~ 275 (346)
T TIGR01659 263 GSQPLTVRLAEEH 275 (346)
T ss_pred CceeEEEEECCcc
Confidence 68999988643
No 17
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.21 E-value=4.1e-11 Score=100.61 Aligned_cols=62 Identities=34% Similarity=0.606 Sum_probs=59.0
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||+|.+ ++|++|+.+++++|||||+|.++++|+.|+..|||..++|
T Consensus 124 Lr~lF~~fG~I~s---------------------------V~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~G 176 (612)
T TIGR01645 124 IRRAFDPFGPIKS---------------------------INMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGG 176 (612)
T ss_pred HHHHHHccCCEEE---------------------------EEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEec
Confidence 7899999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEecc
Q 033751 82 RVIFVDNVR 90 (112)
Q Consensus 82 ~~i~V~~a~ 90 (112)
+.|+|....
T Consensus 177 R~IkV~rp~ 185 (612)
T TIGR01645 177 RNIKVGRPS 185 (612)
T ss_pred ceeeecccc
Confidence 999998653
No 18
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=3.2e-11 Score=94.35 Aligned_cols=62 Identities=35% Similarity=0.699 Sum_probs=57.4
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+.+|++||.|.+ +.|+.+. .-+||||||+|.+++||++|-.+|||+.+.|
T Consensus 113 L~aMF~kfG~Vld---------------------------VEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEG 163 (376)
T KOG0125|consen 113 LRAMFEKFGKVLD---------------------------VEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEG 163 (376)
T ss_pred HHHHHHhhCceee---------------------------EEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeec
Confidence 7899999999999 9988884 5589999999999999999999999999999
Q ss_pred eeEEEEeccCC
Q 033751 82 RVIFVDNVRPS 92 (112)
Q Consensus 82 ~~i~V~~a~~~ 92 (112)
|.|.|..++.+
T Consensus 164 RkIEVn~ATar 174 (376)
T KOG0125|consen 164 RKIEVNNATAR 174 (376)
T ss_pred eEEEEeccchh
Confidence 99999998754
No 19
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.17 E-value=1.4e-10 Score=95.54 Aligned_cols=63 Identities=38% Similarity=0.546 Sum_probs=60.1
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|.++|++||+|.. |+|++|..|++++|||||+|.++++|++|+..+++..+.|
T Consensus 17 L~~~F~~~G~v~~---------------------------v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~g 69 (562)
T TIGR01628 17 LYDLFKPFGPVLS---------------------------VRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGG 69 (562)
T ss_pred HHHHHHhcCCEEE---------------------------EEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 7899999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEeccC
Q 033751 82 RVIFVDNVRP 91 (112)
Q Consensus 82 ~~i~V~~a~~ 91 (112)
+.|+|.++..
T Consensus 70 k~i~i~~s~~ 79 (562)
T TIGR01628 70 KPIRIMWSQR 79 (562)
T ss_pred eeEEeecccc
Confidence 9999999853
No 20
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.17 E-value=1.1e-10 Score=96.15 Aligned_cols=63 Identities=37% Similarity=0.764 Sum_probs=59.6
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.+ ++++.| .++.++|||||+|.+.++|.+|+..|||..++|
T Consensus 302 L~~~F~~~G~i~~---------------------------~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~g 353 (562)
T TIGR01628 302 LRELFSECGEITS---------------------------AKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGG 353 (562)
T ss_pred HHHHHHhcCCeEE---------------------------EEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCC
Confidence 7899999999999 999999 589999999999999999999999999999999
Q ss_pred eeEEEEeccCC
Q 033751 82 RVIFVDNVRPS 92 (112)
Q Consensus 82 ~~i~V~~a~~~ 92 (112)
++|.|.++..+
T Consensus 354 k~l~V~~a~~k 364 (562)
T TIGR01628 354 KPLYVALAQRK 364 (562)
T ss_pred ceeEEEeccCc
Confidence 99999998753
No 21
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.15 E-value=2e-10 Score=92.06 Aligned_cols=62 Identities=39% Similarity=0.640 Sum_probs=59.7
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +.++.++.+|+++|||||+|.+.++|..|+..|||..+.|
T Consensus 203 l~~~f~~~G~i~~---------------------------v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g 255 (457)
T TIGR01622 203 LRQIFEPFGDIED---------------------------VQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAG 255 (457)
T ss_pred HHHHHHhcCCeEE---------------------------EEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECC
Confidence 7899999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEecc
Q 033751 82 RVIFVDNVR 90 (112)
Q Consensus 82 ~~i~V~~a~ 90 (112)
+.|.|.++.
T Consensus 256 ~~i~v~~a~ 264 (457)
T TIGR01622 256 RPIKVGYAQ 264 (457)
T ss_pred EEEEEEEcc
Confidence 999999975
No 22
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=3.3e-11 Score=90.53 Aligned_cols=68 Identities=32% Similarity=0.586 Sum_probs=63.1
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|...|-+||.|.+ +.++.|.++++.||||||+|...++|.+||..||+.+|.|
T Consensus 27 LhaAFIPFGDI~d---------------------------IqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~G 79 (298)
T KOG0111|consen 27 LHAAFIPFGDIKD---------------------------IQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFG 79 (298)
T ss_pred HHhccccccchhh---------------------------cccccchhcccccceeEEEeeccchhHHHhhcCchhhhcc
Confidence 5677889999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEeccCCCCCC
Q 033751 82 RVIFVDNVRPSRRYN 96 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~ 96 (112)
|.|+|.+|+|.+-+.
T Consensus 80 rtirVN~AkP~kike 94 (298)
T KOG0111|consen 80 RTIRVNLAKPEKIKE 94 (298)
T ss_pred eeEEEeecCCccccC
Confidence 999999998866543
No 23
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.15 E-value=2.1e-10 Score=92.96 Aligned_cols=65 Identities=22% Similarity=0.390 Sum_probs=60.9
Q ss_pred CHHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 1 MLADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
+|+++|+.||.|.. +.++.++.+|.++|||||+|.+.++|..|+..|||..++
T Consensus 311 ~l~~~f~~~G~i~~---------------------------~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~ 363 (509)
T TIGR01642 311 QIKELLESFGDLKA---------------------------FNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTG 363 (509)
T ss_pred HHHHHHHhcCCeeE---------------------------EEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 37899999999999 999999999999999999999999999999999999999
Q ss_pred CeeEEEEeccCC
Q 033751 81 GRVIFVDNVRPS 92 (112)
Q Consensus 81 g~~i~V~~a~~~ 92 (112)
|+.|.|.++...
T Consensus 364 ~~~l~v~~a~~~ 375 (509)
T TIGR01642 364 DNKLHVQRACVG 375 (509)
T ss_pred CeEEEEEECccC
Confidence 999999998643
No 24
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=1e-10 Score=89.68 Aligned_cols=67 Identities=31% Similarity=0.572 Sum_probs=64.0
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
++.+|+..|+|.. |++++|+.+|++-||+||.|-++.+|++||.-|||..+..
T Consensus 58 ~rSLF~SiGeiES---------------------------cKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~ 110 (360)
T KOG0145|consen 58 LRSLFGSIGEIES---------------------------CKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQN 110 (360)
T ss_pred HHHHhhcccceee---------------------------eeeeeccccccccccceeeecChHHHHHHHhhhcceeecc
Confidence 6789999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEeccCCCCC
Q 033751 82 RVIFVDNVRPSRRY 95 (112)
Q Consensus 82 ~~i~V~~a~~~~~~ 95 (112)
+.|+|++++|+...
T Consensus 111 KTIKVSyARPSs~~ 124 (360)
T KOG0145|consen 111 KTIKVSYARPSSDS 124 (360)
T ss_pred ceEEEEeccCChhh
Confidence 99999999987664
No 25
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.11 E-value=5.1e-10 Score=68.16 Aligned_cols=56 Identities=43% Similarity=0.774 Sum_probs=52.0
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|.++|+.||.|.. +.+..++. +..+|+|||+|.++++|+.|+..+++..++|
T Consensus 15 l~~~f~~~g~v~~---------------------------v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g 66 (70)
T PF14259_consen 15 LRNFFSRFGPVEK---------------------------VRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDG 66 (70)
T ss_dssp HHHHCTTSSBEEE---------------------------EEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred HHHHHHhcCCcce---------------------------EEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECC
Confidence 6789999999988 99999986 8999999999999999999999999999999
Q ss_pred eeEE
Q 033751 82 RVIF 85 (112)
Q Consensus 82 ~~i~ 85 (112)
+.|+
T Consensus 67 ~~l~ 70 (70)
T PF14259_consen 67 RKLR 70 (70)
T ss_dssp EEEE
T ss_pred EEcC
Confidence 9874
No 26
>smart00362 RRM_2 RNA recognition motif.
Probab=99.11 E-value=5.7e-10 Score=65.88 Aligned_cols=57 Identities=40% Similarity=0.747 Sum_probs=51.9
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|.+||++.. +.+..++ +.++|+|||+|.+.++|+.|+..++|..+.|
T Consensus 16 l~~~~~~~g~v~~---------------------------~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~ 66 (72)
T smart00362 16 LKELFSKFGPIES---------------------------VKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGG 66 (72)
T ss_pred HHHHHHhcCCEEE---------------------------EEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECC
Confidence 6789999999999 8888776 7889999999999999999999999999999
Q ss_pred eeEEEE
Q 033751 82 RVIFVD 87 (112)
Q Consensus 82 ~~i~V~ 87 (112)
+.+.|+
T Consensus 67 ~~i~v~ 72 (72)
T smart00362 67 RPLRVE 72 (72)
T ss_pred EEEeeC
Confidence 998773
No 27
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=1.8e-10 Score=80.96 Aligned_cols=65 Identities=29% Similarity=0.482 Sum_probs=60.6
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
+.+.|.-||+|+- +.+-.|+.||-.+|||+|+|.+..+|++|+.++||..|.|
T Consensus 89 i~d~F~dyGeiKN---------------------------ihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~ 141 (170)
T KOG0130|consen 89 IHDKFADYGEIKN---------------------------IHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLG 141 (170)
T ss_pred HHHHHhhcccccc---------------------------eeeccccccccccceeeeehHhHHHHHHHHHhccchhhhC
Confidence 6789999999999 8899999999999999999999999999999999999999
Q ss_pred eeEEEEeccCCC
Q 033751 82 RVIFVDNVRPSR 93 (112)
Q Consensus 82 ~~i~V~~a~~~~ 93 (112)
..|.|+||-.+.
T Consensus 142 q~v~VDw~Fv~g 153 (170)
T KOG0130|consen 142 QNVSVDWCFVKG 153 (170)
T ss_pred CceeEEEEEecC
Confidence 999999985433
No 28
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=1.8e-10 Score=92.88 Aligned_cols=82 Identities=26% Similarity=0.366 Sum_probs=68.4
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCcee--
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL-- 79 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l-- 79 (112)
|+.+|++||.|.+ |.|++|+.|+.++|||||+|.+.++|.+|+.+||..+.
T Consensus 51 lr~lFe~yg~V~e---------------------------inl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlp 103 (510)
T KOG0144|consen 51 LRELFEKYGNVYE---------------------------INLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLP 103 (510)
T ss_pred HHHHHHHhCceeE---------------------------EEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccC
Confidence 7899999999999 99999999999999999999999999999999998774
Q ss_pred -CCeeEEEEeccCCCCC---CCCCCCcCCCCCCCC
Q 033751 80 -DGRVIFVDNVRPSRRY---NTDAPLARQSAQSPE 110 (112)
Q Consensus 80 -~g~~i~V~~a~~~~~~---~~~~~~~~~~~~~~~ 110 (112)
+.++|.|++|...+.+ .+....+..+...+|
T Consensus 104 G~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te 138 (510)
T KOG0144|consen 104 GMHHPVQVKYADGERERIVEERKLFVGMLSKQCTE 138 (510)
T ss_pred CCCcceeecccchhhhccccchhhhhhhccccccH
Confidence 4689999999776655 444455555554444
No 29
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.06 E-value=5.2e-10 Score=81.17 Aligned_cols=61 Identities=26% Similarity=0.463 Sum_probs=54.2
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+.+|..||+|.. +.|... +.|||||+|.++.+|..|+..|||+.|.|
T Consensus 27 LE~~F~~yG~lrs---------------------------vWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG 74 (195)
T KOG0107|consen 27 LERAFSKYGPLRS---------------------------VWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICG 74 (195)
T ss_pred HHHHHHhcCccee---------------------------EEEeec-----CCCceEEeccCcccHHHHHhhcCCccccC
Confidence 7889999999988 766443 57999999999999999999999999999
Q ss_pred eeEEEEeccCCCC
Q 033751 82 RVIFVDNVRPSRR 94 (112)
Q Consensus 82 ~~i~V~~a~~~~~ 94 (112)
.+|+|++++....
T Consensus 75 ~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 75 SRIRVELSTGRPR 87 (195)
T ss_pred ceEEEEeecCCcc
Confidence 9999999976554
No 30
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.05 E-value=8.3e-10 Score=79.14 Aligned_cols=63 Identities=37% Similarity=0.768 Sum_probs=59.8
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|.++|..||.|.. +.+..|+.+++++|+|||+|.++++|..|+..++|..+.|
T Consensus 132 l~~~F~~~g~~~~---------------------------~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~ 184 (306)
T COG0724 132 LRELFKKFGPVKR---------------------------VRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEG 184 (306)
T ss_pred HHHHHHhcCceeE---------------------------EEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECC
Confidence 7899999999999 9999998899999999999999999999999999999999
Q ss_pred eeEEEEeccC
Q 033751 82 RVIFVDNVRP 91 (112)
Q Consensus 82 ~~i~V~~a~~ 91 (112)
+.|.|..+..
T Consensus 185 ~~~~v~~~~~ 194 (306)
T COG0724 185 RPLRVQKAQP 194 (306)
T ss_pred ceeEeecccc
Confidence 9999999653
No 31
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.05 E-value=7.5e-10 Score=88.74 Aligned_cols=62 Identities=40% Similarity=0.624 Sum_probs=58.5
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. ++|+.|+.+++++|||||+|.+.++|++||. |+|..+.|
T Consensus 106 l~~~F~~~G~v~~---------------------------v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g 157 (457)
T TIGR01622 106 LYEFFSKVGKVRD---------------------------VQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLG 157 (457)
T ss_pred HHHHHHhcCCeeE---------------------------EEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECC
Confidence 7899999999999 9999999999999999999999999999997 99999999
Q ss_pred eeEEEEeccC
Q 033751 82 RVIFVDNVRP 91 (112)
Q Consensus 82 ~~i~V~~a~~ 91 (112)
+.|.|..+..
T Consensus 158 ~~i~v~~~~~ 167 (457)
T TIGR01622 158 RPIIVQSSQA 167 (457)
T ss_pred eeeEEeecch
Confidence 9999988653
No 32
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.03 E-value=5.3e-10 Score=77.84 Aligned_cols=63 Identities=25% Similarity=0.435 Sum_probs=59.4
Q ss_pred CHHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 1 MLADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
+|.++|+..|+|.+ +.|-.|+.+-.+.|||||+|.+.++|..|+..++|..++
T Consensus 52 qiyELFs~cG~irr---------------------------iiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLd 104 (153)
T KOG0121|consen 52 QIYELFSKCGDIRR---------------------------IIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLD 104 (153)
T ss_pred HHHHHHHhccchhe---------------------------eEeccccCCcCccceEEEEEecchhHHHHHHHhccCccc
Confidence 47899999999999 888899988999999999999999999999999999999
Q ss_pred CeeEEEEecc
Q 033751 81 GRVIFVDNVR 90 (112)
Q Consensus 81 g~~i~V~~a~ 90 (112)
.+.|++++.-
T Consensus 105 dr~ir~D~D~ 114 (153)
T KOG0121|consen 105 DRPIRIDWDA 114 (153)
T ss_pred ccceeeeccc
Confidence 9999999874
No 33
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.03 E-value=2.3e-09 Score=81.91 Aligned_cols=60 Identities=18% Similarity=0.311 Sum_probs=54.8
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|+.||.|.+ +.|++|+. .+|||||+|.++++|+.|+. |+|..+.|
T Consensus 21 LrefFS~~G~I~~---------------------------V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~g 69 (260)
T PLN03120 21 IKEFFSFSGDIEY---------------------------VEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVD 69 (260)
T ss_pred HHHHHHhcCCeEE---------------------------EEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCC
Confidence 7899999999999 99998864 57999999999999999996 99999999
Q ss_pred eeEEEEeccCC
Q 033751 82 RVIFVDNVRPS 92 (112)
Q Consensus 82 ~~i~V~~a~~~ 92 (112)
+.|.|..+..-
T Consensus 70 r~V~Vt~a~~~ 80 (260)
T PLN03120 70 QSVTITPAEDY 80 (260)
T ss_pred ceEEEEeccCC
Confidence 99999998643
No 34
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=1.4e-09 Score=83.48 Aligned_cols=63 Identities=38% Similarity=0.573 Sum_probs=60.0
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|..+|.+||.|.. +++++|..|++.+||+||++.+-++|.-||..|||+.+++
T Consensus 295 LWQlFgpFGAv~n---------------------------VKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~ 347 (360)
T KOG0145|consen 295 LWQLFGPFGAVTN---------------------------VKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD 347 (360)
T ss_pred HHHHhCcccceee---------------------------EEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccc
Confidence 7899999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEeccC
Q 033751 82 RVIFVDNVRP 91 (112)
Q Consensus 82 ~~i~V~~a~~ 91 (112)
+.+.|.+-..
T Consensus 348 rvLQVsFKtn 357 (360)
T KOG0145|consen 348 RVLQVSFKTN 357 (360)
T ss_pred eEEEEEEecC
Confidence 9999988654
No 35
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=1.9e-09 Score=82.78 Aligned_cols=59 Identities=29% Similarity=0.581 Sum_probs=54.7
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|++.|++||+|.+ +|+.+|+ ||+||.|.+.|.|.+||.+||+.++.|
T Consensus 181 mr~~Fs~fG~I~E---------------------------VRvFk~q------GYaFVrF~tkEaAahAIv~mNntei~G 227 (321)
T KOG0148|consen 181 MRQTFSPFGPIQE---------------------------VRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTEIGG 227 (321)
T ss_pred HHHhcccCCcceE---------------------------EEEeccc------ceEEEEecchhhHHHHHHHhcCceeCc
Confidence 6899999999999 9998886 899999999999999999999999999
Q ss_pred eeEEEEeccCCC
Q 033751 82 RVIFVDNVRPSR 93 (112)
Q Consensus 82 ~~i~V~~a~~~~ 93 (112)
+.++|.|-+...
T Consensus 228 ~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 228 QLVRCSWGKEGD 239 (321)
T ss_pred eEEEEeccccCC
Confidence 999999976543
No 36
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.98 E-value=4.2e-10 Score=86.64 Aligned_cols=67 Identities=31% Similarity=0.543 Sum_probs=62.2
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|..+|-+||-|+. .++..|+.|+.++.|+||.|+++.+++.||.+|||.+|+-
T Consensus 302 liQmF~PFGhivS---------------------------aKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGM 354 (371)
T KOG0146|consen 302 LIQMFLPFGHIVS---------------------------AKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGM 354 (371)
T ss_pred HHHHhccccceee---------------------------eeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhh
Confidence 5678999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEeccCCCCC
Q 033751 82 RVIFVDNVRPSRRY 95 (112)
Q Consensus 82 ~~i~V~~a~~~~~~ 95 (112)
++++|.+-+++...
T Consensus 355 KRLKVQLKRPkdan 368 (371)
T KOG0146|consen 355 KRLKVQLKRPKDAN 368 (371)
T ss_pred hhhhhhhcCccccC
Confidence 99999998876543
No 37
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.97 E-value=1.4e-09 Score=90.93 Aligned_cols=61 Identities=31% Similarity=0.482 Sum_probs=55.3
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC-
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD- 80 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~- 80 (112)
|+++|++||+|.+ ++|++| .+++++|||||+|.++++|++||+.||+..+.
T Consensus 75 L~~~F~~~G~I~~---------------------------vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~ 126 (578)
T TIGR01648 75 LVPLFEKAGPIYE---------------------------LRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRP 126 (578)
T ss_pred HHHHHHhhCCEEE---------------------------EEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecC
Confidence 7899999999999 999999 69999999999999999999999999999985
Q ss_pred CeeEEEEecc
Q 033751 81 GRVIFVDNVR 90 (112)
Q Consensus 81 g~~i~V~~a~ 90 (112)
++.|.|..+.
T Consensus 127 Gr~l~V~~S~ 136 (578)
T TIGR01648 127 GRLLGVCISV 136 (578)
T ss_pred Cccccccccc
Confidence 7777776553
No 38
>PLN03213 repressor of silencing 3; Provisional
Probab=98.96 E-value=1.6e-09 Score=89.06 Aligned_cols=59 Identities=22% Similarity=0.488 Sum_probs=54.2
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCH--HHHHHHHHhhCCcee
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTE--EEAQKALADMNGKLL 79 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~--~~a~~Ai~~l~g~~l 79 (112)
|+.+|+.||.|.+ +.|+ +++| ||||||+|.+. .++.+||..|||...
T Consensus 27 LravFSeFGsVkd---------------------------VEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEW 75 (759)
T PLN03213 27 LLKIFSPMGTVDA---------------------------VEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVW 75 (759)
T ss_pred HHHHHHhcCCeeE---------------------------EEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCee
Confidence 7889999999999 9998 4467 99999999987 789999999999999
Q ss_pred CCeeEEEEeccC
Q 033751 80 DGRVIFVDNVRP 91 (112)
Q Consensus 80 ~g~~i~V~~a~~ 91 (112)
+|+.|+|..|++
T Consensus 76 KGR~LKVNKAKP 87 (759)
T PLN03213 76 KGGRLRLEKAKE 87 (759)
T ss_pred cCceeEEeeccH
Confidence 999999999974
No 39
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.94 E-value=3.4e-09 Score=85.94 Aligned_cols=63 Identities=21% Similarity=0.393 Sum_probs=55.7
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeC---CCCCcccEEEEEeCCHHHHHHHHHhhCCce
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDK---GKNRSKGYGYVTFSTEEEAQKALADMNGKL 78 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~---~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~ 78 (112)
|+++|++||.|.. |.|+++. .++...|++||+|.++++|++|+..|||..
T Consensus 436 l~~~f~~~G~v~~---------------------------v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~ 488 (509)
T TIGR01642 436 VKTEFSKYGPLIN---------------------------IVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRK 488 (509)
T ss_pred HHHHHHhcCCeeE---------------------------EEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCE
Confidence 6788999999999 8888752 345678999999999999999999999999
Q ss_pred eCCeeEEEEeccC
Q 033751 79 LDGRVIFVDNVRP 91 (112)
Q Consensus 79 l~g~~i~V~~a~~ 91 (112)
++|+.|.|.+...
T Consensus 489 ~~gr~v~~~~~~~ 501 (509)
T TIGR01642 489 FNDRVVVAAFYGE 501 (509)
T ss_pred ECCeEEEEEEeCH
Confidence 9999999998753
No 40
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.94 E-value=1.4e-09 Score=87.82 Aligned_cols=66 Identities=27% Similarity=0.466 Sum_probs=59.6
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC-
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD- 80 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~- 80 (112)
++++|++||.|.+ |.|.+|. -+.+||||||.|.+.+-|..||+.|||...+
T Consensus 141 vr~iFs~fG~Ied---------------------------~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tme 192 (510)
T KOG0144|consen 141 VREIFSRFGHIED---------------------------CYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTME 192 (510)
T ss_pred HHHHHHhhCccch---------------------------hhheecc-cccccceeEEEEehHHHHHHHHHhhccceeec
Confidence 6789999999999 9999997 6899999999999999999999999998864
Q ss_pred --CeeEEEEeccCCCCC
Q 033751 81 --GRVIFVDNVRPSRRY 95 (112)
Q Consensus 81 --g~~i~V~~a~~~~~~ 95 (112)
..+|.|++|.+.+++
T Consensus 193 Gcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 193 GCSQPLVVKFADTQKDK 209 (510)
T ss_pred cCCCceEEEecccCCCc
Confidence 469999999876654
No 41
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.94 E-value=3e-09 Score=86.82 Aligned_cols=59 Identities=25% Similarity=0.356 Sum_probs=54.5
Q ss_pred CHHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 1 MLADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
+|+++|+.||.|.+ +++++++ +|+|||+|.++++|+.|+..|||..++
T Consensus 292 ~L~~lF~~yG~V~~---------------------------vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~ 339 (481)
T TIGR01649 292 RLFNLFCVYGNVER---------------------------VKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLF 339 (481)
T ss_pred HHHHHHHhcCCeEE---------------------------EEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 37899999999999 9998873 699999999999999999999999999
Q ss_pred CeeEEEEeccC
Q 033751 81 GRVIFVDNVRP 91 (112)
Q Consensus 81 g~~i~V~~a~~ 91 (112)
|+.|.|.+++.
T Consensus 340 g~~l~v~~s~~ 350 (481)
T TIGR01649 340 GKPLRVCPSKQ 350 (481)
T ss_pred CceEEEEEccc
Confidence 99999999854
No 42
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.94 E-value=1.5e-10 Score=84.57 Aligned_cols=60 Identities=32% Similarity=0.603 Sum_probs=56.9
Q ss_pred HHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCe
Q 033751 3 ADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGR 82 (112)
Q Consensus 3 ~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g~ 82 (112)
..+|++||.|+. +.+++|+.||+++||||..|.+-.+.--|+..|||-.|.||
T Consensus 53 l~VFSqyGe~vd---------------------------inLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gR 105 (219)
T KOG0126|consen 53 LCVFSQYGEIVD---------------------------INLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGR 105 (219)
T ss_pred EEEeeccCceEE---------------------------EEEEecCCCCcccceEEEEecCccceEEEEeccCCceecce
Confidence 467999999999 99999999999999999999999999999999999999999
Q ss_pred eEEEEec
Q 033751 83 VIFVDNV 89 (112)
Q Consensus 83 ~i~V~~a 89 (112)
.|+|+-.
T Consensus 106 tirVDHv 112 (219)
T KOG0126|consen 106 TIRVDHV 112 (219)
T ss_pred eEEeeec
Confidence 9999865
No 43
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.93 E-value=1e-08 Score=60.65 Aligned_cols=59 Identities=46% Similarity=0.772 Sum_probs=52.7
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|..+|.|.. +.+..++.+ ..+|+|||+|.+.++|+.|+..+++..+.|
T Consensus 16 i~~~~~~~g~i~~---------------------------~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~ 67 (74)
T cd00590 16 LRELFSKFGKVES---------------------------VRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGG 67 (74)
T ss_pred HHHHHHhcCCEEE---------------------------EEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 6788999999988 888888744 789999999999999999999999999999
Q ss_pred eeEEEEe
Q 033751 82 RVIFVDN 88 (112)
Q Consensus 82 ~~i~V~~ 88 (112)
+.+.|.+
T Consensus 68 ~~~~v~~ 74 (74)
T cd00590 68 RPLRVEF 74 (74)
T ss_pred eEEEEeC
Confidence 9998863
No 44
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.93 E-value=1.5e-09 Score=88.26 Aligned_cols=66 Identities=29% Similarity=0.596 Sum_probs=61.3
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|.++|+..|.|.. .+++.|++||+++||||++|.++++|..|++.|||.++.|
T Consensus 35 l~~~~~~~g~v~s---------------------------~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~g 87 (435)
T KOG0108|consen 35 LLSIFSGVGPVLS---------------------------FRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNG 87 (435)
T ss_pred HHHHHhccCccce---------------------------eeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCC
Confidence 6788999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEeccCCCC
Q 033751 82 RVIFVDNVRPSRR 94 (112)
Q Consensus 82 ~~i~V~~a~~~~~ 94 (112)
+.|+|.++.....
T Consensus 88 r~l~v~~~~~~~~ 100 (435)
T KOG0108|consen 88 RKLRVNYASNRKN 100 (435)
T ss_pred ceEEeecccccch
Confidence 9999999864433
No 45
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.91 E-value=1.2e-09 Score=87.14 Aligned_cols=61 Identities=34% Similarity=0.623 Sum_probs=58.1
Q ss_pred CHHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 1 MLADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
+|+..|.+||+|+. +.+-+|+.|++.+|||||+|.-++.|+-|+++|||..++
T Consensus 129 tiR~AF~PFGPIKS---------------------------InMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlG 181 (544)
T KOG0124|consen 129 TIRRAFDPFGPIKS---------------------------INMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLG 181 (544)
T ss_pred HHHhhccCCCCcce---------------------------eecccccccccccceEEEEEeCcHHHHHHHHHhcccccc
Confidence 47899999999999 999999999999999999999999999999999999999
Q ss_pred CeeEEEEe
Q 033751 81 GRVIFVDN 88 (112)
Q Consensus 81 g~~i~V~~ 88 (112)
||.|+|..
T Consensus 182 GRNiKVgr 189 (544)
T KOG0124|consen 182 GRNIKVGR 189 (544)
T ss_pred CccccccC
Confidence 99999863
No 46
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.87 E-value=3e-09 Score=77.68 Aligned_cols=62 Identities=35% Similarity=0.493 Sum_probs=59.4
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|.++|-+.|+|+. +++++|+.++..+||||++|.++++|+=||+.|+.-.+.|
T Consensus 26 l~EL~iqagpVv~---------------------------i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYg 78 (203)
T KOG0131|consen 26 LYELFIQAGPVVN---------------------------LHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYG 78 (203)
T ss_pred HHHHHHhcCceee---------------------------eecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcC
Confidence 6789999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEecc
Q 033751 82 RVIFVDNVR 90 (112)
Q Consensus 82 ~~i~V~~a~ 90 (112)
++|+|..+.
T Consensus 79 rpIrv~kas 87 (203)
T KOG0131|consen 79 RPIRVNKAS 87 (203)
T ss_pred ceeEEEecc
Confidence 999999886
No 47
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.87 E-value=5.3e-09 Score=86.52 Aligned_cols=68 Identities=35% Similarity=0.586 Sum_probs=61.1
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+.+|+.||.|.+ +.|++.++ |+.+|||||.|....+|..|+..+||..|+|
T Consensus 134 Lk~vFs~~G~V~E---------------------------i~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~g 185 (678)
T KOG0127|consen 134 LKNVFSNFGKVVE---------------------------IVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDG 185 (678)
T ss_pred HHHHHhhcceEEE---------------------------EEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecC
Confidence 7889999999999 99998774 5555999999999999999999999999999
Q ss_pred eeEEEEeccCCCCCCC
Q 033751 82 RVIFVDNVRPSRRYNT 97 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~~ 97 (112)
|+|.|+||.+...+..
T Consensus 186 R~VAVDWAV~Kd~ye~ 201 (678)
T KOG0127|consen 186 RPVAVDWAVDKDTYED 201 (678)
T ss_pred ceeEEeeecccccccc
Confidence 9999999987766544
No 48
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.85 E-value=6e-09 Score=77.13 Aligned_cols=51 Identities=31% Similarity=0.434 Sum_probs=48.0
Q ss_pred EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeeEEEEeccCC
Q 033751 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92 (112)
Q Consensus 42 ~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 92 (112)
.++-+++.||.++|||||+|.+++.|.-|-+.||++.++++.|.|.+..+.
T Consensus 80 ~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 80 FRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred EEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 788899999999999999999999999999999999999999999887665
No 49
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.83 E-value=5.7e-09 Score=85.88 Aligned_cols=65 Identities=40% Similarity=0.691 Sum_probs=60.7
Q ss_pred CHHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 1 MLADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
||+.+|++||.|.. +.+.+|.+||+++||+||+|.+.++|++|+.+|||.+|-
T Consensus 294 ~lr~ifepfg~Ie~---------------------------v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelA 346 (549)
T KOG0147|consen 294 MLRGIFEPFGKIEN---------------------------VQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELA 346 (549)
T ss_pred HHhhhccCccccee---------------------------eeeccccccccccCcceEEEecHHHHHHHHHHhccceec
Confidence 57889999999999 999999999999999999999999999999999999999
Q ss_pred CeeEEEEeccCC
Q 033751 81 GRVIFVDNVRPS 92 (112)
Q Consensus 81 g~~i~V~~a~~~ 92 (112)
|+.|+|...+.+
T Consensus 347 Gr~ikV~~v~~r 358 (549)
T KOG0147|consen 347 GRLIKVSVVTER 358 (549)
T ss_pred CceEEEEEeeee
Confidence 999999877543
No 50
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=1.3e-08 Score=81.30 Aligned_cols=64 Identities=34% Similarity=0.480 Sum_probs=59.5
Q ss_pred CHHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 1 MLADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
||.+.|+++|+++. +++++|- | +-|||||.|.++++|.+|+..||...+.
T Consensus 14 ~l~~~f~~~~~v~s---------------------------~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~ 63 (369)
T KOG0123|consen 14 MLFDKFSPAGPVLS---------------------------IRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLK 63 (369)
T ss_pred HHHHHhcccCCcee---------------------------EEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccC
Confidence 58899999999999 9999998 6 9999999999999999999999999999
Q ss_pred CeeEEEEeccCCCC
Q 033751 81 GRVIFVDNVRPSRR 94 (112)
Q Consensus 81 g~~i~V~~a~~~~~ 94 (112)
|++|++.|+.....
T Consensus 64 ~~~~rim~s~rd~~ 77 (369)
T KOG0123|consen 64 GKPIRIMWSQRDPS 77 (369)
T ss_pred CcEEEeehhccCCc
Confidence 99999999975543
No 51
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.76 E-value=1.3e-08 Score=84.19 Aligned_cols=69 Identities=33% Similarity=0.664 Sum_probs=63.5
Q ss_pred CHHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 1 MLADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
+|.++|+..|+|.. |.++.++.++.+|||+||+|...++++.|+....++.+.
T Consensus 21 qL~e~FS~vGPik~---------------------------~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~ 73 (678)
T KOG0127|consen 21 QLEEFFSYVGPIKH---------------------------AVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFE 73 (678)
T ss_pred HHHHhhhcccCcce---------------------------eEEecCCCcccccCccceeeehHhHHHHHHHHhhcCccc
Confidence 47889999999999 999999999999999999999999999999999999999
Q ss_pred CeeEEEEeccCCCCCC
Q 033751 81 GRVIFVDNVRPSRRYN 96 (112)
Q Consensus 81 g~~i~V~~a~~~~~~~ 96 (112)
|+.|+|+.+..+.+..
T Consensus 74 Gr~l~v~~A~~R~r~e 89 (678)
T KOG0127|consen 74 GRILNVDPAKKRARSE 89 (678)
T ss_pred ceecccccccccccch
Confidence 9999999997665543
No 52
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.76 E-value=3.4e-08 Score=74.79 Aligned_cols=59 Identities=20% Similarity=0.288 Sum_probs=52.8
Q ss_pred CHHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 1 MLADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
.|+++|+.||+|.. ++|++|. +.+|+|||+|.++++++.|+. |+|..|.
T Consensus 21 dLrefFS~~G~I~~---------------------------V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~ 69 (243)
T PLN03121 21 DVYDFFSHCGAIEH---------------------------VEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIV 69 (243)
T ss_pred HHHHHHHhcCCeEE---------------------------EEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeC
Confidence 37899999999999 9999984 445899999999999999996 9999999
Q ss_pred CeeEEEEecc
Q 033751 81 GRVIFVDNVR 90 (112)
Q Consensus 81 g~~i~V~~a~ 90 (112)
+++|.|....
T Consensus 70 d~~I~It~~~ 79 (243)
T PLN03121 70 DQRVCITRWG 79 (243)
T ss_pred CceEEEEeCc
Confidence 9999997754
No 53
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.76 E-value=1.3e-08 Score=82.42 Aligned_cols=60 Identities=37% Similarity=0.588 Sum_probs=54.1
Q ss_pred CHHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 1 MLADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
+|+++|+.||.|.+ ++.++| ||||+|.+-++|.+|++.+||++|+
T Consensus 275 ~lk~~F~~~G~veR---------------------------Vkk~rD--------YaFVHf~eR~davkAm~~~ngkeld 319 (506)
T KOG0117|consen 275 TLKKLFNEFGKVER---------------------------VKKPRD--------YAFVHFAEREDAVKAMKETNGKELD 319 (506)
T ss_pred HHHHHHHhccceEE---------------------------eecccc--------eeEEeecchHHHHHHHHHhcCceec
Confidence 48999999999999 776655 9999999999999999999999999
Q ss_pred CeeEEEEeccCCCCC
Q 033751 81 GRVIFVDNVRPSRRY 95 (112)
Q Consensus 81 g~~i~V~~a~~~~~~ 95 (112)
|..|.|.+|+|....
T Consensus 320 G~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 320 GSPIEVTLAKPVDKK 334 (506)
T ss_pred CceEEEEecCChhhh
Confidence 999999999876543
No 54
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.74 E-value=3.7e-08 Score=72.53 Aligned_cols=61 Identities=21% Similarity=0.384 Sum_probs=52.5
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|.+||.|.+ +.|... -..-.||||+|.++.+|+.||..-||..++|
T Consensus 23 ieDlFyKyg~i~~---------------------------ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg 72 (241)
T KOG0105|consen 23 IEDLFYKYGRIRE---------------------------IELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDG 72 (241)
T ss_pred HHHHHhhhcceEE---------------------------EEeccC---CCCCCeeEEEecCccchhhhhhcccccccCc
Confidence 6899999999999 665322 2345799999999999999999999999999
Q ss_pred eeEEEEeccCC
Q 033751 82 RVIFVDNVRPS 92 (112)
Q Consensus 82 ~~i~V~~a~~~ 92 (112)
.+|+|+++...
T Consensus 73 ~rLRVEfprgg 83 (241)
T KOG0105|consen 73 CRLRVEFPRGG 83 (241)
T ss_pred ceEEEEeccCC
Confidence 99999999754
No 55
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.74 E-value=4e-08 Score=82.36 Aligned_cols=59 Identities=36% Similarity=0.682 Sum_probs=52.4
Q ss_pred CHHHHhhcc--CcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCce
Q 033751 1 MLADAFSQF--GQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKL 78 (112)
Q Consensus 1 ~l~~~f~~~--G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~ 78 (112)
.|+++|++| |.|.+ ++++ ++||||+|.+.++|++|+..|||..
T Consensus 249 ~L~~~F~~f~~G~I~r---------------------------V~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~ 293 (578)
T TIGR01648 249 IIEKSFSEFKPGKVER---------------------------VKKI--------RDYAFVHFEDREDAVKAMDELNGKE 293 (578)
T ss_pred HHHHHHHhcCCCceEE---------------------------EEee--------cCeEEEEeCCHHHHHHHHHHhCCCE
Confidence 378999999 99988 7654 4699999999999999999999999
Q ss_pred eCCeeEEEEeccCCCC
Q 033751 79 LDGRVIFVDNVRPSRR 94 (112)
Q Consensus 79 l~g~~i~V~~a~~~~~ 94 (112)
|+|+.|.|+++++...
T Consensus 294 i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 294 LEGSEIEVTLAKPVDK 309 (578)
T ss_pred ECCEEEEEEEccCCCc
Confidence 9999999999976543
No 56
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.73 E-value=4.6e-08 Score=79.90 Aligned_cols=59 Identities=22% Similarity=0.332 Sum_probs=51.7
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.+ +.|+++.. .|+|||+|.++++|.+|+..|||..+.+
T Consensus 113 L~~~F~~~G~V~~---------------------------v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~ 161 (481)
T TIGR01649 113 LYQIFNPYGKVLR---------------------------IVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYN 161 (481)
T ss_pred HHHHHhccCCEEE---------------------------EEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccC
Confidence 7899999999999 88877642 4799999999999999999999999975
Q ss_pred --eeEEEEeccC
Q 033751 82 --RVIFVDNVRP 91 (112)
Q Consensus 82 --~~i~V~~a~~ 91 (112)
+.|+|++++.
T Consensus 162 ~~~~l~v~~sk~ 173 (481)
T TIGR01649 162 GCCTLKIEYAKP 173 (481)
T ss_pred CceEEEEEEecC
Confidence 5888888865
No 57
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.73 E-value=2.8e-08 Score=77.15 Aligned_cols=68 Identities=26% Similarity=0.499 Sum_probs=58.8
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+.+|++||.|.+ |.|+++ ||||+..+...++.||..|||..|+|
T Consensus 19 lr~lFe~ygkVlE---------------------------CDIvKN--------YgFVHiEdktaaedairNLhgYtLhg 63 (346)
T KOG0109|consen 19 LRSLFEQYGKVLE---------------------------CDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHG 63 (346)
T ss_pred HHHHHHhhCceEe---------------------------eeeecc--------cceEEeecccccHHHHhhcccceecc
Confidence 7889999999999 999887 89999999999999999999999999
Q ss_pred eeEEEEeccCCCCCCCCCCCcCC
Q 033751 82 RVIFVDNVRPSRRYNTDAPLARQ 104 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~~~~~~~~~ 104 (112)
..|.|+-++.+..-......+.-
T Consensus 64 ~nInVeaSksKsk~stkl~vgNi 86 (346)
T KOG0109|consen 64 VNINVEASKSKSKASTKLHVGNI 86 (346)
T ss_pred eEEEEEeccccCCCccccccCCC
Confidence 99999998877554444444433
No 58
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1.7e-08 Score=80.17 Aligned_cols=63 Identities=30% Similarity=0.544 Sum_probs=59.9
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|.-+|+.||.|.. |.|++|..||.+--||||+|.+.+++++|.-.|+...|+.
T Consensus 256 LeiIFSrFG~i~s---------------------------ceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDD 308 (479)
T KOG0415|consen 256 LEIIFSRFGKIVS---------------------------CEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDD 308 (479)
T ss_pred hhhHHhhccccee---------------------------eeEEecccccchhheeeeeecchhhHHHHHhhhcceeecc
Confidence 5668999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEeccC
Q 033751 82 RVIFVDNVRP 91 (112)
Q Consensus 82 ~~i~V~~a~~ 91 (112)
++|.|+++++
T Consensus 309 rRIHVDFSQS 318 (479)
T KOG0415|consen 309 RRIHVDFSQS 318 (479)
T ss_pred ceEEeehhhh
Confidence 9999999864
No 59
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=4.6e-08 Score=78.12 Aligned_cols=65 Identities=38% Similarity=0.716 Sum_probs=58.4
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|.+.|+.||+|+. |++..|. .| ++|| ||+|.++++|++||..+||..+.+
T Consensus 93 ~~d~f~~~g~ilS---------------------------~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~ 142 (369)
T KOG0123|consen 93 LYDTFSEFGNILS---------------------------CKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNG 142 (369)
T ss_pred HHHHHHhhcCeeE---------------------------EEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCC
Confidence 6899999999999 9999997 44 9999 999999999999999999999999
Q ss_pred eeEEEEeccCCCCCC
Q 033751 82 RVIFVDNVRPSRRYN 96 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~ 96 (112)
+.|.|....++..+.
T Consensus 143 kki~vg~~~~~~er~ 157 (369)
T KOG0123|consen 143 KKIYVGLFERKEERE 157 (369)
T ss_pred CeeEEeeccchhhhc
Confidence 999998886554443
No 60
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.70 E-value=2.9e-08 Score=76.62 Aligned_cols=64 Identities=27% Similarity=0.474 Sum_probs=57.0
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC-
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD- 80 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~- 80 (112)
++++|..||.|.+ |.+.+.+ .|.++|++||.|.+..+|+.||..|||+..+
T Consensus 36 vrrlf~pfG~~~e---------------------------~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmp 87 (371)
T KOG0146|consen 36 VRRLFQPFGNIEE---------------------------CTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMP 87 (371)
T ss_pred HHHHhcccCCcce---------------------------eEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCC
Confidence 5789999999999 9998887 6899999999999999999999999999976
Q ss_pred --CeeEEEEeccCCC
Q 033751 81 --GRVIFVDNVRPSR 93 (112)
Q Consensus 81 --g~~i~V~~a~~~~ 93 (112)
...+.|+++...+
T Consensus 88 GASSSLVVK~ADTdk 102 (371)
T KOG0146|consen 88 GASSSLVVKFADTDK 102 (371)
T ss_pred CCccceEEEeccchH
Confidence 4689999986443
No 61
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.69 E-value=2.2e-08 Score=77.67 Aligned_cols=63 Identities=25% Similarity=0.490 Sum_probs=56.9
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+..|++||++.+ |.|++| |+||+|.-.++|..||..||++++.|
T Consensus 95 lRa~fe~ygpvie---------------------------cdivkd--------y~fvh~d~~eda~~air~l~~~~~~g 139 (346)
T KOG0109|consen 95 LRAKFEKYGPVIE---------------------------CDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQG 139 (346)
T ss_pred HhhhhcccCCcee---------------------------eeeecc--------eeEEEEeeccchHHHHhccccccccc
Confidence 6788999999999 999877 99999999999999999999999999
Q ss_pred eeEEEEeccCCCCCCCCC
Q 033751 82 RVIFVDNVRPSRRYNTDA 99 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~~~~ 99 (112)
+++.|.+++++-+-.++.
T Consensus 140 k~m~vq~stsrlrtapgm 157 (346)
T KOG0109|consen 140 KRMHVQLSTSRLRTAPGM 157 (346)
T ss_pred ceeeeeeeccccccCCCC
Confidence 999999998876655543
No 62
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.66 E-value=3.5e-08 Score=72.10 Aligned_cols=70 Identities=29% Similarity=0.513 Sum_probs=61.6
Q ss_pred CHHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 1 MLADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
+|.+.|++||.+.. .-.+++|..||.++|+|||.|.+.+.+.+|+..|+|..+.
T Consensus 112 ~L~dtFsafG~l~~--------------------------~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~ 165 (203)
T KOG0131|consen 112 LLYDTFSAFGVLIS--------------------------PPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLC 165 (203)
T ss_pred HHHHHHHhcccccc--------------------------CCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhc
Confidence 47889999999876 1478999999999999999999999999999999999999
Q ss_pred CeeEEEEeccCCCCCC
Q 033751 81 GRVIFVDNVRPSRRYN 96 (112)
Q Consensus 81 g~~i~V~~a~~~~~~~ 96 (112)
++++.|+.+.....++
T Consensus 166 nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 166 NRPITVSYAFKKDTKG 181 (203)
T ss_pred CCceEEEEEEecCCCc
Confidence 9999999996554443
No 63
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.56 E-value=1.4e-07 Score=70.48 Aligned_cols=62 Identities=24% Similarity=0.430 Sum_probs=54.0
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|..+|++||.|.+ +... .+.+.||-|||.|.+++.|-.|+.+|+|..+.|
T Consensus 30 L~~LFsqfG~ild---------------------------I~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFyg 79 (221)
T KOG4206|consen 30 LYLLFSQFGKILD---------------------------ISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYG 79 (221)
T ss_pred HHHHHHhhCCeEE---------------------------EEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccC
Confidence 5569999999988 4332 367899999999999999999999999999999
Q ss_pred eeEEEEeccCCC
Q 033751 82 RVIFVDNVRPSR 93 (112)
Q Consensus 82 ~~i~V~~a~~~~ 93 (112)
+++++.+|....
T Consensus 80 K~mriqyA~s~s 91 (221)
T KOG4206|consen 80 KPMRIQYAKSDS 91 (221)
T ss_pred chhheecccCcc
Confidence 999999997544
No 64
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.48 E-value=5.1e-07 Score=75.63 Aligned_cols=63 Identities=32% Similarity=0.595 Sum_probs=58.0
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+.+|++||.|+- ++|+++-.+---+.|+||++++.++|.+||..||-++|.|
T Consensus 422 LKnlFSKyGKVvG---------------------------AKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHG 474 (940)
T KOG4661|consen 422 LKNLFSKYGKVVG---------------------------AKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHG 474 (940)
T ss_pred HHHHHHHhcceec---------------------------eeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcc
Confidence 7899999999998 8999987666678899999999999999999999999999
Q ss_pred eeEEEEeccC
Q 033751 82 RVIFVDNVRP 91 (112)
Q Consensus 82 ~~i~V~~a~~ 91 (112)
+.|.|+.++.
T Consensus 475 rmISVEkaKN 484 (940)
T KOG4661|consen 475 RMISVEKAKN 484 (940)
T ss_pred eeeeeeeccc
Confidence 9999998864
No 65
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.47 E-value=2.4e-07 Score=74.12 Aligned_cols=63 Identities=22% Similarity=0.441 Sum_probs=59.2
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+.+|+.||+|+. |.+.+++.++..+||+|++|++..+...||..||-..++|
T Consensus 227 iKSVFEAFG~I~~---------------------------C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGG 279 (544)
T KOG0124|consen 227 IKSVFEAFGEIVK---------------------------CQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGG 279 (544)
T ss_pred HHHHHHhhcceee---------------------------EEeeccCCCCCccceeeEEeccccchHHHhhhcchhhccc
Confidence 6889999999999 9999999888999999999999999999999999999999
Q ss_pred eeEEEEeccC
Q 033751 82 RVIFVDNVRP 91 (112)
Q Consensus 82 ~~i~V~~a~~ 91 (112)
.-++|-.+..
T Consensus 280 QyLRVGk~vT 289 (544)
T KOG0124|consen 280 QYLRVGKCVT 289 (544)
T ss_pred ceEecccccC
Confidence 9999987753
No 66
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.45 E-value=1.3e-07 Score=80.00 Aligned_cols=65 Identities=26% Similarity=0.527 Sum_probs=59.1
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
++.+|.+||++.. ++|+.....+.++|||||+|.++.+|.+|+.+|.++.+.|
T Consensus 630 Vr~LF~aFGqlks---------------------------vRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyG 682 (725)
T KOG0110|consen 630 VRKLFTAFGQLKS---------------------------VRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYG 682 (725)
T ss_pred HHHHHhcccceee---------------------------eccchhhcchhhccceeeeccCcHHHHHHHHhhcccceec
Confidence 6789999999999 8888876677889999999999999999999999999999
Q ss_pred eeEEEEeccCCC
Q 033751 82 RVIFVDNVRPSR 93 (112)
Q Consensus 82 ~~i~V~~a~~~~ 93 (112)
|++.++|+....
T Consensus 683 RrLVLEwA~~d~ 694 (725)
T KOG0110|consen 683 RRLVLEWAKSDN 694 (725)
T ss_pred hhhheehhccch
Confidence 999999997553
No 67
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.37 E-value=1.1e-06 Score=59.42 Aligned_cols=59 Identities=25% Similarity=0.444 Sum_probs=50.3
Q ss_pred HHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCe
Q 033751 3 ADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGR 82 (112)
Q Consensus 3 ~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g~ 82 (112)
-++|.+||+|.. ++|-..+ .-+|-|||.|++..+|++|+.+|.|..++++
T Consensus 36 ydlFGkyg~IrQ---------------------------IRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~r 85 (124)
T KOG0114|consen 36 YDLFGKYGTIRQ---------------------------IRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNR 85 (124)
T ss_pred HHHhhcccceEE---------------------------EEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCc
Confidence 578999999988 6664443 4589999999999999999999999999999
Q ss_pred eEEEEeccC
Q 033751 83 VIFVDNVRP 91 (112)
Q Consensus 83 ~i~V~~a~~ 91 (112)
-+.|-+-.+
T Consensus 86 yl~vlyyq~ 94 (124)
T KOG0114|consen 86 YLVVLYYQP 94 (124)
T ss_pred eEEEEecCH
Confidence 999876543
No 68
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.33 E-value=3.3e-07 Score=71.86 Aligned_cols=66 Identities=35% Similarity=0.587 Sum_probs=59.1
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|++.|++||+|.+ |.+++|+.+++++||+||+|.+++...+++. ..-+.|+|
T Consensus 23 Lr~yf~~~Gev~d---------------------------~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dg 74 (311)
T KOG4205|consen 23 LREYFSQFGEVTD---------------------------CVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDG 74 (311)
T ss_pred HHHHhcccCceee---------------------------EEEeccCCCCCcccccceecCCCcchheeec-ccccccCC
Confidence 7899999999999 9999999999999999999999999988887 44578999
Q ss_pred eeEEEEeccCCCCC
Q 033751 82 RVIFVDNVRPSRRY 95 (112)
Q Consensus 82 ~~i~V~~a~~~~~~ 95 (112)
+.|.+..|.++...
T Consensus 75 r~ve~k~av~r~~~ 88 (311)
T KOG4205|consen 75 RSVEPKRAVSREDQ 88 (311)
T ss_pred ccccceeccCcccc
Confidence 99999998776544
No 69
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.33 E-value=1.8e-06 Score=73.18 Aligned_cols=62 Identities=35% Similarity=0.530 Sum_probs=51.9
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCC---CcccEEEEEeCCHHHHHHHHHhhCCce
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKN---RSKGYGYVTFSTEEEAQKALADMNGKL 78 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~---~~rG~afV~f~~~~~a~~Ai~~l~g~~ 78 (112)
+..+|.+.|.|.. +.|.+-+... -+.|||||+|.++++|++|+..|+|+.
T Consensus 532 l~~~F~k~G~VlS---------------------------~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtv 584 (725)
T KOG0110|consen 532 LEDLFSKQGTVLS---------------------------IEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTV 584 (725)
T ss_pred HHHHHHhcCeEEE---------------------------EEEeccccccccccccceeEEEecCHHHHHHHHHHhcCce
Confidence 5678888999888 6555544221 356999999999999999999999999
Q ss_pred eCCeeEEEEecc
Q 033751 79 LDGRVIFVDNVR 90 (112)
Q Consensus 79 l~g~~i~V~~a~ 90 (112)
|+|+.|.|+++-
T Consensus 585 ldGH~l~lk~S~ 596 (725)
T KOG0110|consen 585 LDGHKLELKISE 596 (725)
T ss_pred ecCceEEEEecc
Confidence 999999999987
No 70
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.32 E-value=2.9e-07 Score=70.35 Aligned_cols=52 Identities=35% Similarity=0.582 Sum_probs=48.5
Q ss_pred EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeeEEEEeccCCC
Q 033751 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93 (112)
Q Consensus 42 ~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 93 (112)
.++++|+.||+++||+||.|.+++++..|...|||.-++.+.|.++.+..+.
T Consensus 220 akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 220 AKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred ccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhHHh
Confidence 8999999999999999999999999999999999999999999988775544
No 71
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.19 E-value=3.8e-06 Score=68.59 Aligned_cols=49 Identities=27% Similarity=0.488 Sum_probs=45.4
Q ss_pred EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeeEEEEeccC
Q 033751 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91 (112)
Q Consensus 42 ~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~ 91 (112)
|.+..|. +|++||+|.|+|.+++.+++|++.||-+.+.|++|.|+-...
T Consensus 75 veLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 75 VELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred eeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 8888996 899999999999999999999999999999999999986643
No 72
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.11 E-value=6.9e-06 Score=62.01 Aligned_cols=48 Identities=33% Similarity=0.481 Sum_probs=45.0
Q ss_pred EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeeEEEEecc
Q 033751 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 90 (112)
Q Consensus 42 ~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~ 90 (112)
+.|..|+.++.++||+||+|.+.+.+++|+. |||..+.++.+.|...+
T Consensus 131 ~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 131 VTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKR 178 (231)
T ss_pred eeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeee
Confidence 7899999898999999999999999999999 99999999999988765
No 73
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.11 E-value=3.2e-06 Score=66.35 Aligned_cols=66 Identities=30% Similarity=0.578 Sum_probs=59.8
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
+++.|++||.|.+ +.++.|..+.+++||+||+|.+++++.+++. .+.+.|.+
T Consensus 114 ~r~yfe~~g~v~~---------------------------~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~g 165 (311)
T KOG4205|consen 114 FKDYFEQFGKVAD---------------------------VVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNG 165 (311)
T ss_pred HhhhhhccceeEe---------------------------eEEeecccccccccceeeEeccccccceecc-cceeeecC
Confidence 6789999999999 9999999999999999999999999999987 77899999
Q ss_pred eeEEEEeccCCCCC
Q 033751 82 RVIFVDNVRPSRRY 95 (112)
Q Consensus 82 ~~i~V~~a~~~~~~ 95 (112)
+.+.|+.|.++...
T Consensus 166 k~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 166 KKVEVKRAIPKEVM 179 (311)
T ss_pred ceeeEeeccchhhc
Confidence 99999999765443
No 74
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.89 E-value=1.7e-05 Score=65.80 Aligned_cols=61 Identities=36% Similarity=0.554 Sum_probs=57.4
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|.++|+..|.|.+ ++++.|+.+++++|.+||+|.++.....||. |.|..+.|
T Consensus 196 L~efFs~~gkVrd---------------------------VriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg 247 (549)
T KOG0147|consen 196 LEEFFSIVGKVRD---------------------------VRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLG 247 (549)
T ss_pred HHHHHHhhcCcce---------------------------eEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccC
Confidence 6789999999999 9999999999999999999999999999996 99999999
Q ss_pred eeEEEEecc
Q 033751 82 RVIFVDNVR 90 (112)
Q Consensus 82 ~~i~V~~a~ 90 (112)
-+|.|....
T Consensus 248 ~pv~vq~sE 256 (549)
T KOG0147|consen 248 VPVIVQLSE 256 (549)
T ss_pred ceeEecccH
Confidence 999998764
No 75
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=4.1e-05 Score=64.12 Aligned_cols=65 Identities=29% Similarity=0.536 Sum_probs=55.2
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC-
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD- 80 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~- 80 (112)
|..+|+++|+|+- .-++-+.++| .+||.|++|.+..+|+.|++.|||+.++
T Consensus 81 l~kvfsk~gk~vn---------------------------~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 81 LTKVFSKAGKIVN---------------------------MYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred HHHHHHhhccccc---------------------------eeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecc
Confidence 6789999999988 6777776554 9999999999999999999999999997
Q ss_pred CeeEEEEeccCCCC
Q 033751 81 GRVIFVDNVRPSRR 94 (112)
Q Consensus 81 g~~i~V~~a~~~~~ 94 (112)
++...|...+.-.+
T Consensus 133 nHtf~v~~f~d~ek 146 (698)
T KOG2314|consen 133 NHTFFVRLFKDFEK 146 (698)
T ss_pred cceEEeehhhhHHH
Confidence 78888887654433
No 76
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.79 E-value=6.9e-05 Score=57.04 Aligned_cols=61 Identities=30% Similarity=0.594 Sum_probs=55.7
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|..||.+.. +.|-.|+ .|++.|.|-|.|..-++|..|+..++|..++|
T Consensus 100 l~eLF~~~~~~~r---------------------------~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG 151 (243)
T KOG0533|consen 100 LKELFAEFGELKR---------------------------VAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDG 151 (243)
T ss_pred HHHHHHHhccceE---------------------------EeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCC
Confidence 7899999998888 7788886 89999999999999999999999999999999
Q ss_pred eeEEEEecc
Q 033751 82 RVIFVDNVR 90 (112)
Q Consensus 82 ~~i~V~~a~ 90 (112)
++|.+....
T Consensus 152 ~~mk~~~i~ 160 (243)
T KOG0533|consen 152 RPMKIEIIS 160 (243)
T ss_pred ceeeeEEec
Confidence 999988764
No 77
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.69 E-value=4.4e-05 Score=57.18 Aligned_cols=57 Identities=30% Similarity=0.670 Sum_probs=49.4
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|.++|..||++.+ +.| ..||+||+|.+..+|..|+..+||..+.+
T Consensus 18 ~E~~f~~yg~~~d---------------------------~~m--------k~gf~fv~fed~rda~Dav~~l~~~~l~~ 62 (216)
T KOG0106|consen 18 VERFFKGYGKIPD---------------------------ADM--------KNGFGFVEFEDPRDADDAVHDLDGKELCG 62 (216)
T ss_pred HHHHHhhcccccc---------------------------cee--------ecccceeccCchhhhhcccchhcCceecc
Confidence 6788999999988 654 45799999999999999999999999999
Q ss_pred eeEEEEeccCCC
Q 033751 82 RVIFVDNVRPSR 93 (112)
Q Consensus 82 ~~i~V~~a~~~~ 93 (112)
-.+.|++++...
T Consensus 63 e~~vve~~r~~~ 74 (216)
T KOG0106|consen 63 ERLVVEHARGKR 74 (216)
T ss_pred eeeeeecccccc
Confidence 889999988543
No 78
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.54 E-value=0.00034 Score=55.60 Aligned_cols=57 Identities=32% Similarity=0.520 Sum_probs=47.5
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCC-ceeC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNG-KLLD 80 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g-~~l~ 80 (112)
|+++|.+||+|.. +++...+ ++|||+|.+-.+|+.|....-. ..|+
T Consensus 245 IrdhFyqyGeirs---------------------------i~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~ 291 (377)
T KOG0153|consen 245 IRDHFYQYGEIRS---------------------------IRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVIN 291 (377)
T ss_pred HHHHHhhcCCeee---------------------------EEeeccc------ccceeeehhhHHHHHHHHhhcceeeec
Confidence 6889999999988 7765553 5999999999999988876544 3479
Q ss_pred CeeEEEEeccC
Q 033751 81 GRVIFVDNVRP 91 (112)
Q Consensus 81 g~~i~V~~a~~ 91 (112)
|.+|.|.|..+
T Consensus 292 G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 292 GFRLKIKWGRP 302 (377)
T ss_pred ceEEEEEeCCC
Confidence 99999999987
No 79
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.52 E-value=0.00032 Score=57.12 Aligned_cols=63 Identities=27% Similarity=0.501 Sum_probs=49.2
Q ss_pred CHHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 1 MLADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
+|+.+|..||+|.+ ..|......++...||||+|.+.++++.||.+- -..++
T Consensus 304 ~l~~~Fk~FG~Ik~---------------------------~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig 355 (419)
T KOG0116|consen 304 ELEEVFKQFGPIKE---------------------------GGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIG 355 (419)
T ss_pred HHHHHHhhcccccc---------------------------cceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccC
Confidence 47899999999998 444443323444489999999999999999954 56688
Q ss_pred CeeEEEEeccC
Q 033751 81 GRVIFVDNVRP 91 (112)
Q Consensus 81 g~~i~V~~a~~ 91 (112)
++++.|+--++
T Consensus 356 ~~kl~Veek~~ 366 (419)
T KOG0116|consen 356 GRKLNVEEKRP 366 (419)
T ss_pred CeeEEEEeccc
Confidence 99999987654
No 80
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.48 E-value=0.00014 Score=59.57 Aligned_cols=57 Identities=47% Similarity=0.628 Sum_probs=49.1
Q ss_pred CHHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 1 MLADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
||++-|..||.|.. +.| + +.|+++| .|.|.++++|+.|+..|+|..++
T Consensus 552 mlrDKfre~G~v~y---------------------------adi-m--e~GkskG--VVrF~s~edAEra~a~Mngs~l~ 599 (608)
T KOG4212|consen 552 MLRDKFREIGHVLY---------------------------ADI-M--ENGKSKG--VVRFFSPEDAERACALMNGSRLD 599 (608)
T ss_pred HHHHHHHhccceeh---------------------------hhh-h--ccCCccc--eEEecCHHHHHHHHHHhccCccc
Confidence 57888888998877 666 2 3578887 89999999999999999999999
Q ss_pred CeeEEEEec
Q 033751 81 GRVIFVDNV 89 (112)
Q Consensus 81 g~~i~V~~a 89 (112)
|+.|.|.+.
T Consensus 600 Gr~I~V~y~ 608 (608)
T KOG4212|consen 600 GRNIKVTYF 608 (608)
T ss_pred CceeeeeeC
Confidence 999999763
No 81
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.44 E-value=0.00051 Score=55.83 Aligned_cols=58 Identities=24% Similarity=0.400 Sum_probs=52.6
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|..+|+.||.|.+ ++|...+. .-|.|.|.+...|+-|+++|+|..+.|
T Consensus 315 LftlFgvYGdVqR---------------------------Vkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~g 362 (492)
T KOG1190|consen 315 LFTLFGVYGDVQR---------------------------VKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYG 362 (492)
T ss_pred HHHHHhhhcceEE---------------------------EEeeecCC-----cceeeeecchhHHHHHHHHhhcceecC
Confidence 5678999999999 99887752 579999999999999999999999999
Q ss_pred eeEEEEeccC
Q 033751 82 RVIFVDNVRP 91 (112)
Q Consensus 82 ~~i~V~~a~~ 91 (112)
+.|+|.+++.
T Consensus 363 k~lrvt~SKH 372 (492)
T KOG1190|consen 363 KKLRVTLSKH 372 (492)
T ss_pred ceEEEeeccC
Confidence 9999999874
No 82
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=97.43 E-value=0.00035 Score=60.32 Aligned_cols=61 Identities=20% Similarity=0.404 Sum_probs=53.0
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|..+|+.||+|.. +.++ ..+|+|||.+.+-.+|.+|+.+|....+.+
T Consensus 438 L~~~feefGeiqS---------------------------i~li------~~R~cAfI~M~~RqdA~kalqkl~n~kv~~ 484 (894)
T KOG0132|consen 438 LANLFEEFGEIQS---------------------------IILI------PPRGCAFIKMVRRQDAEKALQKLSNVKVAD 484 (894)
T ss_pred HHHHHHhccccee---------------------------Eeec------cCCceeEEEEeehhHHHHHHHHHhcccccc
Confidence 7889999999988 6653 356899999999999999999999999999
Q ss_pred eeEEEEeccCCCCC
Q 033751 82 RVIFVDNVRPSRRY 95 (112)
Q Consensus 82 ~~i~V~~a~~~~~~ 95 (112)
+.|+|.|+.....+
T Consensus 485 k~Iki~Wa~g~G~k 498 (894)
T KOG0132|consen 485 KTIKIAWAVGKGPK 498 (894)
T ss_pred eeeEEeeeccCCcc
Confidence 99999999755433
No 83
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.31 E-value=0.0001 Score=61.25 Aligned_cols=52 Identities=25% Similarity=0.470 Sum_probs=46.7
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|..+|+.||+|.. ++. +-..+|..||+|.+..+|+.|+++|++..+.|
T Consensus 92 L~~~f~~yGeir~---------------------------ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~ 139 (549)
T KOG4660|consen 92 LLRIFGAYGEIRE---------------------------IRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAG 139 (549)
T ss_pred HHHHHHhhcchhh---------------------------hhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhh
Confidence 7889999999988 654 55678999999999999999999999999999
Q ss_pred eeEE
Q 033751 82 RVIF 85 (112)
Q Consensus 82 ~~i~ 85 (112)
++|.
T Consensus 140 ~~~k 143 (549)
T KOG4660|consen 140 KRIK 143 (549)
T ss_pred hhhc
Confidence 9887
No 84
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.29 E-value=0.00021 Score=56.76 Aligned_cols=52 Identities=25% Similarity=0.267 Sum_probs=48.5
Q ss_pred EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeeEEEEeccCCC
Q 033751 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93 (112)
Q Consensus 42 ~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 93 (112)
+.|.+|++|++.+|-|.|+|.++..|++||..+++..+.+..|.|.+|..++
T Consensus 104 i~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 104 IKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIKVSLAERRT 155 (351)
T ss_pred hhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCCchhhhhhhcc
Confidence 7889999999999999999999999999999999999999999999886544
No 85
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.26 E-value=0.0002 Score=59.34 Aligned_cols=52 Identities=19% Similarity=0.405 Sum_probs=47.5
Q ss_pred EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeeEEEEeccCCC
Q 033751 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93 (112)
Q Consensus 42 ~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 93 (112)
-.++.|..+|-++||||.+|.++.....|+..|||.+++++.+.|..|....
T Consensus 319 f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 319 FRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGA 370 (500)
T ss_pred heeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccc
Confidence 6788898899999999999999999999999999999999999999886443
No 86
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.25 E-value=0.00098 Score=55.36 Aligned_cols=62 Identities=19% Similarity=0.376 Sum_probs=50.6
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCC---CCcccEEEEEeCCHHHHHHHHHhhCCce
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGK---NRSKGYGYVTFSTEEEAQKALADMNGKL 78 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t---~~~rG~afV~f~~~~~a~~Ai~~l~g~~ 78 (112)
++...++||.|.. |.+.++... .-..|--||+|.+.+++++|.++|+|.+
T Consensus 426 vr~ec~k~g~v~~---------------------------v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrK 478 (500)
T KOG0120|consen 426 VRTECAKFGAVRS---------------------------VEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRK 478 (500)
T ss_pred HHHHhcccCceeE---------------------------EecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCce
Confidence 4567788888888 777777222 2345889999999999999999999999
Q ss_pred eCCeeEEEEecc
Q 033751 79 LDGRVIFVDNVR 90 (112)
Q Consensus 79 l~g~~i~V~~a~ 90 (112)
+.|+.|...+-.
T Consensus 479 F~nRtVvtsYyd 490 (500)
T KOG0120|consen 479 FANRTVVASYYD 490 (500)
T ss_pred eCCcEEEEEecC
Confidence 999999888754
No 87
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.20 E-value=0.00082 Score=53.72 Aligned_cols=33 Identities=42% Similarity=0.774 Sum_probs=30.6
Q ss_pred EEEeCCHHHHHHHHHhhCCceeCCeeEEEEecc
Q 033751 58 YVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 90 (112)
Q Consensus 58 fV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~ 90 (112)
+|+|.+.++|..||.+.||+.++|+.|+..+-+
T Consensus 169 YITy~~kedAarcIa~vDgs~~DGr~lkatYGT 201 (480)
T COG5175 169 YITYSTKEDAARCIAEVDGSLLDGRVLKATYGT 201 (480)
T ss_pred EEEecchHHHHHHHHHhccccccCceEeeecCc
Confidence 899999999999999999999999999987643
No 88
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.20 E-value=0.0014 Score=52.28 Aligned_cols=71 Identities=18% Similarity=0.258 Sum_probs=58.2
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
+.++|+++|-|.+.- ++ .-+.|++.++. .|..+|=|.+.|...+++.-|+..||+..+.|
T Consensus 151 ~~~~~sKcGiI~~d~-------~t------------~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 151 FAEVMSKCGIIMRDP-------QT------------GEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred HHHHHHhcceEeccC-------CC------------CCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 356788888887610 11 11238999997 59999999999999999999999999999999
Q ss_pred eeEEEEeccCC
Q 033751 82 RVIFVDNVRPS 92 (112)
Q Consensus 82 ~~i~V~~a~~~ 92 (112)
+.|+|+.|+-.
T Consensus 211 ~~~rVerAkfq 221 (382)
T KOG1548|consen 211 KKLRVERAKFQ 221 (382)
T ss_pred cEEEEehhhhh
Confidence 99999999643
No 89
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.03 E-value=0.0032 Score=47.88 Aligned_cols=43 Identities=21% Similarity=0.425 Sum_probs=37.6
Q ss_pred cccEEEEEeCCHHHHHHHHHhhCCceeC---CeeEEEEeccCCCCC
Q 033751 53 SKGYGYVTFSTEEEAQKALADMNGKLLD---GRVIFVDNVRPSRRY 95 (112)
Q Consensus 53 ~rG~afV~f~~~~~a~~Ai~~l~g~~l~---g~~i~V~~a~~~~~~ 95 (112)
.+-+||++|.+..+|++|.++|||..++ +..++++++++..+.
T Consensus 76 ~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElAKSNtK~ 121 (284)
T KOG1457|consen 76 CKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELAKSNTKR 121 (284)
T ss_pred ccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeehhcCccc
Confidence 4579999999999999999999999997 789999999765544
No 90
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=96.98 E-value=0.00068 Score=51.30 Aligned_cols=59 Identities=27% Similarity=0.255 Sum_probs=50.6
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|.++|-+-|+|.+ +.|..++ -++.+ ||||.|.++.+.+-|+.-+||-.+.+
T Consensus 26 L~ElfiqaGPV~k---------------------------v~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~ 76 (267)
T KOG4454|consen 26 LSELFIQAGPVYK---------------------------VGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEE 76 (267)
T ss_pred HHHHhhccCceEE---------------------------EeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhcc
Confidence 5678888999988 8777776 45666 99999999999999999999999999
Q ss_pred eeEEEEec
Q 033751 82 RVIFVDNV 89 (112)
Q Consensus 82 ~~i~V~~a 89 (112)
.++.+.+-
T Consensus 77 ~e~q~~~r 84 (267)
T KOG4454|consen 77 DEEQRTLR 84 (267)
T ss_pred chhhcccc
Confidence 88888664
No 91
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.88 E-value=0.0034 Score=41.57 Aligned_cols=49 Identities=22% Similarity=0.348 Sum_probs=42.5
Q ss_pred EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC----CeeEEEEecc
Q 033751 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD----GRVIFVDNVR 90 (112)
Q Consensus 42 ~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~----g~~i~V~~a~ 90 (112)
.-++.|..++...|||||.|.+++.+..-...++|.... .+.+.|.+|+
T Consensus 33 ~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~yAr 85 (97)
T PF04059_consen 33 FYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEISYAR 85 (97)
T ss_pred EEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEehhH
Confidence 678889888899999999999999999999999999875 5666777775
No 92
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.82 E-value=0.0061 Score=43.22 Aligned_cols=54 Identities=30% Similarity=0.506 Sum_probs=42.1
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|.+.|..||.+.- +|.+-+ --.|+|.+-.+|-+|+. ++|.++.|
T Consensus 53 ll~~~~~~GevvL---------------------------vRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g 96 (146)
T PF08952_consen 53 LLQKFAQYGEVVL---------------------------VRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNG 96 (146)
T ss_dssp HHHHHHCCS-ECE---------------------------EEEETT--------CEEEEESSCHHHHHHHH-GCCSEETT
T ss_pred HHHHHHhCCceEE---------------------------EEEeCC--------eEEEEECccHHHHHHHc-cCCcEECC
Confidence 4567888888777 666544 36899999999999998 99999999
Q ss_pred eeEEEEeccC
Q 033751 82 RVIFVDNVRP 91 (112)
Q Consensus 82 ~~i~V~~a~~ 91 (112)
+.|.|++-.+
T Consensus 97 ~~l~i~LKtp 106 (146)
T PF08952_consen 97 RTLKIRLKTP 106 (146)
T ss_dssp EEEEEEE---
T ss_pred EEEEEEeCCc
Confidence 9999988654
No 93
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.71 E-value=0.0082 Score=47.93 Aligned_cols=44 Identities=25% Similarity=0.444 Sum_probs=38.9
Q ss_pred CCcccEEEEEeCCHHHHHHHHHhhCCceeCCeeEEEEeccCCCC
Q 033751 51 NRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94 (112)
Q Consensus 51 ~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~~ 94 (112)
..+.|.+-|.|.+.++|..||..|+|+-++||.|.......+..
T Consensus 311 ~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~ 354 (382)
T KOG1548|consen 311 RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTK 354 (382)
T ss_pred cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcce
Confidence 35789999999999999999999999999999999988765444
No 94
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=96.64 E-value=0.0047 Score=53.26 Aligned_cols=62 Identities=23% Similarity=0.476 Sum_probs=52.7
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeC---CCCCcccEEEEEeCCHHHHHHHHHhhCCce
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDK---GKNRSKGYGYVTFSTEEEAQKALADMNGKL 78 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~---~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~ 78 (112)
|...|..||+|.. ++++..+ +..+.+-++||-|++-.+|++|++.|+|..
T Consensus 191 ll~tfGrfgPlas---------------------------vKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~i 243 (877)
T KOG0151|consen 191 LLRTFGRFGPLAS---------------------------VKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGII 243 (877)
T ss_pred HHHHhcccCcccc---------------------------eeeecccchhhhccccccceeeehhhhhHHHHHHHhccee
Confidence 5567888899988 7777654 344567899999999999999999999999
Q ss_pred eCCeeEEEEecc
Q 033751 79 LDGRVIFVDNVR 90 (112)
Q Consensus 79 l~g~~i~V~~a~ 90 (112)
+++.++++-|.+
T Consensus 244 v~~~e~K~gWgk 255 (877)
T KOG0151|consen 244 VMEYEMKLGWGK 255 (877)
T ss_pred eeeeeeeecccc
Confidence 999999998884
No 95
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.50 E-value=0.011 Score=39.39 Aligned_cols=36 Identities=25% Similarity=0.393 Sum_probs=29.5
Q ss_pred ccEEEEEeCCHHHHHHHHHhhCCceeCCe-eEEEEecc
Q 033751 54 KGYGYVTFSTEEEAQKALADMNGKLLDGR-VIFVDNVR 90 (112)
Q Consensus 54 rG~afV~f~~~~~a~~Ai~~l~g~~l~g~-~i~V~~a~ 90 (112)
..+-.|+|.++.+|++||. -||..+.|. .+.|.++.
T Consensus 54 ~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~mvGV~~~~ 90 (100)
T PF05172_consen 54 GNWIHITYDNPLSAQRALQ-KNGTIFSGSLMVGVKPCD 90 (100)
T ss_dssp TTEEEEEESSHHHHHHHHT-TTTEEETTCEEEEEEE-H
T ss_pred CCEEEEECCCHHHHHHHHH-hCCeEEcCcEEEEEEEcH
Confidence 3588999999999999998 899999885 45677764
No 96
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.46 E-value=0.0023 Score=49.66 Aligned_cols=56 Identities=25% Similarity=0.460 Sum_probs=49.1
Q ss_pred EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeeEEEEeccCCCCCCCC
Q 033751 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98 (112)
Q Consensus 42 ~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~~~~~~ 98 (112)
+++..++.++..+|++++.|.+...+..++.. +...+.++.+.+....+.......
T Consensus 215 ~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 270 (285)
T KOG4210|consen 215 VRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRPKSDGG 270 (285)
T ss_pred eccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCcccccc
Confidence 88999999999999999999999999999987 788899999999988776555433
No 97
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.38 E-value=0.0029 Score=47.47 Aligned_cols=37 Identities=38% Similarity=0.735 Sum_probs=33.7
Q ss_pred cccEEEEEeCCHHHHHHHHHhhCCceeCCeeEEEEec
Q 033751 53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89 (112)
Q Consensus 53 ~rG~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a 89 (112)
..+++||.|...++|..|+..++|.++.++.|.+...
T Consensus 132 ~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 132 RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 4579999999999999999999999999999999654
No 98
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.32 E-value=0.012 Score=38.29 Aligned_cols=37 Identities=27% Similarity=0.297 Sum_probs=29.4
Q ss_pred ccEEEEEeCCHHHHHHHHHhhCCceeCCeeEEEEecc
Q 033751 54 KGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 90 (112)
Q Consensus 54 rG~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~ 90 (112)
.+-|.+.|.+++.|..|.+.|+|..+-|+.|.|++..
T Consensus 39 ~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 39 GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 4789999999999999999999999999999999874
No 99
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.29 E-value=0.0021 Score=49.22 Aligned_cols=41 Identities=34% Similarity=0.542 Sum_probs=36.9
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeeEEEEecc
Q 033751 50 KNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 90 (112)
Q Consensus 50 t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~ 90 (112)
.-...|=.+|.|..+++|++|+..||+.-+.|++|...++.
T Consensus 106 ~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 106 GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34567889999999999999999999999999999998873
No 100
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.32 E-value=0.057 Score=43.88 Aligned_cols=37 Identities=30% Similarity=0.451 Sum_probs=32.7
Q ss_pred EEEEEeCCHHHHHHHHHhhCCceeC-C-eeEEEEeccCC
Q 033751 56 YGYVTFSTEEEAQKALADMNGKLLD-G-RVIFVDNVRPS 92 (112)
Q Consensus 56 ~afV~f~~~~~a~~Ai~~l~g~~l~-g-~~i~V~~a~~~ 92 (112)
.|.|+|++.+.|++|-+.|||..|. | ..|+|++|++.
T Consensus 161 QAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 161 QAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred eeEEeechhHHHHHHHhhcccccccccceeEEEEecCcc
Confidence 6899999999999999999999986 3 58888888765
No 101
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=95.26 E-value=0.045 Score=41.24 Aligned_cols=58 Identities=24% Similarity=0.429 Sum_probs=46.7
Q ss_pred CHHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 1 MLADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
++..+|.+|....+ ++++... .+.|||+|.+...+..|...+.|-.+.
T Consensus 162 ~l~~lf~qf~g~ke---------------------------ir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it 209 (221)
T KOG4206|consen 162 MLSDLFEQFPGFKE---------------------------IRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKIT 209 (221)
T ss_pred HHHHHHhhCcccce---------------------------eEeccCC-----CceeEEecchhhhhHHHhhhhccceec
Confidence 35677888877777 7776653 479999999999999999999998876
Q ss_pred -CeeEEEEecc
Q 033751 81 -GRVIFVDNVR 90 (112)
Q Consensus 81 -g~~i~V~~a~ 90 (112)
.+.|.|..+.
T Consensus 210 ~~~~m~i~~a~ 220 (221)
T KOG4206|consen 210 KKNTMQITFAK 220 (221)
T ss_pred cCceEEecccC
Confidence 7888887663
No 102
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.22 E-value=0.072 Score=43.32 Aligned_cols=58 Identities=21% Similarity=0.290 Sum_probs=50.3
Q ss_pred CHHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 1 MLADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
+|..+|=.||.|.+ ++.++.+ -|-|.|++.+..+.++|+..||+..+-
T Consensus 304 rlFNl~ClYGNV~r---------------------------vkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lf 351 (494)
T KOG1456|consen 304 RLFNLFCLYGNVER---------------------------VKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLF 351 (494)
T ss_pred hhhhhhhhcCceee---------------------------EEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccc
Confidence 35667888999998 8887775 368999999999999999999999999
Q ss_pred CeeEEEEecc
Q 033751 81 GRVIFVDNVR 90 (112)
Q Consensus 81 g~~i~V~~a~ 90 (112)
|.+|.|.+++
T Consensus 352 G~kl~v~~Sk 361 (494)
T KOG1456|consen 352 GGKLNVCVSK 361 (494)
T ss_pred cceEEEeecc
Confidence 9999998875
No 103
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.20 E-value=0.071 Score=42.10 Aligned_cols=61 Identities=25% Similarity=0.351 Sum_probs=45.6
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCc-ccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRS-KGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~-rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
++...++||+|.. |.|.-++.--.. .---||+|...++|-+|+-.|||+-++
T Consensus 303 ~keEceKyg~V~~---------------------------viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFG 355 (378)
T KOG1996|consen 303 TKEECEKYGKVGN---------------------------VIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFG 355 (378)
T ss_pred HHHHHHhhcceee---------------------------EEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceec
Confidence 3566789999988 555544311111 134799999999999999999999999
Q ss_pred CeeEEEEec
Q 033751 81 GRVIFVDNV 89 (112)
Q Consensus 81 g~~i~V~~a 89 (112)
|+.+...+-
T Consensus 356 Gr~v~A~Fy 364 (378)
T KOG1996|consen 356 GRVVSACFY 364 (378)
T ss_pred ceeeeheec
Confidence 998877653
No 104
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=95.19 E-value=0.042 Score=32.20 Aligned_cols=37 Identities=24% Similarity=0.611 Sum_probs=29.2
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHH
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKAL 71 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai 71 (112)
+.+.|..||+|.+ ..+. ...-..++.|.+..+|+.|+
T Consensus 17 vl~~F~~fGeI~~---------------------------~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 17 VLEHFASFGEIVD---------------------------IYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred HHHHHHhcCCEEE---------------------------EEcC------CCCcEEEEEECCHHHHHhhC
Confidence 4678999999988 5553 22348999999999999985
No 105
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=95.05 E-value=0.035 Score=36.96 Aligned_cols=54 Identities=35% Similarity=0.557 Sum_probs=31.6
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCc----
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGK---- 77 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~---- 77 (112)
|+++|+.||.|.. +.+... .--|+|-|.+++.|+.|+..+...
T Consensus 18 iK~~f~~~g~V~y---------------------------VD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~ 64 (105)
T PF08777_consen 18 IKEAFSQFGEVAY---------------------------VDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGK 64 (105)
T ss_dssp HHHHT-SS--EEE---------------------------EE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-
T ss_pred HHHHHHhcCCcce---------------------------EEecCC------CCEEEEEECCcchHHHHHHHHHhccCCc
Confidence 7889999998877 655332 237999999999999999977544
Q ss_pred -eeCCeeEEEEe
Q 033751 78 -LLDGRVIFVDN 88 (112)
Q Consensus 78 -~l~g~~i~V~~ 88 (112)
.+.+..+.+++
T Consensus 65 ~~i~~~~~~~~v 76 (105)
T PF08777_consen 65 LKIKGKEVTLEV 76 (105)
T ss_dssp B-TTSSSEEEE-
T ss_pred eEEcCceEEEEE
Confidence 34455555544
No 106
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=94.40 E-value=0.088 Score=43.77 Aligned_cols=46 Identities=28% Similarity=0.429 Sum_probs=37.0
Q ss_pred EEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeeEEEEecc
Q 033751 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 90 (112)
Q Consensus 44 l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~ 90 (112)
++..+.+|+..|-|||+|.+++++++|++ .|-..+.++-|.|=.+.
T Consensus 39 ~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 39 LEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAG 84 (510)
T ss_pred EEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccC
Confidence 44455589999999999999999999998 66666777777775553
No 107
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.04 E-value=0.15 Score=40.40 Aligned_cols=56 Identities=29% Similarity=0.479 Sum_probs=42.8
Q ss_pred CHHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 1 MLADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
+|..+|++||.|++ ... . ..--+-+|.|.+..+|++||. .||..|+
T Consensus 212 ~vL~~F~~cG~Vvk---------------------------hv~--~----~ngNwMhirYssr~~A~KALs-kng~ii~ 257 (350)
T KOG4285|consen 212 IVLNLFSRCGEVVK---------------------------HVT--P----SNGNWMHIRYSSRTHAQKALS-KNGTIID 257 (350)
T ss_pred HHHHHHHhhCeeee---------------------------eec--C----CCCceEEEEecchhHHHHhhh-hcCeeec
Confidence 36789999999977 322 1 122378999999999999999 8999998
Q ss_pred Ce-eEEEEecc
Q 033751 81 GR-VIFVDNVR 90 (112)
Q Consensus 81 g~-~i~V~~a~ 90 (112)
|. -|.|+.|.
T Consensus 258 g~vmiGVkpCt 268 (350)
T KOG4285|consen 258 GDVMIGVKPCT 268 (350)
T ss_pred cceEEeeeecC
Confidence 75 45677654
No 108
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.00 E-value=0.033 Score=48.82 Aligned_cols=62 Identities=23% Similarity=0.258 Sum_probs=50.0
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
++.+++++|.+.. .+++..+ .|+++|.|+|.|.++.++..+...++...+.-
T Consensus 753 ~k~l~~~~gn~~~---------------------------~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE 804 (881)
T KOG0128|consen 753 LKSLASKTGNVTS---------------------------LRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRE 804 (881)
T ss_pred HHhhccccCCccc---------------------------cchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhh
Confidence 4667777888777 6666665 78999999999999999999999888877777
Q ss_pred eeEEEEeccC
Q 033751 82 RVIFVDNVRP 91 (112)
Q Consensus 82 ~~i~V~~a~~ 91 (112)
+.+.|..+.+
T Consensus 805 ~~~~v~vsnp 814 (881)
T KOG0128|consen 805 NNGEVQVSNP 814 (881)
T ss_pred cCccccccCC
Confidence 7677776554
No 109
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=93.88 E-value=0.17 Score=44.05 Aligned_cols=44 Identities=27% Similarity=0.437 Sum_probs=39.0
Q ss_pred EeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeeEEEEe
Q 033751 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 88 (112)
Q Consensus 45 ~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~ 88 (112)
++-.+.|+..|-|-|-|.+.++|++|...|++++|.++.|.+.+
T Consensus 900 ~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 900 IRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred EeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 34445799999999999999999999999999999999988764
No 110
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=93.57 E-value=0.12 Score=42.31 Aligned_cols=57 Identities=25% Similarity=0.374 Sum_probs=42.9
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCccc-EEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKG-YGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG-~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
|..+|++||.|.+ + ++- .+..| -|.|.|.+.+.|+.|-..|||..|.
T Consensus 167 LHqvFS~fG~VlK---------------------------I--iTF---~Knn~FQALvQy~d~~sAq~AK~aLdGqnIy 214 (492)
T KOG1190|consen 167 LHQVFSKFGFVLK---------------------------I--ITF---TKNNGFQALVQYTDAVSAQAAKLALDGQNIY 214 (492)
T ss_pred HHHHHhhcceeEE---------------------------E--EEE---ecccchhhhhhccchhhHHHHHHhccCCccc
Confidence 6789999999977 3 222 11223 4899999999999999999999987
Q ss_pred C--eeEEEEecc
Q 033751 81 G--RVIFVDNVR 90 (112)
Q Consensus 81 g--~~i~V~~a~ 90 (112)
+ ..+++++++
T Consensus 215 ngcCtLrId~Sk 226 (492)
T KOG1190|consen 215 NGCCTLRIDFSK 226 (492)
T ss_pred CceeEEEeehhh
Confidence 5 466666653
No 111
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=93.17 E-value=0.036 Score=45.47 Aligned_cols=60 Identities=23% Similarity=0.293 Sum_probs=41.6
Q ss_pred HHHHhhccCcceecceeeec---cCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCce
Q 033751 2 LADAFSQFGQVTEDLVYFYF---KSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKL 78 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~ 78 (112)
|.++|+.+|.|..|++|.-. .+.-.++..||.++ -+-+|+|+|...+.|.+|.+.|+.-.
T Consensus 248 l~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~-----------------tk~~AlvEye~~~~A~KA~e~~~~e~ 310 (484)
T KOG1855|consen 248 LSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQ-----------------TKECALVEYEEVEAARKARELLNPEQ 310 (484)
T ss_pred HHHHhhcccceeeeeecCCCCCCcccccCCccchhhh-----------------hhhhhhhhhhhhHHHHHHHHhhchhh
Confidence 67899999999997776552 22223334444421 13489999999999999999775433
No 112
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.63 E-value=0.47 Score=34.75 Aligned_cols=38 Identities=26% Similarity=0.305 Sum_probs=29.1
Q ss_pred cEEEEEeCCHHHHHHHHHhhC--CceeCCeeEEEEeccCC
Q 033751 55 GYGYVTFSTEEEAQKALADMN--GKLLDGRVIFVDNVRPS 92 (112)
Q Consensus 55 G~afV~f~~~~~a~~Ai~~l~--g~~l~g~~i~V~~a~~~ 92 (112)
+-..|.|.+.++|..|...|+ +..+.|..++|-++...
T Consensus 32 rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 32 RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 467899999999999999999 99999999999888543
No 113
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=92.38 E-value=0.18 Score=41.99 Aligned_cols=60 Identities=32% Similarity=0.377 Sum_probs=46.8
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|...|.+||.|.. |.+-.. .--|.|+|.+..+|-.|.. .++-.|++
T Consensus 390 ln~hfA~fG~i~n---------------------------~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnn 435 (526)
T KOG2135|consen 390 LNPHFAQFGEIEN---------------------------IQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNN 435 (526)
T ss_pred hhhhhhhcCcccc---------------------------ccccCc------hhhheeeeeccccccchhc-cccceecC
Confidence 5678999999988 544222 2368999999999977776 78999999
Q ss_pred eeEEEEeccCCCCC
Q 033751 82 RVIFVDNVRPSRRY 95 (112)
Q Consensus 82 ~~i~V~~a~~~~~~ 95 (112)
+.|+|.|-.++...
T Consensus 436 r~iKl~whnps~~t 449 (526)
T KOG2135|consen 436 RFIKLFWHNPSPVT 449 (526)
T ss_pred ceeEEEEecCCccc
Confidence 99999998875543
No 114
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.00 E-value=0.1 Score=41.45 Aligned_cols=35 Identities=29% Similarity=0.492 Sum_probs=29.9
Q ss_pred EEEEEeCCHHHHHHHHHhhCCceeCCeeEEEEecc
Q 033751 56 YGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 90 (112)
Q Consensus 56 ~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~ 90 (112)
-++|+|...++|..||...+|..++|+.++..+..
T Consensus 127 s~yITy~~~eda~rci~~v~g~~~dg~~lka~~gt 161 (327)
T KOG2068|consen 127 SVYITYEEEEDADRCIDDVDGFVDDGRALKASLGT 161 (327)
T ss_pred cccccccchHhhhhHHHHhhhHHhhhhhhHHhhCC
Confidence 38999999999999999999999999876655543
No 115
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=90.49 E-value=0.37 Score=42.80 Aligned_cols=58 Identities=31% Similarity=0.546 Sum_probs=46.9
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|.++|..||+|.. +.+ .+..-|++|.|.+...++.|.+.|-|..+++
T Consensus 472 l~r~fd~fGpir~---------------------------Idy------~hgq~yayi~yes~~~aq~a~~~~rgap~G~ 518 (975)
T KOG0112|consen 472 LNREFDRFGPIRI---------------------------IDY------RHGQPYAYIQYESPPAAQAATHDMRGAPLGG 518 (975)
T ss_pred HHHHhhccCccee---------------------------eec------ccCCcceeeecccCccchhhHHHHhcCcCCC
Confidence 6778889998877 543 2234599999999999999999999999985
Q ss_pred --eeEEEEeccCC
Q 033751 82 --RVIFVDNVRPS 92 (112)
Q Consensus 82 --~~i~V~~a~~~ 92 (112)
++++|.++.+.
T Consensus 519 P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 519 PPRRLRVDLASPP 531 (975)
T ss_pred CCcccccccccCC
Confidence 67888888543
No 116
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=90.36 E-value=0.58 Score=39.07 Aligned_cols=46 Identities=28% Similarity=0.385 Sum_probs=37.5
Q ss_pred EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeeEEEEec
Q 033751 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89 (112)
Q Consensus 42 ~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a 89 (112)
+.++.|+ .+++.|-|||.|.+.+.|++|+. -|-..++.+-|.|-.+
T Consensus 134 i~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 134 ILLPMDQ-RGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRS 179 (510)
T ss_pred eeeeccC-CCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehh
Confidence 5567776 67899999999999999999998 5566788887777555
No 117
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=89.14 E-value=1.1 Score=29.08 Aligned_cols=39 Identities=23% Similarity=0.466 Sum_probs=31.1
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMN 75 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~ 75 (112)
|.++|++||.|.- ..+.|- -|||...+.+.+..++..+.
T Consensus 25 I~qlFspfG~I~V----------------------------sWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 25 IYQLFSPFGQIYV----------------------------SWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp HHHHCCCCCCEEE----------------------------EEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred HHHHhccCCcEEE----------------------------EEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 5688999998743 444442 79999999999999998775
No 118
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=88.33 E-value=0.47 Score=42.11 Aligned_cols=64 Identities=30% Similarity=0.351 Sum_probs=51.8
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC-
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD- 80 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~- 80 (112)
|..++++||.+.. ++..+|- -.|.|.|.+.+.|-.|+.+++|+++.
T Consensus 315 L~~l~s~yg~v~s---------------------------~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~ 361 (1007)
T KOG4574|consen 315 LATLCSDYGSVAS---------------------------AWTLRDL------NMALVSFSSVESAILALDALQGKEVSV 361 (1007)
T ss_pred HHHHHHhhcchhh---------------------------heecccc------cchhhhhHHHHHHHHhhhhhcCCcccc
Confidence 5678899999988 7766664 37899999999999999999999964
Q ss_pred -CeeEEEEeccCCCCCCCC
Q 033751 81 -GRVIFVDNVRPSRRYNTD 98 (112)
Q Consensus 81 -g~~i~V~~a~~~~~~~~~ 98 (112)
|-+.+|.+|+..+-..++
T Consensus 362 ~g~Ps~V~~ak~~~~~ep~ 380 (1007)
T KOG4574|consen 362 TGAPSRVSFAKTLPMYEPP 380 (1007)
T ss_pred cCCceeEEeccccccccCC
Confidence 778899999866555443
No 119
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=87.95 E-value=1.5 Score=27.03 Aligned_cols=33 Identities=30% Similarity=0.594 Sum_probs=20.2
Q ss_pred EEEEEeCCHHHHHHHHHhhCCceeCCeeEEEEec
Q 033751 56 YGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89 (112)
Q Consensus 56 ~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a 89 (112)
|+||+-.. +.|..++..|++..+.|+++.|+.|
T Consensus 42 ~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 42 FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp -EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 88998875 4788899999999999999999875
No 120
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=87.80 E-value=1.9 Score=30.91 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=28.6
Q ss_pred ccEEEEEeCCHHHHHHHHHhhCCceeCCeeEEEEec
Q 033751 54 KGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89 (112)
Q Consensus 54 rG~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a 89 (112)
+--|.|.|.+..+|=+|+.+.+. ...|..+.+.+-
T Consensus 125 rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 125 RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 34799999999999999998864 667778888764
No 121
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=87.31 E-value=0.096 Score=46.04 Aligned_cols=47 Identities=23% Similarity=0.359 Sum_probs=35.1
Q ss_pred EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeeEEEEe
Q 033751 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 88 (112)
Q Consensus 42 ~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~ 88 (112)
+++.--..+++.+|+|++.|.+++++.+|+...++..++...+.++.
T Consensus 697 vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i~g 743 (881)
T KOG0128|consen 697 VQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAISG 743 (881)
T ss_pred HHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhheeC
Confidence 33333345788999999999999999999998877666655555544
No 122
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=85.30 E-value=1.7 Score=26.72 Aligned_cols=39 Identities=23% Similarity=0.467 Sum_probs=31.2
Q ss_pred EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeeEEE
Q 033751 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86 (112)
Q Consensus 42 ~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V 86 (112)
.+|..|+ | || ||.|++..+|+++....||..+.+.+|.+
T Consensus 27 ~~I~~d~-t----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 27 DRIRDDR-T----GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred ceEEecC-C----EE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4555564 2 44 79999999999999999999988877654
No 123
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=84.93 E-value=1.5 Score=33.61 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=23.5
Q ss_pred cEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 55 GYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 55 G~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
-.||++|.+.+.|..|+..|.|..|.
T Consensus 249 ~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 249 PVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred ceEeecHHHHHHHHHHHHHhhcceec
Confidence 48999999999999999999998764
No 124
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=84.88 E-value=5.7 Score=29.76 Aligned_cols=45 Identities=24% Similarity=0.409 Sum_probs=38.3
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
|+++.-.-|.|+. +.+.+| |++.|+|...++++-|+..|+.+.+.
T Consensus 132 LKDHmReaGdvCf---------------------------adv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 132 LKDHMREAGDVCF---------------------------ADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred HHHHHHhhCCeee---------------------------eeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 6777888888888 777777 48999999999999999999987754
No 125
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=82.07 E-value=0.48 Score=36.66 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=25.2
Q ss_pred EEEEEeCCHHHHHHHHHhhCCceeCCee
Q 033751 56 YGYVTFSTEEEAQKALADMNGKLLDGRV 83 (112)
Q Consensus 56 ~afV~f~~~~~a~~Ai~~l~g~~l~g~~ 83 (112)
-|.|+|.+...|......||+.+|+|+.
T Consensus 130 EGWvEF~~KrvAK~iAe~Lnn~~Iggkk 157 (278)
T KOG3152|consen 130 EGWVEFISKRVAKRIAELLNNTPIGGKK 157 (278)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCccCCCC
Confidence 4779999999999999999999999863
No 126
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=80.37 E-value=0.92 Score=38.95 Aligned_cols=38 Identities=26% Similarity=0.349 Sum_probs=31.5
Q ss_pred cccEEEEEeCCHHHHHHHHHhhCCcee---CCeeEEEEecc
Q 033751 53 SKGYGYVTFSTEEEAQKALADMNGKLL---DGRVIFVDNVR 90 (112)
Q Consensus 53 ~rG~afV~f~~~~~a~~Ai~~l~g~~l---~g~~i~V~~a~ 90 (112)
.+..|||.|++.++|-+.+.+|||.+- +.+.|.+.+..
T Consensus 480 IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 480 IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVR 520 (718)
T ss_pred hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecc
Confidence 567899999999999999999999773 35677777764
No 127
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=79.30 E-value=6.7 Score=23.83 Aligned_cols=28 Identities=36% Similarity=0.426 Sum_probs=22.8
Q ss_pred eEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhh
Q 033751 40 FAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADM 74 (112)
Q Consensus 40 ~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l 74 (112)
..+..+-|. -|-|.|.+++.|.+|+.+|
T Consensus 35 ~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 35 FRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 337777775 5789999999999999764
No 128
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=75.53 E-value=2.5 Score=34.72 Aligned_cols=48 Identities=21% Similarity=0.364 Sum_probs=37.1
Q ss_pred EEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeeEEEEec
Q 033751 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89 (112)
Q Consensus 41 ~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a 89 (112)
++.|+.+. -|+..|-|||.|.+.++|..|....+.+....+-|.|=.+
T Consensus 312 gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 312 GVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred eeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 37777775 6899999999999999999998877755554666665443
No 129
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=75.20 E-value=2.6 Score=34.32 Aligned_cols=45 Identities=16% Similarity=0.367 Sum_probs=37.6
Q ss_pred EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeeEEE
Q 033751 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86 (112)
Q Consensus 42 ~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V 86 (112)
++..-++.+|+++|||++...+.++.++..+.|.-+.|.|..=.|
T Consensus 112 mKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 112 MKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred hhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 455566778999999999999999999999999988888764333
No 130
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=74.82 E-value=6 Score=33.57 Aligned_cols=49 Identities=16% Similarity=0.355 Sum_probs=38.1
Q ss_pred EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCce---eC-CeeEEEEecc
Q 033751 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKL---LD-GRVIFVDNVR 90 (112)
Q Consensus 42 ~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~---l~-g~~i~V~~a~ 90 (112)
+-++.|-.+...-|||||.|-+++++....++.||.. ++ .+...+.+|+
T Consensus 419 lYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYAr 471 (549)
T KOG4660|consen 419 LYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYAR 471 (549)
T ss_pred EEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhh
Confidence 5677787666677999999999999999999999987 34 3344555554
No 131
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=69.83 E-value=7.3 Score=30.28 Aligned_cols=60 Identities=27% Similarity=0.428 Sum_probs=45.4
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCC----c
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNG----K 77 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g----~ 77 (112)
+...|+.||+|.+ ..++-|- .++..+-++|.|.+.-.+.+|.....- .
T Consensus 48 l~~~f~~fg~~e~---------------------------av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~ 99 (275)
T KOG0115|consen 48 LEQAFRRFGPIER---------------------------AVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGG 99 (275)
T ss_pred HHHhhhhcCccch---------------------------heeeecc-cccccccchhhhhcchhHHHHHHHhccCcccc
Confidence 5678999999988 6666663 688889999999999999999987742 2
Q ss_pred eeCCeeEEEEec
Q 033751 78 LLDGRVIFVDNV 89 (112)
Q Consensus 78 ~l~g~~i~V~~a 89 (112)
...+++..|...
T Consensus 100 ~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 100 TTGGRPVGVEPM 111 (275)
T ss_pred CCCCCccCCChh
Confidence 234566666554
No 132
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=68.30 E-value=6 Score=32.62 Aligned_cols=62 Identities=16% Similarity=0.275 Sum_probs=40.2
Q ss_pred CHHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 1 MLADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
+++.||.-.|.|.++.+|-+..+.++ ....-.|||.|.++..+..|-+ |..+.+-
T Consensus 23 qm~tlFg~lGkI~elrlyp~~~d~~~------------------------pv~sRtcyVkf~d~~sv~vaQh-Ltntvfv 77 (479)
T KOG4676|consen 23 QMQTLFGNLGKIPELRLYPNVDDSKI------------------------PVISRTCYVKFLDSQSVTVAQH-LTNTVFV 77 (479)
T ss_pred HHHHHHhhccccccccccCCCCCccC------------------------cceeeeEEEeccCCcceeHHhh-hccceee
Confidence 36788999999988444433222211 1233479999999999999987 5556655
Q ss_pred CeeEEEE
Q 033751 81 GRVIFVD 87 (112)
Q Consensus 81 g~~i~V~ 87 (112)
++-|.|.
T Consensus 78 draliv~ 84 (479)
T KOG4676|consen 78 DRALIVR 84 (479)
T ss_pred eeeEEEE
Confidence 5555443
No 133
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=66.94 E-value=7.7 Score=29.79 Aligned_cols=33 Identities=27% Similarity=0.252 Sum_probs=24.2
Q ss_pred EEEEeCCHHHHHHHHHhhCCceeCCeeEEEEeccC
Q 033751 57 GYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91 (112)
Q Consensus 57 afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~ 91 (112)
|||+|++..+|+.|++.+.... .+.+.+..|-+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCC
Confidence 7999999999999999664433 34556666643
No 134
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=65.50 E-value=2.1 Score=35.59 Aligned_cols=46 Identities=26% Similarity=0.516 Sum_probs=38.4
Q ss_pred cccEEEEEeCCHHHHHHHHHhhCCce-eCCeeEEEEeccCCCCCCCC
Q 033751 53 SKGYGYVTFSTEEEAQKALADMNGKL-LDGRVIFVDNVRPSRRYNTD 98 (112)
Q Consensus 53 ~rG~afV~f~~~~~a~~Ai~~l~g~~-l~g~~i~V~~a~~~~~~~~~ 98 (112)
..||+||.+.+...|-+|+..++|.. +.|+++.+..+-+...+.+.
T Consensus 36 k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqrsrk 82 (584)
T KOG2193|consen 36 KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQRSRK 82 (584)
T ss_pred ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHHhhh
Confidence 35899999999999999999999876 78999999888666554443
No 135
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=64.64 E-value=27 Score=23.42 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=30.6
Q ss_pred EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 42 ~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
.+|++|. ...+=.+.+.|.+.++|..=...+||+.++
T Consensus 44 ~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 44 IRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred EEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 6777774 234557889999999999999999999976
No 136
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=64.52 E-value=7.6 Score=30.19 Aligned_cols=50 Identities=26% Similarity=0.114 Sum_probs=36.2
Q ss_pred EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeeEEEEeccC
Q 033751 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91 (112)
Q Consensus 42 ~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~ 91 (112)
+.+........++|++.++|...+.+..|+...-...+.++.+...+...
T Consensus 118 ~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~ 167 (285)
T KOG4210|consen 118 ARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTR 167 (285)
T ss_pred chhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccccc
Confidence 44444445678899999999999999999985433466666666665543
No 137
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=62.48 E-value=21 Score=26.46 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=34.8
Q ss_pred ccEEEEEeCCHHHHHHHHHhhCCceeCCe-eEEEEeccCCCCCC
Q 033751 54 KGYGYVTFSTEEEAQKALADMNGKLLDGR-VIFVDNVRPSRRYN 96 (112)
Q Consensus 54 rG~afV~f~~~~~a~~Ai~~l~g~~l~g~-~i~V~~a~~~~~~~ 96 (112)
.+.--|.|++++.|.+|...+++..+.|+ .+..-++.+.....
T Consensus 51 frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~~~~~ 94 (193)
T KOG4019|consen 51 FRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPGHPES 94 (193)
T ss_pred hceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCCCccc
Confidence 34566899999999999999999999887 78887777654443
No 138
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=58.55 E-value=19 Score=29.81 Aligned_cols=32 Identities=34% Similarity=0.506 Sum_probs=25.3
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHhhCCceeCCe
Q 033751 50 KNRSKGYGYVTFSTEEEAQKALADMNGKLLDGR 82 (112)
Q Consensus 50 t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g~ 82 (112)
.|+..|-|||.|..+++|+.|+.. |...++.|
T Consensus 202 dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqR 233 (508)
T KOG1365|consen 202 DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQR 233 (508)
T ss_pred CCCcccceEEEecCHHHHHHHHHH-HHHHHhHH
Confidence 688999999999999999999983 33334433
No 139
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=54.01 E-value=20 Score=31.83 Aligned_cols=35 Identities=23% Similarity=0.406 Sum_probs=30.0
Q ss_pred ccEEEEEeCCHHHHHHHHHhhCCceeCCeeEEEEec
Q 033751 54 KGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89 (112)
Q Consensus 54 rG~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a 89 (112)
-|-|||.|++-|||+.|.. -++..|+|-++++-++
T Consensus 40 ~GeaFI~FsTDeDARlaM~-kdr~~i~g~~VrLlLS 74 (944)
T KOG4307|consen 40 EGEAFIGFSTDEDARLAMT-KDRLMIHGAEVRLLLS 74 (944)
T ss_pred ccceEEEecccchhhhhhh-hcccceecceEEEEec
Confidence 4789999999999999987 5678889888887665
No 140
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=51.60 E-value=27 Score=29.57 Aligned_cols=32 Identities=34% Similarity=0.370 Sum_probs=29.0
Q ss_pred EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHh
Q 033751 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALAD 73 (112)
Q Consensus 42 ~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~ 73 (112)
+-|-+|++-.-++|-|-|+|++..+.-+||.+
T Consensus 401 aGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 401 VGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred EEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 88888877888999999999999999999984
No 141
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=37.62 E-value=49 Score=19.97 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=21.3
Q ss_pred EEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 56 YGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 56 ~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
+.+++|.+..+|.+|-+.|....+..
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPV 28 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcE
Confidence 67899999999999998887655543
No 142
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=31.16 E-value=81 Score=19.69 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=21.3
Q ss_pred CcccEEEEEeCCHHHHHHHHHhhCC
Q 033751 52 RSKGYGYVTFSTEEEAQKALADMNG 76 (112)
Q Consensus 52 ~~rG~afV~f~~~~~a~~Ai~~l~g 76 (112)
..+||-||+=.+++++..|+..+.+
T Consensus 42 ~lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 42 SLKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp TSTSEEEEEESSHHHHHHHHTT-TT
T ss_pred CCceEEEEEeCCHHHHHHHHhcccc
Confidence 3889999999999999999987754
No 143
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=29.02 E-value=20 Score=30.87 Aligned_cols=30 Identities=30% Similarity=0.592 Sum_probs=22.7
Q ss_pred EEEeCCHHHHHHHHHhhCC--ceeCCeeEEEE
Q 033751 58 YVTFSTEEEAQKALADMNG--KLLDGRVIFVD 87 (112)
Q Consensus 58 fV~f~~~~~a~~Ai~~l~g--~~l~g~~i~V~ 87 (112)
||+|.+..||+.|.+.|.. +.+-|+.|..+
T Consensus 216 yITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 216 YITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred EEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 8999999999999998753 22556665444
No 144
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.47 E-value=91 Score=27.10 Aligned_cols=34 Identities=15% Similarity=0.251 Sum_probs=29.2
Q ss_pred EEEEEeCCHHHHHHHHHhhCCceeC--CeeEEEEec
Q 033751 56 YGYVTFSTEEEAQKALADMNGKLLD--GRVIFVDNV 89 (112)
Q Consensus 56 ~afV~f~~~~~a~~Ai~~l~g~~l~--g~~i~V~~a 89 (112)
||.|+|.+++.|.+.+...+|.++. +..+-+++.
T Consensus 270 yAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 270 YAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred EEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 8999999999999999999999986 456666654
No 145
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=26.34 E-value=1.6e+02 Score=19.03 Aligned_cols=32 Identities=25% Similarity=0.278 Sum_probs=22.4
Q ss_pred EEEEeCCHHHHHHHHHhhCCce--eCCeeEEEEec
Q 033751 57 GYVTFSTEEEAQKALADMNGKL--LDGRVIFVDNV 89 (112)
Q Consensus 57 afV~f~~~~~a~~Ai~~l~g~~--l~g~~i~V~~a 89 (112)
|.|+|.++.-|++-+. +.-+. +++..+.|...
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~ 34 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKVS 34 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEEE
Confidence 6899999999999887 43344 45665555544
No 146
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=24.54 E-value=96 Score=19.25 Aligned_cols=46 Identities=13% Similarity=0.196 Sum_probs=26.3
Q ss_pred EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeeEEEEecc
Q 033751 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 90 (112)
Q Consensus 42 ~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~ 90 (112)
+..+..+.++.+--.-+|+.....+... .++=+.+.|.++.|+...
T Consensus 18 i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 18 IHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred EEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 4555555445555566777655444333 244456778887776543
No 147
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=23.50 E-value=1.5e+02 Score=17.97 Aligned_cols=13 Identities=31% Similarity=0.636 Sum_probs=11.2
Q ss_pred HHHHhhccCccee
Q 033751 2 LADAFSQFGQVTE 14 (112)
Q Consensus 2 l~~~f~~~G~i~~ 14 (112)
|++.|+..|+|.-
T Consensus 11 iR~~fs~lG~I~v 23 (62)
T PF15513_consen 11 IRQFFSQLGEIAV 23 (62)
T ss_pred HHHHHHhcCcEEE
Confidence 7889999999965
No 148
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=22.13 E-value=1.6e+02 Score=24.86 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=30.9
Q ss_pred EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 42 ~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
+++++|...++ =...|.|.+.++|..=...+||+.+..
T Consensus 105 irivRd~~pnr--ymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 105 IRIVRDGMPNR--YMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred eEEeecCCCce--EEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78888754333 357899999999999999999999763
No 149
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=21.24 E-value=83 Score=26.88 Aligned_cols=38 Identities=34% Similarity=0.464 Sum_probs=31.9
Q ss_pred cccEEEEEeCCHHHHHHHHHhhCCceeCCeeEEEEecc
Q 033751 53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 90 (112)
Q Consensus 53 ~rG~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~ 90 (112)
...+++++|.++..+.+|+..++|....+..+++....
T Consensus 62 ~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~ 99 (534)
T KOG2187|consen 62 MPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGA 99 (534)
T ss_pred CCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcc
Confidence 34799999999999999999999988777766666554
Done!