Query 033751
Match_columns 112
No_of_seqs 114 out of 1397
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 09:30:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033751.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033751hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.7 2.5E-17 8.7E-22 107.1 8.8 64 2-92 36-99 (99)
2 3s8s_A Histone-lysine N-methyl 99.7 1.9E-16 6.5E-21 104.9 9.0 65 2-93 23-87 (110)
3 2dnz_A Probable RNA-binding pr 99.7 2.9E-16 1E-20 99.8 9.4 71 2-99 22-92 (95)
4 2cpz_A CUG triplet repeat RNA- 99.7 7.1E-16 2.4E-20 101.5 9.8 70 2-98 42-111 (115)
5 1x5t_A Splicing factor 3B subu 99.7 5E-16 1.7E-20 98.9 8.7 69 2-97 22-91 (96)
6 2dgo_A Cytotoxic granule-assoc 99.7 1.8E-15 6.3E-20 99.4 11.5 68 2-96 32-99 (115)
7 2cqb_A Peptidyl-prolyl CIS-tra 99.7 4.8E-16 1.7E-20 100.1 8.4 70 2-98 29-98 (102)
8 3md1_A Nuclear and cytoplasmic 99.6 1E-15 3.5E-20 94.9 9.3 65 2-93 18-82 (83)
9 2cq0_A Eukaryotic translation 99.6 9E-16 3.1E-20 99.1 9.1 69 2-97 32-100 (103)
10 2dgs_A DAZ-associated protein 99.6 9.1E-16 3.1E-20 98.4 8.9 69 2-98 27-95 (99)
11 1whw_A Hypothetical protein ri 99.6 9.9E-16 3.4E-20 98.1 9.0 68 2-96 25-92 (99)
12 3p5t_L Cleavage and polyadenyl 99.6 1.6E-16 5.6E-21 100.8 5.1 66 2-94 18-85 (90)
13 3bs9_A Nucleolysin TIA-1 isofo 99.6 1.1E-15 3.9E-20 95.5 8.9 64 2-92 23-86 (87)
14 2lxi_A RNA-binding protein 10; 99.6 2E-16 6.8E-21 101.2 5.4 67 2-95 18-86 (91)
15 1x5s_A Cold-inducible RNA-bind 99.6 6.7E-16 2.3E-20 99.4 7.8 69 2-97 29-97 (102)
16 3ns6_A Eukaryotic translation 99.6 2.5E-16 8.7E-21 102.0 5.9 64 2-92 29-93 (100)
17 2cpf_A RNA binding motif prote 99.6 1.3E-15 4.4E-20 97.4 8.7 69 2-97 22-93 (98)
18 2cpe_A RNA-binding protein EWS 99.6 1.3E-15 4.4E-20 99.8 8.8 69 2-97 32-108 (113)
19 2dnm_A SRP46 splicing factor; 99.6 6.4E-16 2.2E-20 99.8 6.9 69 2-97 30-98 (103)
20 2lkz_A RNA-binding protein 5; 99.6 4E-16 1.4E-20 101.3 5.8 63 2-91 26-94 (95)
21 2dgp_A Bruno-like 4, RNA bindi 99.6 1.1E-15 3.7E-20 99.0 7.8 70 2-98 30-102 (106)
22 1x5u_A Splicing factor 3B subu 99.6 1.3E-15 4.4E-20 98.5 8.1 69 2-97 32-100 (105)
23 2cph_A RNA binding motif prote 99.6 2.1E-15 7.2E-20 97.7 8.4 69 2-97 32-102 (107)
24 1u6f_A Tcubp1, RNA-binding pro 99.6 3.6E-15 1.2E-19 100.9 9.8 69 2-97 59-127 (139)
25 1p27_B RNA-binding protein 8A; 99.6 2E-15 6.8E-20 97.8 8.2 65 2-93 40-104 (106)
26 1x4h_A RNA-binding protein 28; 99.6 2.8E-15 9.7E-20 97.6 8.9 69 2-97 32-106 (111)
27 2do4_A Squamous cell carcinoma 99.6 3.3E-15 1.1E-19 96.0 9.1 66 2-95 34-99 (100)
28 2do0_A HnRNP M, heterogeneous 99.6 8.9E-15 3.1E-19 95.8 11.3 68 2-97 32-99 (114)
29 2dng_A Eukaryotic translation 99.6 3.9E-15 1.3E-19 96.2 9.4 67 2-97 32-98 (103)
30 2x1f_A MRNA 3'-END-processing 99.6 2.6E-15 8.9E-20 95.9 8.3 66 2-94 19-84 (96)
31 3mdf_A Peptidyl-prolyl CIS-tra 99.6 2.1E-15 7.1E-20 93.9 7.7 62 2-90 24-85 (85)
32 2fy1_A RNA-binding motif prote 99.6 3.8E-15 1.3E-19 99.0 9.3 66 2-95 24-89 (116)
33 1wi8_A EIF-4B, eukaryotic tran 99.6 3.5E-15 1.2E-19 96.6 8.4 68 2-98 32-100 (104)
34 2cqc_A Arginine/serine-rich sp 99.6 4.3E-15 1.5E-19 94.2 8.7 63 2-91 32-94 (95)
35 1oo0_B CG8781-PA, drosophila Y 99.6 3.1E-15 1.1E-19 97.6 8.2 66 2-94 43-108 (110)
36 2d9p_A Polyadenylate-binding p 99.6 4.3E-15 1.5E-19 95.9 8.7 68 2-98 32-99 (103)
37 3ucg_A Polyadenylate-binding p 99.6 5.4E-15 1.8E-19 92.7 8.6 64 2-93 23-86 (89)
38 4f25_A Polyadenylate-binding p 99.6 5.3E-15 1.8E-19 97.9 8.8 65 2-95 22-86 (115)
39 2div_A TRNA selenocysteine ass 99.6 4E-15 1.4E-19 95.3 7.8 66 2-94 26-96 (99)
40 2dgx_A KIAA0430 protein; RRM d 99.6 5.4E-15 1.8E-19 94.8 8.4 64 2-95 30-93 (96)
41 2e5h_A Zinc finger CCHC-type a 99.6 4.8E-15 1.6E-19 93.9 8.0 62 2-90 33-94 (94)
42 1x4b_A Heterogeneous nuclear r 99.6 6.6E-15 2.2E-19 97.0 8.8 69 2-98 44-112 (116)
43 1p1t_A Cleavage stimulation fa 99.6 6.2E-16 2.1E-20 99.7 3.6 67 2-95 25-91 (104)
44 2dnh_A Bruno-like 5, RNA bindi 99.6 7.8E-15 2.7E-19 94.8 8.9 68 2-97 32-102 (105)
45 4a8x_A RNA-binding protein wit 99.6 3.9E-15 1.3E-19 93.0 7.1 66 2-94 21-87 (88)
46 1h2v_Z 20 kDa nuclear CAP bind 99.6 1E-14 3.5E-19 100.7 9.8 66 2-94 56-121 (156)
47 2dh8_A DAZ-associated protein 99.6 4.4E-15 1.5E-19 96.1 7.4 68 2-97 33-100 (105)
48 2kn4_A Immunoglobulin G-bindin 99.6 5.1E-15 1.8E-19 101.9 8.0 67 2-95 87-153 (158)
49 3ex7_B RNA-binding protein 8A; 99.6 4.1E-15 1.4E-19 99.1 6.9 67 2-95 39-105 (126)
50 2jrs_A RNA-binding protein 39; 99.6 6E-15 2.1E-19 96.9 7.6 65 2-93 43-107 (108)
51 2cpi_A CCR4-NOT transcription 99.6 1.3E-14 4.4E-19 95.4 9.2 65 4-95 37-104 (111)
52 2cqi_A Nucleolysin TIAR; RNA r 99.6 2E-14 6.7E-19 92.7 9.9 67 2-97 32-98 (103)
53 2pe8_A Splicing factor 45; RRM 99.6 1.3E-14 4.6E-19 95.6 9.2 63 2-91 30-93 (105)
54 2dhg_A TRNA selenocysteine ass 99.6 6.5E-15 2.2E-19 95.0 7.5 68 2-97 26-95 (104)
55 2kxn_B Transformer-2 protein h 99.6 6E-15 2.1E-19 100.0 7.6 66 2-94 63-128 (129)
56 2cq3_A RNA-binding protein 9; 99.6 2.7E-14 9.1E-19 92.1 10.3 67 2-97 32-98 (103)
57 2jwn_A Embryonic polyadenylate 99.6 1.8E-14 6.1E-19 95.8 9.7 65 2-94 53-117 (124)
58 2m2b_A RNA-binding protein 10; 99.6 2.7E-15 9.2E-20 101.3 5.6 68 2-97 40-113 (131)
59 2cqp_A RNA-binding protein 12; 99.6 7.5E-15 2.5E-19 93.8 7.2 64 2-92 32-95 (98)
60 2cqd_A RNA-binding region cont 99.6 2.6E-14 9E-19 94.1 9.8 64 2-93 34-97 (116)
61 3ulh_A THO complex subunit 4; 99.6 1.7E-14 5.8E-19 93.5 8.6 61 2-90 46-106 (107)
62 3n9u_C Cleavage and polyadenyl 99.6 9.9E-15 3.4E-19 102.1 8.0 63 2-91 72-136 (156)
63 2cqg_A TDP-43, TAR DNA-binding 99.6 4.1E-14 1.4E-18 91.2 9.9 67 2-97 32-98 (103)
64 2ywk_A Putative RNA-binding pr 99.6 1.9E-14 6.4E-19 91.3 8.2 62 2-91 33-94 (95)
65 2ek1_A RNA-binding protein 12; 99.5 1E-14 3.6E-19 92.5 6.7 63 2-91 32-94 (95)
66 2cq4_A RNA binding motif prote 99.5 2.5E-15 8.4E-20 98.8 3.7 65 2-94 42-106 (114)
67 2kt5_A RNA and export factor-b 99.5 3.5E-14 1.2E-18 94.6 9.4 66 2-95 52-117 (124)
68 1rk8_A CG8781-PA, CG8781-PA pr 99.5 2.1E-14 7.3E-19 100.3 8.6 68 2-96 89-156 (165)
69 2ki2_A SS-DNA binding protein 99.5 3.1E-15 1.1E-19 94.3 3.8 66 2-95 18-83 (90)
70 2dis_A Unnamed protein product 99.5 2.4E-14 8.2E-19 93.0 8.1 67 2-95 25-95 (109)
71 2khc_A Testis-specific RNP-typ 99.5 8.9E-15 3E-19 96.5 6.1 62 2-90 57-118 (118)
72 2mss_A Protein (musashi1); RNA 99.5 6E-15 2.1E-19 90.0 4.6 60 2-89 16-75 (75)
73 2dgv_A HnRNP M, heterogeneous 99.5 2.7E-14 9.2E-19 90.1 7.7 65 2-95 25-89 (92)
74 1x4a_A Splicing factor, argini 99.5 7E-14 2.4E-18 91.1 9.5 67 2-98 39-105 (109)
75 1jmt_A Splicing factor U2AF 35 99.5 2.2E-14 7.6E-19 94.2 7.2 60 2-89 43-103 (104)
76 2rs2_A Musashi-1, RNA-binding 99.5 4.9E-14 1.7E-18 92.5 8.4 65 2-94 42-106 (109)
77 3s7r_A Heterogeneous nuclear r 99.5 4.7E-14 1.6E-18 88.2 8.0 60 2-89 28-87 (87)
78 2nlw_A Eukaryotic translation 99.5 1.8E-14 6.1E-19 93.9 6.0 65 2-95 38-103 (105)
79 2j76_E EIF-4B, EIF4B, eukaryot 99.5 1.3E-14 4.6E-19 93.6 5.3 63 2-93 36-99 (100)
80 2fc8_A NCL protein; structure 99.5 8.6E-14 2.9E-18 89.4 8.9 57 42-98 42-98 (102)
81 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 3.2E-14 1.1E-18 95.7 7.1 61 2-89 80-140 (140)
82 2dgw_A Probable RNA-binding pr 99.5 8.8E-14 3E-18 87.8 8.7 63 2-94 27-89 (91)
83 3v4m_A Splicing factor U2AF 65 99.5 5.3E-14 1.8E-18 92.6 7.6 63 2-91 32-96 (105)
84 2lea_A Serine/arginine-rich sp 99.5 2.3E-14 7.8E-19 97.7 6.0 67 2-95 64-130 (135)
85 1uaw_A Mouse-musashi-1; RNP-ty 99.5 2.3E-14 7.9E-19 87.5 5.3 60 2-89 17-76 (77)
86 2la6_A RNA-binding protein FUS 99.5 7.8E-14 2.7E-18 89.4 8.0 70 2-90 30-99 (99)
87 2cpx_A Hypothetical protein FL 99.5 1.9E-14 6.5E-19 94.3 5.1 70 2-98 42-111 (115)
88 1x4e_A RNA binding motif, sing 99.5 6.4E-15 2.2E-19 91.9 2.6 62 2-90 22-83 (85)
89 2wbr_A GW182, gawky, LD47780P; 99.5 6.5E-14 2.2E-18 90.6 7.3 56 2-90 24-79 (89)
90 1s79_A Lupus LA protein; RRM, 99.5 3.3E-14 1.1E-18 93.1 6.0 61 2-91 28-88 (103)
91 1x5p_A Negative elongation fac 99.5 2.3E-13 8E-18 87.0 9.6 63 2-97 30-92 (97)
92 3md3_A Nuclear and cytoplasmic 99.5 1.3E-13 4.6E-18 93.5 8.9 63 2-91 104-166 (166)
93 1wez_A HnRNP H', FTP-3, hetero 99.5 5.9E-14 2E-18 91.5 6.6 65 2-96 32-96 (102)
94 2qfj_A FBP-interacting repress 99.5 1.6E-13 5.4E-18 97.3 9.1 66 2-94 142-207 (216)
95 2hvz_A Splicing factor, argini 99.5 1.1E-13 3.7E-18 88.9 7.3 62 2-95 17-78 (101)
96 2dnq_A RNA-binding protein 4B; 99.5 2.1E-13 7.3E-18 86.0 8.5 61 2-97 25-85 (90)
97 2dit_A HIV TAT specific factor 99.5 2.9E-13 9.8E-18 89.1 9.4 64 2-96 43-106 (112)
98 1x4g_A Nucleolysin TIAR; struc 99.5 2.1E-13 7.2E-18 88.9 8.5 62 2-96 42-103 (109)
99 2a3j_A U1 small nuclear ribonu 99.5 7.3E-14 2.5E-18 95.0 6.5 62 2-93 50-111 (127)
100 1x5o_A RNA binding motif, sing 99.5 1.5E-13 5E-18 90.0 7.6 63 2-92 42-112 (114)
101 3q2s_C Cleavage and polyadenyl 99.5 4.4E-14 1.5E-18 104.1 5.7 62 2-90 85-148 (229)
102 2j8a_A Histone-lysine N-methyl 99.5 8.5E-14 2.9E-18 96.1 6.7 63 2-91 23-95 (136)
103 2fc9_A NCL protein; structure 99.5 2.4E-13 8.1E-18 87.3 8.3 55 42-97 42-96 (101)
104 2err_A Ataxin-2-binding protei 99.5 1.5E-13 5E-18 90.2 7.3 62 2-92 46-107 (109)
105 1x4c_A Splicing factor, argini 99.5 4E-13 1.4E-17 87.7 9.3 60 2-95 32-96 (108)
106 2krb_A Eukaryotic translation 99.5 2.7E-14 9.2E-19 88.7 3.5 56 2-86 24-80 (81)
107 3ue2_A Poly(U)-binding-splicin 99.5 1.7E-13 5.8E-18 92.2 7.5 63 2-91 42-108 (118)
108 2yh0_A Splicing factor U2AF 65 99.5 2.2E-13 7.5E-18 95.4 8.1 66 2-94 131-196 (198)
109 1l3k_A Heterogeneous nuclear r 99.4 2.8E-13 9.7E-18 94.7 8.3 68 2-97 121-188 (196)
110 1iqt_A AUF1, heterogeneous nuc 99.4 3.8E-14 1.3E-18 86.3 3.1 60 2-89 16-75 (75)
111 2g4b_A Splicing factor U2AF 65 99.4 2.7E-13 9.2E-18 93.0 7.5 61 2-89 111-171 (172)
112 2lcw_A RNA-binding protein FUS 99.2 8.7E-15 3E-19 96.5 0.0 81 1-100 23-103 (116)
113 1fxl_A Paraneoplastic encephal 99.4 6.4E-13 2.2E-17 90.2 9.1 66 2-94 19-84 (167)
114 2cpy_A RNA-binding protein 12; 99.4 1.5E-13 5.2E-18 90.6 5.5 63 2-93 32-95 (114)
115 2dgt_A RNA-binding protein 30; 99.4 9.1E-13 3.1E-17 83.3 8.9 62 2-98 27-88 (92)
116 1why_A Hypothetical protein ri 99.4 3.7E-13 1.3E-17 85.9 7.1 60 2-94 34-95 (97)
117 2cjk_A Nuclear polyadenylated 99.4 1.8E-13 6.1E-18 93.5 6.0 63 2-92 104-166 (167)
118 2cpj_A Non-POU domain-containi 99.4 4.4E-13 1.5E-17 85.9 7.4 62 2-96 32-93 (99)
119 2dgu_A Heterogeneous nuclear r 99.4 1.3E-12 4.3E-17 84.4 9.6 60 2-96 28-87 (103)
120 1wf1_A RNA-binding protein RAL 99.4 5.5E-13 1.9E-17 87.0 7.8 59 2-95 45-103 (110)
121 1b7f_A Protein (SXL-lethal pro 99.4 6.4E-13 2.2E-17 90.7 8.4 66 2-94 20-85 (168)
122 2db1_A Heterogeneous nuclear r 99.4 4.2E-13 1.4E-17 89.3 7.3 62 2-92 34-98 (118)
123 2cq1_A PTB-like protein L; RRM 99.4 1.1E-12 3.9E-17 85.8 9.0 62 2-96 32-95 (101)
124 1x4d_A Matrin 3; structural ge 99.4 3.2E-13 1.1E-17 88.8 6.3 61 2-95 33-95 (102)
125 3pgw_S U1-70K; protein-RNA com 99.4 6.4E-13 2.2E-17 106.2 9.1 66 1-93 118-183 (437)
126 1fj7_A Nucleolin RBD1, protein 99.4 6.1E-14 2.1E-18 90.1 2.4 64 2-94 34-97 (101)
127 1wel_A RNA-binding protein 12; 99.4 1.2E-13 4E-18 92.3 3.7 63 2-92 42-104 (124)
128 1sjq_A Polypyrimidine tract-bi 99.4 5.4E-13 1.9E-17 88.4 6.8 61 2-95 33-95 (105)
129 1fjc_A Nucleolin RBD2, protein 99.4 4.1E-13 1.4E-17 85.3 6.0 61 2-94 33-93 (96)
130 1nu4_A U1A RNA binding domain; 99.4 2.4E-13 8.3E-18 86.4 4.8 62 2-93 29-90 (97)
131 3egn_A RNA-binding protein 40; 99.4 2.2E-13 7.7E-18 92.6 4.7 72 2-95 62-133 (143)
132 2cqh_A IGF-II mRNA-binding pro 99.4 8.5E-13 2.9E-17 83.5 7.1 62 2-97 25-88 (93)
133 2hgl_A HNRPF protein, heteroge 99.4 4.3E-13 1.5E-17 92.2 6.1 61 2-91 61-124 (136)
134 4f02_A Polyadenylate-binding p 99.4 8.6E-13 2.9E-17 94.9 7.9 62 2-92 120-181 (213)
135 2cpd_A Apobec-1 stimulating pr 99.4 2.3E-12 7.7E-17 82.5 9.0 61 2-97 32-94 (99)
136 4f02_A Polyadenylate-binding p 99.4 1.8E-12 6E-17 93.3 9.3 64 2-92 32-95 (213)
137 2jvr_A Nucleolar protein 3; RN 99.4 6.2E-13 2.1E-17 88.5 6.2 60 2-92 45-105 (111)
138 1b7f_A Protein (SXL-lethal pro 99.4 1.2E-12 3.9E-17 89.4 7.7 61 2-89 106-168 (168)
139 2jvo_A Nucleolar protein 3; nu 99.4 1.4E-12 4.9E-17 85.5 7.7 59 2-95 48-106 (108)
140 3md3_A Nuclear and cytoplasmic 99.4 3.6E-12 1.2E-16 86.4 9.9 65 2-94 17-81 (166)
141 2dnp_A RNA-binding protein 14; 99.4 2.1E-12 7.1E-17 81.4 8.1 60 2-96 26-85 (90)
142 2i2y_A Fusion protein consists 99.4 8E-13 2.7E-17 90.5 6.6 60 2-93 90-149 (150)
143 2xs2_A Deleted in azoospermia- 99.4 4.7E-13 1.6E-17 86.0 5.2 63 2-94 26-88 (102)
144 1wg5_A Heterogeneous nuclear r 99.4 1.2E-12 4.1E-17 85.0 7.0 64 2-93 32-95 (104)
145 2f3j_A RNA and export factor b 99.4 8E-13 2.7E-17 93.9 6.7 63 2-92 105-167 (177)
146 2dnn_A RNA-binding protein 12; 99.4 1.6E-12 5.4E-17 86.1 7.6 60 2-91 33-92 (109)
147 2la4_A Nuclear and cytoplasmic 99.4 9.3E-13 3.2E-17 84.5 6.3 57 2-91 44-100 (101)
148 2xnq_A Nuclear polyadenylated 99.4 2.7E-12 9.3E-17 82.5 8.5 57 2-93 40-96 (97)
149 1fxl_A Paraneoplastic encephal 99.4 1.7E-12 5.7E-17 88.1 7.8 61 2-89 105-167 (167)
150 1wex_A Hypothetical protein (r 99.4 1.5E-12 5.1E-17 85.5 7.3 61 2-95 32-94 (104)
151 1whx_A Hypothetical protein ri 99.4 4.8E-13 1.6E-17 88.1 4.8 59 2-93 27-85 (111)
152 3lqv_A PRE-mRNA branch site pr 99.4 1.2E-12 4E-17 85.8 6.7 63 2-94 25-87 (115)
153 2kvi_A Nuclear polyadenylated 99.4 1.2E-12 4E-17 83.7 6.4 59 2-95 28-86 (96)
154 2d9o_A DNAJ (HSP40) homolog, s 99.4 3.1E-12 1E-16 83.8 8.4 60 2-95 34-93 (100)
155 3r27_A HnRNP L, heterogeneous 99.4 2E-12 6.8E-17 85.0 7.5 58 2-92 38-97 (100)
156 2e5g_A U6 snRNA-specific termi 99.4 2.6E-12 8.8E-17 81.7 7.7 61 2-95 25-85 (94)
157 2bz2_A Negative elongation fac 99.4 2.1E-12 7.2E-17 86.6 7.5 60 2-94 54-113 (121)
158 2ad9_A Polypyrimidine tract-bi 99.4 2.7E-12 9.2E-17 86.7 7.8 62 2-96 48-111 (119)
159 2lmi_A GRSF-1, G-rich sequence 99.4 3.7E-13 1.3E-17 87.8 3.5 62 2-92 28-92 (107)
160 2e5j_A Methenyltetrahydrofolat 99.3 2E-12 6.7E-17 82.7 6.7 61 2-94 36-96 (97)
161 2ytc_A PRE-mRNA-splicing facto 99.3 3.1E-12 1.1E-16 79.4 7.0 56 2-90 29-85 (85)
162 3zzy_A Polypyrimidine tract-bi 99.3 5.7E-12 2E-16 86.4 9.0 60 2-93 45-107 (130)
163 3s6e_A RNA-binding protein 39; 99.3 2.2E-12 7.5E-17 86.3 6.6 58 2-90 34-91 (114)
164 1l3k_A Heterogeneous nuclear r 99.3 5E-12 1.7E-16 88.3 8.8 65 2-94 30-94 (196)
165 3beg_B Splicing factor, argini 99.3 3.9E-12 1.3E-16 84.1 7.5 58 2-93 33-95 (115)
166 2hgn_A Heterogeneous nuclear r 99.3 4E-13 1.4E-17 92.7 2.5 64 2-95 63-126 (139)
167 1x4f_A Matrin 3; structural ge 99.3 2.8E-12 9.5E-17 85.8 6.2 61 2-95 43-105 (112)
168 2qfj_A FBP-interacting repress 99.3 3.6E-12 1.2E-16 90.3 7.1 64 2-92 45-108 (216)
169 2ghp_A U4/U6 snRNA-associated 99.3 3.9E-12 1.3E-16 94.6 7.5 63 2-92 228-291 (292)
170 3nmr_A Cugbp ELAV-like family 99.3 5.5E-12 1.9E-16 86.3 7.7 61 2-90 112-175 (175)
171 1sjr_A Polypyrimidine tract-bi 99.3 5E-12 1.7E-16 89.8 7.6 61 2-93 63-125 (164)
172 3smz_A Protein raver-1, ribonu 99.3 7.5E-12 2.6E-16 92.7 8.7 65 2-94 202-266 (284)
173 2cq2_A Hypothetical protein LO 99.3 4.3E-12 1.5E-16 85.2 6.6 58 2-92 44-106 (114)
174 2e44_A Insulin-like growth fac 99.3 5.3E-12 1.8E-16 80.1 6.0 60 2-92 32-92 (96)
175 3smz_A Protein raver-1, ribonu 99.3 2.3E-11 7.9E-16 90.0 9.9 66 2-94 112-177 (284)
176 3tyt_A Heterogeneous nuclear r 99.3 9.3E-12 3.2E-16 90.0 7.4 59 2-92 22-80 (205)
177 2dha_A FLJ20171 protein; RRM d 99.3 4E-12 1.4E-16 85.9 5.0 61 2-91 40-104 (123)
178 2e5i_A Heterogeneous nuclear r 99.3 1.6E-11 5.5E-16 83.3 8.0 60 1-93 41-103 (124)
179 1wg1_A KIAA1579 protein, homol 99.3 2.6E-11 8.8E-16 76.2 8.3 57 2-92 22-78 (88)
180 1fje_B Nucleolin RBD12, protei 99.3 1.4E-11 4.7E-16 84.9 7.4 45 48-92 130-174 (175)
181 2diu_A KIAA0430 protein; struc 99.3 1.4E-11 4.7E-16 80.6 6.9 56 2-94 30-86 (96)
182 2voo_A Lupus LA protein; RNA-b 99.2 3.8E-11 1.3E-15 86.2 8.3 61 2-91 126-186 (193)
183 3pgw_A U1-A; protein-RNA compl 99.2 3.3E-11 1.1E-15 89.1 8.1 62 2-93 30-91 (282)
184 3nmr_A Cugbp ELAV-like family 99.2 3.2E-11 1.1E-15 82.4 7.3 66 2-94 20-90 (175)
185 2hgm_A HNRPF protein, heteroge 99.2 1.1E-11 3.8E-16 84.3 3.7 60 2-91 59-120 (126)
186 2cjk_A Nuclear polyadenylated 99.2 2.8E-11 9.4E-16 82.5 5.5 62 2-92 20-81 (167)
187 3d2w_A TAR DNA-binding protein 99.2 5.6E-11 1.9E-15 75.4 6.4 57 2-94 28-86 (89)
188 3u1l_A PRE-mRNA-splicing facto 99.2 5.1E-11 1.7E-15 89.0 6.8 59 2-93 160-230 (240)
189 1wf0_A TDP-43, TAR DNA-binding 99.2 2.4E-11 8.2E-16 76.1 4.3 63 2-98 22-84 (88)
190 2hzc_A Splicing factor U2AF 65 99.1 1E-10 3.6E-15 72.5 6.2 40 42-88 47-86 (87)
191 3dxb_A Thioredoxin N-terminall 99.1 1.3E-10 4.6E-15 83.8 7.6 62 2-90 146-211 (222)
192 3pgw_A U1-A; protein-RNA compl 99.1 1.6E-10 5.5E-15 85.4 7.8 58 1-90 223-281 (282)
193 2ghp_A U4/U6 snRNA-associated 99.1 1.2E-10 4.2E-15 86.4 6.8 66 2-95 134-200 (292)
194 2dnr_A Synaptojanin-1; RRM dom 99.1 1.8E-10 6.1E-15 74.7 6.5 55 2-92 32-86 (91)
195 2adc_A Polypyrimidine tract-bi 99.1 2.2E-10 7.6E-15 83.0 7.9 59 2-92 52-110 (229)
196 3sde_A Paraspeckle component 1 99.1 2.8E-10 9.6E-15 84.1 8.2 64 2-93 113-180 (261)
197 1qm9_A Polypyrimidine tract-bi 99.1 1.2E-10 4.2E-15 81.8 5.8 59 2-92 21-79 (198)
198 2dnl_A Cytoplasmic polyadenyla 99.1 3.1E-10 1.1E-14 74.5 6.8 58 2-89 25-85 (114)
199 3tyt_A Heterogeneous nuclear r 99.0 3.5E-10 1.2E-14 81.6 6.3 59 2-89 140-204 (205)
200 1qm9_A Polypyrimidine tract-bi 99.0 2.3E-10 7.9E-15 80.4 5.1 59 2-92 137-197 (198)
201 1fje_B Nucleolin RBD12, protei 99.0 1.2E-10 4E-15 80.2 3.2 48 46-94 46-93 (175)
202 2yh0_A Splicing factor U2AF 65 99.0 3.5E-10 1.2E-14 78.9 4.8 42 50-92 47-88 (198)
203 2adc_A Polypyrimidine tract-bi 99.0 8.2E-10 2.8E-14 80.0 6.6 59 2-92 168-228 (229)
204 3sde_A Paraspeckle component 1 98.9 2.4E-09 8E-14 79.1 7.8 58 2-92 39-96 (261)
205 1ufw_A Synaptojanin 2; RNP dom 98.9 2E-09 7E-14 70.1 5.3 53 2-90 41-93 (95)
206 2g4b_A Splicing factor U2AF 65 98.8 1E-08 3.5E-13 69.9 7.4 42 51-93 48-89 (172)
207 3tht_A Alkylated DNA repair pr 98.8 8.6E-09 2.9E-13 80.5 6.5 56 2-90 37-97 (345)
208 1owx_A Lupus LA protein, SS-B, 98.2 1.8E-06 6.2E-11 58.3 5.0 56 2-90 36-94 (121)
209 2l9w_A U4/U6 snRNA-associated- 97.4 0.0006 2.1E-08 45.5 6.5 42 42-89 56-97 (117)
210 2kn4_A Immunoglobulin G-bindin 97.1 0.00054 1.9E-08 46.2 4.5 35 42-78 3-37 (158)
211 2i2y_A Fusion protein consists 96.9 0.00057 1.9E-08 46.0 3.2 41 50-91 9-50 (150)
212 1wey_A Calcipressin 1; structu 96.7 0.011 3.7E-07 38.8 7.8 37 56-92 48-84 (104)
213 1wwh_A Nucleoporin 35, nucleop 96.4 0.017 5.7E-07 38.7 7.6 55 2-90 40-95 (119)
214 3p3d_A Nucleoporin 53; structu 96.4 0.0033 1.1E-07 42.9 3.9 36 54-90 62-97 (132)
215 1whv_A Poly(A)-specific ribonu 92.9 0.19 6.5E-06 32.6 4.8 38 2-74 32-69 (100)
216 3ctr_A Poly(A)-specific ribonu 90.7 0.2 6.9E-06 32.5 3.0 27 42-75 34-60 (101)
217 3pq1_A Poly(A) RNA polymerase; 83.4 0.8 2.7E-05 36.9 3.2 39 2-72 69-107 (464)
218 2dhx_A Poly (ADP-ribose) polym 69.4 20 0.00068 23.1 6.3 37 55-92 48-84 (104)
219 3d45_A Poly(A)-specific ribonu 57.7 17 0.00057 29.2 5.2 20 56-75 475-494 (507)
220 2g0c_A ATP-dependent RNA helic 51.5 14 0.00049 21.3 3.1 34 56-90 42-75 (76)
221 1uw4_A UPF3X; nonsense mediate 37.9 36 0.0012 21.1 3.4 26 55-80 46-71 (91)
222 3lpe_A Putative transcription 30.7 41 0.0014 20.5 2.8 25 52-76 48-72 (92)
223 2l08_A Regulator of nonsense t 23.6 66 0.0023 20.2 2.8 26 55-80 54-79 (97)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.72 E-value=2.5e-17 Score=107.10 Aligned_cols=64 Identities=39% Similarity=0.650 Sum_probs=61.6
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||+|.. +++++|+.+|+++|||||+|.++++|++|+..|||..++|
T Consensus 36 L~~~F~~~G~I~~---------------------------v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 88 (99)
T 4fxv_A 36 LRSLFSSIGEVES---------------------------AKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS 88 (99)
T ss_dssp HHHHHHTTSCEEE---------------------------EEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred HHHHHHhcCCEEE---------------------------eEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECC
Confidence 7899999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEeccCC
Q 033751 82 RVIFVDNVRPS 92 (112)
Q Consensus 82 ~~i~V~~a~~~ 92 (112)
+.|+|++|+|+
T Consensus 89 r~l~V~~AkPS 99 (99)
T 4fxv_A 89 KTIKVSYARPS 99 (99)
T ss_dssp EECEEEECCBC
T ss_pred EEEEEEEeeCC
Confidence 99999999763
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=104.90 Aligned_cols=65 Identities=18% Similarity=0.351 Sum_probs=62.0
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.+ ++|++|+.|++++|||||+|.+.++|++|+..|||..++|
T Consensus 23 L~~~F~~~G~i~~---------------------------v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g 75 (110)
T 3s8s_A 23 LKDMCRKYGEVEE---------------------------VEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMG 75 (110)
T ss_dssp HHHHHTTTSCEEE---------------------------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred HHHHHHhcCCeeE---------------------------EEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 7899999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEeccCCC
Q 033751 82 RVIFVDNVRPSR 93 (112)
Q Consensus 82 ~~i~V~~a~~~~ 93 (112)
+.|.|+++....
T Consensus 76 r~i~V~~a~~~~ 87 (110)
T 3s8s_A 76 NIIHAQLDIKGQ 87 (110)
T ss_dssp EECEEEECSTTH
T ss_pred eEEEEEECCCCc
Confidence 999999997543
No 3
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.9e-16 Score=99.78 Aligned_cols=71 Identities=35% Similarity=0.590 Sum_probs=65.6
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +.++.++.+++++|||||+|.+.++|++|+..|||..++|
T Consensus 22 l~~~f~~~G~v~~---------------------------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (95)
T 2dnz_A 22 LRGIFEPFGKIDN---------------------------IVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG 74 (95)
T ss_dssp HHHHHTTTSCEEE---------------------------EEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred HHHHHHhcCCEeE---------------------------EEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 7899999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEeccCCCCCCCCC
Q 033751 82 RVIFVDNVRPSRRYNTDA 99 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~~~~ 99 (112)
+.|.|++++++...+.++
T Consensus 75 ~~l~V~~a~~~~~~~~~~ 92 (95)
T 2dnz_A 75 RPMRVGHVTERLDGGSGP 92 (95)
T ss_dssp SCCEEEESSCCCCCCCCC
T ss_pred cEEEEEEcccccCCCCCC
Confidence 999999998776655443
No 4
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.66 E-value=7.1e-16 Score=101.54 Aligned_cols=70 Identities=30% Similarity=0.467 Sum_probs=65.0
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. ++|++++.+++++|||||+|.+.++|++|+..|||..++|
T Consensus 42 l~~~F~~~G~i~~---------------------------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 94 (115)
T 2cpz_A 42 LLQMFMPFGNVVS---------------------------AKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM 94 (115)
T ss_dssp HHHHHGGGSCCSE---------------------------EEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred HHHHHHhcCCeEE---------------------------EEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECC
Confidence 7899999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEeccCCCCCCCC
Q 033751 82 RVIFVDNVRPSRRYNTD 98 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~~~ 98 (112)
+.|.|+++++.....+.
T Consensus 95 ~~l~V~~a~~~~~~~~~ 111 (115)
T 2cpz_A 95 KRLKVQLKRSKNDSKSG 111 (115)
T ss_dssp EECEEECCCCSCCCCCC
T ss_pred EEEEEEEcCCCCcCCCC
Confidence 99999999877665443
No 5
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5e-16 Score=98.88 Aligned_cols=69 Identities=30% Similarity=0.515 Sum_probs=64.1
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEE-EEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAA-TIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
|+++|++||.|.. + +|++|+.++.++|||||+|.++++|++|+..|||..++
T Consensus 22 l~~~F~~~G~i~~---------------------------~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 74 (96)
T 1x5t_A 22 LYDTFSAFGVILQ---------------------------TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC 74 (96)
T ss_dssp HHHHHHTTSCBSS---------------------------CCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEET
T ss_pred HHHHHHhcCCeeE---------------------------EEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 7899999999999 8 99999889999999999999999999999999999999
Q ss_pred CeeEEEEeccCCCCCCC
Q 033751 81 GRVIFVDNVRPSRRYNT 97 (112)
Q Consensus 81 g~~i~V~~a~~~~~~~~ 97 (112)
|+.|.|+++.+...+..
T Consensus 75 g~~l~v~~a~~~~~~~~ 91 (96)
T 1x5t_A 75 NRPITVSYAFKKDSKGS 91 (96)
T ss_dssp TEECEEEESCCCCCCCC
T ss_pred CEEEEEEEecccCCCCC
Confidence 99999999987665543
No 6
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.66 E-value=1.8e-15 Score=99.38 Aligned_cols=68 Identities=31% Similarity=0.588 Sum_probs=63.6
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. ++|++++.++.++|||||+|.++++|++|+..|||..++|
T Consensus 32 l~~~F~~~G~i~~---------------------------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (115)
T 2dgo_A 32 IKAAFAPFGRISD---------------------------ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 84 (115)
T ss_dssp HHHHHGGGSCEEE---------------------------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT
T ss_pred HHHHHHhcCCeEE---------------------------EEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 7899999999999 9999999899999999999999999999999999999999
Q ss_pred eeEEEEeccCCCCCC
Q 033751 82 RVIFVDNVRPSRRYN 96 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~ 96 (112)
+.|.|+++++.....
T Consensus 85 ~~l~V~~a~~~~~~~ 99 (115)
T 2dgo_A 85 RQIRTNWATRKPPAP 99 (115)
T ss_dssp EECEEEESSCCCCCS
T ss_pred EEEEEEEccCCCCCC
Confidence 999999998765543
No 7
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.8e-16 Score=100.09 Aligned_cols=70 Identities=33% Similarity=0.556 Sum_probs=64.9
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. ++|+.|+.+++++|||||+|.++++|++|+..|||..++|
T Consensus 29 l~~~f~~~G~i~~---------------------------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 81 (102)
T 2cqb_A 29 LHAAFIPFGDITD---------------------------IQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG 81 (102)
T ss_dssp HHHHHTTTSCCCC---------------------------EECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETT
T ss_pred HHHHhhccCCEEE---------------------------EEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 7899999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEeccCCCCCCCC
Q 033751 82 RVIFVDNVRPSRRYNTD 98 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~~~ 98 (112)
+.|.|+++++...+.+.
T Consensus 82 ~~l~V~~a~~~~~~~~~ 98 (102)
T 2cqb_A 82 RTIRVNLAKPMRIKESG 98 (102)
T ss_dssp EEEEEEECCCCCCCCCC
T ss_pred cEEEEEeCCCCCCCCCC
Confidence 99999999877665543
No 8
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.65 E-value=1e-15 Score=94.91 Aligned_cols=65 Identities=29% Similarity=0.587 Sum_probs=61.9
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||+|.. +.+++++.+++++|||||+|.++++|++|+..|||..++|
T Consensus 18 l~~~f~~~G~i~~---------------------------~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g 70 (83)
T 3md1_A 18 LRNAFKDFPSYLS---------------------------GHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG 70 (83)
T ss_dssp HHHHHTTSTTEEE---------------------------EEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred HHHHHHhcCCeeE---------------------------EEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCC
Confidence 7899999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEeccCCC
Q 033751 82 RVIFVDNVRPSR 93 (112)
Q Consensus 82 ~~i~V~~a~~~~ 93 (112)
+.|.|+++++++
T Consensus 71 ~~l~v~~a~~~~ 82 (83)
T 3md1_A 71 RPLRINWAAKLE 82 (83)
T ss_dssp EECEEEECCCCC
T ss_pred cEEEEEecCcCC
Confidence 999999998754
No 9
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=9e-16 Score=99.11 Aligned_cols=69 Identities=28% Similarity=0.531 Sum_probs=64.1
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +.|+.++.+++++|||||+|.++++|++|+..|||..++|
T Consensus 32 l~~~f~~~G~i~~---------------------------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 84 (103)
T 2cq0_A 32 LQELFRPFGSISR---------------------------IYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH 84 (103)
T ss_dssp HHTTSTTTCCEEE---------------------------EEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT
T ss_pred HHHHHHhCCCeEE---------------------------EEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 7889999999999 9999999899999999999999999999999999999999
Q ss_pred eeEEEEeccCCCCCCC
Q 033751 82 RVIFVDNVRPSRRYNT 97 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~~ 97 (112)
+.|.|+++++.....+
T Consensus 85 ~~l~v~~a~~~~~~~~ 100 (103)
T 2cq0_A 85 LILNVEWAKPSTNSGP 100 (103)
T ss_dssp EECEEEESSCCCCSCC
T ss_pred cEEEEEECCCCCCCCC
Confidence 9999999987665543
No 10
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=9.1e-16 Score=98.44 Aligned_cols=69 Identities=30% Similarity=0.577 Sum_probs=63.7
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. ++|+.|+.+++++|||||+|.+.++|++|+. ||+..++|
T Consensus 27 l~~~F~~~G~i~~---------------------------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g 78 (99)
T 2dgs_A 27 LREYFKKFGVVTE---------------------------VVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMG 78 (99)
T ss_dssp HHHHHSSSSCEEE---------------------------EEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSS
T ss_pred HHHHHHhcCCeEE---------------------------EEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECC
Confidence 7899999999999 9999999999999999999999999999999 99999999
Q ss_pred eeEEEEeccCCCCCCCC
Q 033751 82 RVIFVDNVRPSRRYNTD 98 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~~~ 98 (112)
+.|.|+++.+.......
T Consensus 79 ~~l~V~~a~~~~~~~~~ 95 (99)
T 2dgs_A 79 KKVEVKRAEPRDSKSSG 95 (99)
T ss_dssp CBCEEEECCCCCCCCCC
T ss_pred eEEEEEECCCCcccCCC
Confidence 99999999876655443
No 11
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=9.9e-16 Score=98.13 Aligned_cols=68 Identities=29% Similarity=0.523 Sum_probs=63.7
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||+|.. ++++.++.+++++|||||+|.+.++|++|+..|||..++|
T Consensus 25 l~~~F~~~G~i~~---------------------------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 77 (99)
T 1whw_A 25 LEKLFSAYGPLSE---------------------------LHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG 77 (99)
T ss_dssp HHHHHHTTSCEEE---------------------------EECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSS
T ss_pred HHHHHHhcCCEeE---------------------------EEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 7899999999999 9999999899999999999999999999999999999999
Q ss_pred eeEEEEeccCCCCCC
Q 033751 82 RVIFVDNVRPSRRYN 96 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~ 96 (112)
+.|.|+++++.....
T Consensus 78 ~~l~V~~a~~~~~~~ 92 (99)
T 1whw_A 78 RMLHVLPSTIKKEAS 92 (99)
T ss_dssp CEEEEEECCCCSTTC
T ss_pred cEEEEEEcCCCcccc
Confidence 999999998766543
No 12
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.64 E-value=1.6e-16 Score=100.78 Aligned_cols=66 Identities=20% Similarity=0.352 Sum_probs=58.3
Q ss_pred HHHHhhccC--cceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCcee
Q 033751 2 LADAFSQFG--QVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 79 (112)
Q Consensus 2 l~~~f~~~G--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l 79 (112)
|+++|++|| .|.+ ++++.|+.+|+++|||||+|.+.++|++|+..|||..+
T Consensus 18 l~~~F~~~G~~~v~~---------------------------v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~ 70 (90)
T 3p5t_L 18 LTEAVHSLGVNDILE---------------------------IKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL 70 (90)
T ss_dssp HHHHHHTTTCCCCCC---------------------------EEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCS
T ss_pred HHHHHHHhCCCceEE---------------------------EEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCee
Confidence 789999999 9999 99999999999999999999999999999999999999
Q ss_pred CCeeEEEEeccCCCC
Q 033751 80 DGRVIFVDNVRPSRR 94 (112)
Q Consensus 80 ~g~~i~V~~a~~~~~ 94 (112)
+|+.|.|+.+.+...
T Consensus 71 ~gr~i~V~~~~~~~~ 85 (90)
T 3p5t_L 71 HGQNPVVTPSNKLEH 85 (90)
T ss_dssp SSCCCEECCC-----
T ss_pred CCEEEEEEECCCCcc
Confidence 999999999976544
No 13
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.64 E-value=1.1e-15 Score=95.45 Aligned_cols=64 Identities=34% Similarity=0.665 Sum_probs=60.2
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +.++.++.+++++|||||+|.+.++|++|+..|||..++|
T Consensus 23 l~~~F~~~G~i~~---------------------------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 75 (87)
T 3bs9_A 23 IAAAFAPFGRISD---------------------------ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 75 (87)
T ss_dssp HHHHHGGGSCEEE---------------------------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred HHHHHHhcCCEeE---------------------------EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 7899999999999 9999999899999999999999999999999999999999
Q ss_pred eeEEEEeccCC
Q 033751 82 RVIFVDNVRPS 92 (112)
Q Consensus 82 ~~i~V~~a~~~ 92 (112)
+.|.|++++++
T Consensus 76 ~~l~v~~a~~k 86 (87)
T 3bs9_A 76 RQIRTNWATRK 86 (87)
T ss_dssp EECEEEEEC--
T ss_pred eEEEEEecCCC
Confidence 99999999764
No 14
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.64 E-value=2e-16 Score=101.17 Aligned_cols=67 Identities=18% Similarity=0.379 Sum_probs=60.6
Q ss_pred HHHHhhccC-cceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhC-Ccee
Q 033751 2 LADAFSQFG-QVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMN-GKLL 79 (112)
Q Consensus 2 l~~~f~~~G-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~-g~~l 79 (112)
|+++|++|| +|.+ ++|++|+.+++++|||||+|.++++|++|+..++ +..+
T Consensus 18 l~~~F~~~G~~v~~---------------------------v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~ 70 (91)
T 2lxi_A 18 IRGQLQSHGVQARE---------------------------VRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNI 70 (91)
T ss_dssp HHHHHHHHTCCCSB---------------------------CCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEE
T ss_pred HHHHHHHhCCEeEE---------------------------EEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEE
Confidence 789999999 7999 9999999999999999999999999999999874 5679
Q ss_pred CCeeEEEEeccCCCCC
Q 033751 80 DGRVIFVDNVRPSRRY 95 (112)
Q Consensus 80 ~g~~i~V~~a~~~~~~ 95 (112)
+|++|.|++|.++...
T Consensus 71 ~gr~i~V~~a~~~~~~ 86 (91)
T 2lxi_A 71 LGQKVSMHYSDPKPKI 86 (91)
T ss_dssp TTEEEEEECCCSCCCC
T ss_pred CCEEEEEEEcCCCCCC
Confidence 9999999999876543
No 15
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.7e-16 Score=99.40 Aligned_cols=69 Identities=39% Similarity=0.729 Sum_probs=64.2
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||+|.. ++++.++.+++++|||||+|.++++|++|+..|||..++|
T Consensus 29 l~~~f~~~G~i~~---------------------------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 81 (102)
T 1x5s_A 29 LEQVFSKYGQISE---------------------------VVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG 81 (102)
T ss_dssp HHHHHHHHSCCCE---------------------------EEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTS
T ss_pred HHHHHHhcCCeEE---------------------------EEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 7899999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEeccCCCCCCC
Q 033751 82 RVIFVDNVRPSRRYNT 97 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~~ 97 (112)
+.|.|+++++......
T Consensus 82 ~~l~v~~a~~~~~~~~ 97 (102)
T 1x5s_A 82 RQIRVDQAGKSSDNRS 97 (102)
T ss_dssp CCCEEEEEECCCCCCC
T ss_pred eEEEEEECCCCCCCCC
Confidence 9999999987665544
No 16
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.64 E-value=2.5e-16 Score=102.04 Aligned_cols=64 Identities=25% Similarity=0.480 Sum_probs=61.3
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||+|.+ ++|++|+.|++++|||||+|.++++|++|+..|||..++|
T Consensus 29 L~~~F~~~G~i~~---------------------------v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 29 LTSLFSKAGKVVN---------------------------MEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp HHHHHHTTSCEEE---------------------------EECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred HHHHHHhcCCEeE---------------------------EEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 7899999999999 9999999999999999999999999999999999999999
Q ss_pred -eeEEEEeccCC
Q 033751 82 -RVIFVDNVRPS 92 (112)
Q Consensus 82 -~~i~V~~a~~~ 92 (112)
+.|.|+++.+.
T Consensus 82 ~r~l~V~~a~~~ 93 (100)
T 3ns6_A 82 KHRLFLYTMKDV 93 (100)
T ss_dssp SCBCEEEESHHH
T ss_pred CeEEEEEECchh
Confidence 99999999764
No 17
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.3e-15 Score=97.40 Aligned_cols=69 Identities=30% Similarity=0.479 Sum_probs=62.9
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCC---CCCcccEEEEEeCCHHHHHHHHHhhCCce
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKG---KNRSKGYGYVTFSTEEEAQKALADMNGKL 78 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~---t~~~rG~afV~f~~~~~a~~Ai~~l~g~~ 78 (112)
|+++|++||+|.. +.++.++. +++++|||||+|.+.++|++|+..|||..
T Consensus 22 l~~~F~~~G~i~~---------------------------v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~ 74 (98)
T 2cpf_A 22 LKGVFSKVGAIKS---------------------------CTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHT 74 (98)
T ss_dssp HHHHHHTTSCEEE---------------------------EEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCE
T ss_pred HHHHHHhcCCeEE---------------------------EEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCe
Confidence 7899999999999 99999886 66899999999999999999999999999
Q ss_pred eCCeeEEEEeccCCCCCCC
Q 033751 79 LDGRVIFVDNVRPSRRYNT 97 (112)
Q Consensus 79 l~g~~i~V~~a~~~~~~~~ 97 (112)
++|+.|.|+++.+......
T Consensus 75 ~~g~~l~V~~a~~~~~~~~ 93 (98)
T 2cpf_A 75 VDGHKLEVRISERATKPAS 93 (98)
T ss_dssp ETTEECEEECSSCSSCCCC
T ss_pred eCCeEEEEEEccCCCCCCC
Confidence 9999999999987665444
No 18
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.3e-15 Score=99.84 Aligned_cols=69 Identities=30% Similarity=0.400 Sum_probs=63.8
Q ss_pred HHHHhhccCcce--------ecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHh
Q 033751 2 LADAFSQFGQVT--------EDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALAD 73 (112)
Q Consensus 2 l~~~f~~~G~i~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~ 73 (112)
|+++|++||.|. . ++|+.|+.+++++|||||+|.++++|++|+..
T Consensus 32 l~~~F~~~G~i~~~~~~~~~~---------------------------v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 84 (113)
T 2cpe_A 32 LADFFKQCGVVKMNKRTGQPM---------------------------IHIYLDKETGKPKGDATVSYEDPPTAKAAVEW 84 (113)
T ss_dssp HHHHHTTTSCBCBCSSSCCBS---------------------------EECCBCTTTCSBCSEEEEEBSSHHHHHHHHHH
T ss_pred HHHHHHhcCCEeEccccCccC---------------------------EEEEEeCCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 789999999998 6 89999988999999999999999999999999
Q ss_pred hCCceeCCeeEEEEeccCCCCCCC
Q 033751 74 MNGKLLDGRVIFVDNVRPSRRYNT 97 (112)
Q Consensus 74 l~g~~l~g~~i~V~~a~~~~~~~~ 97 (112)
|||..++|+.|.|+++++......
T Consensus 85 l~g~~~~g~~l~V~~a~~~~~~~~ 108 (113)
T 2cpe_A 85 FDGKDFQGSKLKVSLARKKPPMNS 108 (113)
T ss_dssp HTTCEETTEECEEECSSCCCCSTT
T ss_pred cCCCccCCCEEEEEECCCCCCCCC
Confidence 999999999999999987665544
No 19
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=6.4e-16 Score=99.81 Aligned_cols=69 Identities=32% Similarity=0.518 Sum_probs=64.1
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +.|+.++.+++++|||||+|.++++|++|+..|||..++|
T Consensus 30 l~~~f~~~G~i~~---------------------------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 82 (103)
T 2dnm_A 30 LRRVFEKYGRVGD---------------------------VYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDG 82 (103)
T ss_dssp HHHHHTTTSCEEE---------------------------EECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTT
T ss_pred HHHHHHhcCCEEE---------------------------EEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 7899999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEeccCCCCCCC
Q 033751 82 RVIFVDNVRPSRRYNT 97 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~~ 97 (112)
+.|.|+++++......
T Consensus 83 ~~l~V~~a~~~~~~~~ 98 (103)
T 2dnm_A 83 RELRVQVARYGRRDLS 98 (103)
T ss_dssp BCCEEEECSSCCSCCC
T ss_pred cEEEEEECCcCCCCCC
Confidence 9999999987655444
No 20
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.63 E-value=4e-16 Score=101.27 Aligned_cols=63 Identities=25% Similarity=0.476 Sum_probs=58.5
Q ss_pred HHHHhhccCc--ceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCc--
Q 033751 2 LADAFSQFGQ--VTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGK-- 77 (112)
Q Consensus 2 l~~~f~~~G~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~-- 77 (112)
|+++|++||. +.+ +++++|+.+++++|||||+|.++++|++|+..|||.
T Consensus 26 L~~~F~~~G~i~v~~---------------------------v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~ 78 (95)
T 2lkz_A 26 IMTALSPYASLAVNN---------------------------IRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHP 78 (95)
T ss_dssp HHHHSTTTCCCCGGG---------------------------EECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSS
T ss_pred HHHHHHhhCCccEEE---------------------------EEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCC
Confidence 7899999995 567 999999999999999999999999999999999997
Q ss_pred --eeCCeeEEEEeccC
Q 033751 78 --LLDGRVIFVDNVRP 91 (112)
Q Consensus 78 --~l~g~~i~V~~a~~ 91 (112)
.++|++|.|++|++
T Consensus 79 ~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 79 PLKIDGKTIGVDFAKS 94 (95)
T ss_dssp CEEETTEEEEEEECCC
T ss_pred CceECCEEEEEEEccC
Confidence 48999999999975
No 21
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.63 E-value=1.1e-15 Score=99.02 Aligned_cols=70 Identities=26% Similarity=0.383 Sum_probs=64.4
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCcee--
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL-- 79 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l-- 79 (112)
|+++|++||.|.. ++|+.|+.+++++|||||+|.+.++|++|+..|||..+
T Consensus 30 l~~~F~~~G~i~~---------------------------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 82 (106)
T 2dgp_A 30 LKPLFEEFGKIYE---------------------------LTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLP 82 (106)
T ss_dssp HHHHHHHHSCCCE---------------------------EECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHhcCCeeE---------------------------EEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccC
Confidence 7899999999999 99999999999999999999999999999999999998
Q ss_pred -CCeeEEEEeccCCCCCCCC
Q 033751 80 -DGRVIFVDNVRPSRRYNTD 98 (112)
Q Consensus 80 -~g~~i~V~~a~~~~~~~~~ 98 (112)
+|+.|.|+++.+......+
T Consensus 83 ~~g~~l~v~~a~~~~~~~~~ 102 (106)
T 2dgp_A 83 GMNRPIQVKPADSESRGGSG 102 (106)
T ss_dssp TCSSCCEEEECCCCSCCCCC
T ss_pred CCCceEEEEECCcccccCCC
Confidence 8999999999876665443
No 22
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=98.52 Aligned_cols=69 Identities=29% Similarity=0.420 Sum_probs=64.1
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +.++.++.+++++|||||+|.++++|++|+..|||..++|
T Consensus 32 l~~~F~~~G~i~~---------------------------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (105)
T 1x5u_A 32 LWELFLQAGPVVN---------------------------THMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG 84 (105)
T ss_dssp HHHHHHTTSCEEE---------------------------EECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS
T ss_pred HHHHHHhcCCeEE---------------------------EEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 7899999999999 9999999899999999999999999999999999999999
Q ss_pred eeEEEEeccCCCCCCC
Q 033751 82 RVIFVDNVRPSRRYNT 97 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~~ 97 (112)
+.|.|+++.+......
T Consensus 85 ~~l~v~~a~~~~~~~~ 100 (105)
T 1x5u_A 85 KPIRVNKASAHNKNLS 100 (105)
T ss_dssp CBCEEEETTTTSCCCC
T ss_pred eEEEEEECCCCCcCCC
Confidence 9999999987665443
No 23
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=2.1e-15 Score=97.67 Aligned_cols=69 Identities=23% Similarity=0.511 Sum_probs=63.9
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEee-CCCCCcccEEEEEeCCHHHHHHHHHhh-CCcee
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMD-KGKNRSKGYGYVTFSTEEEAQKALADM-NGKLL 79 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d-~~t~~~rG~afV~f~~~~~a~~Ai~~l-~g~~l 79 (112)
|+++|++||.|.. ++|+.+ +.+++++|||||+|.++++|++|+..| ||..+
T Consensus 32 l~~~F~~~G~i~~---------------------------v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 84 (107)
T 2cph_A 32 IRELFSTFGELKT---------------------------VRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL 84 (107)
T ss_dssp HHHHHHTTSCEEE---------------------------EECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS
T ss_pred HHHHHHccCCeEE---------------------------EEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE
Confidence 7899999999999 999999 789999999999999999999999999 99999
Q ss_pred CCeeEEEEeccCCCCCCC
Q 033751 80 DGRVIFVDNVRPSRRYNT 97 (112)
Q Consensus 80 ~g~~i~V~~a~~~~~~~~ 97 (112)
+|+.|.|+++++......
T Consensus 85 ~g~~l~v~~a~~~~~~~~ 102 (107)
T 2cph_A 85 YGRRLVLEWADSEVTVQS 102 (107)
T ss_dssp SSCBCEEEECCCCCCCCC
T ss_pred CCCEEEEEeCCCCCCCCC
Confidence 999999999987665544
No 24
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.61 E-value=3.6e-15 Score=100.90 Aligned_cols=69 Identities=26% Similarity=0.501 Sum_probs=64.1
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|+.||.|.. ++|++++.+++++|||||+|.+.++|++|+..|||..++|
T Consensus 59 l~~~F~~~G~i~~---------------------------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 111 (139)
T 1u6f_A 59 LRQLFERYGPIES---------------------------VKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN 111 (139)
T ss_dssp HHHHHHHHSCEEE---------------------------EEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS
T ss_pred HHHHHHhcCCeEE---------------------------EEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 7899999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEeccCCCCCCC
Q 033751 82 RVIFVDNVRPSRRYNT 97 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~~ 97 (112)
+.|.|+++++...+..
T Consensus 112 ~~l~v~~a~~~~~~~~ 127 (139)
T 1u6f_A 112 KRLKVALAASGHQRPG 127 (139)
T ss_dssp CEEEEEESSCCCCCCC
T ss_pred eEEEEEECCCCCCCCC
Confidence 9999999987655433
No 25
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2e-15 Score=97.79 Aligned_cols=65 Identities=31% Similarity=0.491 Sum_probs=61.9
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +.++.++.+++++|||||+|.+.++|++|+..|||..++|
T Consensus 40 l~~~f~~~G~i~~---------------------------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 92 (106)
T 1p27_B 40 IHDKFAEYGEIKN---------------------------IHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG 92 (106)
T ss_dssp HHHHHGGGSCEEE---------------------------EEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS
T ss_pred HHHHHhccCCeEE---------------------------EEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC
Confidence 7899999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEeccCCC
Q 033751 82 RVIFVDNVRPSR 93 (112)
Q Consensus 82 ~~i~V~~a~~~~ 93 (112)
+.|.|+++.+..
T Consensus 93 ~~l~V~~a~~~~ 104 (106)
T 1p27_B 93 QPISVDWCFVRG 104 (106)
T ss_dssp SBCEEEESEESS
T ss_pred cEEEEEeecCCC
Confidence 999999997654
No 26
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2.8e-15 Score=97.63 Aligned_cols=69 Identities=32% Similarity=0.506 Sum_probs=64.0
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhC------
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMN------ 75 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~------ 75 (112)
|+++|++||.|.. ++|++|+.++.++|||||+|.+.++|++|+..||
T Consensus 32 l~~~F~~~G~i~~---------------------------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~ 84 (111)
T 1x4h_A 32 LGEVLQQFGDLKY---------------------------VRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGG 84 (111)
T ss_dssp HHHHHHTTSCEEE---------------------------EECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTC
T ss_pred HHHHHHhcCCeEE---------------------------EEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccC
Confidence 7899999999999 9999999999999999999999999999999999
Q ss_pred CceeCCeeEEEEeccCCCCCCC
Q 033751 76 GKLLDGRVIFVDNVRPSRRYNT 97 (112)
Q Consensus 76 g~~l~g~~i~V~~a~~~~~~~~ 97 (112)
|..++|+.|.|+++.++.....
T Consensus 85 ~~~~~g~~l~v~~a~~~~~~~~ 106 (111)
T 1x4h_A 85 GLKLDGRQLKVDLAVTRDEAAS 106 (111)
T ss_dssp CEESSSCEEEEECCCCCCCCCC
T ss_pred CcEEcCEEEEEEECCCCccCCC
Confidence 9999999999999987655443
No 27
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3.3e-15 Score=95.96 Aligned_cols=66 Identities=21% Similarity=0.429 Sum_probs=61.9
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. ++++.++ +++++|||||+|.++++|++|+..|||..++|
T Consensus 34 l~~~F~~~G~i~~---------------------------v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 85 (100)
T 2do4_A 34 LEEICKAHGTVKD---------------------------LRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKE 85 (100)
T ss_dssp HHHHHTTTSCEEE---------------------------EEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSS
T ss_pred HHHHHHhCCCeEE---------------------------EEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 7899999999999 9999998 89999999999999999999999999999999
Q ss_pred eeEEEEeccCCCCC
Q 033751 82 RVIFVDNVRPSRRY 95 (112)
Q Consensus 82 ~~i~V~~a~~~~~~ 95 (112)
+.|.|+++++...+
T Consensus 86 ~~l~v~~a~~~~~~ 99 (100)
T 2do4_A 86 NIIKVAISNSGPSS 99 (100)
T ss_dssp CEEEEEECCCCSCC
T ss_pred EEEEEEECCCCCCC
Confidence 99999999876543
No 28
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=8.9e-15 Score=95.78 Aligned_cols=68 Identities=35% Similarity=0.453 Sum_probs=62.1
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. ++|+.++ +++++|||||+|.+.++|++|+..|||..++|
T Consensus 32 l~~~f~~~G~i~~---------------------------~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 83 (114)
T 2do0_A 32 LKEVFSMAGVVVR---------------------------ADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD 83 (114)
T ss_dssp HHHHHTTTSCEEE---------------------------EEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred HHHHHHhcCCeEE---------------------------EEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 7899999999999 9999998 69999999999999999999999999999999
Q ss_pred eeEEEEeccCCCCCCC
Q 033751 82 RVIFVDNVRPSRRYNT 97 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~~ 97 (112)
+.|.|++++....+..
T Consensus 84 ~~l~v~~a~~~~~~~~ 99 (114)
T 2do0_A 84 RPMHVKMDERALPKGD 99 (114)
T ss_dssp EECEEEECSCCCCCSC
T ss_pred CEEEEEEcccCCCCCC
Confidence 9999999976554433
No 29
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=3.9e-15 Score=96.21 Aligned_cols=67 Identities=24% Similarity=0.483 Sum_probs=61.6
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++|| |.. ++|++|+.+++++|||||+|.++++|++|+ .|||..++|
T Consensus 32 l~~~F~~~g-i~~---------------------------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 82 (103)
T 2dng_A 32 IDAIFKDLS-IRS---------------------------VRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD 82 (103)
T ss_dssp HHHHTTTSC-EEE---------------------------EEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred HHHHHHhCC-ceE---------------------------EEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECC
Confidence 788999997 888 999999999999999999999999999999 899999999
Q ss_pred eeEEEEeccCCCCCCC
Q 033751 82 RVIFVDNVRPSRRYNT 97 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~~ 97 (112)
+.|.|+++.+......
T Consensus 83 ~~l~V~~a~~~~~~~~ 98 (103)
T 2dng_A 83 RSLRVDIAEGRKQDKS 98 (103)
T ss_dssp EECEEEECCCCCCCCS
T ss_pred eEEEEEEecCCCCCCC
Confidence 9999999987665444
No 30
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.61 E-value=2.6e-15 Score=95.92 Aligned_cols=66 Identities=27% Similarity=0.449 Sum_probs=62.4
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. ++++.++.+++++|||||+|.+.++|++|+..|||..++|
T Consensus 19 l~~~F~~~G~i~~---------------------------v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 71 (96)
T 2x1f_A 19 ILDLCSNVGPVIN---------------------------LKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGS 71 (96)
T ss_dssp HHHHHHTTSCEEE---------------------------EECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred HHHHHHhcCCEEE---------------------------EEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 7899999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEeccCCCC
Q 033751 82 RVIFVDNVRPSRR 94 (112)
Q Consensus 82 ~~i~V~~a~~~~~ 94 (112)
+.|.|+++.+...
T Consensus 72 ~~l~V~~a~~~~~ 84 (96)
T 2x1f_A 72 RFLKCGYSSNSDI 84 (96)
T ss_dssp EECEEEECSCSSG
T ss_pred eEEEEEEcCCCCC
Confidence 9999999987543
No 31
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.61 E-value=2.1e-15 Score=93.86 Aligned_cols=62 Identities=34% Similarity=0.580 Sum_probs=59.5
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||+|.. +.+++++.+++++|||||+|.++++|++|+..|||..++|
T Consensus 24 l~~~f~~~G~i~~---------------------------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 76 (85)
T 3mdf_A 24 LHAAFIPFGDITD---------------------------IQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG 76 (85)
T ss_dssp HHHHHGGGSCEEE---------------------------EECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred HHHHHhccCCEEE---------------------------EEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 7899999999999 9999998899999999999999999999999999999999
Q ss_pred eeEEEEecc
Q 033751 82 RVIFVDNVR 90 (112)
Q Consensus 82 ~~i~V~~a~ 90 (112)
+.|.|++++
T Consensus 77 ~~l~v~~ak 85 (85)
T 3mdf_A 77 RTIRVNLAK 85 (85)
T ss_dssp EECEEEECC
T ss_pred cEEEEEEcC
Confidence 999999874
No 32
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.61 E-value=3.8e-15 Score=98.99 Aligned_cols=66 Identities=32% Similarity=0.630 Sum_probs=61.6
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +.++.++ +++++|||||+|.+.++|++|+..|||..++|
T Consensus 24 l~~~F~~~G~i~~---------------------------v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g 75 (116)
T 2fy1_A 24 LKAVFGKHGPISE---------------------------VLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHG 75 (116)
T ss_dssp HHHHHHTSSCCSE---------------------------EEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSS
T ss_pred HHHHHHhcCCEEE---------------------------EEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 7899999999999 9999998 99999999999999999999999999999999
Q ss_pred eeEEEEeccCCCCC
Q 033751 82 RVIFVDNVRPSRRY 95 (112)
Q Consensus 82 ~~i~V~~a~~~~~~ 95 (112)
+.|.|+++++....
T Consensus 76 ~~l~V~~a~~~~~~ 89 (116)
T 2fy1_A 76 KAIKVEQAKKPSFQ 89 (116)
T ss_dssp SBCEEEECCCSSCS
T ss_pred EEEEEEECCCCCCC
Confidence 99999999765543
No 33
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.5e-15 Score=96.60 Aligned_cols=68 Identities=21% Similarity=0.403 Sum_probs=62.4
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCC-CCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGK-NRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t-~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
|+++|++|| |.. ++|++++.+ ++++|||||+|.++++|++|+ .|||..++
T Consensus 32 l~~~F~~~G-i~~---------------------------v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 82 (104)
T 1wi8_A 32 IKEFFRGLN-ISA---------------------------VRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG 82 (104)
T ss_dssp HHHHTTTSC-EEE---------------------------EECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEET
T ss_pred HHHHHHHCC-ceE---------------------------EEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeC
Confidence 789999999 999 999999987 999999999999999999999 89999999
Q ss_pred CeeEEEEeccCCCCCCCC
Q 033751 81 GRVIFVDNVRPSRRYNTD 98 (112)
Q Consensus 81 g~~i~V~~a~~~~~~~~~ 98 (112)
|+.|.|++++++....++
T Consensus 83 g~~l~V~~a~~~~~~~~~ 100 (104)
T 1wi8_A 83 NKRIRVDVADQAQDKDSG 100 (104)
T ss_dssp TEECEEEECCCCCCCCCC
T ss_pred CcEEEEEEccCCCCCCCC
Confidence 999999999887665543
No 34
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.3e-15 Score=94.19 Aligned_cols=63 Identities=33% Similarity=0.638 Sum_probs=60.5
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +.++.++.+++++|||||+|.++++|++|+..|||..++|
T Consensus 32 l~~~f~~~G~v~~---------------------------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 84 (95)
T 2cqc_A 32 LREVFSKYGPIAD---------------------------VSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG 84 (95)
T ss_dssp HHHHHHTTSCEEE---------------------------EEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred HHHHHHhcCCeeE---------------------------EEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 7899999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEeccC
Q 033751 82 RVIFVDNVRP 91 (112)
Q Consensus 82 ~~i~V~~a~~ 91 (112)
+.|.|+++++
T Consensus 85 ~~l~v~~a~~ 94 (95)
T 2cqc_A 85 RRIRVSGPSS 94 (95)
T ss_dssp EEEEEECCSC
T ss_pred EEEEEEecCC
Confidence 9999999875
No 35
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.60 E-value=3.1e-15 Score=97.57 Aligned_cols=66 Identities=26% Similarity=0.445 Sum_probs=62.4
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +.++.++.+++++|||||+|.+.++|++|+..|||..++|
T Consensus 43 l~~~F~~~G~i~~---------------------------v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 95 (110)
T 1oo0_B 43 IQEKFCDYGEIKN---------------------------IHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG 95 (110)
T ss_dssp HHHHHGGGSCEEE---------------------------EECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred HHHHHHhcCCEEE---------------------------EEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 7899999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEeccCCCC
Q 033751 82 RVIFVDNVRPSRR 94 (112)
Q Consensus 82 ~~i~V~~a~~~~~ 94 (112)
+.|.|+++.+...
T Consensus 96 ~~l~V~~a~~~~~ 108 (110)
T 1oo0_B 96 QTIQVDWCFVKGP 108 (110)
T ss_dssp EECEEEESEESSC
T ss_pred cEEEEEEcccCCC
Confidence 9999999986554
No 36
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=4.3e-15 Score=95.87 Aligned_cols=68 Identities=38% Similarity=0.724 Sum_probs=62.5
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. ++|+.+ ++.++|||||+|.+.++|++|+..|||..++|
T Consensus 32 l~~~F~~~G~i~~---------------------------v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 82 (103)
T 2d9p_A 32 LRKAFSPFGTITS---------------------------AKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 82 (103)
T ss_dssp HHHTTTTTSCEEE---------------------------EEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred HHHHHHhcCCEEE---------------------------EEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 7899999999999 999998 89999999999999999999999999999999
Q ss_pred eeEEEEeccCCCCCCCC
Q 033751 82 RVIFVDNVRPSRRYNTD 98 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~~~ 98 (112)
+.|.|+++++...+...
T Consensus 83 ~~l~V~~a~~~~~~~~~ 99 (103)
T 2d9p_A 83 KPLYVALAQRKEERQSG 99 (103)
T ss_dssp SBCEEEECSSCCCCCCC
T ss_pred cEEEEEEecccccCCCC
Confidence 99999999876665443
No 37
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.60 E-value=5.4e-15 Score=92.69 Aligned_cols=64 Identities=34% Similarity=0.555 Sum_probs=60.6
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. ++++.++.+++++|||||+|.++++|++|+ .|||..++|
T Consensus 23 l~~~F~~~G~i~~---------------------------v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g 74 (89)
T 3ucg_A 23 LEAHFHGCGSVNR---------------------------VTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG 74 (89)
T ss_dssp HHHHHGGGCCEEE---------------------------EEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETT
T ss_pred HHHHHHhCCCEEE---------------------------EEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECC
Confidence 7899999999999 999999989999999999999999999999 899999999
Q ss_pred eeEEEEeccCCC
Q 033751 82 RVIFVDNVRPSR 93 (112)
Q Consensus 82 ~~i~V~~a~~~~ 93 (112)
+.|.|+++++..
T Consensus 75 ~~l~V~~a~~~~ 86 (89)
T 3ucg_A 75 RQIKVIPKRTNR 86 (89)
T ss_dssp EECEEEETTTTS
T ss_pred cEEEEEEccCCC
Confidence 999999997643
No 38
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.59 E-value=5.3e-15 Score=97.93 Aligned_cols=65 Identities=42% Similarity=0.789 Sum_probs=59.1
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||+|.. ++|++|+ +.++|||||+|.++++|++||..|||..++|
T Consensus 22 L~~~F~~~G~v~~---------------------------v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g 72 (115)
T 4f25_A 22 LYDTFSAFGNILS---------------------------CKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLND 72 (115)
T ss_dssp HHHHHGGGSCEEE---------------------------EEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred HHHHHhccCCEEE---------------------------EEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECC
Confidence 7899999999999 9999996 4589999999999999999999999999999
Q ss_pred eeEEEEeccCCCCC
Q 033751 82 RVIFVDNVRPSRRY 95 (112)
Q Consensus 82 ~~i~V~~a~~~~~~ 95 (112)
+.|.|+++.++..+
T Consensus 73 ~~i~V~~a~~~~~~ 86 (115)
T 4f25_A 73 RKVFVGRFKSRKER 86 (115)
T ss_dssp EECEEEESSCCCC-
T ss_pred EEEEEEECCCcccc
Confidence 99999999765443
No 39
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=4e-15 Score=95.28 Aligned_cols=66 Identities=27% Similarity=0.442 Sum_probs=61.9
Q ss_pred HHHHhhccCcce-ecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 2 LADAFSQFGQVT-EDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 2 l~~~f~~~G~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
|+++|++||+|. . +++++|+.+++++|||||+|.++++|++|+..|||..++
T Consensus 26 l~~~F~~~G~i~~~---------------------------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 78 (99)
T 2div_A 26 ISRAFATMGETVMS---------------------------VKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLP 78 (99)
T ss_dssp HHHHHHHTTCCCCE---------------------------EEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEES
T ss_pred HHHHHHHhCCcceE---------------------------EEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccC
Confidence 789999999999 9 999999999999999999999999999999999999999
Q ss_pred Cee----EEEEeccCCCC
Q 033751 81 GRV----IFVDNVRPSRR 94 (112)
Q Consensus 81 g~~----i~V~~a~~~~~ 94 (112)
|+. |+|+++++...
T Consensus 79 g~~~~~~l~v~~a~~~~~ 96 (99)
T 2div_A 79 GATPAKRFKLNYATYSGP 96 (99)
T ss_dssp SCSSCEECCEEETTCCSS
T ss_pred CCCcceeEEEeecCCCCC
Confidence 999 99999976543
No 40
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.4e-15 Score=94.83 Aligned_cols=64 Identities=16% Similarity=0.199 Sum_probs=58.3
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||+|.+ ++|+.|+.+ +|||||+|.++++|++|+..|||..++|
T Consensus 30 l~~~F~~~G~v~~---------------------------v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~g 79 (96)
T 2dgx_A 30 LQEAFARHGKVKS---------------------------VELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGS 79 (96)
T ss_dssp HHHHHHHHSCEEE---------------------------EEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred HHHhccccCcEEE---------------------------EEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4499999999999 999999865 8999999999999999999999999999
Q ss_pred eeEEEEeccCCCCC
Q 033751 82 RVIFVDNVRPSRRY 95 (112)
Q Consensus 82 ~~i~V~~a~~~~~~ 95 (112)
+.|+|+++++....
T Consensus 80 r~l~V~~a~~~~~~ 93 (96)
T 2dgx_A 80 KKILVSLATGASGP 93 (96)
T ss_dssp EEEEEEECCCSSCC
T ss_pred eEEEEEEcCCCCCC
Confidence 99999999876543
No 41
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=4.8e-15 Score=93.93 Aligned_cols=62 Identities=35% Similarity=0.529 Sum_probs=59.5
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||+|.. +.++.++.+++++|||||+|.++++|++|+..|||..++|
T Consensus 33 l~~~f~~~G~v~~---------------------------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 85 (94)
T 2e5h_A 33 LYRIFSKYGKVVK---------------------------VTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG 85 (94)
T ss_dssp HHHHTTTTSCEEE---------------------------EEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT
T ss_pred HHHHHHhcCCeEE---------------------------EEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 7899999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEecc
Q 033751 82 RVIFVDNVR 90 (112)
Q Consensus 82 ~~i~V~~a~ 90 (112)
+.|.|++|+
T Consensus 86 ~~l~v~~ak 94 (94)
T 2e5h_A 86 RVIKASIAI 94 (94)
T ss_dssp EEEEEEECC
T ss_pred cEEEEEecC
Confidence 999999874
No 42
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=6.6e-15 Score=96.98 Aligned_cols=69 Identities=29% Similarity=0.560 Sum_probs=63.6
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. ++|+.++.+++++|||||+|.++++|++|+.. ++..++|
T Consensus 44 l~~~F~~~G~i~~---------------------------v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g 95 (116)
T 1x4b_A 44 LRNYYEQWGKLTD---------------------------CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDG 95 (116)
T ss_dssp HHHHHTSSCCCSE---------------------------EEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETT
T ss_pred HHHHHHhcCCEEE---------------------------EEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECC
Confidence 7899999999999 99999999999999999999999999999997 9999999
Q ss_pred eeEEEEeccCCCCCCCC
Q 033751 82 RVIFVDNVRPSRRYNTD 98 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~~~ 98 (112)
+.|.|+++.++....++
T Consensus 96 ~~l~V~~a~~~~~~~~~ 112 (116)
T 1x4b_A 96 RVVEPKRAVAREESGSG 112 (116)
T ss_dssp EEEEEECCSSCCCCCCS
T ss_pred EEEEEEECCCCccCCCC
Confidence 99999999877665443
No 43
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=6.2e-16 Score=99.74 Aligned_cols=67 Identities=31% Similarity=0.641 Sum_probs=62.8
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. ++++.++.+++++|||||+|.+.++|++|+..|||..++|
T Consensus 25 l~~~f~~~G~i~~---------------------------~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 77 (104)
T 1p1t_A 25 LKDIFSEVGPVVS---------------------------FRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSG 77 (104)
T ss_dssp HHHHHHTTSCCSE---------------------------EEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSS
T ss_pred HHHHHHhcCCeeE---------------------------EEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 7899999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEeccCCCCC
Q 033751 82 RVIFVDNVRPSRRY 95 (112)
Q Consensus 82 ~~i~V~~a~~~~~~ 95 (112)
+.|.|+++.+....
T Consensus 78 ~~l~v~~a~~~~~~ 91 (104)
T 1p1t_A 78 RALRVDNAASEKNK 91 (104)
T ss_dssp SCBEEEETTCTTHH
T ss_pred cEEEEEeCCCccch
Confidence 99999999876543
No 44
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.59 E-value=7.8e-15 Score=94.81 Aligned_cols=68 Identities=25% Similarity=0.413 Sum_probs=62.5
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. ++|+.++ +++++|||||+|.+.++|++|+..|||..+.|
T Consensus 32 l~~~F~~~G~i~~---------------------------v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 83 (105)
T 2dnh_A 32 VLRLFQPFGVIDE---------------------------CTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP 83 (105)
T ss_dssp HHHHHTTTSCEEE---------------------------EEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred HHHHHHhcCCeEE---------------------------EEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 7899999999999 9999998 89999999999999999999999999999998
Q ss_pred ---eeEEEEeccCCCCCCC
Q 033751 82 ---RVIFVDNVRPSRRYNT 97 (112)
Q Consensus 82 ---~~i~V~~a~~~~~~~~ 97 (112)
+.|.|+++++...+.+
T Consensus 84 g~~~~l~V~~a~~~~~~~~ 102 (105)
T 2dnh_A 84 GASSSLVVKFADTDKESGP 102 (105)
T ss_dssp TCSSCCEEEESCSSCCCSC
T ss_pred CCCccEEEEECccCcccCC
Confidence 9999999987665443
No 45
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.58 E-value=3.9e-15 Score=92.99 Aligned_cols=66 Identities=32% Similarity=0.577 Sum_probs=60.9
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCC-cccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNR-SKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~-~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
|+++|++||.|.. +.++.++.++. ++|||||+|.++++|++|+..|||..++
T Consensus 21 l~~~F~~~G~i~~---------------------------~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (88)
T 4a8x_A 21 IMEIFSTYGKIKM---------------------------IDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID 73 (88)
T ss_dssp HHHHHHTTSCEEE---------------------------EECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred HHHHHHhCCCEEE---------------------------EEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeEC
Confidence 7899999999999 99999987766 8999999999999999999999999999
Q ss_pred CeeEEEEeccCCCC
Q 033751 81 GRVIFVDNVRPSRR 94 (112)
Q Consensus 81 g~~i~V~~a~~~~~ 94 (112)
|+.|.|+++.+...
T Consensus 74 g~~l~v~~a~~~~~ 87 (88)
T 4a8x_A 74 GQEITATAVLAPWP 87 (88)
T ss_dssp TEECEEEEECCCCC
T ss_pred CeEEEEEECCCCCC
Confidence 99999999976543
No 46
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.58 E-value=1e-14 Score=100.66 Aligned_cols=66 Identities=26% Similarity=0.430 Sum_probs=62.5
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. |.|+.++.+++++|||||+|.++++|++||..||+..++|
T Consensus 56 l~~~F~~~G~i~~---------------------------v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 108 (156)
T 1h2v_Z 56 IYELFSKSGDIKK---------------------------IIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD 108 (156)
T ss_dssp HHHHHGGGSCEEE---------------------------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT
T ss_pred HHHHHHhcCCeEE---------------------------EEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 7899999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEeccCCCC
Q 033751 82 RVIFVDNVRPSRR 94 (112)
Q Consensus 82 ~~i~V~~a~~~~~ 94 (112)
+.|.|+++++...
T Consensus 109 ~~l~V~~a~~~~~ 121 (156)
T 1h2v_Z 109 RIIRTDWDAGFKE 121 (156)
T ss_dssp EECEEEEESCCCT
T ss_pred eEEEEEECCCCCC
Confidence 9999999976544
No 47
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=4.4e-15 Score=96.11 Aligned_cols=68 Identities=34% Similarity=0.539 Sum_probs=62.8
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. ++|+.++.+++++|||||+|.++++|++|+.. |+..++|
T Consensus 33 l~~~F~~~G~v~~---------------------------v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g 84 (105)
T 2dh8_A 33 LRSYFSQYGEVVD---------------------------CVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG 84 (105)
T ss_dssp HHHHHHTTSCEEE---------------------------EEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT
T ss_pred HHHHHHhcCCeEE---------------------------EEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC
Confidence 7899999999999 99999999999999999999999999999998 9999999
Q ss_pred eeEEEEeccCCCCCCC
Q 033751 82 RVIFVDNVRPSRRYNT 97 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~~ 97 (112)
+.|.|+++.+......
T Consensus 85 ~~l~V~~a~~~~~~~~ 100 (105)
T 2dh8_A 85 RNIDPKPCTPRGMQPS 100 (105)
T ss_dssp EEEBCCCSCCSSCCTT
T ss_pred EEEEEEEccCCCCCCC
Confidence 9999999987665443
No 48
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.58 E-value=5.1e-15 Score=101.94 Aligned_cols=67 Identities=31% Similarity=0.575 Sum_probs=63.1
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. ++|+.|+.+++++|||||+|.+.++|++|+..|||..++|
T Consensus 87 l~~~F~~~G~v~~---------------------------~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 139 (158)
T 2kn4_A 87 LRRVFEKYGRVGD---------------------------VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG 139 (158)
T ss_dssp HHHHHHHHSCEEE---------------------------EECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSS
T ss_pred HHHHHHhcCCeEE---------------------------EEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 7899999999999 9999999899999999999999999999999999999999
Q ss_pred eeEEEEeccCCCCC
Q 033751 82 RVIFVDNVRPSRRY 95 (112)
Q Consensus 82 ~~i~V~~a~~~~~~ 95 (112)
+.|.|+++++....
T Consensus 140 ~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 140 RELRVQMARYGRPP 153 (158)
T ss_dssp SEEEEEEECCSSCC
T ss_pred eEEEEEECCCCCCC
Confidence 99999999876544
No 49
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.57 E-value=4.1e-15 Score=99.14 Aligned_cols=67 Identities=30% Similarity=0.456 Sum_probs=62.6
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +.|+.++.++.++|||||+|.++++|++|+..|||..++|
T Consensus 39 l~~~F~~~G~i~~---------------------------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 91 (126)
T 3ex7_B 39 IHDKFAEYGEIKN---------------------------IHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG 91 (126)
T ss_dssp HHHHHHTTSCEEE---------------------------EECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred HHHHHHhcCCeEE---------------------------EEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 7899999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEeccCCCCC
Q 033751 82 RVIFVDNVRPSRRY 95 (112)
Q Consensus 82 ~~i~V~~a~~~~~~ 95 (112)
+.|.|+++.+....
T Consensus 92 ~~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 92 QPISVDWCFVRGPP 105 (126)
T ss_dssp SBCEEEESEESSSC
T ss_pred eEEEEEEecCCCCC
Confidence 99999999765544
No 50
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.57 E-value=6e-15 Score=96.92 Aligned_cols=65 Identities=42% Similarity=0.687 Sum_probs=61.8
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +++++++.+++++|||||+|.+.++|++|+..|||..++|
T Consensus 43 l~~~F~~~G~i~~---------------------------v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g 95 (108)
T 2jrs_A 43 LRGIFEPFGRIES---------------------------IQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG 95 (108)
T ss_dssp HHHHHTTTSCEEE---------------------------EEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred HHHHHHhcCCeEE---------------------------EEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 7899999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEeccCCC
Q 033751 82 RVIFVDNVRPSR 93 (112)
Q Consensus 82 ~~i~V~~a~~~~ 93 (112)
+.|.|++++++.
T Consensus 96 ~~l~V~~a~~k~ 107 (108)
T 2jrs_A 96 RPMKVGHVTERT 107 (108)
T ss_dssp SCCEEECSCSSC
T ss_pred EEEEEEEcccCC
Confidence 999999998653
No 51
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.3e-14 Score=95.41 Aligned_cols=65 Identities=22% Similarity=0.335 Sum_probs=58.9
Q ss_pred HHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCC---CcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 4 DAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKN---RSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 4 ~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~---~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
++|++||+|.+ +.|++++.++ +++|||||+|.++++|++|+..|||..++
T Consensus 37 ~~F~~~G~i~~---------------------------v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 37 EYFGKFGKIHK---------------------------VVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp TTTTTTSCEEE---------------------------EEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred HHhhccCCEEE---------------------------EEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 89999999999 9999998754 56699999999999999999999999999
Q ss_pred CeeEEEEeccCCCCC
Q 033751 81 GRVIFVDNVRPSRRY 95 (112)
Q Consensus 81 g~~i~V~~a~~~~~~ 95 (112)
|+.|.|+++.++...
T Consensus 90 gr~l~V~~a~~k~~~ 104 (111)
T 2cpi_A 90 GRTLKASLGTTKYCS 104 (111)
T ss_dssp TEEEEEESCCCCSCS
T ss_pred CEEEEEEeccccccc
Confidence 999999999876543
No 52
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2e-14 Score=92.75 Aligned_cols=67 Identities=25% Similarity=0.429 Sum_probs=60.2
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. ++|+.++. .++|||||+|.++++|++|+..|||..++|
T Consensus 32 l~~~F~~~G~i~~---------------------------v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 82 (103)
T 2cqi_A 32 ILQLFSQIGPCKS---------------------------CKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILG 82 (103)
T ss_dssp HHHHHHHHSCEEE---------------------------EEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred HHHHHHhcCCEeE---------------------------EEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCC
Confidence 7899999999999 99999964 378999999999999999999999999999
Q ss_pred eeEEEEeccCCCCCCC
Q 033751 82 RVIFVDNVRPSRRYNT 97 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~~ 97 (112)
+.|.|+++++......
T Consensus 83 ~~l~V~~a~~~~~~~~ 98 (103)
T 2cqi_A 83 KEVKVNWATTPSSQKS 98 (103)
T ss_dssp EEEEEEECCCTTCCCC
T ss_pred CeEEEEECCCCccccc
Confidence 9999999987655443
No 53
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.57 E-value=1.3e-14 Score=95.57 Aligned_cols=63 Identities=24% Similarity=0.359 Sum_probs=58.7
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCC-CCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGK-NRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t-~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
|+++|++||+|.+ +.|++++.+ ++++|++||+|.++++|++|+..|||+.++
T Consensus 30 l~~~f~~~G~V~~---------------------------v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~ 82 (105)
T 2pe8_A 30 TKEECEKYGKVGK---------------------------CVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFG 82 (105)
T ss_dssp HHHHGGGGSCEEE---------------------------EEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred HHHHHHhcCCEEE---------------------------EEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 7889999999999 999998754 689999999999999999999999999999
Q ss_pred CeeEEEEeccC
Q 033751 81 GRVIFVDNVRP 91 (112)
Q Consensus 81 g~~i~V~~a~~ 91 (112)
|+.|.|.++.+
T Consensus 83 Gr~i~v~~a~~ 93 (105)
T 2pe8_A 83 GRVVKACFYNL 93 (105)
T ss_dssp TEECEEEECCH
T ss_pred CcEEEEEEcCH
Confidence 99999999864
No 54
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=6.5e-15 Score=95.03 Aligned_cols=68 Identities=25% Similarity=0.502 Sum_probs=62.6
Q ss_pred HHHHhhc-cCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCce-e
Q 033751 2 LADAFSQ-FGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKL-L 79 (112)
Q Consensus 2 l~~~f~~-~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~-l 79 (112)
|+++|++ ||.|.. ++|+.|+ +++++|||||+|.+.++|++|+..|||.. +
T Consensus 26 l~~~F~~~~G~v~~---------------------------v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 77 (104)
T 2dhg_A 26 LYEFFVKVYPSCRG---------------------------GKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGL 77 (104)
T ss_dssp HHHHHHHHCTTEEE---------------------------EEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSS
T ss_pred HHHHHHHhCCCeEE---------------------------EEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCccc
Confidence 7899999 999999 9999998 99999999999999999999999999999 9
Q ss_pred CCeeEEEEeccCCCCCCC
Q 033751 80 DGRVIFVDNVRPSRRYNT 97 (112)
Q Consensus 80 ~g~~i~V~~a~~~~~~~~ 97 (112)
+|+.|.|+++.+......
T Consensus 78 ~g~~l~v~~a~~~~~~~~ 95 (104)
T 2dhg_A 78 GSKPVRLSVAIPKASRVK 95 (104)
T ss_dssp SSSCCCCCBCCCCCSCCC
T ss_pred CCEeEEEEEccCCCcCCC
Confidence 999999999976655433
No 55
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.57 E-value=6e-15 Score=99.99 Aligned_cols=66 Identities=35% Similarity=0.624 Sum_probs=62.5
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||+|.. +++++|+.+++++|||||+|.+.++|++|+..|||..++|
T Consensus 63 L~~~F~~~G~I~~---------------------------v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g 115 (129)
T 2kxn_B 63 LREVFSKYGPIAD---------------------------VSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG 115 (129)
T ss_dssp HHHHHTTTSCEEE---------------------------EEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred HHHHHHhcCCeEE---------------------------EEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 7899999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEeccCCCC
Q 033751 82 RVIFVDNVRPSRR 94 (112)
Q Consensus 82 ~~i~V~~a~~~~~ 94 (112)
+.|.|+++.+.++
T Consensus 116 ~~l~V~~a~~~~p 128 (129)
T 2kxn_B 116 RRIRVDFSITKRP 128 (129)
T ss_dssp SCCEESCCSSSSC
T ss_pred EEEEEEEecCCCC
Confidence 9999999987653
No 56
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.7e-14 Score=92.11 Aligned_cols=67 Identities=34% Similarity=0.658 Sum_probs=60.7
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. ++|+.++. .++|||||+|.+.++|++|+..|||..++|
T Consensus 32 l~~~f~~~G~v~~---------------------------v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 82 (103)
T 2cq3_A 32 LRQMFGQFGKILD---------------------------VEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEG 82 (103)
T ss_dssp HHHHGGGTSCEEE---------------------------EEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred HHHHHHhcCCeEE---------------------------EEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 7899999999999 99999863 389999999999999999999999999999
Q ss_pred eeEEEEeccCCCCCCC
Q 033751 82 RVIFVDNVRPSRRYNT 97 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~~ 97 (112)
+.|.|+++.+......
T Consensus 83 ~~l~v~~a~~~~~~~~ 98 (103)
T 2cq3_A 83 RKIEVNNATARVMTNS 98 (103)
T ss_dssp EECEEEECCSSCCCCC
T ss_pred EEEEEEEcccCCCCCC
Confidence 9999999987665544
No 57
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.57 E-value=1.8e-14 Score=95.75 Aligned_cols=65 Identities=31% Similarity=0.504 Sum_probs=61.0
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. ++++.++.+++++|||||+|.+.++|++|+ .|||..++|
T Consensus 53 l~~~F~~~G~i~~---------------------------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 104 (124)
T 2jwn_A 53 LEAHFSSCGSINR---------------------------ITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRG 104 (124)
T ss_dssp HHHHHHTTSCEEE---------------------------EEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETT
T ss_pred HHHHHHhcCCEEE---------------------------EEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECC
Confidence 7899999999999 999999989999999999999999999999 799999999
Q ss_pred eeEEEEeccCCCC
Q 033751 82 RVIFVDNVRPSRR 94 (112)
Q Consensus 82 ~~i~V~~a~~~~~ 94 (112)
+.|.|+++++...
T Consensus 105 ~~l~V~~a~~~~~ 117 (124)
T 2jwn_A 105 RTIKVLPKRTNMP 117 (124)
T ss_dssp EECEEEESSCCCS
T ss_pred eEEEEEECCCCCC
Confidence 9999999976544
No 58
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.57 E-value=2.7e-15 Score=101.30 Aligned_cols=68 Identities=24% Similarity=0.433 Sum_probs=62.3
Q ss_pred HHHHhhccCcc--eecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCc--
Q 033751 2 LADAFSQFGQV--TEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGK-- 77 (112)
Q Consensus 2 l~~~f~~~G~i--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~-- 77 (112)
|+++|++||.| .. ++|++|+.+++++|||||+|.+. +|.+|+..|||.
T Consensus 40 L~~~F~~~G~v~~~~---------------------------v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~ 91 (131)
T 2m2b_A 40 ILGALAPYAVLSSSN---------------------------VRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHP 91 (131)
T ss_dssp HHHHHGGGCCCCTTT---------------------------EECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCC
T ss_pred HHHHHHHhCCcceee---------------------------EEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCC
Confidence 78999999999 55 89999999999999999999999 999999999999
Q ss_pred --eeCCeeEEEEeccCCCCCCC
Q 033751 78 --LLDGRVIFVDNVRPSRRYNT 97 (112)
Q Consensus 78 --~l~g~~i~V~~a~~~~~~~~ 97 (112)
.++|+.|.|+++++..+...
T Consensus 92 ~~~~~gr~l~V~~a~~~~~~~~ 113 (131)
T 2m2b_A 92 PLTIDGKTINVEFAKGSKRDMA 113 (131)
T ss_dssp SCCGGGCCCCCEECCCSCCCCC
T ss_pred CccCCCEEEEEEECCCCCCCCC
Confidence 99999999999987765543
No 59
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=7.5e-15 Score=93.82 Aligned_cols=64 Identities=19% Similarity=0.273 Sum_probs=60.1
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +.++.++.+++++|||||+|.++++|++|+..|||..++|
T Consensus 32 l~~~F~~~G~v~~---------------------------~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 84 (98)
T 2cqp_A 32 ILDFFYGYQVIPG---------------------------SVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS 84 (98)
T ss_dssp HHHHTTTSCCCTT---------------------------TCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETT
T ss_pred HHHHHHHcCCccc---------------------------eEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 7899999999988 8888898899999999999999999999999999999999
Q ss_pred eeEEEEeccCC
Q 033751 82 RVIFVDNVRPS 92 (112)
Q Consensus 82 ~~i~V~~a~~~ 92 (112)
+.|.|+++...
T Consensus 85 ~~l~V~~a~~~ 95 (98)
T 2cqp_A 85 RKVKLVLGSGP 95 (98)
T ss_dssp EECEEEESSCS
T ss_pred eEEEEEEcCCC
Confidence 99999998754
No 60
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.6e-14 Score=94.06 Aligned_cols=64 Identities=34% Similarity=0.593 Sum_probs=60.2
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. ++|++++.+++++|||||+|.++++|++|+..+++ .++|
T Consensus 34 l~~~F~~~G~i~~---------------------------v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g 85 (116)
T 2cqd_A 34 LRKYFEGFGDIEE---------------------------AVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG 85 (116)
T ss_dssp HHHHHHTTSCEEE---------------------------EEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT
T ss_pred HHHHHHhCCCeeE---------------------------EEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCC
Confidence 7899999999999 99999999999999999999999999999999998 8999
Q ss_pred eeEEEEeccCCC
Q 033751 82 RVIFVDNVRPSR 93 (112)
Q Consensus 82 ~~i~V~~a~~~~ 93 (112)
+.|.|+++.+..
T Consensus 86 ~~l~V~~a~~~~ 97 (116)
T 2cqd_A 86 RKANVNLAYLGA 97 (116)
T ss_dssp EECEEEESTTTC
T ss_pred EEEEEEEcccCC
Confidence 999999997543
No 61
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.56 E-value=1.7e-14 Score=93.49 Aligned_cols=61 Identities=33% Similarity=0.553 Sum_probs=58.8
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +.|+.++ +++++|||||+|.++++|++|+..|||..++|
T Consensus 46 l~~~F~~~G~i~~---------------------------v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 97 (107)
T 3ulh_A 46 IQELFAEFGTLKK---------------------------AAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDG 97 (107)
T ss_dssp HHHHHHTTSCEEE---------------------------EEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred HHHHHHhcCCeEE---------------------------EEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 7899999999999 9999998 99999999999999999999999999999999
Q ss_pred eeEEEEecc
Q 033751 82 RVIFVDNVR 90 (112)
Q Consensus 82 ~~i~V~~a~ 90 (112)
+.|.|+++.
T Consensus 98 ~~l~V~~a~ 106 (107)
T 3ulh_A 98 RPMNIQLVT 106 (107)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEeC
Confidence 999999985
No 62
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.56 E-value=9.9e-15 Score=102.08 Aligned_cols=63 Identities=27% Similarity=0.437 Sum_probs=60.6
Q ss_pred HHHHhhccC--cceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCcee
Q 033751 2 LADAFSQFG--QVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 79 (112)
Q Consensus 2 l~~~f~~~G--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l 79 (112)
|+++|++|| .|.+ ++|+.|+.+|+++|||||+|.+.++|++||..|||..+
T Consensus 72 L~~~F~~~G~i~v~~---------------------------v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~ 124 (156)
T 3n9u_C 72 LIQVIRSIGVYDVVE---------------------------LKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVL 124 (156)
T ss_dssp HHHHHHHTTCCCEEE---------------------------EEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEE
T ss_pred HHHHHHHHCCccEEE---------------------------EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 789999999 8999 99999999999999999999999999999999999999
Q ss_pred CCeeEEEEeccC
Q 033751 80 DGRVIFVDNVRP 91 (112)
Q Consensus 80 ~g~~i~V~~a~~ 91 (112)
+|+.|.|+++.+
T Consensus 125 ~Gr~l~V~~a~~ 136 (156)
T 3n9u_C 125 NGEKVDVRPATR 136 (156)
T ss_dssp TTEECEEEECCH
T ss_pred CCeEeEEEEcCC
Confidence 999999999864
No 63
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=4.1e-14 Score=91.22 Aligned_cols=67 Identities=27% Similarity=0.455 Sum_probs=61.0
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||+|.. ++|+.++.+++++|||||+|.+.++|++|+. ++..++|
T Consensus 32 l~~~F~~~G~i~~---------------------------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g 82 (103)
T 2cqg_A 32 LKEYFSTFGEVLM---------------------------VQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDG 82 (103)
T ss_dssp HHHHHGGGSCEEE---------------------------EEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETT
T ss_pred HHHHHHhcCCeEE---------------------------EEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCC
Confidence 7899999999999 9999999999999999999999999999998 4789999
Q ss_pred eeEEEEeccCCCCCCC
Q 033751 82 RVIFVDNVRPSRRYNT 97 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~~ 97 (112)
+.|.|+++.++.....
T Consensus 83 ~~l~v~~a~~~~~~~~ 98 (103)
T 2cqg_A 83 RWCDCKLPNSKQSQDS 98 (103)
T ss_dssp EEEEEECCCTTCCCCC
T ss_pred eEEEEEecCCCCcCCC
Confidence 9999999987655443
No 64
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.55 E-value=1.9e-14 Score=91.33 Aligned_cols=62 Identities=35% Similarity=0.501 Sum_probs=58.8
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||+|.. ++|+.++. ++++|||||+|.++++|++|+..|||..++|
T Consensus 33 l~~~F~~~G~i~~---------------------------v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (95)
T 2ywk_A 33 LYELFLQAGPLTK---------------------------VTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYG 84 (95)
T ss_dssp HHHHHGGGSCEEE---------------------------EEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETT
T ss_pred HHHHHHhcCCEEE---------------------------EEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 7899999999999 99999985 9999999999999999999999999999999
Q ss_pred eeEEEEeccC
Q 033751 82 RVIFVDNVRP 91 (112)
Q Consensus 82 ~~i~V~~a~~ 91 (112)
+.|.|++++.
T Consensus 85 ~~l~V~~a~~ 94 (95)
T 2ywk_A 85 RPINVSGPSS 94 (95)
T ss_dssp EECEEECCCC
T ss_pred CEEEEEEcCC
Confidence 9999999864
No 65
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.55 E-value=1e-14 Score=92.51 Aligned_cols=63 Identities=19% Similarity=0.330 Sum_probs=59.1
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +.++.++.+++++|||||+|.++++|++|+..|||..++|
T Consensus 32 l~~~F~~~G~i~~---------------------------~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 84 (95)
T 2ek1_A 32 ILDFFYGYQVIPG---------------------------SVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS 84 (95)
T ss_dssp HHHHTTTSCBCTT---------------------------CCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred HHHHHHhcCCccc---------------------------eEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 7899999999998 8889999899999999999999999999999999999999
Q ss_pred eeEEEEeccC
Q 033751 82 RVIFVDNVRP 91 (112)
Q Consensus 82 ~~i~V~~a~~ 91 (112)
+.|.|+++.+
T Consensus 85 r~l~v~~a~s 94 (95)
T 2ek1_A 85 RKVKLSGPSS 94 (95)
T ss_dssp EECEEECCC-
T ss_pred cEEEEEeccC
Confidence 9999998864
No 66
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.5e-15 Score=98.77 Aligned_cols=65 Identities=34% Similarity=0.545 Sum_probs=61.0
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. ++|+.|+.+++++|||||+|.+.++|++|+ .|||..++|
T Consensus 42 l~~~F~~~G~i~~---------------------------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 93 (114)
T 2cq4_A 42 LEDFFSAVGKVRD---------------------------VRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLG 93 (114)
T ss_dssp HHHHHTTTSCEEE---------------------------EEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETT
T ss_pred HHHHHHhCCCEeE---------------------------EEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCC
Confidence 7899999999999 999999999999999999999999999999 899999999
Q ss_pred eeEEEEeccCCCC
Q 033751 82 RVIFVDNVRPSRR 94 (112)
Q Consensus 82 ~~i~V~~a~~~~~ 94 (112)
+.|.|+++++...
T Consensus 94 ~~l~V~~a~~~~~ 106 (114)
T 2cq4_A 94 VPIIVQASQAEKN 106 (114)
T ss_dssp EEEEEEEHHHHHH
T ss_pred eEEEEEecCCCcc
Confidence 9999999976443
No 67
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.54 E-value=3.5e-14 Score=94.58 Aligned_cols=66 Identities=29% Similarity=0.465 Sum_probs=61.7
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. ++++.++ +++++|||||+|.+.++|++|+..|||..++|
T Consensus 52 l~~~F~~~G~v~~---------------------------v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 103 (124)
T 2kt5_A 52 IQELFAEFGTLKK---------------------------AAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDG 103 (124)
T ss_dssp HHHHHHTTSCCSE---------------------------EEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSS
T ss_pred HHHHHHhcCCeeE---------------------------EEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 7899999999999 9999998 99999999999999999999999999999999
Q ss_pred eeEEEEeccCCCCC
Q 033751 82 RVIFVDNVRPSRRY 95 (112)
Q Consensus 82 ~~i~V~~a~~~~~~ 95 (112)
+.|.|++|.+....
T Consensus 104 ~~l~V~~a~~~~~~ 117 (124)
T 2kt5_A 104 RPMDIQLVASQIDL 117 (124)
T ss_dssp CEEEEEEECCTTCC
T ss_pred cEEEEEEeCCCCCC
Confidence 99999999765443
No 68
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.54 E-value=2.1e-14 Score=100.25 Aligned_cols=68 Identities=25% Similarity=0.423 Sum_probs=62.1
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +.|+.++.++.++|||||+|.+.++|++||..|||..|.|
T Consensus 89 L~~~F~~~G~i~~---------------------------v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 141 (165)
T 1rk8_A 89 IQEKFCDYGEIKN---------------------------IHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG 141 (165)
T ss_dssp HHHHHGGGSCEEE---------------------------EEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred HHHHhhcCCCEEE---------------------------EEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 7899999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEeccCCCCCC
Q 033751 82 RVIFVDNVRPSRRYN 96 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~ 96 (112)
+.|.|.++.+.....
T Consensus 142 ~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 142 QTIQVDWCFVKGPKR 156 (165)
T ss_dssp EECEEEESEECC---
T ss_pred EEEEEEEecCCCCCC
Confidence 999999997655443
No 69
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.54 E-value=3.1e-15 Score=94.26 Aligned_cols=66 Identities=30% Similarity=0.616 Sum_probs=58.1
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||+|.. +.+++++.+++++|||||+|.+.+ |++|+..|||..++|
T Consensus 18 l~~~F~~~G~i~~---------------------------v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g 69 (90)
T 2ki2_A 18 VKELFSQFGKVFN---------------------------VKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMG 69 (90)
T ss_dssp HTTTHHHHTCCSE---------------------------EEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSS
T ss_pred HHHHHHhcCCEEE---------------------------EEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECC
Confidence 6789999999999 999999999999999999999999 999999999999999
Q ss_pred eeEEEEeccCCCCC
Q 033751 82 RVIFVDNVRPSRRY 95 (112)
Q Consensus 82 ~~i~V~~a~~~~~~ 95 (112)
+.|.|++|.+....
T Consensus 70 ~~l~V~~a~~~~~~ 83 (90)
T 2ki2_A 70 RTIRVTEANPKKSL 83 (90)
T ss_dssp SSCSEEEC------
T ss_pred eEEEEEEcCCCCCC
Confidence 99999999765443
No 70
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.4e-14 Score=93.05 Aligned_cols=67 Identities=18% Similarity=0.304 Sum_probs=61.0
Q ss_pred HHHHhhccCc-ceecceeeeccCCCCCcccccccccccceEEEEE-eeCCCCCcccEEEEEeCCHHHHHHHHHhhC--Cc
Q 033751 2 LADAFSQFGQ-VTEDLVYFYFKSQPLFPLHYFLISDSFLFAATII-MDKGKNRSKGYGYVTFSTEEEAQKALADMN--GK 77 (112)
Q Consensus 2 l~~~f~~~G~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~--g~ 77 (112)
|+++|++||. |.. +.++ .++.+++++|||||+|.++++|++|+..|| +.
T Consensus 25 l~~~f~~~G~~v~~---------------------------v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~ 77 (109)
T 2dis_A 25 ILEEIAKVTEGVLD---------------------------VIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRI 77 (109)
T ss_dssp HHHHHHHHSTTEEE---------------------------EECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCS
T ss_pred HHHHHHHhcCCceE---------------------------EEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCc
Confidence 7899999998 999 8888 888889999999999999999999999996 58
Q ss_pred eeCCeeEEEEeccCCCCC
Q 033751 78 LLDGRVIFVDNVRPSRRY 95 (112)
Q Consensus 78 ~l~g~~i~V~~a~~~~~~ 95 (112)
.++|+.|.|+++.+....
T Consensus 78 ~~~g~~l~V~~a~~~~~~ 95 (109)
T 2dis_A 78 QLWGHQIAVDWAEPEIDV 95 (109)
T ss_dssp CBTTBCCEEEESCSSCST
T ss_pred eecCCeEEEEEcCCCCCc
Confidence 999999999999876553
No 71
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.54 E-value=8.9e-15 Score=96.47 Aligned_cols=62 Identities=34% Similarity=0.543 Sum_probs=59.0
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. ++|++++.+++++|||||+|.+.++|++|+..|||..++|
T Consensus 57 l~~~F~~~G~i~~---------------------------~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 109 (118)
T 2khc_A 57 LASTFLPFGNVIS---------------------------AKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGT 109 (118)
T ss_dssp HHHHTTTSCEEEE---------------------------EEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETT
T ss_pred HHHHHHhcCCEEE---------------------------EEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 7899999999999 9999999899999999999999999999999999999999
Q ss_pred eeEEEEecc
Q 033751 82 RVIFVDNVR 90 (112)
Q Consensus 82 ~~i~V~~a~ 90 (112)
+.|+|++++
T Consensus 110 ~~l~V~~ak 118 (118)
T 2khc_A 110 KRLKVQLKK 118 (118)
T ss_dssp EECCEEEC-
T ss_pred EEEEEEecC
Confidence 999999874
No 72
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.53 E-value=6e-15 Score=90.04 Aligned_cols=60 Identities=28% Similarity=0.607 Sum_probs=57.0
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||+|.. +.++.++.+++++|||||+|.++++|++|+. +||..++|
T Consensus 16 l~~~F~~~G~i~~---------------------------v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g 67 (75)
T 2mss_A 16 VKHYFEQFGKVDD---------------------------AMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINN 67 (75)
T ss_dssp HHHHHHTTSCCSE---------------------------ECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSS
T ss_pred HHHHHHhcCCEEE---------------------------EEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECC
Confidence 7899999999999 9999999899999999999999999999998 99999999
Q ss_pred eeEEEEec
Q 033751 82 RVIFVDNV 89 (112)
Q Consensus 82 ~~i~V~~a 89 (112)
+.|.|++|
T Consensus 68 ~~l~v~~A 75 (75)
T 2mss_A 68 KMVECKKA 75 (75)
T ss_dssp CCCEEECC
T ss_pred EEEEEEeC
Confidence 99999875
No 73
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.53 E-value=2.7e-14 Score=90.10 Aligned_cols=65 Identities=40% Similarity=0.494 Sum_probs=59.7
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. ++++++ +++++|||||+|.+.++|++|+..|||..++|
T Consensus 25 l~~~f~~~G~v~~---------------------------~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g 75 (92)
T 2dgv_A 25 LKDKFNECGHVLY---------------------------ADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSG 75 (92)
T ss_dssp HHHHHHTTSCEEE---------------------------EEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTT
T ss_pred HHHHHHhcCCEEE---------------------------EEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 7899999999999 888875 78999999999999999999999999999999
Q ss_pred eeEEEEeccCCCCC
Q 033751 82 RVIFVDNVRPSRRY 95 (112)
Q Consensus 82 ~~i~V~~a~~~~~~ 95 (112)
+.|.|+++++....
T Consensus 76 ~~l~v~~a~~~~~~ 89 (92)
T 2dgv_A 76 REIDVRIDRNASGP 89 (92)
T ss_dssp BCCCCEECSCCSSC
T ss_pred cEEEEEEcCCCCCC
Confidence 99999999876543
No 74
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=7e-14 Score=91.09 Aligned_cols=67 Identities=19% Similarity=0.376 Sum_probs=59.0
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +.|..+ +.++|||||+|.+.++|++|+..||+..++|
T Consensus 39 l~~~F~~~G~v~~---------------------------~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 88 (109)
T 1x4a_A 39 IEDVFYKYGAIRD---------------------------IDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG 88 (109)
T ss_dssp HHHHHGGGSCEEE---------------------------EEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred HHHHHHhcCCeEE---------------------------EEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 7899999999999 887544 5589999999999999999999999999999
Q ss_pred eeEEEEeccCCCCCCCC
Q 033751 82 RVIFVDNVRPSRRYNTD 98 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~~~ 98 (112)
+.|.|+++++.....++
T Consensus 89 ~~l~V~~a~~~~~~~~~ 105 (109)
T 1x4a_A 89 YRLRVEFPRSGRGTGSG 105 (109)
T ss_dssp EECEEECCCCCCCCCCC
T ss_pred eEEEEEEcccCCCCCCC
Confidence 99999999876655443
No 75
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.53 E-value=2.2e-14 Score=94.18 Aligned_cols=60 Identities=27% Similarity=0.485 Sum_probs=55.5
Q ss_pred HHHHh-hccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 2 LADAF-SQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 2 l~~~f-~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
|+++| ++||+|.+ +.|+++. +++++|||||+|.++++|++|+..|||+.++
T Consensus 43 l~~~f~~~~G~V~~---------------------------v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~ 94 (104)
T 1jmt_A 43 VFTEMEEKYGEVEE---------------------------MNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFN 94 (104)
T ss_dssp HHHHHHHHTCCEEE---------------------------EEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred HHHHhhccCCceEE---------------------------EEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 55677 99999999 9999887 5799999999999999999999999999999
Q ss_pred CeeEEEEec
Q 033751 81 GRVIFVDNV 89 (112)
Q Consensus 81 g~~i~V~~a 89 (112)
|+.|.|+++
T Consensus 95 Gr~i~v~~s 103 (104)
T 1jmt_A 95 GQPIHAELS 103 (104)
T ss_dssp TEECCEEEC
T ss_pred CEEEEEEEc
Confidence 999999886
No 76
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.52 E-value=4.9e-14 Score=92.54 Aligned_cols=65 Identities=35% Similarity=0.558 Sum_probs=60.3
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. ++|++++.+++++|||||+|.+.++|++|+..+ +..++|
T Consensus 42 L~~~F~~~G~i~~---------------------------v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g 93 (109)
T 2rs2_A 42 LREYFGQFGEVKE---------------------------CLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDS 93 (109)
T ss_dssp HHHHHTTTSCEEE---------------------------EEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETT
T ss_pred HHHHHHccCCeEE---------------------------EEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCC
Confidence 7899999999999 999999999999999999999999999999976 589999
Q ss_pred eeEEEEeccCCCC
Q 033751 82 RVIFVDNVRPSRR 94 (112)
Q Consensus 82 ~~i~V~~a~~~~~ 94 (112)
+.|.|+++.++..
T Consensus 94 ~~l~V~~a~~~~~ 106 (109)
T 2rs2_A 94 KTIDPKVAFPRRA 106 (109)
T ss_dssp EEEEEEECCCCCC
T ss_pred EEEEEEEccCCCC
Confidence 9999999986544
No 77
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.52 E-value=4.7e-14 Score=88.25 Aligned_cols=60 Identities=38% Similarity=0.681 Sum_probs=56.6
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +++++++.+++++|||||+|.+.++|++|+. +++..++|
T Consensus 28 l~~~F~~~G~i~~---------------------------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g 79 (87)
T 3s7r_A 28 LKDYFTKFGEVVD---------------------------CTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDG 79 (87)
T ss_dssp HHHHHTTTSCEEE---------------------------EEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETT
T ss_pred HHHHHHhCCCEEE---------------------------EEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECC
Confidence 7899999999999 9999999999999999999999999999997 58899999
Q ss_pred eeEEEEec
Q 033751 82 RVIFVDNV 89 (112)
Q Consensus 82 ~~i~V~~a 89 (112)
+.|.|++|
T Consensus 80 ~~i~v~~A 87 (87)
T 3s7r_A 80 RVIDPKKA 87 (87)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 99999875
No 78
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.52 E-value=1.8e-14 Score=93.86 Aligned_cols=65 Identities=23% Similarity=0.455 Sum_probs=58.9
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +.|+ +.+|+++|||||+|.+.++|++|+..|||..++|
T Consensus 38 l~~~F~~~G~v~~---------------------------v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 38 IHKIFSKFGKITN---------------------------DFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp HHHHHGGGSCEEE---------------------------EECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred HHHHHhcCCCEEE---------------------------EEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 7899999999999 8887 3589999999999999999999999999999999
Q ss_pred e-eEEEEeccCCCCC
Q 033751 82 R-VIFVDNVRPSRRY 95 (112)
Q Consensus 82 ~-~i~V~~a~~~~~~ 95 (112)
+ .|.|+++....+.
T Consensus 89 ~~~l~V~~a~~~~k~ 103 (105)
T 2nlw_A 89 QHTFRVNLFTDFDKY 103 (105)
T ss_dssp TCEEEEECSCCCCCC
T ss_pred CceEEEEEcchHhhh
Confidence 8 9999999765543
No 79
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.51 E-value=1.3e-14 Score=93.58 Aligned_cols=63 Identities=24% Similarity=0.431 Sum_probs=58.9
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDK-GKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~-~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
|+++|++|| |.. ++|++++ .+++++|||||+|.+.++|++|+ .|||..++
T Consensus 36 l~~~F~~~G-i~~---------------------------v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~ 86 (100)
T 2j76_E 36 IKEFFRGLN-ISA---------------------------VRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG 86 (100)
T ss_dssp HHHHSCSSC-EEE---------------------------EECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBT
T ss_pred HHHHHHhcC-CeE---------------------------EEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEEC
Confidence 789999999 999 9999998 68999999999999999999999 89999999
Q ss_pred CeeEEEEeccCCC
Q 033751 81 GRVIFVDNVRPSR 93 (112)
Q Consensus 81 g~~i~V~~a~~~~ 93 (112)
|+.|.|++++++.
T Consensus 87 g~~l~V~~a~~~~ 99 (100)
T 2j76_E 87 NRRIRVDVADQAQ 99 (100)
T ss_dssp TBCCCCEECCCSC
T ss_pred CeEEEEEeccCCC
Confidence 9999999998754
No 80
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=8.6e-14 Score=89.42 Aligned_cols=57 Identities=32% Similarity=0.564 Sum_probs=52.3
Q ss_pred EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeeEEEEeccCCCCCCCC
Q 033751 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98 (112)
Q Consensus 42 ~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~~~~~~ 98 (112)
+.++.++.+++++|||||+|.++++|++|+..|||..++|+.|.|++++++...+++
T Consensus 42 ~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~~ 98 (102)
T 2fc8_A 42 ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGSG 98 (102)
T ss_dssp EEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCCSSSCS
T ss_pred EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCCCCCCC
Confidence 888999889999999999999999999999999999999999999999887665443
No 81
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.51 E-value=3.2e-14 Score=95.69 Aligned_cols=61 Identities=34% Similarity=0.575 Sum_probs=58.0
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +++++++.+++++|||||+|.++++|++|+..|||..++|
T Consensus 80 l~~~f~~~G~i~~---------------------------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 132 (140)
T 2ku7_A 80 LHAAFIPFGDITD---------------------------IQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG 132 (140)
T ss_dssp HHHHHGGGSCEEE---------------------------EECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT
T ss_pred HHHHHHhcCCEEE---------------------------EEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 7899999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEec
Q 033751 82 RVIFVDNV 89 (112)
Q Consensus 82 ~~i~V~~a 89 (112)
+.|+|++|
T Consensus 133 ~~l~v~~A 140 (140)
T 2ku7_A 133 RTIRVNLA 140 (140)
T ss_dssp EEEEEEC-
T ss_pred EEEEEEeC
Confidence 99999875
No 82
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=8.8e-14 Score=87.80 Aligned_cols=63 Identities=25% Similarity=0.417 Sum_probs=58.2
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|+.| .|.. ++|+++ .+++++|||||+|.+.++|++|+. |||..++|
T Consensus 27 l~~~F~~~-~i~~---------------------------v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g 76 (91)
T 2dgw_A 27 VMEFLAPL-KPVA---------------------------IRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGG 76 (91)
T ss_dssp HHHHHTTS-CCSE---------------------------EEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETT
T ss_pred HHHHHhhC-CceE---------------------------EEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCC
Confidence 78899999 8888 999999 689999999999999999999999 99999999
Q ss_pred eeEEEEeccCCCC
Q 033751 82 RVIFVDNVRPSRR 94 (112)
Q Consensus 82 ~~i~V~~a~~~~~ 94 (112)
+.|.|.++.++..
T Consensus 77 r~i~v~~a~~~~~ 89 (91)
T 2dgw_A 77 RYIEVFREKSGPS 89 (91)
T ss_dssp EEEEEEEESSCCC
T ss_pred cEEEEEECCcCCC
Confidence 9999999987643
No 83
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.50 E-value=5.3e-14 Score=92.58 Aligned_cols=63 Identities=24% Similarity=0.370 Sum_probs=57.8
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCC--CCcccEEEEEeCCHHHHHHHHHhhCCcee
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGK--NRSKGYGYVTFSTEEEAQKALADMNGKLL 79 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t--~~~rG~afV~f~~~~~a~~Ai~~l~g~~l 79 (112)
|+++|++||+|.+ +.|++++.+ ++++|++||+|.++++|++|+..|||+.+
T Consensus 32 l~~~f~k~G~V~~---------------------------v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f 84 (105)
T 3v4m_A 32 VRDECSKYGLVKS---------------------------IEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF 84 (105)
T ss_dssp HHHHHHTTSCEEE---------------------------EECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred HHHHHHccCCEEE---------------------------EEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 7889999999999 999998765 36899999999999999999999999999
Q ss_pred CCeeEEEEeccC
Q 033751 80 DGRVIFVDNVRP 91 (112)
Q Consensus 80 ~g~~i~V~~a~~ 91 (112)
+||.|.|.++..
T Consensus 85 ~GR~i~v~~~~~ 96 (105)
T 3v4m_A 85 ANRVVVTKYCDP 96 (105)
T ss_dssp TTEECEEEEECH
T ss_pred CCCEEEEEEeCH
Confidence 999999998753
No 84
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.50 E-value=2.3e-14 Score=97.69 Aligned_cols=67 Identities=31% Similarity=0.575 Sum_probs=62.7
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. ++|+.++.+++++|||||+|.+.++|++|+..|||..++|
T Consensus 64 L~~~F~~~G~i~~---------------------------v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g 116 (135)
T 2lea_A 64 LRRVFEKYGRVGD---------------------------VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG 116 (135)
T ss_dssp HHHHHGGGSCCSE---------------------------EECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSS
T ss_pred HHHHHHhcCCEEE---------------------------EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 7899999999999 9999999899999999999999999999999999999999
Q ss_pred eeEEEEeccCCCCC
Q 033751 82 RVIFVDNVRPSRRY 95 (112)
Q Consensus 82 ~~i~V~~a~~~~~~ 95 (112)
+.|.|+++++....
T Consensus 117 ~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 117 RELRVQMARYGRPP 130 (135)
T ss_dssp SCCEEEECCCCCCC
T ss_pred EEEEEEECCCCCCC
Confidence 99999999865443
No 85
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=2.3e-14 Score=87.53 Aligned_cols=60 Identities=35% Similarity=0.566 Sum_probs=57.4
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||+|.. +.++.++.+++++|||||+|.++++|++|+..++ ..++|
T Consensus 17 l~~~F~~~G~v~~---------------------------v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g 68 (77)
T 1uaw_A 17 LREYFGQFGEVKE---------------------------CLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDS 68 (77)
T ss_dssp HHHHHTTTSCCCC---------------------------EEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSS
T ss_pred HHHHHHhcCCEEE---------------------------EEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCC
Confidence 7899999999999 9999999899999999999999999999999999 99999
Q ss_pred eeEEEEec
Q 033751 82 RVIFVDNV 89 (112)
Q Consensus 82 ~~i~V~~a 89 (112)
+.|.|++|
T Consensus 69 ~~l~v~~a 76 (77)
T 1uaw_A 69 KTIDPKVA 76 (77)
T ss_dssp CCCEEEEC
T ss_pred EEEEEEec
Confidence 99999886
No 86
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.50 E-value=7.8e-14 Score=89.43 Aligned_cols=70 Identities=24% Similarity=0.302 Sum_probs=59.0
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|..... .....++++.|+.+++++|||||+|.+.++|++|+..|||..++|
T Consensus 30 l~~~F~~~G~i~~~~~-------------------~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 30 VADYFKQIGIIKTNKK-------------------TGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp HHHHHTTTSCBCEETT-------------------TTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred HHHHHHHhCCEeeccc-------------------cccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 7899999999875100 011126889998899999999999999999999999999999999
Q ss_pred eeEEEEecc
Q 033751 82 RVIFVDNVR 90 (112)
Q Consensus 82 ~~i~V~~a~ 90 (112)
+.|+|++|+
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999874
No 87
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.9e-14 Score=94.33 Aligned_cols=70 Identities=23% Similarity=0.397 Sum_probs=58.1
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +.+..+..+++++|||||+|.+.++|++|+..|||..++|
T Consensus 42 l~~~f~~~G~v~~---------------------------~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 94 (115)
T 2cpx_A 42 LVSLFARFQEKKG---------------------------PPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYG 94 (115)
T ss_dssp HHHHTHHHHHSSS---------------------------SCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSS
T ss_pred HHHHHHHhCCccc---------------------------eEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 7889999999965 3222222378999999999999999999999999999999
Q ss_pred eeEEEEeccCCCCCCCC
Q 033751 82 RVIFVDNVRPSRRYNTD 98 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~~~ 98 (112)
+.|.|+++++.....+.
T Consensus 95 ~~l~v~~a~~~~~~~~~ 111 (115)
T 2cpx_A 95 KILVIEFGKNKKQRSSG 111 (115)
T ss_dssp CBCEEEECCCCSCCCCC
T ss_pred cEEEEEEccCCCCCCCC
Confidence 99999999877665443
No 88
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=6.4e-15 Score=91.91 Aligned_cols=62 Identities=26% Similarity=0.500 Sum_probs=57.7
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||+|.. +.++.++.+++++|||||+|.++++|++|+..|||..++|
T Consensus 22 l~~~f~~~G~i~~---------------------------~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (85)
T 1x4e_A 22 LVKLCQPYGKIVS---------------------------TKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQA 74 (85)
T ss_dssp HHTTSTTTSCEEE---------------------------EEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHhcCCeEE---------------------------EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEee
Confidence 7889999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEecc
Q 033751 82 RVIFVDNVR 90 (112)
Q Consensus 82 ~~i~V~~a~ 90 (112)
+.+++++++
T Consensus 75 ~~~~~~~~~ 83 (85)
T 1x4e_A 75 QMAKQSGPS 83 (85)
T ss_dssp ESCCSSCCC
T ss_pred EEEeecCCC
Confidence 988776654
No 89
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.50 E-value=6.5e-14 Score=90.62 Aligned_cols=56 Identities=25% Similarity=0.372 Sum_probs=52.5
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|.+||+|.. ++++. ++|||||+|.++++|.+|++.||+..++|
T Consensus 24 L~~lF~q~G~V~~---------------------------~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~g 70 (89)
T 2wbr_A 24 LRTLCMQHGPLVS---------------------------FHPYL------NQGIALCKYTTREEANKAQMALNNCVLAN 70 (89)
T ss_dssp HHHHHHHHSCEEE---------------------------EEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred HHHHHHhhCCEEE---------------------------EEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECC
Confidence 7899999999999 88754 68999999999999999999999999999
Q ss_pred eeEEEEecc
Q 033751 82 RVIFVDNVR 90 (112)
Q Consensus 82 ~~i~V~~a~ 90 (112)
+.|+|++|.
T Consensus 71 r~I~V~~A~ 79 (89)
T 2wbr_A 71 TTIFAESPS 79 (89)
T ss_dssp EEEEEECCC
T ss_pred cEEEEEECC
Confidence 999999984
No 90
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.3e-14 Score=93.10 Aligned_cols=61 Identities=18% Similarity=0.182 Sum_probs=57.6
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||+|.. ++|++|+. ++++|||||+|.++++|++|+. ++|..++|
T Consensus 28 L~~~F~~~G~v~~---------------------------v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~g 78 (103)
T 1s79_A 28 IKEWLEDKGQVLN---------------------------IQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKE 78 (103)
T ss_dssp HHHHHHTSSCEEE---------------------------EEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTT
T ss_pred HHHHHhhcCCEEE---------------------------EEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECC
Confidence 7899999999999 99999986 9999999999999999999999 99999999
Q ss_pred eeEEEEeccC
Q 033751 82 RVIFVDNVRP 91 (112)
Q Consensus 82 ~~i~V~~a~~ 91 (112)
+.|.|.++..
T Consensus 79 r~l~V~~~~~ 88 (103)
T 1s79_A 79 TDLLILFKDD 88 (103)
T ss_dssp TTCEEEEHHH
T ss_pred EEEEEEEchH
Confidence 9999998753
No 91
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2.3e-13 Score=87.01 Aligned_cols=63 Identities=25% Similarity=0.473 Sum_probs=56.3
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +.|. +++|||||+|.+.++|++|+..|||..++|
T Consensus 30 l~~~F~~~G~i~~---------------------------v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 76 (97)
T 1x5p_A 30 LRGAFSPFGNIID---------------------------LSMD------PPRNCAFVTYEKMESADQAVAELNGTQVES 76 (97)
T ss_dssp HHHHHTTTSCEEE---------------------------EEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETT
T ss_pred HHHHHhhCCCEEE---------------------------EEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 7899999999999 8773 578999999999999999999999999999
Q ss_pred eeEEEEeccCCCCCCC
Q 033751 82 RVIFVDNVRPSRRYNT 97 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~~ 97 (112)
+.|.|+++++.....+
T Consensus 77 ~~l~v~~a~~~~~~~~ 92 (97)
T 1x5p_A 77 VQLKVNIARKQPMLDS 92 (97)
T ss_dssp EEEEEECCSSCCCCCS
T ss_pred eEEEEEECCCCCCCCC
Confidence 9999999987655444
No 92
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.3e-13 Score=93.52 Aligned_cols=63 Identities=30% Similarity=0.615 Sum_probs=60.3
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +.++.++.++.++|+|||+|.++++|.+|+..|||..++|
T Consensus 104 l~~~f~~~G~i~~---------------------------~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 156 (166)
T 3md3_A 104 LRNAFKDFPSYLS---------------------------GHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG 156 (166)
T ss_dssp HHHHHTTSTTEEE---------------------------EEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred HHHHHhccCCeeE---------------------------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC
Confidence 7899999999999 9999999899999999999999999999999999999999
Q ss_pred eeEEEEeccC
Q 033751 82 RVIFVDNVRP 91 (112)
Q Consensus 82 ~~i~V~~a~~ 91 (112)
+.|.|++|++
T Consensus 157 ~~i~v~~a~~ 166 (166)
T 3md3_A 157 RPLRINWAAK 166 (166)
T ss_dssp EECEEEESCC
T ss_pred cEEEEEecCC
Confidence 9999999863
No 93
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=5.9e-14 Score=91.49 Aligned_cols=65 Identities=20% Similarity=0.214 Sum_probs=57.8
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||. +. ++|++|+ +++++|||||+|.++++|++||. +|+..+++
T Consensus 32 l~~~F~~~G~-~~---------------------------v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g 81 (102)
T 1wez_A 32 IYNFFSPLNP-MR---------------------------VHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQH 81 (102)
T ss_dssp HHHSSCSCCC-SE---------------------------EEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSS
T ss_pred HHHHHHHcCc-eE---------------------------EEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECC
Confidence 7889999994 48 9999998 89999999999999999999995 89999999
Q ss_pred eeEEEEeccCCCCCC
Q 033751 82 RVIFVDNVRPSRRYN 96 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~ 96 (112)
+.|.|..+.+.....
T Consensus 82 r~i~V~~~~~~~~~~ 96 (102)
T 1wez_A 82 RYVELFLNSTAGTSG 96 (102)
T ss_dssp SCCEEEEECCCCCCC
T ss_pred cEEEEEECCCCCCCC
Confidence 999999987665443
No 94
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.48 E-value=1.6e-13 Score=97.29 Aligned_cols=66 Identities=26% Similarity=0.490 Sum_probs=62.4
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. ++++.++.+++++|||||+|.+.++|.+|+..|||..++|
T Consensus 142 l~~~f~~~G~v~~---------------------------v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 194 (216)
T 2qfj_A 142 IKSVFEAFGKIKS---------------------------ATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGG 194 (216)
T ss_dssp HHHHHTTSSCEEE---------------------------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred HHHHHhccCCeeE---------------------------EEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCC
Confidence 7899999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEeccCCCC
Q 033751 82 RVIFVDNVRPSRR 94 (112)
Q Consensus 82 ~~i~V~~a~~~~~ 94 (112)
+.|.|+++.+...
T Consensus 195 ~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 195 QYLRVGKAVTPPM 207 (216)
T ss_dssp SBCEEEECSSCSS
T ss_pred cEEEEEEecCCCC
Confidence 9999999987543
No 95
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.48 E-value=1.1e-13 Score=88.92 Aligned_cols=62 Identities=26% Similarity=0.468 Sum_probs=57.1
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||+|.. +.++.+ ++|||||+|.++++|++|+..|||..++|
T Consensus 17 l~~~F~~~G~i~~---------------------------v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g 64 (101)
T 2hvz_A 17 LERAFSYYGPLRT---------------------------VWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICG 64 (101)
T ss_dssp HHHHHHHHCCCSE---------------------------EEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSS
T ss_pred HHHHHHhcCCeEE---------------------------EEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECC
Confidence 7899999999999 988877 78999999999999999999999999999
Q ss_pred eeEEEEeccCCCCC
Q 033751 82 RVIFVDNVRPSRRY 95 (112)
Q Consensus 82 ~~i~V~~a~~~~~~ 95 (112)
+.|.|+++++....
T Consensus 65 ~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 65 SRVRVELSTGMPRR 78 (101)
T ss_dssp CCCEEEESSSCCCS
T ss_pred cEEEEEEccCCCCc
Confidence 99999999876544
No 96
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=2.1e-13 Score=85.98 Aligned_cols=61 Identities=28% Similarity=0.516 Sum_probs=55.3
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. ++++ +|||||+|.++++|++|+..|||..++|
T Consensus 25 l~~~F~~~G~i~~---------------------------v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g 69 (90)
T 2dnq_A 25 IRSLFEQYGKVLE---------------------------CDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHG 69 (90)
T ss_dssp HHHHHHTSSCEEE---------------------------EEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred HHHHHHhCCCEEE---------------------------EEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCC
Confidence 7899999999999 8876 6899999999999999999999999999
Q ss_pred eeEEEEeccCCCCCCC
Q 033751 82 RVIFVDNVRPSRRYNT 97 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~~ 97 (112)
+.|.|+++++.....+
T Consensus 70 ~~l~v~~a~~~~~~~~ 85 (90)
T 2dnq_A 70 VNINVEASKNKSKASS 85 (90)
T ss_dssp CBCEEECSSCCCCCCS
T ss_pred cEEEEEECCCCCCCCC
Confidence 9999999987665544
No 97
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.9e-13 Score=89.13 Aligned_cols=64 Identities=27% Similarity=0.493 Sum_probs=56.6
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||+|.+ +.| .|+ .++|||||+|.++++|++|+..|||..++|
T Consensus 43 l~~~f~~~G~v~~---------------------------v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 43 LRVECSKFGQIRK---------------------------LLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp HHHHGGGTSCCSE---------------------------EEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred HHHHHHccCCEeE---------------------------EEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 6889999999999 854 554 389999999999999999999999999999
Q ss_pred eeEEEEeccCCCCCC
Q 033751 82 RVIFVDNVRPSRRYN 96 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~ 96 (112)
+.|.|+++.+.....
T Consensus 92 r~l~v~~a~~~~~~~ 106 (112)
T 2dit_A 92 RQITAQAWDGTTDYQ 106 (112)
T ss_dssp EECEEEECCSCCCSS
T ss_pred cEEEEEEeCCCCCcc
Confidence 999999998765543
No 98
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2.1e-13 Score=88.91 Aligned_cols=62 Identities=34% Similarity=0.591 Sum_probs=56.4
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. ++++.+ +|||||+|.+.++|++|+..|||..++|
T Consensus 42 l~~~F~~~G~i~~---------------------------v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g 88 (109)
T 1x4g_A 42 MRQTFSPFGQIME---------------------------IRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEG 88 (109)
T ss_dssp HHHHHHHHSCEEE---------------------------EEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred HHHHHHhcCCeEE---------------------------EEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 7899999999999 888776 6899999999999999999999999999
Q ss_pred eeEEEEeccCCCCCC
Q 033751 82 RVIFVDNVRPSRRYN 96 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~ 96 (112)
+.|.|+++++.....
T Consensus 89 ~~l~v~~a~~~~~~~ 103 (109)
T 1x4g_A 89 HVVKCYWGKESPDMT 103 (109)
T ss_dssp EECEEECCCCCCSSC
T ss_pred cEEEEEecCCCCCCC
Confidence 999999998765543
No 99
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=7.3e-14 Score=94.96 Aligned_cols=62 Identities=19% Similarity=0.322 Sum_probs=55.3
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|.++|++||.|.+ +.+. .+++++|||||+|.+.++|+.|+..|||..+.|
T Consensus 50 L~~~F~~~G~I~~---------------------------v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g 99 (127)
T 2a3j_A 50 LYALASSQGDILD---------------------------IVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQG 99 (127)
T ss_dssp HHHHHHHHSCEEE---------------------------EEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT
T ss_pred HHHHhccCCCeEE---------------------------EEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 4579999999988 7663 267899999999999999999999999999999
Q ss_pred eeEEEEeccCCC
Q 033751 82 RVIFVDNVRPSR 93 (112)
Q Consensus 82 ~~i~V~~a~~~~ 93 (112)
+.|.|+++++..
T Consensus 100 r~l~V~~a~~~~ 111 (127)
T 2a3j_A 100 NPLVITFSETPQ 111 (127)
T ss_dssp SCCEEEECCCCC
T ss_pred CEEEEEEccCcc
Confidence 999999997653
No 100
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.5e-13 Score=90.05 Aligned_cols=63 Identities=25% Similarity=0.528 Sum_probs=58.6
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCcee--
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL-- 79 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l-- 79 (112)
|+++|++||.|.. ++|+.++ ++.++|||||+|.+.++|++|+..|||..+
T Consensus 42 l~~~F~~~G~i~~---------------------------~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~ 93 (114)
T 1x5o_A 42 LENMLKPFGQVIS---------------------------TRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKT 93 (114)
T ss_dssp HHHTTTTTSCEEE---------------------------EEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCC
T ss_pred HHHHHHhcCCEEE---------------------------EEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcC
Confidence 7899999999999 9999998 999999999999999999999999999999
Q ss_pred ------CCeeEEEEeccCC
Q 033751 80 ------DGRVIFVDNVRPS 92 (112)
Q Consensus 80 ------~g~~i~V~~a~~~ 92 (112)
.+++|.|+++.+.
T Consensus 94 ~~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 94 PPGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp CTTSCCCSSCBEEEECCCS
T ss_pred CccccCCCCceeEEccCCC
Confidence 5778999998754
No 101
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.47 E-value=4.4e-14 Score=104.13 Aligned_cols=62 Identities=23% Similarity=0.408 Sum_probs=59.8
Q ss_pred HHHHhhccC--cceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCcee
Q 033751 2 LADAFSQFG--QVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 79 (112)
Q Consensus 2 l~~~f~~~G--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l 79 (112)
|+++|++|| .|.+ |+|++|+.+++++|||||+|.+.++|++||..|||..|
T Consensus 85 L~~~F~~~G~~~v~~---------------------------v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~ 137 (229)
T 3q2s_C 85 LTEAVHSLGVNDILE---------------------------IKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL 137 (229)
T ss_dssp HHHHHHTTTCCCEEE---------------------------EEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCB
T ss_pred HHHHHHHHCCcceEE---------------------------EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeE
Confidence 789999999 9999 99999999999999999999999999999999999999
Q ss_pred CCeeEEEEecc
Q 033751 80 DGRVIFVDNVR 90 (112)
Q Consensus 80 ~g~~i~V~~a~ 90 (112)
+|+.|.|++++
T Consensus 138 ~Gr~l~V~~a~ 148 (229)
T 3q2s_C 138 HGQNPVVTPVN 148 (229)
T ss_dssp TTBCCEEEECC
T ss_pred CCEEeEEEECC
Confidence 99999999874
No 102
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.47 E-value=8.5e-14 Score=96.09 Aligned_cols=63 Identities=13% Similarity=0.197 Sum_probs=56.6
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCC----HHH----HHHHHH-
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFST----EEE----AQKALA- 72 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~----~~~----a~~Ai~- 72 (112)
|+.+|+.||+|.+ +.++.|++||+++|||||+|.+ +++ |.+|+.
T Consensus 23 Lk~~Fs~fGeV~~---------------------------~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~ 75 (136)
T 2j8a_A 23 IKNYFKKYGEISH---------------------------FEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRK 75 (136)
T ss_dssp HHHHHHTTSCCSE---------------------------EEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHH
T ss_pred HHHHHHhcCCeEE---------------------------EEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHH
Confidence 7899999999999 9999999999999999999996 433 889988
Q ss_pred -hhCCceeCCeeEEEEeccC
Q 033751 73 -DMNGKLLDGRVIFVDNVRP 91 (112)
Q Consensus 73 -~l~g~~l~g~~i~V~~a~~ 91 (112)
.+||..|+|+.|+|.+.+.
T Consensus 76 ~~lng~~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 76 HESSGCFIMGFKFEVILNKH 95 (136)
T ss_dssp TTTTCEEETTEEEEEEECCT
T ss_pred hhhcCCeecCcEEEEEECcc
Confidence 8899999999999998764
No 103
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=2.4e-13 Score=87.31 Aligned_cols=55 Identities=27% Similarity=0.503 Sum_probs=47.4
Q ss_pred EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeeEEEEeccCCCCCCC
Q 033751 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNT 97 (112)
Q Consensus 42 ~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~~~~~ 97 (112)
++++.+ .+++++|||||+|.++++|++|+..|||..++|+.|.|+++++......
T Consensus 42 v~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~ 96 (101)
T 2fc9_A 42 IKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNS 96 (101)
T ss_dssp EECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCCCCCC
T ss_pred EEEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCCCCCC
Confidence 344555 5889999999999999999999999999999999999999987655443
No 104
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.5e-13 Score=90.16 Aligned_cols=62 Identities=35% Similarity=0.719 Sum_probs=57.7
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. ++++.++ +.++|||||+|.+.++|++|+..|||..++|
T Consensus 46 l~~~F~~~G~i~~---------------------------v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g 96 (109)
T 2err_A 46 LRQMFGQFGKILD---------------------------VEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEG 96 (109)
T ss_dssp HHHHGGGTCCCSC---------------------------EEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETT
T ss_pred HHHHHHhcCCEEE---------------------------EEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 7899999999999 9999985 4589999999999999999999999999999
Q ss_pred eeEEEEeccCC
Q 033751 82 RVIFVDNVRPS 92 (112)
Q Consensus 82 ~~i~V~~a~~~ 92 (112)
+.|.|++++++
T Consensus 97 ~~l~V~~a~~~ 107 (109)
T 2err_A 97 RKIEVNNATAR 107 (109)
T ss_dssp EECEEEECCCS
T ss_pred EEEEEEECCCC
Confidence 99999999764
No 105
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=4e-13 Score=87.69 Aligned_cols=60 Identities=25% Similarity=0.328 Sum_probs=55.3
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +.|+.| |||||+|.++++|++||..|||..++|
T Consensus 32 l~~~F~~~G~i~~---------------------------~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 32 LKDHMREAGDVCY---------------------------ADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp HHHHHGGGSCEEE---------------------------EEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred HHHHHHhcCCEeE---------------------------EEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 7899999999999 988776 899999999999999999999999999
Q ss_pred -----eeEEEEeccCCCCC
Q 033751 82 -----RVIFVDNVRPSRRY 95 (112)
Q Consensus 82 -----~~i~V~~a~~~~~~ 95 (112)
+.|.|+++.++.+.
T Consensus 78 ~~~~~~~i~V~~a~~~~~~ 96 (108)
T 1x4c_A 78 HEGETAYIRVKVDGPRSPS 96 (108)
T ss_dssp TTSCEEEEEEEESSCCSCC
T ss_pred CcCcceEEEEEeCCCCCCC
Confidence 99999999876544
No 106
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.46 E-value=2.7e-14 Score=88.68 Aligned_cols=56 Identities=25% Similarity=0.494 Sum_probs=51.6
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||+|.. +.++ +.+|+++|||||+|.++++|++|+..|||..++|
T Consensus 24 l~~~F~~~G~i~~---------------------------v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 74 (81)
T 2krb_A 24 IHKIFSKFGKITN---------------------------DFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 74 (81)
T ss_dssp HHHHHHTTCCEEE---------------------------EECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSS
T ss_pred HHHHHhhcCCeEE---------------------------EEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCC
Confidence 7899999999999 8877 3589999999999999999999999999999999
Q ss_pred e-eEEE
Q 033751 82 R-VIFV 86 (112)
Q Consensus 82 ~-~i~V 86 (112)
+ .|+|
T Consensus 75 ~~~l~V 80 (81)
T 2krb_A 75 QHTFRV 80 (81)
T ss_dssp SSCCCC
T ss_pred ceeEEe
Confidence 9 8876
No 107
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.46 E-value=1.7e-13 Score=92.23 Aligned_cols=63 Identities=24% Similarity=0.406 Sum_probs=57.7
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCC----CCCcccEEEEEeCCHHHHHHHHHhhCCc
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKG----KNRSKGYGYVTFSTEEEAQKALADMNGK 77 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~----t~~~rG~afV~f~~~~~a~~Ai~~l~g~ 77 (112)
|+++|++||+|.+ +.|++++. +++++|++||+|.++++|++|+..|||+
T Consensus 42 l~eef~k~G~V~~---------------------------v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr 94 (118)
T 3ue2_A 42 VTEECGKFGAVNR---------------------------VIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR 94 (118)
T ss_dssp HHHHHTTTSCEEE---------------------------EEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred HHHHHhccCCEeE---------------------------EEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCC
Confidence 6889999999999 99999865 4578899999999999999999999999
Q ss_pred eeCCeeEEEEeccC
Q 033751 78 LLDGRVIFVDNVRP 91 (112)
Q Consensus 78 ~l~g~~i~V~~a~~ 91 (112)
.++|+.|.|.++..
T Consensus 95 ~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 95 WFAGRKVVAEVYDQ 108 (118)
T ss_dssp EETTEECEEEEECH
T ss_pred EECCcEEEEEEcCh
Confidence 99999999998753
No 108
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.45 E-value=2.2e-13 Score=95.38 Aligned_cols=66 Identities=20% Similarity=0.456 Sum_probs=62.5
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +.++.++.++.++|||||+|.++++|++|+..|||..++|
T Consensus 131 l~~~f~~~G~v~~---------------------------~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 183 (198)
T 2yh0_A 131 VKELLTSFGPLKA---------------------------FNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGD 183 (198)
T ss_dssp HHHHHHTBSCEEE---------------------------EEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETT
T ss_pred HHHHHHHcCCccE---------------------------EEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 7899999999999 9999999899999999999999999999999999999999
Q ss_pred eeEEEEeccCCCC
Q 033751 82 RVIFVDNVRPSRR 94 (112)
Q Consensus 82 ~~i~V~~a~~~~~ 94 (112)
+.|.|++++++..
T Consensus 184 ~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 184 KKLLVQRASVGAK 196 (198)
T ss_dssp EECEEEESCCCCC
T ss_pred EEEEEEECCCCCC
Confidence 9999999987654
No 109
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.45 E-value=2.8e-13 Score=94.68 Aligned_cols=68 Identities=22% Similarity=0.490 Sum_probs=58.5
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. ++++.|+.++.++|||||+|.++++|.+|+.. +|..++|
T Consensus 121 l~~~F~~~G~i~~---------------------------v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G 172 (196)
T 1l3k_A 121 LRDYFEQYGKIEV---------------------------IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNG 172 (196)
T ss_dssp HHHHHTTTSCEEE---------------------------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETT
T ss_pred HHHHHhcCCCeEE---------------------------EEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECC
Confidence 7899999999999 99999998999999999999999999999986 7999999
Q ss_pred eeEEEEeccCCCCCCC
Q 033751 82 RVIFVDNVRPSRRYNT 97 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~~ 97 (112)
+.|.|+++.++.....
T Consensus 173 ~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 173 HNCEVRKALSKQEMAS 188 (196)
T ss_dssp EECEEEECC-------
T ss_pred EEEEEEecCChhHhcc
Confidence 9999999987665543
No 110
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.44 E-value=3.8e-14 Score=86.30 Aligned_cols=60 Identities=22% Similarity=0.396 Sum_probs=56.4
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||+|.. +.++.++.+++++|||||+|.++++|++|+. +++..++|
T Consensus 16 l~~~F~~~G~i~~---------------------------v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g 67 (75)
T 1iqt_A 16 IREYFGGFGEVES---------------------------IELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGL 67 (75)
T ss_dssp HHHHHHHHSCCSE---------------------------ECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTT
T ss_pred HHHHHHhcCCeEE---------------------------EEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECC
Confidence 7899999999999 9999999899999999999999999999999 58999999
Q ss_pred eeEEEEec
Q 033751 82 RVIFVDNV 89 (112)
Q Consensus 82 ~~i~V~~a 89 (112)
+.|.|++|
T Consensus 68 ~~l~v~~a 75 (75)
T 1iqt_A 68 SKCEIKVA 75 (75)
T ss_dssp BCCCEEEC
T ss_pred EEEEEEEC
Confidence 99999875
No 111
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.44 E-value=2.7e-13 Score=93.03 Aligned_cols=61 Identities=21% Similarity=0.490 Sum_probs=59.0
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +.++.++.+++++|||||+|.++++|++|+..|||..++|
T Consensus 111 l~~~f~~~G~v~~---------------------------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 163 (172)
T 2g4b_A 111 VKELLTSFGPLKA---------------------------FNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGD 163 (172)
T ss_dssp HHHHHHTTSCEEE---------------------------EEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETT
T ss_pred HHHHHHhcCCceE---------------------------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECC
Confidence 7899999999999 9999998899999999999999999999999999999999
Q ss_pred eeEEEEec
Q 033751 82 RVIFVDNV 89 (112)
Q Consensus 82 ~~i~V~~a 89 (112)
+.|.|++|
T Consensus 164 ~~l~V~~A 171 (172)
T 2g4b_A 164 KKLLVQRA 171 (172)
T ss_dssp EECEEEEC
T ss_pred eEEEEEeC
Confidence 99999987
No 112
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.16 E-value=8.7e-15 Score=96.51 Aligned_cols=81 Identities=22% Similarity=0.288 Sum_probs=64.4
Q ss_pred CHHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 1 MLADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
.|+++|++||.|.... ......++|+.|+.+++++|||||+|.+.++|++|+..|||..++
T Consensus 23 ~l~~~F~~~G~i~~~~-------------------~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 23 SVADYFKQIGIIKTNK-------------------KTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 3788999999986510 000111578888889999999999999999999999999999999
Q ss_pred CeeEEEEeccCCCCCCCCCC
Q 033751 81 GRVIFVDNVRPSRRYNTDAP 100 (112)
Q Consensus 81 g~~i~V~~a~~~~~~~~~~~ 100 (112)
|+.|.|++++++....++..
T Consensus 84 g~~l~V~~a~~~~~~~~ggg 103 (116)
T 2lcw_A 84 GNPIKVSFATRRADFNRGGG 103 (116)
Confidence 99999999987766554433
No 113
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.43 E-value=6.4e-13 Score=90.22 Aligned_cols=66 Identities=30% Similarity=0.568 Sum_probs=62.0
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|+.||+|.. +++++++.+++++|||||+|.++++|++|+..|||..+.|
T Consensus 19 l~~~f~~~G~i~~---------------------------v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 71 (167)
T 1fxl_A 19 FRSLFGSIGEIES---------------------------CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT 71 (167)
T ss_dssp HHHHHHTTSCEEE---------------------------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred HHHHHHhcCCeEE---------------------------EEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 7899999999999 9999999899999999999999999999999999999999
Q ss_pred eeEEEEeccCCCC
Q 033751 82 RVIFVDNVRPSRR 94 (112)
Q Consensus 82 ~~i~V~~a~~~~~ 94 (112)
+.|.|.++.+...
T Consensus 72 ~~l~v~~~~~~~~ 84 (167)
T 1fxl_A 72 KTIKVSYARPSSA 84 (167)
T ss_dssp EECEEEECCCCCG
T ss_pred ceEEEEecCCCcc
Confidence 9999999976543
No 114
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.5e-13 Score=90.60 Aligned_cols=63 Identities=22% Similarity=0.326 Sum_probs=58.4
Q ss_pred HHHHhhccCcc-eecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 2 LADAFSQFGQV-TEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 2 l~~~f~~~G~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
|+++|+.||.| .. ++|++|+ +++++|||||+|.+.++|++||.. |+..++
T Consensus 32 l~~~F~~~g~v~~~---------------------------v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~ 82 (114)
T 2cpy_A 32 VLQFLEGIPVDENA---------------------------VHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLN 82 (114)
T ss_dssp HHHHTTTSCCCSTT---------------------------EEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEET
T ss_pred HHHHHHhCCCcCCe---------------------------EEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccC
Confidence 78999999999 88 9999998 999999999999999999999996 999999
Q ss_pred CeeEEEEeccCCC
Q 033751 81 GRVIFVDNVRPSR 93 (112)
Q Consensus 81 g~~i~V~~a~~~~ 93 (112)
|+.|.|.++.+..
T Consensus 83 gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 83 GREAFVHVVTLED 95 (114)
T ss_dssp TEEEEEEEECHHH
T ss_pred CeEEEEEECCHHH
Confidence 9999999986543
No 115
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=9.1e-13 Score=83.35 Aligned_cols=62 Identities=24% Similarity=0.480 Sum_probs=55.1
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +.++ ++||||+|.++++|++|+..|||..++|
T Consensus 27 l~~~F~~~G~v~~---------------------------v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g 71 (92)
T 2dgt_A 27 LRAKFEEYGPVIE---------------------------CDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQG 71 (92)
T ss_dssp HHHHHHTTSCCCE---------------------------EEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETT
T ss_pred HHHHHHhcCCeEE---------------------------EEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 7899999999999 8875 3499999999999999999999999999
Q ss_pred eeEEEEeccCCCCCCCC
Q 033751 82 RVIFVDNVRPSRRYNTD 98 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~~~ 98 (112)
+.|.|+++++.....++
T Consensus 72 ~~l~V~~a~~~~~~~~~ 88 (92)
T 2dgt_A 72 KRMHVQLSTSRLRTASG 88 (92)
T ss_dssp EEEEEEESSCCCSCCCC
T ss_pred cEEEEEEccCCCCCCCC
Confidence 99999999876655443
No 116
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=3.7e-13 Score=85.93 Aligned_cols=60 Identities=27% Similarity=0.460 Sum_probs=54.4
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC-
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD- 80 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~- 80 (112)
|+++|++||.|.. +.++.+ +|||||+|.++++|++|+..|||..++
T Consensus 34 l~~~F~~~G~v~~---------------------------v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~ 80 (97)
T 1why_A 34 LAREFDRFGSIRT---------------------------IDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGG 80 (97)
T ss_dssp HHHHHHTTSCEEE---------------------------EEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred HHHHHHhcCCeeE---------------------------EEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 7899999999999 877643 689999999999999999999999999
Q ss_pred -CeeEEEEeccCCCC
Q 033751 81 -GRVIFVDNVRPSRR 94 (112)
Q Consensus 81 -g~~i~V~~a~~~~~ 94 (112)
|+.|.|++++++..
T Consensus 81 ~g~~l~V~~a~~~~~ 95 (97)
T 1why_A 81 PDRRLRVDFAKSGPS 95 (97)
T ss_dssp SSCBCEEEECCCCCC
T ss_pred CCcEEEEEECCCCCC
Confidence 99999999987654
No 117
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.43 E-value=1.8e-13 Score=93.53 Aligned_cols=63 Identities=24% Similarity=0.536 Sum_probs=59.9
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. ++++.|+.++.++|||||+|.++++|++|+. ++|..++|
T Consensus 104 l~~~F~~~G~i~~---------------------------~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g 155 (167)
T 2cjk_A 104 FEEFFSQWGTIID---------------------------AQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKD 155 (167)
T ss_dssp HHHHHHTTSCCSE---------------------------EECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSS
T ss_pred HHHHHHhCccEEE---------------------------EEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCC
Confidence 7899999999999 9999998899999999999999999999998 89999999
Q ss_pred eeEEEEeccCC
Q 033751 82 RVIFVDNVRPS 92 (112)
Q Consensus 82 ~~i~V~~a~~~ 92 (112)
+.|.|+++.++
T Consensus 156 ~~i~V~~a~pk 166 (167)
T 2cjk_A 156 RKIEIKRAEPR 166 (167)
T ss_dssp SCEEEEECCCC
T ss_pred eEEEEeecCCC
Confidence 99999999875
No 118
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=4.4e-13 Score=85.87 Aligned_cols=62 Identities=24% Similarity=0.417 Sum_probs=55.6
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||+|.. ++++++ +|||||+|.+.++|++|+..|||..++|
T Consensus 32 l~~~F~~~G~i~~---------------------------v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g 78 (99)
T 2cpj_A 32 MRKLFEKYGKAGE---------------------------VFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRG 78 (99)
T ss_dssp HHHHTSTTCCCSE---------------------------EEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTT
T ss_pred HHHHHhhcCCeEE---------------------------EEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 7899999999999 888644 6899999999999999999999999999
Q ss_pred eeEEEEeccCCCCCC
Q 033751 82 RVIFVDNVRPSRRYN 96 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~ 96 (112)
+.|.|+++++.....
T Consensus 79 ~~l~v~~a~~~~~~~ 93 (99)
T 2cpj_A 79 KQLRVRFACHSASLT 93 (99)
T ss_dssp BCCEEEESSCCSCCC
T ss_pred ceEEEEEcCCCCCCC
Confidence 999999998765543
No 119
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.42 E-value=1.3e-12 Score=84.39 Aligned_cols=60 Identities=35% Similarity=0.617 Sum_probs=53.9
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +.++ +|||||+|.++++|++|+..|||..++|
T Consensus 28 l~~~F~~~G~i~~---------------------------v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g 72 (103)
T 2dgu_A 28 LEKAFSQFGKLER---------------------------VKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEG 72 (103)
T ss_dssp HHHHHHHHSCEEE---------------------------EEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred HHHHHHhcCCEEE---------------------------EEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCC
Confidence 7899999999999 8775 4699999999999999999999999999
Q ss_pred eeEEEEeccCCCCCC
Q 033751 82 RVIFVDNVRPSRRYN 96 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~ 96 (112)
+.|.|+++++.....
T Consensus 73 ~~l~v~~a~~~~~~~ 87 (103)
T 2dgu_A 73 ENIEIVFAKPPDQKR 87 (103)
T ss_dssp EEEEEEECCCCCCCC
T ss_pred CEEEEEEcCCCcccc
Confidence 999999998665543
No 120
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.42 E-value=5.5e-13 Score=87.03 Aligned_cols=59 Identities=27% Similarity=0.580 Sum_probs=53.6
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +.+ ++|||||+|.++++|++|+..|||..++|
T Consensus 45 l~~~F~~~G~v~~---------------------------v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g 89 (110)
T 1wf1_A 45 VETIFSKYGRVAG---------------------------CSV--------HKGYAFVQYSNERHARAAVLGENGRVLAG 89 (110)
T ss_dssp HHHHHGGGSCCSE---------------------------EEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETT
T ss_pred HHHHHHhCCCeEE---------------------------EEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 7899999999999 877 57999999999999999999999999999
Q ss_pred eeEEEEeccCCCCC
Q 033751 82 RVIFVDNVRPSRRY 95 (112)
Q Consensus 82 ~~i~V~~a~~~~~~ 95 (112)
+.|.|+++++....
T Consensus 90 ~~l~V~~a~~~~~~ 103 (110)
T 1wf1_A 90 QTLDINMAGEPKPD 103 (110)
T ss_dssp EECCEEESCCCCSC
T ss_pred eEEEEEECCCCCCC
Confidence 99999999754443
No 121
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.42 E-value=6.4e-13 Score=90.66 Aligned_cols=66 Identities=27% Similarity=0.485 Sum_probs=62.1
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||+|.. +++++++.+++++|||||+|.++++|++|+..|+|..+.|
T Consensus 20 l~~~f~~~G~i~~---------------------------v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 72 (168)
T 1b7f_A 20 LYALFRAIGPINT---------------------------CRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRN 72 (168)
T ss_dssp HHHHHHTTSCEEE---------------------------EECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred HHHHHHhcCCeeE---------------------------EEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCC
Confidence 7899999999999 9999999899999999999999999999999999999999
Q ss_pred eeEEEEeccCCCC
Q 033751 82 RVIFVDNVRPSRR 94 (112)
Q Consensus 82 ~~i~V~~a~~~~~ 94 (112)
+.|.|.++.+...
T Consensus 73 ~~l~v~~~~~~~~ 85 (168)
T 1b7f_A 73 KRLKVSYARPGGE 85 (168)
T ss_dssp EECEEEECCCCSS
T ss_pred cEEEEEecCCCcc
Confidence 9999999976544
No 122
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.42 E-value=4.2e-13 Score=89.29 Aligned_cols=62 Identities=19% Similarity=0.286 Sum_probs=57.5
Q ss_pred HHHHhhccCc---ceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCce
Q 033751 2 LADAFSQFGQ---VTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKL 78 (112)
Q Consensus 2 l~~~f~~~G~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~ 78 (112)
|+++|+.||. |.. ++|++|+. ++++|||||+|.++++|++||. +||..
T Consensus 34 l~~~F~~~G~~~~v~~---------------------------v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~ 84 (118)
T 2db1_A 34 VQNFLSDCTIHDGVAG---------------------------VHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRES 84 (118)
T ss_dssp HHHHTTTSCBTTGGGG---------------------------EEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEE
T ss_pred HHHHHHHcCCccCcee---------------------------EEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCe
Confidence 7899999999 788 99999986 9999999999999999999999 99999
Q ss_pred eCCeeEEEEeccCC
Q 033751 79 LDGRVIFVDNVRPS 92 (112)
Q Consensus 79 l~g~~i~V~~a~~~ 92 (112)
++|+.|.|..+...
T Consensus 85 ~~gr~i~V~~a~~~ 98 (118)
T 2db1_A 85 MGHRYIEVFKSHRT 98 (118)
T ss_dssp ETTEEEEEEEECHH
T ss_pred ECCeEEEEEECCHH
Confidence 99999999998543
No 123
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=1.1e-12 Score=85.78 Aligned_cols=62 Identities=18% Similarity=0.221 Sum_probs=54.2
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhh--CCcee
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADM--NGKLL 79 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l--~g~~l 79 (112)
|+++|++||.|.. +.++++ +|||||+|.+.++|++|+..| ++..+
T Consensus 32 L~~~F~~fG~v~~---------------------------v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~ 78 (101)
T 2cq1_A 32 VIALGLPFGKVTN---------------------------ILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHL 78 (101)
T ss_dssp HHHTTTTTSCEEE---------------------------EEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEE
T ss_pred HHHHHHhcCCEEE---------------------------EEEECC------CCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 7899999999999 887654 799999999999999999977 46789
Q ss_pred CCeeEEEEeccCCCCCC
Q 033751 80 DGRVIFVDNVRPSRRYN 96 (112)
Q Consensus 80 ~g~~i~V~~a~~~~~~~ 96 (112)
.|++|.|++++++....
T Consensus 79 ~Gr~l~V~~a~~~~~~~ 95 (101)
T 2cq1_A 79 RNQPIYIQYSNHKELKT 95 (101)
T ss_dssp TTEECEEEECSCSSCCC
T ss_pred CCcEEEEEEcCcccCcC
Confidence 99999999998765544
No 124
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=3.2e-13 Score=88.82 Aligned_cols=61 Identities=21% Similarity=0.319 Sum_probs=53.5
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCc--ee
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGK--LL 79 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~--~l 79 (112)
|+++|++||.|.+ ++|+++ +|||||+|.++++|++|+..||+. .+
T Consensus 33 L~~lF~~fG~V~~---------------------------v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~ 79 (102)
T 1x4d_A 33 LLQLVEPFGVISN---------------------------HLILNK------INEAFIEMATTEDAQAAVDYYTTTPALV 79 (102)
T ss_dssp HHTTTGGGSCEEE---------------------------EEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEE
T ss_pred HHHHHHhcCCEEE---------------------------EEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceE
Confidence 7899999999999 888765 389999999999999999999865 49
Q ss_pred CCeeEEEEeccCCCCC
Q 033751 80 DGRVIFVDNVRPSRRY 95 (112)
Q Consensus 80 ~g~~i~V~~a~~~~~~ 95 (112)
+|++|.|.+++....-
T Consensus 80 ~Gr~l~V~~a~~~~~~ 95 (102)
T 1x4d_A 80 FGKPVRVHLSQKYKRI 95 (102)
T ss_dssp TTEECEEEEECCCTTS
T ss_pred CCcEEEEEECCCCCCC
Confidence 9999999999865443
No 125
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.41 E-value=6.4e-13 Score=106.17 Aligned_cols=66 Identities=24% Similarity=0.563 Sum_probs=62.1
Q ss_pred CHHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 1 MLADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
.|+.+|++||.|.. |.|+.++.+++++|||||+|.++++|++||..|||..|+
T Consensus 118 ~L~~~F~~~G~I~~---------------------------v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~ 170 (437)
T 3pgw_S 118 KLRREFEVYGPIKR---------------------------IHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKID 170 (437)
T ss_pred HHHHHHHHcCCeeE---------------------------EEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEEC
Confidence 37899999999999 999999999999999999999999999999999999999
Q ss_pred CeeEEEEeccCCC
Q 033751 81 GRVIFVDNVRPSR 93 (112)
Q Consensus 81 g~~i~V~~a~~~~ 93 (112)
|+.|.|.++.+..
T Consensus 171 gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 171 GRRVLVDVERGRT 183 (437)
T ss_pred CEEEEEEEeCCCC
Confidence 9999999997543
No 126
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.41 E-value=6.1e-14 Score=90.10 Aligned_cols=64 Identities=23% Similarity=0.383 Sum_probs=55.5
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. .++.++.+++++|||||+|.+.++|++|+. |||..++|
T Consensus 34 l~~~F~~~G~v~~----------------------------~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g 84 (101)
T 1fj7_A 34 LKVAISELFAKND----------------------------LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFG 84 (101)
T ss_dssp HHHHHHHHHHHHT----------------------------CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTT
T ss_pred HHHHHHHhCCcce----------------------------EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECC
Confidence 7889999998866 234555678999999999999999999999 99999999
Q ss_pred eeEEEEeccCCCC
Q 033751 82 RVIFVDNVRPSRR 94 (112)
Q Consensus 82 ~~i~V~~a~~~~~ 94 (112)
+.|.|++++++..
T Consensus 85 ~~l~V~~a~~~~~ 97 (101)
T 1fj7_A 85 NEIKLEKPKGRDG 97 (101)
T ss_dssp BCCEEECCSCCCC
T ss_pred cEEEEEEcCCCCC
Confidence 9999999986544
No 127
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.2e-13 Score=92.26 Aligned_cols=63 Identities=22% Similarity=0.392 Sum_probs=58.1
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|+.||.|.. +.++.+..+++++|||||+|.+.++|++||. |||..++|
T Consensus 42 l~~~F~~~G~v~~---------------------------~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g 93 (124)
T 1wel_A 42 VIDFFKKLDIVED---------------------------SIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGN 93 (124)
T ss_dssp HHHHSCSSCBCTT---------------------------TCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTT
T ss_pred HHHHHHhcCCccc---------------------------eEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECC
Confidence 7899999999988 7777888899999999999999999999999 99999999
Q ss_pred eeEEEEeccCC
Q 033751 82 RVIFVDNVRPS 92 (112)
Q Consensus 82 ~~i~V~~a~~~ 92 (112)
+.|.|.++.+.
T Consensus 94 r~i~V~~a~~~ 104 (124)
T 1wel_A 94 RFIQVHPITKK 104 (124)
T ss_dssp SCBEEEEECHH
T ss_pred cEEEEEECCHH
Confidence 99999998653
No 128
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=5.4e-13 Score=88.43 Aligned_cols=61 Identities=20% Similarity=0.310 Sum_probs=54.2
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCC--cee
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNG--KLL 79 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g--~~l 79 (112)
|+++|++||.|.+ ++|+++ +|||||+|.++++|++|+..|++ ..+
T Consensus 33 L~~lF~~fG~V~~---------------------------v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l 79 (105)
T 1sjq_A 33 VISLGLPFGKVTN---------------------------LLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVL 79 (105)
T ss_dssp HHHHHHHHCCEEE---------------------------EEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEE
T ss_pred HHHHHHhcCCEEE---------------------------EEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 7899999999999 998865 69999999999999999998864 789
Q ss_pred CCeeEEEEeccCCCCC
Q 033751 80 DGRVIFVDNVRPSRRY 95 (112)
Q Consensus 80 ~g~~i~V~~a~~~~~~ 95 (112)
+|++|.|++++++...
T Consensus 80 ~Gr~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 80 RGQPIYIQFSNHKELK 95 (105)
T ss_dssp TTEECCBCCCSSSSCC
T ss_pred CCEEEEEEEcCCCCCC
Confidence 9999999999765544
No 129
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.40 E-value=4.1e-13 Score=85.33 Aligned_cols=61 Identities=25% Similarity=0.431 Sum_probs=53.9
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. + ..+++++|||||+|.++++|++|+..|||..++|
T Consensus 33 l~~~F~~~g~v~~---------------------------~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 80 (96)
T 1fjc_A 33 LKEVFEDALEIRL---------------------------V-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG 80 (96)
T ss_dssp HHHHHCSEEEECC---------------------------E-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETT
T ss_pred HHHHHhhCCcEEE---------------------------e-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 6788999988766 4 2378899999999999999999999999999999
Q ss_pred eeEEEEeccCCCC
Q 033751 82 RVIFVDNVRPSRR 94 (112)
Q Consensus 82 ~~i~V~~a~~~~~ 94 (112)
+.|.|+++.++..
T Consensus 81 ~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 81 RSVSLYYTGEKGG 93 (96)
T ss_dssp EEEEEEECSSSCC
T ss_pred eEEEEEEcCCCCC
Confidence 9999999977554
No 130
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.40 E-value=2.4e-13 Score=86.42 Aligned_cols=62 Identities=23% Similarity=0.387 Sum_probs=55.5
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|.++|++||.|.. +.++. ++.++|||||+|.+.++|++|+..|||..++|
T Consensus 29 l~~~f~~~G~i~~---------------------------v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 78 (97)
T 1nu4_A 29 LHAIFSRFGQILD---------------------------ILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYD 78 (97)
T ss_dssp HHHHHGGGSCEEE---------------------------EECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred HHHHHHhCCCEEE---------------------------EEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 4499999999999 77753 57789999999999999999999999999999
Q ss_pred eeEEEEeccCCC
Q 033751 82 RVIFVDNVRPSR 93 (112)
Q Consensus 82 ~~i~V~~a~~~~ 93 (112)
+.|.|+++++..
T Consensus 79 ~~l~v~~a~~~~ 90 (97)
T 1nu4_A 79 KPMRIQYAKTDS 90 (97)
T ss_dssp EECEEEECSSCC
T ss_pred cEEEEEEccCCC
Confidence 999999998654
No 131
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.40 E-value=2.2e-13 Score=92.65 Aligned_cols=72 Identities=25% Similarity=0.427 Sum_probs=55.7
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|..+.+. .+..+++ ..+++++|||||+|.+.++|++|+..|||..++|
T Consensus 62 L~~~F~~~G~i~~~~~~-------------------~~~di~~---~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 62 LKYIFGRYVDFSSETQR-------------------IMFDIRL---MKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp HHHHHGGGCCTTCHHHH-------------------HHCEEEE---EEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred HHHHHHHhCCccccccc-------------------ceeeEEe---ccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 78899999998761000 0000222 2378999999999999999999999999999999
Q ss_pred eeEEEEeccCCCCC
Q 033751 82 RVIFVDNVRPSRRY 95 (112)
Q Consensus 82 ~~i~V~~a~~~~~~ 95 (112)
+.|.|+++++...+
T Consensus 120 ~~l~V~~a~~~~~~ 133 (143)
T 3egn_A 120 KPMVVQFARSARPK 133 (143)
T ss_dssp EECEEEECCCSCC-
T ss_pred cEEEEEECCCCCCc
Confidence 99999999876544
No 132
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=8.5e-13 Score=83.52 Aligned_cols=62 Identities=19% Similarity=0.377 Sum_probs=52.6
Q ss_pred HHHHhhccCc-ceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCC-cee
Q 033751 2 LADAFSQFGQ-VTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNG-KLL 79 (112)
Q Consensus 2 l~~~f~~~G~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g-~~l 79 (112)
|+++|++||. |.. +.+ .++|||||+|.++++|++|+..||| ..+
T Consensus 25 l~~~F~~~G~vv~~---------------------------~~~-------~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 70 (93)
T 2cqh_A 25 LRQLFGDRKLPLAG---------------------------QVL-------LKSGYAFVDYPDQNWAIRAIETLSGKVEL 70 (93)
T ss_dssp HHHHHHHTTCCCSS---------------------------CEE-------EETTEEEECCSCHHHHHHHHHHHTTTCEE
T ss_pred HHHHHHHcCCceEE---------------------------EEE-------cCCCEEEEEECCHHHHHHHHHHccCCeeE
Confidence 7899999999 444 443 2479999999999999999999999 999
Q ss_pred CCeeEEEEeccCCCCCCC
Q 033751 80 DGRVIFVDNVRPSRRYNT 97 (112)
Q Consensus 80 ~g~~i~V~~a~~~~~~~~ 97 (112)
+|+.|.|+++++...+..
T Consensus 71 ~g~~l~v~~a~~~~~~~~ 88 (93)
T 2cqh_A 71 HGKIMEVDYSVSKKLRSS 88 (93)
T ss_dssp TTEECEEEECCCCCCCCC
T ss_pred CCEEEEEEEccCccccCC
Confidence 999999999987655443
No 133
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.39 E-value=4.3e-13 Score=92.17 Aligned_cols=61 Identities=18% Similarity=0.269 Sum_probs=57.3
Q ss_pred HHHHhhccCc---ceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCce
Q 033751 2 LADAFSQFGQ---VTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKL 78 (112)
Q Consensus 2 l~~~f~~~G~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~ 78 (112)
|+++|++||. |.. ++|++|+. |+++|||||+|.++++|++||. +||..
T Consensus 61 L~~~F~~~G~v~~v~~---------------------------v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~ 111 (136)
T 2hgl_A 61 VQNFLSDCTIHDGAAG---------------------------VHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRES 111 (136)
T ss_dssp HHHHTTTCCCSSSSTT---------------------------EEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEE
T ss_pred HHHHHHHhCCcCceeE---------------------------EEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCE
Confidence 7899999999 788 99999986 9999999999999999999999 99999
Q ss_pred eCCeeEEEEeccC
Q 033751 79 LDGRVIFVDNVRP 91 (112)
Q Consensus 79 l~g~~i~V~~a~~ 91 (112)
++|+.|.|..+.+
T Consensus 112 l~gr~i~V~~a~~ 124 (136)
T 2hgl_A 112 MGHRYIEVFKSHR 124 (136)
T ss_dssp SSSSEEEEEECCH
T ss_pred ECCEEEEEEECCh
Confidence 9999999999854
No 134
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.39 E-value=8.6e-13 Score=94.94 Aligned_cols=62 Identities=44% Similarity=0.820 Sum_probs=57.8
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. ++|++|. +.++|||||+|.++++|++|+..|||..++|
T Consensus 120 l~~~F~~~G~i~~---------------------------~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g 170 (213)
T 4f02_A 120 LYDTFSAFGNILS---------------------------CKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLND 170 (213)
T ss_dssp HHHHHGGGSCEEE---------------------------EEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred HHHHHhhcCCeEE---------------------------EEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 7899999999999 9999995 4589999999999999999999999999999
Q ss_pred eeEEEEeccCC
Q 033751 82 RVIFVDNVRPS 92 (112)
Q Consensus 82 ~~i~V~~a~~~ 92 (112)
+.|.|+++.++
T Consensus 171 ~~i~V~~a~~~ 181 (213)
T 4f02_A 171 RKVFVGRFKSR 181 (213)
T ss_dssp EECEEEECCCH
T ss_pred EEEEEEEcCCC
Confidence 99999999754
No 135
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=2.3e-12 Score=82.51 Aligned_cols=61 Identities=31% Similarity=0.574 Sum_probs=53.4
Q ss_pred HHHHhhcc--CcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCcee
Q 033751 2 LADAFSQF--GQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 79 (112)
Q Consensus 2 l~~~f~~~--G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l 79 (112)
|+++|++| |.|.+ +++ .+|||||+|.+.++|++|+..|||..+
T Consensus 32 l~~~F~~~g~g~v~~---------------------------~~~--------~~g~afV~f~~~~~A~~A~~~l~g~~~ 76 (99)
T 2cpd_A 32 IEKEFNNIKPGAVER---------------------------VKK--------IRDYAFVHFSNREDAVEAMKALNGKVL 76 (99)
T ss_dssp HHHHHHTTSTTCEEE---------------------------EEE--------CSSEEEEEESSHHHHHHHHHHHSSEEE
T ss_pred HHHHHHhcCCcceEE---------------------------EEE--------eCCeEEEEeCCHHHHHHHHHHhCCCEe
Confidence 78999999 88888 665 367999999999999999999999999
Q ss_pred CCeeEEEEeccCCCCCCC
Q 033751 80 DGRVIFVDNVRPSRRYNT 97 (112)
Q Consensus 80 ~g~~i~V~~a~~~~~~~~ 97 (112)
+|+.|.|+++++..+...
T Consensus 77 ~g~~l~v~~a~~~~~~~~ 94 (99)
T 2cpd_A 77 DGSPIEVTLAKPVDKDSS 94 (99)
T ss_dssp TTEEEEEECCCCCCCCCC
T ss_pred CCcEEEEEECCCCCCCCC
Confidence 999999999987655433
No 136
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.39 E-value=1.8e-12 Score=93.28 Aligned_cols=64 Identities=28% Similarity=0.438 Sum_probs=60.9
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||+|.. |+|++|+.+++++|||||+|.++++|++|+..+|+..+.|
T Consensus 32 L~~~F~~~G~I~~---------------------------v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g 84 (213)
T 4f02_A 32 LYEKFSPAGPILS---------------------------IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 84 (213)
T ss_dssp HHHHHGGGSCEEE---------------------------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred HHHHHHhhCCEEE---------------------------EEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCC
Confidence 7899999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEeccCC
Q 033751 82 RVIFVDNVRPS 92 (112)
Q Consensus 82 ~~i~V~~a~~~ 92 (112)
+.+++..+...
T Consensus 85 ~~i~~~~~~~~ 95 (213)
T 4f02_A 85 KPVRIMWSQRD 95 (213)
T ss_dssp EECEEEECCCC
T ss_pred ccccccccccc
Confidence 99999988644
No 137
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.38 E-value=6.2e-13 Score=88.52 Aligned_cols=60 Identities=25% Similarity=0.284 Sum_probs=53.1
Q ss_pred HHHHhhccC-cceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 2 LADAFSQFG-QVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 2 l~~~f~~~G-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
|+++|++|| .|.. +.+.. +.++|||||+|.+.++|++||..|||..++
T Consensus 45 L~~~F~~~G~~v~~---------------------------v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~ 93 (111)
T 2jvr_A 45 LKDLARENSLETTF---------------------------SSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFR 93 (111)
T ss_dssp HHHHHHHHTCCCSE---------------------------EECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEET
T ss_pred HHHHHHHhCCeeEE---------------------------EEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 789999999 8888 77643 348899999999999999999999999999
Q ss_pred CeeEEEEeccCC
Q 033751 81 GRVIFVDNVRPS 92 (112)
Q Consensus 81 g~~i~V~~a~~~ 92 (112)
|+.|.|++++..
T Consensus 94 Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 94 GSVITVERDDNP 105 (111)
T ss_dssp TEEEEEEESCC-
T ss_pred CeEEEEEECCCC
Confidence 999999998754
No 138
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.38 E-value=1.2e-12 Score=89.36 Aligned_cols=61 Identities=28% Similarity=0.551 Sum_probs=58.0
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +.+++++.+++++|+|||+|.+.++|.+|+..|||..++|
T Consensus 106 l~~~f~~~G~i~~---------------------------~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 106 LDTIFGKYGSIVQ---------------------------KNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp HHHHHTSSSCEEE---------------------------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred HHHhhhcCCcEEE---------------------------EEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 7899999999999 9999999899999999999999999999999999999987
Q ss_pred --eeEEEEec
Q 033751 82 --RVIFVDNV 89 (112)
Q Consensus 82 --~~i~V~~a 89 (112)
++|.|++|
T Consensus 159 ~~~~l~V~~A 168 (168)
T 1b7f_A 159 GSQPLSVRLA 168 (168)
T ss_dssp CSSCCEEEEC
T ss_pred CCeEEEEEeC
Confidence 99999875
No 139
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.38 E-value=1.4e-12 Score=85.53 Aligned_cols=59 Identities=27% Similarity=0.535 Sum_probs=53.3
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +.++ +|||||+|.+.++|++|+..|||..++|
T Consensus 48 L~~~F~~~G~i~~---------------------------v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (108)
T 2jvo_A 48 LNEIFGPFGPMKE---------------------------VKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFAN 92 (108)
T ss_dssp HHHHHTTTSCCCE---------------------------EEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred HHHHHHhcCCEEE---------------------------EEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 7899999999999 8876 7999999999999999999999999999
Q ss_pred eeEEEEeccCCCCC
Q 033751 82 RVIFVDNVRPSRRY 95 (112)
Q Consensus 82 ~~i~V~~a~~~~~~ 95 (112)
+.|.|+++++...+
T Consensus 93 ~~l~V~~a~~~~~r 106 (108)
T 2jvo_A 93 QPLEVVYSKLPAKR 106 (108)
T ss_dssp EECEEESCSCCC--
T ss_pred eEEEEEEecCCCCC
Confidence 99999999876543
No 140
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.38 E-value=3.6e-12 Score=86.38 Aligned_cols=65 Identities=25% Similarity=0.496 Sum_probs=59.4
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||+|.. +++++++ +++++|||||+|.++++|++|+..|||..+.|
T Consensus 17 l~~~f~~~G~i~~---------------------------v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 68 (166)
T 3md3_A 17 LKQYFQVGGPIAN---------------------------IKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIEN 68 (166)
T ss_dssp HHHHHGGGSCEEE---------------------------EEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred HHHHHHhcCCeEE---------------------------EEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCC
Confidence 7899999999999 9999997 57899999999999999999999999999999
Q ss_pred eeEEEEeccCCCC
Q 033751 82 RVIFVDNVRPSRR 94 (112)
Q Consensus 82 ~~i~V~~a~~~~~ 94 (112)
+.|.|.++.+...
T Consensus 69 ~~i~v~~~~~~~~ 81 (166)
T 3md3_A 69 NIVKINWAFQSQQ 81 (166)
T ss_dssp EECEEEECCCCCC
T ss_pred CeeEEEEcCCCCC
Confidence 9999999976544
No 141
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=2.1e-12 Score=81.37 Aligned_cols=60 Identities=30% Similarity=0.546 Sum_probs=53.8
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. ++++ +|||||+|.++++|++|+..|||..++|
T Consensus 26 l~~~F~~~G~v~~---------------------------~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g 70 (90)
T 2dnp_A 26 LRSLFERRGRVIE---------------------------CDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKG 70 (90)
T ss_dssp HHHHHHHHSCEEE---------------------------EEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred HHHHHHcCCCEEE---------------------------EEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 7899999999999 8875 3499999999999999999999999999
Q ss_pred eeEEEEeccCCCCCC
Q 033751 82 RVIFVDNVRPSRRYN 96 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~ 96 (112)
+.|.|+++++.....
T Consensus 71 ~~l~v~~a~~~~~~~ 85 (90)
T 2dnp_A 71 KRINVELSTKGQKKS 85 (90)
T ss_dssp EECEEEESCCCCCCC
T ss_pred cEEEEEECCCCCCCC
Confidence 999999998765443
No 142
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.38 E-value=8e-13 Score=90.52 Aligned_cols=60 Identities=22% Similarity=0.465 Sum_probs=55.7
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.+ ++++.+ ++|||||+|.+.++|++|+..|||..++|
T Consensus 90 l~~~F~~~G~i~~---------------------------v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g 137 (150)
T 2i2y_A 90 LERAFGYYGPLRS---------------------------VWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCG 137 (150)
T ss_dssp HHHHHHHHSCEEE---------------------------EEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSS
T ss_pred HHHHHHhhCCEEE---------------------------EEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 7899999999999 988776 68999999999999999999999999999
Q ss_pred eeEEEEeccCCC
Q 033751 82 RVIFVDNVRPSR 93 (112)
Q Consensus 82 ~~i~V~~a~~~~ 93 (112)
+.|.|+++++++
T Consensus 138 ~~l~v~~a~~~~ 149 (150)
T 2i2y_A 138 CRVRVELSNGEK 149 (150)
T ss_dssp SCCEEEECCCCC
T ss_pred eEEEEEEcCCCC
Confidence 999999998754
No 143
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.38 E-value=4.7e-13 Score=86.02 Aligned_cols=63 Identities=27% Similarity=0.525 Sum_probs=58.1
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. ++++.|+ +++++|||||+|.+.++|++|+. ++..++|
T Consensus 26 l~~~F~~~G~i~~---------------------------v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g 75 (102)
T 2xs2_A 26 IRSFFARYGSVKE---------------------------VKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHG 75 (102)
T ss_dssp HHHHHGGGSCEEE---------------------------EEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETT
T ss_pred HHHHHHhCCCeEE---------------------------EEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECC
Confidence 7899999999999 9999998 99999999999999999999998 9999999
Q ss_pred eeEEEEeccCCCC
Q 033751 82 RVIFVDNVRPSRR 94 (112)
Q Consensus 82 ~~i~V~~a~~~~~ 94 (112)
+.|.|..+.+...
T Consensus 76 ~~l~v~~a~~~~~ 88 (102)
T 2xs2_A 76 KKLKLGPAIRKQN 88 (102)
T ss_dssp EECEEEEEEECC-
T ss_pred EEEEEEECCcCcc
Confidence 9999999875543
No 144
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=1.2e-12 Score=84.97 Aligned_cols=64 Identities=27% Similarity=0.355 Sum_probs=56.3
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. .++|+.+ .+++++|||||+|.++++|++||.. |+..++|
T Consensus 32 l~~~F~~~G~v~~--------------------------~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~g 83 (104)
T 1wg5_A 32 IVQFFSGLEIVPN--------------------------GMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGH 83 (104)
T ss_dssp HHHHTTTCCEEEE--------------------------EEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSS
T ss_pred HHHHHHhcCCcce--------------------------eEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCC
Confidence 7899999999874 1667788 6899999999999999999999997 9999999
Q ss_pred eeEEEEeccCCC
Q 033751 82 RVIFVDNVRPSR 93 (112)
Q Consensus 82 ~~i~V~~a~~~~ 93 (112)
+.|.|..+.+..
T Consensus 84 r~i~v~~~~~~~ 95 (104)
T 1wg5_A 84 RYIEIFKSSRAE 95 (104)
T ss_dssp SCCEEEEECTTT
T ss_pred cEEEEEECCHHH
Confidence 999999986543
No 145
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.37 E-value=8e-13 Score=93.93 Aligned_cols=63 Identities=30% Similarity=0.501 Sum_probs=59.9
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. |.|+.++ ++.++|||||+|.+.++|++|+..|||..++|
T Consensus 105 L~~~F~~~G~I~~---------------------------v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G 156 (177)
T 2f3j_A 105 IQELFAEFGTLKK---------------------------AAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDG 156 (177)
T ss_dssp HHHHHHHTSCCSE---------------------------EEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSS
T ss_pred HHHHHHhcCCeEE---------------------------EEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 7899999999999 9999998 99999999999999999999999999999999
Q ss_pred eeEEEEeccCC
Q 033751 82 RVIFVDNVRPS 92 (112)
Q Consensus 82 ~~i~V~~a~~~ 92 (112)
+.|.|+++...
T Consensus 157 r~l~V~~a~~~ 167 (177)
T 2f3j_A 157 RPMDIQLVASQ 167 (177)
T ss_dssp SBCEEEEESSG
T ss_pred EEEEEEEecCC
Confidence 99999999754
No 146
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.6e-12 Score=86.14 Aligned_cols=60 Identities=25% Similarity=0.377 Sum_probs=55.2
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++| .|.+ ++|++|+. |+++|||||+|.++++|++|| .+|+..++|
T Consensus 33 l~~~F~~~-~v~~---------------------------v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g 82 (109)
T 2dnn_A 33 VRDFFHGL-RVDA---------------------------VHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQ 82 (109)
T ss_dssp HHHHTTTS-CCCE---------------------------EEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETT
T ss_pred HHHHhccC-CeeE---------------------------EEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECC
Confidence 78899999 7888 99999985 999999999999999999999 599999999
Q ss_pred eeEEEEeccC
Q 033751 82 RVIFVDNVRP 91 (112)
Q Consensus 82 ~~i~V~~a~~ 91 (112)
+.|.|..+.+
T Consensus 83 r~i~V~~a~~ 92 (109)
T 2dnn_A 83 RYVEVSPATE 92 (109)
T ss_dssp EEEEEEECCH
T ss_pred eEEEEEECCc
Confidence 9999988864
No 147
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.37 E-value=9.3e-13 Score=84.50 Aligned_cols=57 Identities=19% Similarity=0.330 Sum_probs=52.8
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.+ +++. +++|||||+|.+.++|++|+..|||..++|
T Consensus 44 l~~~f~~~G~i~~---------------------------~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 90 (101)
T 2la4_A 44 LIPLFQNFGFILD---------------------------FKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQG 90 (101)
T ss_dssp HHHHHHTTSCCSE---------------------------EEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred HHHHHHhCCCEEE---------------------------EEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 7899999999999 8876 467999999999999999999999999999
Q ss_pred eeEEEEeccC
Q 033751 82 RVIFVDNVRP 91 (112)
Q Consensus 82 ~~i~V~~a~~ 91 (112)
+.|.|+++++
T Consensus 91 ~~l~V~~a~~ 100 (101)
T 2la4_A 91 RNLRTGWGKE 100 (101)
T ss_dssp EECCCCBCCC
T ss_pred eEEEEEeccC
Confidence 9999999875
No 148
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.37 E-value=2.7e-12 Score=82.53 Aligned_cols=57 Identities=16% Similarity=0.448 Sum_probs=52.3
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +++ ++|||||+|.+.++|++|+..|||..++|
T Consensus 40 L~~~F~~~G~v~~---------------------------v~i--------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (97)
T 2xnq_A 40 LFRIFSPYGHIMQ---------------------------INI--------KNAFGFIQFDNPQSVRDAIEXESQEMNFG 84 (97)
T ss_dssp HHHHHGGGSCEEE---------------------------EEE--------CSSEEEEEESSHHHHHHHHHHHTTSEETT
T ss_pred HHHHHHhcCCEEE---------------------------EEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 7899999999999 777 37999999999999999999999999999
Q ss_pred eeEEEEeccCCC
Q 033751 82 RVIFVDNVRPSR 93 (112)
Q Consensus 82 ~~i~V~~a~~~~ 93 (112)
+.|.|+++++..
T Consensus 85 ~~l~V~~a~~~~ 96 (97)
T 2xnq_A 85 KKLILEVSSSNA 96 (97)
T ss_dssp EECEEEECCCCC
T ss_pred EEEEEEecCCCC
Confidence 999999997643
No 149
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.37 E-value=1.7e-12 Score=88.14 Aligned_cols=61 Identities=31% Similarity=0.577 Sum_probs=56.8
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. ++++.++.+|.++|||||+|.+.++|++|+..|||..++|
T Consensus 105 l~~~f~~~G~i~~---------------------------~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 157 (167)
T 1fxl_A 105 LEQLFSQYGRIIT---------------------------SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 157 (167)
T ss_dssp HHHHHGGGSCEEE---------------------------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred HHHHHHhcCCEeE---------------------------EEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCC
Confidence 7899999999999 9999999899999999999999999999999999999999
Q ss_pred ee--EEEEec
Q 033751 82 RV--IFVDNV 89 (112)
Q Consensus 82 ~~--i~V~~a 89 (112)
+. |.|++|
T Consensus 158 ~~~~i~v~~A 167 (167)
T 1fxl_A 158 ATEPITVKFA 167 (167)
T ss_dssp CSSCCEEEEC
T ss_pred CccceEEEeC
Confidence 65 777765
No 150
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=1.5e-12 Score=85.52 Aligned_cols=61 Identities=18% Similarity=0.279 Sum_probs=53.4
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCce--e
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKL--L 79 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~--l 79 (112)
|+++|++||.|.. +.|+++ +|||||+|.++++|++|+..|++.. +
T Consensus 32 L~~~F~~fG~V~~---------------------------v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i 78 (104)
T 1wex_A 32 LVEALEKFGTICY---------------------------VMMMPF------KRQALVEFENIDSAKECVTFAADVPVYI 78 (104)
T ss_dssp HHHHHTTTSCEEE---------------------------EEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBS
T ss_pred HHHHHHhCCCEEE---------------------------EEEECC------CCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 7899999999999 887653 6999999999999999999987654 8
Q ss_pred CCeeEEEEeccCCCCC
Q 033751 80 DGRVIFVDNVRPSRRY 95 (112)
Q Consensus 80 ~g~~i~V~~a~~~~~~ 95 (112)
+|++|.|++++++...
T Consensus 79 ~Gr~l~V~~a~~~~~~ 94 (104)
T 1wex_A 79 AGQQAFFNYSTSKRIT 94 (104)
T ss_dssp SSSBCEEEECSSSSCC
T ss_pred CCEEEEEEEccCcccc
Confidence 9999999999876544
No 151
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=4.8e-13 Score=88.13 Aligned_cols=59 Identities=17% Similarity=0.219 Sum_probs=53.3
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.+ +.|+. ++|||||+|.+.++|++|+..|||..++|
T Consensus 27 L~~~F~~~G~i~~---------------------------v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 73 (111)
T 1whx_A 27 IQETFSRFGSLGR---------------------------VLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHH 73 (111)
T ss_dssp HHHHHHTTSCEEE---------------------------EECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSS
T ss_pred HHHHHHhcCCEEE---------------------------EEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 7899999999998 77653 57899999999999999999999999999
Q ss_pred eeEEEEeccCCC
Q 033751 82 RVIFVDNVRPSR 93 (112)
Q Consensus 82 ~~i~V~~a~~~~ 93 (112)
+.|.|+++....
T Consensus 74 ~~l~V~~a~~~~ 85 (111)
T 1whx_A 74 VPLYLEWAPIGV 85 (111)
T ss_dssp SBCEEEEEETTT
T ss_pred eEEEEEECCCCc
Confidence 999999997543
No 152
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.37 E-value=1.2e-12 Score=85.84 Aligned_cols=63 Identities=19% Similarity=0.377 Sum_probs=56.7
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +.++.+ +.++|||||+|.+.++|++|+..|||..++|
T Consensus 25 l~~~F~~~G~v~~---------------------------v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 74 (115)
T 3lqv_A 25 MYDIFGKYGPIRQ---------------------------IRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSN 74 (115)
T ss_dssp HHHHHHTTSCEEE---------------------------EEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred HHHHHHhcCCeEE---------------------------EEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 7899999999999 988876 4459999999999999999999999999999
Q ss_pred eeEEEEeccCCCC
Q 033751 82 RVIFVDNVRPSRR 94 (112)
Q Consensus 82 ~~i~V~~a~~~~~ 94 (112)
+.|.|+++.+...
T Consensus 75 ~~l~v~~a~~~~~ 87 (115)
T 3lqv_A 75 RYLVVLYYNANRA 87 (115)
T ss_dssp CBCEEEECCHHHH
T ss_pred eEEEEEEecCChh
Confidence 9999999975443
No 153
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.37 E-value=1.2e-12 Score=83.70 Aligned_cols=59 Identities=17% Similarity=0.409 Sum_probs=53.1
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +.+. +|||||+|.+.++|++|+..|||..+.|
T Consensus 28 l~~~F~~~G~v~~---------------------------v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (96)
T 2kvi_A 28 LFRIFSPYGHIMQ---------------------------INIK--------NAFGFIQFDNPQSVRDAIECESQEMNFG 72 (96)
T ss_dssp HHHHHTTTCCCCE---------------------------EEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBT
T ss_pred HHHHHHhcCCEEE---------------------------EEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 7899999999999 8773 7899999999999999999999999999
Q ss_pred eeEEEEeccCCCCC
Q 033751 82 RVIFVDNVRPSRRY 95 (112)
Q Consensus 82 ~~i~V~~a~~~~~~ 95 (112)
+.|.|+++++....
T Consensus 73 ~~l~V~~a~~~~~~ 86 (96)
T 2kvi_A 73 KKLILEVSSSNARP 86 (96)
T ss_dssp TTBCEEEEECCCC-
T ss_pred cEEEEEEcCcCCCC
Confidence 99999999765543
No 154
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=3.1e-12 Score=83.81 Aligned_cols=60 Identities=17% Similarity=0.218 Sum_probs=52.1
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.+ +.|+ ++++|||||+|.++++|+.|+..++ .+.+
T Consensus 34 L~~~F~~~G~V~~---------------------------v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g 79 (100)
T 2d9o_A 34 LLRLLQKYGEVLN---------------------------LVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVD 79 (100)
T ss_dssp HHHHHHTTSCEEE---------------------------EEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSS
T ss_pred HHHHHHhcCCEEE---------------------------EEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCC
Confidence 7899999999999 8886 4689999999999999999999854 4689
Q ss_pred eeEEEEeccCCCCC
Q 033751 82 RVIFVDNVRPSRRY 95 (112)
Q Consensus 82 ~~i~V~~a~~~~~~ 95 (112)
+.|+|+++++....
T Consensus 80 ~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 80 NPLKISWLEGQPQD 93 (100)
T ss_dssp SBCEEECSSCCCCC
T ss_pred CeEEEEEccCCCCC
Confidence 99999999766543
No 155
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.36 E-value=2e-12 Score=85.04 Aligned_cols=58 Identities=21% Similarity=0.322 Sum_probs=52.4
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCce--e
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKL--L 79 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~--l 79 (112)
|+++|++||+|.. +++++ .||+|||+|.+.++|++|+..|+|.. +
T Consensus 38 L~~lF~~fG~V~~---------------------------v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i 84 (100)
T 3r27_A 38 LVEALQEFGPISY---------------------------VVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYI 84 (100)
T ss_dssp HHHHHGGGSCEEE---------------------------EEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEE
T ss_pred HHHHHhccCCEEE---------------------------EEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCcee
Confidence 7899999999999 88864 46899999999999999999999886 7
Q ss_pred CCeeEEEEeccCC
Q 033751 80 DGRVIFVDNVRPS 92 (112)
Q Consensus 80 ~g~~i~V~~a~~~ 92 (112)
.|++|.|.+|+++
T Consensus 85 ~Gr~i~V~~S~~k 97 (100)
T 3r27_A 85 AGHPAFVNYSTSQ 97 (100)
T ss_dssp TTEEEEEEECSCS
T ss_pred CCcEEEEEecccc
Confidence 8999999999764
No 156
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=2.6e-12 Score=81.66 Aligned_cols=61 Identities=23% Similarity=0.333 Sum_probs=53.3
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.+ + +.++.+++ ||||+|.++++|++|+. |||..++|
T Consensus 25 l~~~F~~~G~v~~---------------------------v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g 71 (94)
T 2e5g_A 25 LSEYFLAFGPVAS---------------------------V--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGG 71 (94)
T ss_dssp HHHHGGGTSCEEE---------------------------E--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETT
T ss_pred HHHHHHhcCCeEE---------------------------E--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECC
Confidence 7899999999988 6 66766666 99999999999999999 99999999
Q ss_pred eeEEEEeccCCCCC
Q 033751 82 RVIFVDNVRPSRRY 95 (112)
Q Consensus 82 ~~i~V~~a~~~~~~ 95 (112)
+.|.|+++.++...
T Consensus 72 ~~l~V~~a~~~~~~ 85 (94)
T 2e5g_A 72 HRLRVRPREQKEFQ 85 (94)
T ss_dssp EECCCBCSCCSCCC
T ss_pred EEEEEEECCcCCCC
Confidence 99999988655443
No 157
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.36 E-value=2.1e-12 Score=86.56 Aligned_cols=60 Identities=27% Similarity=0.476 Sum_probs=54.8
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +.+. +++|||||+|.+.++|++|+..|||..++|
T Consensus 54 L~~~F~~~G~I~~---------------------------v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g 100 (121)
T 2bz2_A 54 LRGAFSPFGNIID---------------------------LSMD------PPRNCAFVTYEKMESADQAVAELNGTQVES 100 (121)
T ss_dssp HHHHHSTTCCCSC---------------------------EEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSS
T ss_pred HHHHHHccCCEEE---------------------------EEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 7899999999999 8874 578999999999999999999999999999
Q ss_pred eeEEEEeccCCCC
Q 033751 82 RVIFVDNVRPSRR 94 (112)
Q Consensus 82 ~~i~V~~a~~~~~ 94 (112)
+.|.|+++++...
T Consensus 101 ~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 101 VQLKVNIARKQPM 113 (121)
T ss_dssp CBCEEEECCSSCC
T ss_pred eEEEEEEeCCCCC
Confidence 9999999987543
No 158
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=2.7e-12 Score=86.68 Aligned_cols=62 Identities=19% Similarity=0.307 Sum_probs=54.9
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCC--cee
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNG--KLL 79 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g--~~l 79 (112)
|+++|++||.|.+ ++|+++ +|||||+|.+.++|++|+..|++ ..+
T Consensus 48 L~~lF~~fG~V~~---------------------------v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l 94 (119)
T 2ad9_A 48 VISLGLPFGKVTN---------------------------LLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVL 94 (119)
T ss_dssp HHHHHTTTSCCCE---------------------------EEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCB
T ss_pred HHHHHHhcCCEEE---------------------------EEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 7899999999999 988876 69999999999999999999884 579
Q ss_pred CCeeEEEEeccCCCCCC
Q 033751 80 DGRVIFVDNVRPSRRYN 96 (112)
Q Consensus 80 ~g~~i~V~~a~~~~~~~ 96 (112)
.|++|.|++++++....
T Consensus 95 ~Gr~l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 95 RGQPIYIQFSNHKELKT 111 (119)
T ss_dssp TTBCCEEEECSSSSCCC
T ss_pred CCeEEEEEEccCCCCCc
Confidence 99999999998665543
No 159
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.35 E-value=3.7e-13 Score=87.81 Aligned_cols=62 Identities=16% Similarity=0.314 Sum_probs=57.3
Q ss_pred HHHHhhccCc---ceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCce
Q 033751 2 LADAFSQFGQ---VTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKL 78 (112)
Q Consensus 2 l~~~f~~~G~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~ 78 (112)
|+++|+.||. |.. ++|++|+. |+++|||||+|.+.++|++||. +|+..
T Consensus 28 l~~~F~~~g~~~~v~~---------------------------v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~ 78 (107)
T 2lmi_A 28 VLNFFSDCRIRNGENG---------------------------IHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMY 78 (107)
T ss_dssp HHHHTTTSCBTTTTTT---------------------------EECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCC
T ss_pred HHHHHHhcCCcCCcce---------------------------EEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcce
Confidence 7889999888 888 99999986 9999999999999999999999 99999
Q ss_pred eCCeeEEEEeccCC
Q 033751 79 LDGRVIFVDNVRPS 92 (112)
Q Consensus 79 l~g~~i~V~~a~~~ 92 (112)
++|+.|.|..+.+.
T Consensus 79 ~~gr~i~V~~a~~~ 92 (107)
T 2lmi_A 79 MGQRYVEVYEINNE 92 (107)
T ss_dssp SSSSCCCCEECCHH
T ss_pred eCCeEEEEEECCHH
Confidence 99999999998653
No 160
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=2e-12 Score=82.65 Aligned_cols=61 Identities=20% Similarity=0.323 Sum_probs=52.6
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. .++.+ +++|||||+|.++++|++|+..|||..++|
T Consensus 36 l~~~F~~~G~v~~----------------------------~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 83 (97)
T 2e5j_A 36 LKRALRELGSVPL----------------------------RLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGT 83 (97)
T ss_dssp HHHHHHHTTCCCS----------------------------EEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSS
T ss_pred HHHHHHhcCCEEE----------------------------EEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 7889999999832 34433 688999999999999999999999999999
Q ss_pred eeEEEEeccCCCC
Q 033751 82 RVIFVDNVRPSRR 94 (112)
Q Consensus 82 ~~i~V~~a~~~~~ 94 (112)
+.|.|++++++.+
T Consensus 84 ~~l~V~~a~~~~~ 96 (97)
T 2e5j_A 84 DTLRVALARQQRD 96 (97)
T ss_dssp SCCEEEECCCCCC
T ss_pred cEEEEEEcCCCCC
Confidence 9999999987643
No 161
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=3.1e-12 Score=79.39 Aligned_cols=56 Identities=27% Similarity=0.474 Sum_probs=51.6
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhh-CCceeC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADM-NGKLLD 80 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l-~g~~l~ 80 (112)
|+++|++||.|.. ++++++ +|||||+|.+.++|++|+..| +|..++
T Consensus 29 l~~~f~~~G~i~~---------------------------~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~ 75 (85)
T 2ytc_A 29 LRNHFYQFGEIRT---------------------------ITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVN 75 (85)
T ss_dssp HHHHHHTTSCEEE---------------------------EEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEET
T ss_pred HHHHHHhCCCEeE---------------------------EEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeEC
Confidence 7899999999999 888764 689999999999999999999 999999
Q ss_pred CeeEEEEecc
Q 033751 81 GRVIFVDNVR 90 (112)
Q Consensus 81 g~~i~V~~a~ 90 (112)
|+.|.|++++
T Consensus 76 g~~l~v~~ak 85 (85)
T 2ytc_A 76 GRRLNVKWGR 85 (85)
T ss_dssp TEECCEEECC
T ss_pred CCEEEEEecC
Confidence 9999999874
No 162
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.34 E-value=5.7e-12 Score=86.38 Aligned_cols=60 Identities=18% Similarity=0.337 Sum_probs=54.0
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccE-EEEEeCCHHHHHHHHHhhCCceeC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGY-GYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~-afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
|+++|++||+|.+ ++++.+ .+|+ |||+|.+.++|++|+..|||..+.
T Consensus 45 L~~lFs~yG~V~~---------------------------V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~ 92 (130)
T 3zzy_A 45 LHQIFSKFGTVLK---------------------------IITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIY 92 (130)
T ss_dssp HHHHHTTSSCEEE---------------------------EEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEE
T ss_pred HHHHHhCcCCEEE---------------------------EEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeec
Confidence 7899999999999 887764 2577 999999999999999999999998
Q ss_pred C--eeEEEEeccCCC
Q 033751 81 G--RVIFVDNVRPSR 93 (112)
Q Consensus 81 g--~~i~V~~a~~~~ 93 (112)
| +.|+|+++++..
T Consensus 93 g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 93 NACCTLRIDFSKLTS 107 (130)
T ss_dssp TTEEEEEEEECSCSS
T ss_pred CCCcEEEEEecCCCc
Confidence 8 899999998654
No 163
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.34 E-value=2.2e-12 Score=86.34 Aligned_cols=58 Identities=19% Similarity=0.331 Sum_probs=53.2
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.+ +.|.++. ++|++||+|.++++|++|+..|||+.++|
T Consensus 34 l~~~f~kfG~V~~---------------------------v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 34 VIEECNKHGGVIH---------------------------IYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp HHHHHTTTTCCSE---------------------------EEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred HHHHHhccCCEEE---------------------------EEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 6889999999999 8886553 58999999999999999999999999999
Q ss_pred eeEEEEecc
Q 033751 82 RVIFVDNVR 90 (112)
Q Consensus 82 ~~i~V~~a~ 90 (112)
+.|.|.++.
T Consensus 83 R~i~v~~~~ 91 (114)
T 3s6e_A 83 KMITAAYVP 91 (114)
T ss_dssp EECEEEEEC
T ss_pred EEEEEEEEc
Confidence 999999985
No 164
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.34 E-value=5e-12 Score=88.27 Aligned_cols=65 Identities=31% Similarity=0.581 Sum_probs=58.9
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +.+++++.++.++|||||+|.++++|++|+.. ++..++|
T Consensus 30 l~~~F~~~G~i~~---------------------------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g 81 (196)
T 1l3k_A 30 LRSHFEQWGTLTD---------------------------CVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDG 81 (196)
T ss_dssp HHHHHGGGSCEEE---------------------------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETT
T ss_pred HHHHHHhCCCEEE---------------------------EEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECC
Confidence 7899999999999 99999999999999999999999999999985 8999999
Q ss_pred eeEEEEeccCCCC
Q 033751 82 RVIFVDNVRPSRR 94 (112)
Q Consensus 82 ~~i~V~~a~~~~~ 94 (112)
+.|.|.++.+...
T Consensus 82 ~~l~v~~~~~~~~ 94 (196)
T 1l3k_A 82 RVVEPKRAVSRED 94 (196)
T ss_dssp EECEEEECCC---
T ss_pred EEeeeecccCccc
Confidence 9999999875543
No 165
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.33 E-value=3.9e-12 Score=84.11 Aligned_cols=58 Identities=26% Similarity=0.357 Sum_probs=50.4
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||+|.. +.|+.+ |||||+|.++++|++||..|||..++|
T Consensus 33 l~~~F~~~G~v~~---------------------------~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g 78 (115)
T 3beg_B 33 LKDHMREAGDVCY---------------------------ADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRS 78 (115)
T ss_dssp HHHHHGGGSCEEE---------------------------EEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCC
T ss_pred HHHHHHhcCCeEE---------------------------EEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 7899999999999 888766 899999999999999999999999999
Q ss_pred ee-----EEEEeccCCC
Q 033751 82 RV-----IFVDNVRPSR 93 (112)
Q Consensus 82 ~~-----i~V~~a~~~~ 93 (112)
+. |+|..+.+..
T Consensus 79 r~~~~~~i~v~~~~~~~ 95 (115)
T 3beg_B 79 HEGETAYIRVKVDGPRS 95 (115)
T ss_dssp TTSCCCBCEEEECC---
T ss_pred cEeeeEEEEeccCCCCC
Confidence 98 7777765543
No 166
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.32 E-value=4e-13 Score=92.70 Aligned_cols=64 Identities=22% Similarity=0.208 Sum_probs=57.4
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++|| |+. ++|++|+. ++++|||||+|.++++|++|| .+|+..++|
T Consensus 63 L~~~F~~~G-i~~---------------------------v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~g 112 (139)
T 2hgn_A 63 IYNFFSPLN-PVR---------------------------VHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQH 112 (139)
T ss_dssp HHHHHCSCC-CSE---------------------------EECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSS
T ss_pred HHHHHHhcC-CeE---------------------------EEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECC
Confidence 789999999 668 99999985 999999999999999999999 799999999
Q ss_pred eeEEEEeccCCCCC
Q 033751 82 RVIFVDNVRPSRRY 95 (112)
Q Consensus 82 ~~i~V~~a~~~~~~ 95 (112)
+.|.|..+.+....
T Consensus 113 R~i~V~~a~~~~~~ 126 (139)
T 2hgn_A 113 RYIELFLNSTTGAS 126 (139)
T ss_dssp CCCCCEECCCSCC-
T ss_pred EEEEEEECCCCCCC
Confidence 99999998765543
No 167
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.32 E-value=2.8e-12 Score=85.80 Aligned_cols=61 Identities=15% Similarity=0.284 Sum_probs=52.7
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCC--cee
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNG--KLL 79 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g--~~l 79 (112)
|+++|++||.|.+ ++|++ ++|||||+|.+.++|++|+..|++ ..+
T Consensus 43 L~~lF~~fG~V~~---------------------------v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l 89 (112)
T 1x4f_A 43 VLKLAEPYGKIKN---------------------------YILMR------MKSQAFIEMETREDAMAMVDHCLKKALWF 89 (112)
T ss_dssp HHTTTTTTSCCSE---------------------------EEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCS
T ss_pred HHHHHHhcCCEEE---------------------------EEEec------CCCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 7889999999999 88863 479999999999999999998864 559
Q ss_pred CCeeEEEEeccCCCCC
Q 033751 80 DGRVIFVDNVRPSRRY 95 (112)
Q Consensus 80 ~g~~i~V~~a~~~~~~ 95 (112)
+|++|.|++++.....
T Consensus 90 ~Gr~l~V~~a~~~~~~ 105 (112)
T 1x4f_A 90 QGRCVKVDLSEKYKKL 105 (112)
T ss_dssp SSSCCEEEEECSCSSS
T ss_pred CCEEEEEEECcccccc
Confidence 9999999999765443
No 168
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.32 E-value=3.6e-12 Score=90.27 Aligned_cols=64 Identities=31% Similarity=0.501 Sum_probs=57.4
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|+.||.|.. +++++++.+++++|||||+|.++++|++|+..|||..+.|
T Consensus 45 l~~~f~~~G~i~~---------------------------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 97 (216)
T 2qfj_A 45 IRQAFAPFGPIKS---------------------------IDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGG 97 (216)
T ss_dssp HHHHHGGGSCEEE---------------------------EEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-
T ss_pred HHHHHHhCCCEEE---------------------------EEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCC
Confidence 7899999999999 9999999899999999999999999999999999999999
Q ss_pred eeEEEEeccCC
Q 033751 82 RVIFVDNVRPS 92 (112)
Q Consensus 82 ~~i~V~~a~~~ 92 (112)
+.|.|.++...
T Consensus 98 ~~l~v~~~~~~ 108 (216)
T 2qfj_A 98 RNIKVGRPSNI 108 (216)
T ss_dssp CCCEEECCSCC
T ss_pred eeEEEecCCCc
Confidence 99999887543
No 169
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.31 E-value=3.9e-12 Score=94.57 Aligned_cols=63 Identities=25% Similarity=0.439 Sum_probs=57.8
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKG-KNRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~-t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
|+++|++||.|.. ++++.+.. |+.++|||||+|.++++|.+|+ .|||..++
T Consensus 228 l~~~F~~~G~v~~---------------------------v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~ 279 (292)
T 2ghp_A 228 LRESFEGFGSIEK---------------------------INIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLG 279 (292)
T ss_dssp HHHHHGGGSCEEE---------------------------EECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEET
T ss_pred HHHHHhccCCeeE---------------------------EEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEEC
Confidence 7899999999999 99999876 5999999999999999999999 99999999
Q ss_pred CeeEEEEeccCC
Q 033751 81 GRVIFVDNVRPS 92 (112)
Q Consensus 81 g~~i~V~~a~~~ 92 (112)
|+.|.|.++.++
T Consensus 280 g~~i~V~~a~~k 291 (292)
T 2ghp_A 280 NREISVSLADKK 291 (292)
T ss_dssp TEEEEEEECCCC
T ss_pred CcEEEEEEecCC
Confidence 999999999875
No 170
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.31 E-value=5.5e-12 Score=86.30 Aligned_cols=61 Identities=30% Similarity=0.416 Sum_probs=56.1
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC-
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD- 80 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~- 80 (112)
|+++|++||.|.. +++++++ +|+++|||||+|.++++|++|+..|||..+.
T Consensus 112 l~~~F~~~G~i~~---------------------------v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 163 (175)
T 3nmr_A 112 IRVMFSSFGQIEE---------------------------CRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTME 163 (175)
T ss_dssp HHHHHGGGSCEEE---------------------------EEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCT
T ss_pred HHHHHHhCCCEEE---------------------------EEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccC
Confidence 7899999999999 9999997 6999999999999999999999999998876
Q ss_pred --CeeEEEEecc
Q 033751 81 --GRVIFVDNVR 90 (112)
Q Consensus 81 --g~~i~V~~a~ 90 (112)
+++|.|++|.
T Consensus 164 g~~~~l~V~~ad 175 (175)
T 3nmr_A 164 GCSSPMVVKFAD 175 (175)
T ss_dssp TCSSCCEEEECC
T ss_pred CCCCCeEEEecC
Confidence 4999999873
No 171
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.31 E-value=5e-12 Score=89.80 Aligned_cols=61 Identities=18% Similarity=0.280 Sum_probs=54.3
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.+ +.|..+. ++|||||+|.+.++|++|+..|||..|.|
T Consensus 63 L~~~Fs~fG~V~~---------------------------V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g 111 (164)
T 1sjr_A 63 LHQIFSKFGTVLK---------------------------IITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYN 111 (164)
T ss_dssp HHHHHHHHSCEEE---------------------------EEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSS
T ss_pred HHHHHHhcCCEEE---------------------------EEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 7899999999999 8875442 57999999999999999999999999965
Q ss_pred --eeEEEEeccCCC
Q 033751 82 --RVIFVDNVRPSR 93 (112)
Q Consensus 82 --~~i~V~~a~~~~ 93 (112)
+.|+|++++++.
T Consensus 112 ~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 112 ACCTLRIDFSKLTS 125 (164)
T ss_dssp SCSCEEEEECSSSS
T ss_pred CCcEEEEEEecCCc
Confidence 999999998753
No 172
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.31 E-value=7.5e-12 Score=92.69 Aligned_cols=65 Identities=23% Similarity=0.311 Sum_probs=61.2
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. ++|+.++ +|+++|+|||+|.++++|.+|+..|||..++|
T Consensus 202 l~~~f~~~G~i~~---------------------------v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 253 (284)
T 3smz_A 202 LCRALSAVHSPTF---------------------------CQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGG 253 (284)
T ss_dssp HHHHTCSSSCCSE---------------------------EEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred HHHHhhCCCCeEE---------------------------EEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Confidence 7899999999999 9999997 89999999999999999999999999999999
Q ss_pred eeEEEEeccCCCC
Q 033751 82 RVIFVDNVRPSRR 94 (112)
Q Consensus 82 ~~i~V~~a~~~~~ 94 (112)
+.|.|+++.+...
T Consensus 254 ~~l~v~~a~~~~~ 266 (284)
T 3smz_A 254 SHLRVSFCAPGPP 266 (284)
T ss_dssp EECEEEECCSSSC
T ss_pred eEEEEEEecCCCc
Confidence 9999999987654
No 173
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=4.3e-12 Score=85.22 Aligned_cols=58 Identities=22% Similarity=0.405 Sum_probs=51.4
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCcee--
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL-- 79 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l-- 79 (112)
|+++|++||.|.+ +.|+. .+|||||+|.++++|++|+..|||+.+
T Consensus 44 L~~~F~~fG~v~~---------------------------v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~ 90 (114)
T 2cq2_A 44 LLPVLEKCGLVDA---------------------------LLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVD 90 (114)
T ss_dssp HHHHHHHHSCEEE---------------------------EECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEEC
T ss_pred HHHHHHhcCCeEE---------------------------EEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEcc
Confidence 7899999999988 77643 379999999999999999999999998
Q ss_pred ---CCeeEEEEeccCC
Q 033751 80 ---DGRVIFVDNVRPS 92 (112)
Q Consensus 80 ---~g~~i~V~~a~~~ 92 (112)
.|++|.|.++...
T Consensus 91 ~lg~g~~l~v~~a~~~ 106 (114)
T 2cq2_A 91 DLGQKITLYLNFVEKV 106 (114)
T ss_dssp TTSCEEECEEEEESCC
T ss_pred ccCCCcEEEEEecccC
Confidence 6899999998744
No 174
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=5.3e-12 Score=80.09 Aligned_cols=60 Identities=25% Similarity=0.363 Sum_probs=54.2
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEE-EEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAA-TIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
|+++|++||.|.. + .++.++.++. |||+|.+.++|++|+..|||..++
T Consensus 32 l~~~F~~~G~v~~---------------------------~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~ 80 (96)
T 2e44_A 32 LDSLLVQYGVVES---------------------------CEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLE 80 (96)
T ss_dssp HHHHHHHHSCEEE---------------------------EEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCS
T ss_pred HHHHHHhcCCeEE---------------------------EEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEEC
Confidence 7899999999999 8 4888875543 999999999999999999999999
Q ss_pred CeeEEEEeccCC
Q 033751 81 GRVIFVDNVRPS 92 (112)
Q Consensus 81 g~~i~V~~a~~~ 92 (112)
|+.|.|+++.+.
T Consensus 81 g~~l~V~~a~~~ 92 (96)
T 2e44_A 81 NFTLKVAYIPDE 92 (96)
T ss_dssp SCBCEEEECCCC
T ss_pred CcEEEEEEcCcc
Confidence 999999999875
No 175
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.28 E-value=2.3e-11 Score=90.02 Aligned_cols=66 Identities=23% Similarity=0.498 Sum_probs=62.1
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. ++++.++.+|.++|||||+|.+.++|.+|+..|||..++|
T Consensus 112 l~~~f~~~G~i~~---------------------------~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 164 (284)
T 3smz_A 112 FEELVRPFGSLER---------------------------CFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGP 164 (284)
T ss_dssp HHHHHGGGSCEEE---------------------------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred HHHHHHhcCCeeE---------------------------EEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 7899999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEeccCCCC
Q 033751 82 RVIFVDNVRPSRR 94 (112)
Q Consensus 82 ~~i~V~~a~~~~~ 94 (112)
+.|.|.++.+...
T Consensus 165 ~~i~v~~a~~~~~ 177 (284)
T 3smz_A 165 RTLYVHWTDAGQL 177 (284)
T ss_dssp EECEEEECCGGGC
T ss_pred cEEEEEECCCCCC
Confidence 9999999976554
No 176
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.27 E-value=9.3e-12 Score=89.97 Aligned_cols=59 Identities=15% Similarity=0.326 Sum_probs=54.3
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.+ ++++++ .+|||||+|.++++|++||..|||..+.|
T Consensus 22 L~~~F~~~G~v~~---------------------------v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g 69 (205)
T 3tyt_A 22 VFNVFCLYGNVEK---------------------------VKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFG 69 (205)
T ss_dssp HHHHHTTTSCEEE---------------------------EEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred HHHHHHhcCCeEE---------------------------EEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 7899999999999 988765 37999999999999999999999999999
Q ss_pred eeEEEEeccCC
Q 033751 82 RVIFVDNVRPS 92 (112)
Q Consensus 82 ~~i~V~~a~~~ 92 (112)
+.|.|.+++..
T Consensus 70 ~~l~v~~s~~~ 80 (205)
T 3tyt_A 70 QKMNVCVSKQP 80 (205)
T ss_dssp EECEEEECSCS
T ss_pred ceEEEEEccCC
Confidence 99999998643
No 177
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=4e-12 Score=85.92 Aligned_cols=61 Identities=26% Similarity=0.314 Sum_probs=55.2
Q ss_pred HHHHhhccCcc----eecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCc
Q 033751 2 LADAFSQFGQV----TEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGK 77 (112)
Q Consensus 2 l~~~f~~~G~i----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~ 77 (112)
|+++|++||.| .. ++|+.|+ +|+++|||||+|.++++|++||.. |+.
T Consensus 40 l~~~F~~~g~v~g~v~~---------------------------v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~ 90 (123)
T 2dha_A 40 VVAFFGQHCPITGGKEG---------------------------ILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKD 90 (123)
T ss_dssp HHHHHHTTSCCTTGGGG---------------------------EEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTE
T ss_pred HHHHHHhhCCccCCcce---------------------------EEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCC
Confidence 78999999986 57 8999995 899999999999999999999995 999
Q ss_pred eeCCeeEEEEeccC
Q 033751 78 LLDGRVIFVDNVRP 91 (112)
Q Consensus 78 ~l~g~~i~V~~a~~ 91 (112)
.++++.|.|..+.+
T Consensus 91 ~l~gR~i~V~~a~~ 104 (123)
T 2dha_A 91 LLGKRYIELFRSTA 104 (123)
T ss_dssp ESSSCEECCEEECH
T ss_pred eeCCeEEEEEECCH
Confidence 99999999988754
No 178
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.27 E-value=1.6e-11 Score=83.32 Aligned_cols=60 Identities=28% Similarity=0.404 Sum_probs=52.6
Q ss_pred CHHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccE-EEEEeCCHHHHHHHHHhhCCcee
Q 033751 1 MLADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGY-GYVTFSTEEEAQKALADMNGKLL 79 (112)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~-afV~f~~~~~a~~Ai~~l~g~~l 79 (112)
.|+++|++||.|.+ ++|+. + .|| |||+|.+.++|++|+..|||..|
T Consensus 41 ~L~~~Fs~yG~V~~---------------------------v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i 87 (124)
T 2e5i_A 41 VLYTVCNPVGKVQR---------------------------IVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADI 87 (124)
T ss_dssp HHHHHHTTTSCEEE---------------------------EEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHhcCCEEE---------------------------EEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 37899999999999 88754 2 286 99999999999999999999999
Q ss_pred CC--eeEEEEeccCCC
Q 033751 80 DG--RVIFVDNVRPSR 93 (112)
Q Consensus 80 ~g--~~i~V~~a~~~~ 93 (112)
.| +.|+|.+|++..
T Consensus 88 ~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 88 YAGCCTLKIEYARPTR 103 (124)
T ss_dssp BTTBSEEEEECCSCSC
T ss_pred cCCCeEEEEEEecCCc
Confidence 87 689999998664
No 179
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.27 E-value=2.6e-11 Score=76.21 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=51.4
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++| .|.. +++. +++|||||+|.++++|++|+..|||..++|
T Consensus 22 l~~~F~~~-~v~~---------------------------~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 67 (88)
T 1wg1_A 22 VHDLLKDY-DLKY---------------------------CYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG 67 (88)
T ss_dssp HHHHTCSS-CCCC---------------------------EEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETT
T ss_pred HHHHHhhC-CeEE---------------------------EEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 78899999 8888 8773 578999999999999999999999999999
Q ss_pred eeEEEEeccCC
Q 033751 82 RVIFVDNVRPS 92 (112)
Q Consensus 82 ~~i~V~~a~~~ 92 (112)
+.|.|+++...
T Consensus 68 ~~l~V~~a~~~ 78 (88)
T 1wg1_A 68 KDLIVQLQPTD 78 (88)
T ss_dssp EEEEEEECCCC
T ss_pred cEEEEEEcCCC
Confidence 99999998653
No 180
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.26 E-value=1.4e-11 Score=84.92 Aligned_cols=45 Identities=29% Similarity=0.526 Sum_probs=42.2
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeeEEEEeccCC
Q 033751 48 KGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92 (112)
Q Consensus 48 ~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 92 (112)
..++.++|||||+|.++++|.+|+..|||..++|+.|.|+++.++
T Consensus 130 ~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 130 SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 458899999999999999999999999999999999999999765
No 181
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=1.4e-11 Score=80.64 Aligned_cols=56 Identities=20% Similarity=0.237 Sum_probs=50.3
Q ss_pred HHHHhhcc-CcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 2 LADAFSQF-GQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 2 l~~~f~~~-G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
|+++|++| |+|.+ + ++ |+|||.|.+.++|++|++.|||..+.
T Consensus 30 L~~lF~~yGG~Vl~---------------------------V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~ 72 (96)
T 2diu_A 30 LRRLSDNCGGKVLS---------------------------I-------TG---CSAILRFINQDSAERAQKRMENEDVF 72 (96)
T ss_dssp HHHHHHTTTCCEEE---------------------------C-------CT---TCEEEEESSHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHcCCeeEE---------------------------E-------ec---CEEEEEECCHHHHHHHHHHhcCCccC
Confidence 67899999 59988 4 33 99999999999999999999999999
Q ss_pred CeeEEEEeccCCCC
Q 033751 81 GRVIFVDNVRPSRR 94 (112)
Q Consensus 81 g~~i~V~~a~~~~~ 94 (112)
||+|+|++|+...+
T Consensus 73 gr~i~v~~A~~~sd 86 (96)
T 2diu_A 73 GNRIIVSFTPKNRE 86 (96)
T ss_dssp SSCCEEESSCCSCC
T ss_pred CceEEEEecCCCcc
Confidence 99999999986654
No 182
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.22 E-value=3.8e-11 Score=86.21 Aligned_cols=61 Identities=18% Similarity=0.188 Sum_probs=55.5
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||+|.. ++|+++. +++++|||||+|.++++|++|+..+ +..++|
T Consensus 126 L~~~F~~~G~v~~---------------------------v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~G 176 (193)
T 2voo_A 126 IKEWLEDKGQVLN---------------------------IQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKE 176 (193)
T ss_dssp HHHHHTTSCCEEE---------------------------EEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETT
T ss_pred HHHHHhcCCCEEE---------------------------EEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECC
Confidence 7899999999999 9999987 5899999999999999999999865 569999
Q ss_pred eeEEEEeccC
Q 033751 82 RVIFVDNVRP 91 (112)
Q Consensus 82 ~~i~V~~a~~ 91 (112)
+.|.|.++..
T Consensus 177 r~l~V~~~~~ 186 (193)
T 2voo_A 177 TDLLILFKDD 186 (193)
T ss_dssp EECEEEETTT
T ss_pred EEEEEEEhHH
Confidence 9999998754
No 183
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.22 E-value=3.3e-11 Score=89.11 Aligned_cols=62 Identities=24% Similarity=0.386 Sum_probs=55.9
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|.++|++||.|.+ +++++ +++++|||||+|.+.++|++|+..|||..+.|
T Consensus 30 L~~~F~~~G~i~~---------------------------v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 79 (282)
T 3pgw_A 30 LYAIFSQFGQILD---------------------------ILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYD 79 (282)
T ss_pred HHHHHhccCCeEE---------------------------EEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCC
Confidence 4589999999999 87765 67899999999999999999999999999999
Q ss_pred eeEEEEeccCCC
Q 033751 82 RVIFVDNVRPSR 93 (112)
Q Consensus 82 ~~i~V~~a~~~~ 93 (112)
+.|.|++++...
T Consensus 80 ~~l~v~~a~~~~ 91 (282)
T 3pgw_A 80 KPMRIQYAKTDS 91 (282)
T ss_pred cEEEEEEeccCc
Confidence 999999986544
No 184
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.21 E-value=3.2e-11 Score=82.42 Aligned_cols=66 Identities=27% Similarity=0.425 Sum_probs=58.3
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCC--CcccEEEEEeCCHHHHHHHHHhhCCcee
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKN--RSKGYGYVTFSTEEEAQKALADMNGKLL 79 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~--~~rG~afV~f~~~~~a~~Ai~~l~g~~l 79 (112)
|+++|++||+|.. +++++++.++ +++|||||+|.++++|++|+..|||..+
T Consensus 20 l~~~F~~~G~i~~---------------------------v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~ 72 (175)
T 3nmr_A 20 LRELFEQYGAVYE---------------------------INVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKV 72 (175)
T ss_dssp HHHHHHTTSCEEE---------------------------EEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCC
T ss_pred HHHHHHhCCCEEE---------------------------EEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEE
Confidence 7899999999999 9999999877 8999999999999999999999999887
Q ss_pred C---CeeEEEEeccCCCC
Q 033751 80 D---GRVIFVDNVRPSRR 94 (112)
Q Consensus 80 ~---g~~i~V~~a~~~~~ 94 (112)
. ++.+.+..+.+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~ 90 (175)
T 3nmr_A 73 LPGMHHPIQMKPADSEKN 90 (175)
T ss_dssp CTTCSSCCEEEECGGGCC
T ss_pred ccCCccceEEcccccccc
Confidence 6 67888887765443
No 185
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.18 E-value=1.1e-11 Score=84.25 Aligned_cols=60 Identities=25% Similarity=0.359 Sum_probs=53.7
Q ss_pred HHHHhhccCcce--ecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCcee
Q 033751 2 LADAFSQFGQVT--EDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 79 (112)
Q Consensus 2 l~~~f~~~G~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l 79 (112)
|+++|++| .|. . |+|++|+. |+++|||||+|.++++|++||. +++..+
T Consensus 59 L~~~F~~~-~i~~~~---------------------------v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l 108 (126)
T 2hgm_A 59 IVQFFSGL-EIVPNG---------------------------ITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERI 108 (126)
T ss_dssp HHHHTTTS-CEEEEE---------------------------EECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCB
T ss_pred HHHHHhcC-CceeeE---------------------------EEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEE
Confidence 78899999 566 7 89999986 9999999999999999999998 578999
Q ss_pred CCeeEEEEeccC
Q 033751 80 DGRVIFVDNVRP 91 (112)
Q Consensus 80 ~g~~i~V~~a~~ 91 (112)
+|+.|.|..+.+
T Consensus 109 ~gR~I~V~~a~~ 120 (126)
T 2hgm_A 109 GHRYIEVFKSSQ 120 (126)
T ss_dssp TTBCCCCEEECH
T ss_pred CCEEEEEEECCH
Confidence 999999988754
No 186
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.18 E-value=2.8e-11 Score=82.51 Aligned_cols=62 Identities=29% Similarity=0.628 Sum_probs=56.5
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||+|.. +++++++.+|+++|||||+|.++++|++|+.. +..++|
T Consensus 20 l~~~F~~~G~i~~---------------------------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g 70 (167)
T 2cjk_A 20 LREYFGKYGTVTD---------------------------LKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDG 70 (167)
T ss_dssp HHHHHTTTCCEEE---------------------------EECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETT
T ss_pred HHHHHHhCCCEEE---------------------------EEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCC
Confidence 7899999999999 99999998999999999999999999999984 578999
Q ss_pred eeEEEEeccCC
Q 033751 82 RVIFVDNVRPS 92 (112)
Q Consensus 82 ~~i~V~~a~~~ 92 (112)
+.|.|.++.+.
T Consensus 71 ~~i~v~~~~~~ 81 (167)
T 2cjk_A 71 KVIDPKRAIPR 81 (167)
T ss_dssp EECCCEECCCH
T ss_pred eEcccccccch
Confidence 99999887543
No 187
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.17 E-value=5.6e-11 Score=75.36 Aligned_cols=57 Identities=28% Similarity=0.546 Sum_probs=45.9
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCcee--
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL-- 79 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l-- 79 (112)
|+++|++||+|.+ ++|+++ ++|||||+|.++++|++ ++|..+
T Consensus 28 L~~~F~~~G~i~~---------------------------v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~ 71 (89)
T 3d2w_A 28 LQQFFCQYGEVVD---------------------------VFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLII 71 (89)
T ss_dssp HHHHHTTTSCEEE---------------------------EECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEE
T ss_pred HHHHHhccCCEEE---------------------------EEEeeC-----CCCEEEEEECCHHHHHH----HcCCCccc
Confidence 7899999999999 888774 78999999999999983 566664
Q ss_pred CCeeEEEEeccCCCC
Q 033751 80 DGRVIFVDNVRPSRR 94 (112)
Q Consensus 80 ~g~~i~V~~a~~~~~ 94 (112)
.|+.|.|.++.++..
T Consensus 72 ~g~~v~v~~a~~k~~ 86 (89)
T 3d2w_A 72 KGISVHISNAEPKHN 86 (89)
T ss_dssp TTEEEEEEECC----
T ss_pred CCEEEEEEEcCCCCc
Confidence 599999999986543
No 188
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.16 E-value=5.1e-11 Score=89.02 Aligned_cols=59 Identities=24% Similarity=0.398 Sum_probs=52.5
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCcee--
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL-- 79 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l-- 79 (112)
|+++|++||+|.+ ++|+. ++|||||+|.+.++|+.|+.+|+|..+
T Consensus 160 L~~~F~~fG~I~~---------------------------v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l~~ 206 (240)
T 3u1l_A 160 IRFVFSRLGDIDR---------------------------IRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTLLL 206 (240)
T ss_dssp HHHHHHTTSCEEE---------------------------EEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHccCCEEE---------------------------EEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEEec
Confidence 7899999999999 88875 479999999999999999999999999
Q ss_pred ----------CCeeEEEEeccCCC
Q 033751 80 ----------DGRVIFVDNVRPSR 93 (112)
Q Consensus 80 ----------~g~~i~V~~a~~~~ 93 (112)
.|+.|.|++|++..
T Consensus 207 ~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TTSTTGGGGGGSCCCEEEECC---
T ss_pred cccccccccCCCCEEEEEEccCCC
Confidence 89999999997653
No 189
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=2.4e-11 Score=76.13 Aligned_cols=63 Identities=25% Similarity=0.497 Sum_probs=49.6
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||+|.. ++|+.+ ++|||||+|.++++|++|+.. ...+.+
T Consensus 22 l~~~F~~~G~i~~---------------------------v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g 67 (88)
T 1wf0_A 22 LREFFSQYGDVMD---------------------------VFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKG 67 (88)
T ss_dssp HHHHSTTTSCCCE---------------------------EECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETT
T ss_pred HHHHHHHcCCeeE---------------------------EEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCC
Confidence 7899999999999 888654 789999999999999764321 234589
Q ss_pred eeEEEEeccCCCCCCCC
Q 033751 82 RVIFVDNVRPSRRYNTD 98 (112)
Q Consensus 82 ~~i~V~~a~~~~~~~~~ 98 (112)
+.|.|.++.++....++
T Consensus 68 ~~l~v~~a~~~~~~~~~ 84 (88)
T 1wf0_A 68 ISVHISNAEPKHNSNSG 84 (88)
T ss_dssp EEEEEECCCCCCCCCSC
T ss_pred EEEEEEecCCCCCCCCC
Confidence 99999999876655443
No 190
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.13 E-value=1e-10 Score=72.55 Aligned_cols=40 Identities=20% Similarity=0.537 Sum_probs=35.9
Q ss_pred EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeeEEEEe
Q 033751 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 88 (112)
Q Consensus 42 ~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~ 88 (112)
+++.++ +|||||+|.++++|++|+ .|||..++|+.|.|+.
T Consensus 47 ~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 47 VQINQD------KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp EEECSS------SSEEEEEESSHHHHHHHG-GGTTCEETTEECEEEC
T ss_pred EEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEEeC
Confidence 777544 799999999999999999 9999999999999873
No 191
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.13 E-value=1.3e-10 Score=83.83 Aligned_cols=62 Identities=24% Similarity=0.414 Sum_probs=56.1
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCC----CCCcccEEEEEeCCHHHHHHHHHhhCCc
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKG----KNRSKGYGYVTFSTEEEAQKALADMNGK 77 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~----t~~~rG~afV~f~~~~~a~~Ai~~l~g~ 77 (112)
|.+.|++||.|.. +.|+++.. +++++|++||+|.+.++|++|+..|||+
T Consensus 146 l~~e~~~~G~v~~---------------------------~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr 198 (222)
T 3dxb_A 146 VTEECGKFGAVNR---------------------------VIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR 198 (222)
T ss_dssp HHHHHTTTSCEEE---------------------------EEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred HHHHHHccCCeEE---------------------------EEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCc
Confidence 6788999999999 88886643 4589999999999999999999999999
Q ss_pred eeCCeeEEEEecc
Q 033751 78 LLDGRVIFVDNVR 90 (112)
Q Consensus 78 ~l~g~~i~V~~a~ 90 (112)
.++||.|.+.++.
T Consensus 199 ~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 199 WFAGRKVVAEVYD 211 (222)
T ss_dssp BSSSSBCEEEECC
T ss_pred eECCeEEEEEEcC
Confidence 9999999999875
No 192
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.12 E-value=1.6e-10 Score=85.40 Aligned_cols=58 Identities=21% Similarity=0.357 Sum_probs=53.3
Q ss_pred CHHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 1 MLADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
.|+++|++||.|.+ ++++.++ +|||||+|.+.++|.+|+..|||..++
T Consensus 223 ~l~~~F~~~G~i~~---------------------------v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~ 270 (282)
T 3pgw_A 223 MLSMLFNQFPGFKE---------------------------VRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKIT 270 (282)
T ss_pred HHHHHHHhcCCeEE---------------------------EEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeC
Confidence 37899999999999 8888654 589999999999999999999999999
Q ss_pred -CeeEEEEecc
Q 033751 81 -GRVIFVDNVR 90 (112)
Q Consensus 81 -g~~i~V~~a~ 90 (112)
|+.|+|++++
T Consensus 271 ~g~~l~v~~ak 281 (282)
T 3pgw_A 271 QNNAMKISFAK 281 (282)
T ss_pred CCCEEEEEEec
Confidence 9999999986
No 193
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.11 E-value=1.2e-10 Score=86.43 Aligned_cols=66 Identities=15% Similarity=0.328 Sum_probs=53.3
Q ss_pred HHHHhhccC-cceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 2 LADAFSQFG-QVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 2 l~~~f~~~G-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
|+++|++|| .|.. +.++.++. +.++|||||+|.+.++|.+|+..|||..++
T Consensus 134 l~~~f~~~G~~i~~---------------------------v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 185 (292)
T 2ghp_A 134 IRDLLQDINVVALS---------------------------IRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIE 185 (292)
T ss_dssp HHHHHHHTTCCCCE---------------------------EECC--------CCEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred HHHHHHHhCCCeEE---------------------------EEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 789999999 9999 99998874 889999999999999999999999999999
Q ss_pred CeeEEEEeccCCCCC
Q 033751 81 GRVIFVDNVRPSRRY 95 (112)
Q Consensus 81 g~~i~V~~a~~~~~~ 95 (112)
|+.|.|.++.+....
T Consensus 186 g~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 186 GYTLVTKVSNPLEKS 200 (292)
T ss_dssp TEECEEEECCCC---
T ss_pred CcEEEEEECCCCccc
Confidence 999999999765443
No 194
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=1.8e-10 Score=74.68 Aligned_cols=55 Identities=36% Similarity=0.498 Sum_probs=50.9
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|.+.|++||.|.. ++++.|+ +||+|.+.++|.+||. |||.+++|
T Consensus 32 L~~~F~~~G~Vi~---------------------------vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 32 LLQQFASFGEVIL---------------------------IRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp HHHHHHTTCCEEE---------------------------EEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred HHHHHHhCCCeEE---------------------------EEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 6789999999999 9998875 8999999999999998 99999999
Q ss_pred eeEEEEeccCC
Q 033751 82 RVIFVDNVRPS 92 (112)
Q Consensus 82 ~~i~V~~a~~~ 92 (112)
+.|+|+++++.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999998764
No 195
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.11 E-value=2.2e-10 Score=83.04 Aligned_cols=59 Identities=27% Similarity=0.438 Sum_probs=54.8
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +++++++ +|||||+|.++++|++|+..|||..+.|
T Consensus 52 L~~~F~~~G~i~~---------------------------v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g 99 (229)
T 2adc_A 52 LFILFGVYGDVQR---------------------------VKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHG 99 (229)
T ss_dssp HHHHHHHHTCEEE---------------------------EEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSS
T ss_pred HHHHHHhCCCeEE---------------------------EEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 7899999999999 9998875 7899999999999999999999999999
Q ss_pred eeEEEEeccCC
Q 033751 82 RVIFVDNVRPS 92 (112)
Q Consensus 82 ~~i~V~~a~~~ 92 (112)
+.|.|.++++.
T Consensus 100 ~~l~v~~a~~~ 110 (229)
T 2adc_A 100 KPIRITLSKHQ 110 (229)
T ss_dssp SBCEEECCSCC
T ss_pred eEEEEEEecCc
Confidence 99999998754
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.10 E-value=2.8e-10 Score=84.09 Aligned_cols=64 Identities=36% Similarity=0.626 Sum_probs=56.8
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhC-CceeC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMN-GKLLD 80 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~-g~~l~ 80 (112)
|+++|++||.|.. +.++.|. +|+++|||||+|.+.++|.+|+..|| |..+.
T Consensus 113 l~~~F~~~G~i~~---------------------------v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~ 164 (261)
T 3sde_A 113 LEQAFSQFGPVEK---------------------------AVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLL 164 (261)
T ss_dssp HHHHHGGGSCEEE---------------------------EEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEES
T ss_pred HHHHHHhcCCeEE---------------------------EEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEe
Confidence 7899999999999 9999994 89999999999999999999999995 44554
Q ss_pred ---CeeEEEEeccCCC
Q 033751 81 ---GRVIFVDNVRPSR 93 (112)
Q Consensus 81 ---g~~i~V~~a~~~~ 93 (112)
+++|.|+++.+..
T Consensus 165 ~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 165 TTTPRPVIVEPMEQFD 180 (261)
T ss_dssp SSSCCBCEEEECCCEE
T ss_pred cCCCceEEEeeccccC
Confidence 8999999987543
No 197
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.09 E-value=1.2e-10 Score=81.85 Aligned_cols=59 Identities=27% Similarity=0.438 Sum_probs=54.5
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.+ +++++++ +|||||+|.++++|++|+..|||..+.|
T Consensus 21 l~~~F~~~G~i~~---------------------------v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g 68 (198)
T 1qm9_A 21 LFILFGVYGDVQR---------------------------VKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHG 68 (198)
T ss_dssp HHHHHHTTCCCSE---------------------------EECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHhcCCEEE---------------------------EEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecC
Confidence 7899999999999 8887774 7899999999999999999999999999
Q ss_pred eeEEEEeccCC
Q 033751 82 RVIFVDNVRPS 92 (112)
Q Consensus 82 ~~i~V~~a~~~ 92 (112)
+.|.|.++.+.
T Consensus 69 ~~l~v~~a~~~ 79 (198)
T 1qm9_A 69 KPIRITLSKHQ 79 (198)
T ss_dssp CCCEEEECCCC
T ss_pred eEEEEEEecCC
Confidence 99999998754
No 198
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=3.1e-10 Score=74.53 Aligned_cols=58 Identities=19% Similarity=0.339 Sum_probs=45.4
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCC---CCcccEEEEEeCCHHHHHHHHHhhCCce
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGK---NRSKGYGYVTFSTEEEAQKALADMNGKL 78 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t---~~~rG~afV~f~~~~~a~~Ai~~l~g~~ 78 (112)
|+++|++||+|.. .++.++.+ |+++|||||+|.++++|++||..|+ .
T Consensus 25 L~~~F~~~G~i~~----------------------------~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~ 74 (114)
T 2dnl_A 25 ITASFRRFGPLVV----------------------------DWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--E 74 (114)
T ss_dssp HHHHTTTTCCCCE----------------------------ECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--E
T ss_pred HHHHHHhcCCEEE----------------------------EEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--h
Confidence 7899999999853 45566656 7999999999999999999999883 3
Q ss_pred eCCeeEEEEec
Q 033751 79 LDGRVIFVDNV 89 (112)
Q Consensus 79 l~g~~i~V~~a 89 (112)
++|+.+.+..+
T Consensus 75 ~~G~~~~~~~~ 85 (114)
T 2dnl_A 75 EDGKLYLCVSS 85 (114)
T ss_dssp ETTEEEEEECC
T ss_pred cCCcEEEeccC
Confidence 55555555443
No 199
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.03 E-value=3.5e-10 Score=81.62 Aligned_cols=59 Identities=12% Similarity=0.208 Sum_probs=51.4
Q ss_pred HHHHhhccCcc--eecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCcee
Q 033751 2 LADAFSQFGQV--TEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 79 (112)
Q Consensus 2 l~~~f~~~G~i--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l 79 (112)
|+++|++||.| .. ++++.+. +..+|+|||+|.+.++|.+||..|||..+
T Consensus 140 L~~~F~~~G~v~~~~---------------------------v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~ 190 (205)
T 3tyt_A 140 FFEICDELGVKRPTS---------------------------VKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQM 190 (205)
T ss_dssp HHHHHHHHTCCCCSE---------------------------EEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred HHHHHHhcCCcceEE---------------------------EEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCc
Confidence 78999999999 77 8887775 56679999999999999999999999999
Q ss_pred CCe----eEEEEec
Q 033751 80 DGR----VIFVDNV 89 (112)
Q Consensus 80 ~g~----~i~V~~a 89 (112)
+|+ ++.|++|
T Consensus 191 ~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 191 KNPNGPYPYTLKLC 204 (205)
T ss_dssp CCSSSSSCEECEEE
T ss_pred cCCCCCcceEEEec
Confidence 876 5666664
No 200
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.03 E-value=2.3e-10 Score=80.42 Aligned_cols=59 Identities=22% Similarity=0.273 Sum_probs=53.0
Q ss_pred HHHHhhccC-cceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 2 LADAFSQFG-QVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 2 l~~~f~~~G-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
|+++|++|| .|.. ++++.+ .+|+|||+|.++++|.+|+..|||..++
T Consensus 137 l~~~f~~~G~~v~~---------------------------v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~ 184 (198)
T 1qm9_A 137 LKVLFSSNGGVVKG---------------------------FKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLG 184 (198)
T ss_dssp HHHHHHHTTSCCCE---------------------------EEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCS
T ss_pred HHHHHHHcCCCceE---------------------------EEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccC
Confidence 789999999 9988 887554 3799999999999999999999999999
Q ss_pred -CeeEEEEeccCC
Q 033751 81 -GRVIFVDNVRPS 92 (112)
Q Consensus 81 -g~~i~V~~a~~~ 92 (112)
|+.|.|+++++.
T Consensus 185 ~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 185 ENHHLRVSFSKST 197 (198)
T ss_dssp SCCSCCEEEECCC
T ss_pred CCCeEEEEeeccc
Confidence 999999998763
No 201
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.02 E-value=1.2e-10 Score=80.23 Aligned_cols=48 Identities=25% Similarity=0.466 Sum_probs=42.0
Q ss_pred eeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeeEEEEeccCCCC
Q 033751 46 MDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94 (112)
Q Consensus 46 ~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~~ 94 (112)
.+..+++++|||||+|.++++|++|+. |||..+.|+.|.|.++.+...
T Consensus 46 ~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~~~~~ 93 (175)
T 1fje_B 46 VDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDS 93 (175)
T ss_dssp CEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCCCSSC
T ss_pred EECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCCCccc
Confidence 344578899999999999999999995 999999999999999976543
No 202
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.99 E-value=3.5e-10 Score=78.93 Aligned_cols=42 Identities=17% Similarity=0.472 Sum_probs=38.1
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeeEEEEeccCC
Q 033751 50 KNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92 (112)
Q Consensus 50 t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 92 (112)
.++++|||||+|.++++|++|+ .|||..++|+.|.|.++.+.
T Consensus 47 ~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 47 INQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDY 88 (198)
T ss_dssp EETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCCCC
T ss_pred ecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCCCC
Confidence 3567899999999999999999 89999999999999998654
No 203
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.99 E-value=8.2e-10 Score=80.01 Aligned_cols=59 Identities=22% Similarity=0.273 Sum_probs=53.0
Q ss_pred HHHHhhccC-cceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 2 LADAFSQFG-QVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 2 l~~~f~~~G-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
|+++|++|| .|.. ++++.+ .+|+|||+|.+.++|.+|+..|||..++
T Consensus 168 l~~~f~~~G~~i~~---------------------------v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 215 (229)
T 2adc_A 168 LKVLFSSNGGVVKG---------------------------FKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLG 215 (229)
T ss_dssp HHHHHHTTSCCEEE---------------------------EEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred HHHHHHHcCCCeeE---------------------------EEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccC
Confidence 789999999 9988 877543 3689999999999999999999999999
Q ss_pred -CeeEEEEeccCC
Q 033751 81 -GRVIFVDNVRPS 92 (112)
Q Consensus 81 -g~~i~V~~a~~~ 92 (112)
|+.|.|+++++.
T Consensus 216 ~g~~l~v~~a~~~ 228 (229)
T 2adc_A 216 ENHHLRVSFSKST 228 (229)
T ss_dssp SSCBCEEEECSSC
T ss_pred CCCeEEEEEecCC
Confidence 999999999763
No 204
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.94 E-value=2.4e-09 Score=79.08 Aligned_cols=58 Identities=21% Similarity=0.471 Sum_probs=52.7
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|+++|++||.|.. +.+.+ .+|||||+|.++++|++|+..+||..+.|
T Consensus 39 l~~~F~~~G~i~~---------------------------v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g 85 (261)
T 3sde_A 39 FKRLFERYGEPSE---------------------------VFINR------DRGFGFIRLESRTLAEIAKAELDGTILKS 85 (261)
T ss_dssp HHHHTGGGCCCSE---------------------------EEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred HHHHHHhcCCEEE---------------------------EEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECC
Confidence 7899999999999 88753 46999999999999999999999999999
Q ss_pred eeEEEEeccCC
Q 033751 82 RVIFVDNVRPS 92 (112)
Q Consensus 82 ~~i~V~~a~~~ 92 (112)
+.|.|.++.+.
T Consensus 86 ~~l~v~~a~~~ 96 (261)
T 3sde_A 86 RPLRIRFATHG 96 (261)
T ss_dssp EECEEEECCCS
T ss_pred ceeEeeecccC
Confidence 99999998753
No 205
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=2e-09 Score=70.14 Aligned_cols=53 Identities=21% Similarity=0.375 Sum_probs=49.0
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
|.+.|++||.|.. ++++.|+ +||+|.+.++|.+||. |||.+++|
T Consensus 41 L~~~F~~~G~Vil---------------------------vr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 41 LMQTLGSYGTIVL---------------------------VRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp HHHHHHHHSCCSE---------------------------EEEETTE--------EEEECSCSHHHHHHHH-GGGSEETT
T ss_pred HHHHHHHCCCEEE---------------------------EEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCC
Confidence 6789999999999 9998885 9999999999999999 99999999
Q ss_pred eeEEEEecc
Q 033751 82 RVIFVDNVR 90 (112)
Q Consensus 82 ~~i~V~~a~ 90 (112)
|.|+|++-.
T Consensus 85 r~L~V~~k~ 93 (95)
T 1ufw_A 85 RAVKISGPS 93 (95)
T ss_dssp EEEEEECCC
T ss_pred eEEEEeccC
Confidence 999998754
No 206
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.83 E-value=1e-08 Score=69.92 Aligned_cols=42 Identities=17% Similarity=0.500 Sum_probs=37.5
Q ss_pred CCcccEEEEEeCCHHHHHHHHHhhCCceeCCeeEEEEeccCCC
Q 033751 51 NRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93 (112)
Q Consensus 51 ~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~~ 93 (112)
++++|||||+|.++++|++|+ .+||..++|+.|.|.++.+..
T Consensus 48 ~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~ 89 (172)
T 2g4b_A 48 NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQ 89 (172)
T ss_dssp ETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSCC
T ss_pred cCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcccC
Confidence 456899999999999999999 899999999999999876543
No 207
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.79 E-value=8.6e-09 Score=80.48 Aligned_cols=56 Identities=25% Similarity=0.475 Sum_probs=46.9
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeC-
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD- 80 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~- 80 (112)
|+++|++||+|.. +.+.. +||||||+|.+.++|++|+..|||..+.
T Consensus 37 L~~~F~~~G~V~~---------------------------v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~ 83 (345)
T 3tht_A 37 LLPVLEKCGLVDA---------------------------LLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVD 83 (345)
T ss_dssp HHHHHHTTSCEEE---------------------------EECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEEC
T ss_pred HHHHHHhcCCeEE---------------------------EEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcccc
Confidence 7899999999988 66532 5799999999999999999999999983
Q ss_pred --Ce--eEEEEecc
Q 033751 81 --GR--VIFVDNVR 90 (112)
Q Consensus 81 --g~--~i~V~~a~ 90 (112)
|+ .+.+.++.
T Consensus 84 ~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 84 DLGQKITLYLNFVE 97 (345)
T ss_dssp TTSCEEECEEEECS
T ss_pred ccCCceEEEEEEee
Confidence 44 56777763
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.20 E-value=1.8e-06 Score=58.28 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=48.7
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCC-HHHHHHHHHhhC--Cce
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFST-EEEAQKALADMN--GKL 78 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~-~~~a~~Ai~~l~--g~~ 78 (112)
|+++|++||+|.. |.++++.. .|||.|.+ +++|..|+..+| +..
T Consensus 36 Lke~F~~~G~V~~---------------------------Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~ 82 (121)
T 1owx_A 36 LHILFSNHGEIKW---------------------------IDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQ 82 (121)
T ss_dssp HHHHTCSSCCEEE---------------------------EECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBC
T ss_pred HHHHHHhcCCEEE---------------------------EEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcE
Confidence 7899999999999 98888764 49999999 899999999995 677
Q ss_pred eCCeeEEEEecc
Q 033751 79 LDGRVIFVDNVR 90 (112)
Q Consensus 79 l~g~~i~V~~a~ 90 (112)
|.|..+.+++..
T Consensus 83 i~g~~~~~evL~ 94 (121)
T 1owx_A 83 LRNKEVTWEVLE 94 (121)
T ss_dssp TTSSSEEEEECC
T ss_pred EeCcEEEEEECC
Confidence 889988887754
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.36 E-value=0.0006 Score=45.52 Aligned_cols=42 Identities=24% Similarity=0.333 Sum_probs=36.8
Q ss_pred EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCCeeEEEEec
Q 033751 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89 (112)
Q Consensus 42 ~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a 89 (112)
+.+..|- |-|+|+|.+...|-+|.-+|||.+++|+.|+|--.
T Consensus 56 I~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 56 ILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp EEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred EEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 7777774 57999999999999999999999999999998643
No 210
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=97.13 E-value=0.00054 Score=46.19 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=29.8
Q ss_pred EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCce
Q 033751 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKL 78 (112)
Q Consensus 42 ~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~ 78 (112)
++|+++. .+++|||||+|.++++|++|+..+++..
T Consensus 3 ~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 3 YKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp EEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccC
Confidence 5777885 4799999999999999999999887643
No 211
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.93 E-value=0.00057 Score=45.96 Aligned_cols=41 Identities=20% Similarity=0.167 Sum_probs=37.6
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHhh-CCceeCCeeEEEEeccC
Q 033751 50 KNRSKGYGYVTFSTEEEAQKALADM-NGKLLDGRVIFVDNVRP 91 (112)
Q Consensus 50 t~~~rG~afV~f~~~~~a~~Ai~~l-~g~~l~g~~i~V~~a~~ 91 (112)
..+.+|+++++|.+.++|++|+..+ ||..++| .+.++.+..
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 4678999999999999999999999 9999999 999998764
No 212
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.69 E-value=0.011 Score=38.79 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=33.9
Q ss_pred EEEEEeCCHHHHHHHHHhhCCceeCCeeEEEEeccCC
Q 033751 56 YGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92 (112)
Q Consensus 56 ~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 92 (112)
-..|.|.++++|.+|-..||+..++|++++|-++.+.
T Consensus 48 Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 48 RVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp EEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred EEEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 4579999999999999999999999999999999844
No 213
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.43 E-value=0.017 Score=38.71 Aligned_cols=55 Identities=18% Similarity=0.380 Sum_probs=43.7
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhCCceeCC
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~g~~l~g 81 (112)
+.+.|++||.|.+ ... . ....+-.|.|.+..+|++||. .||..+++
T Consensus 40 VL~~F~~~G~Iv~---------------------------~~~--~----~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g 85 (119)
T 1wwh_A 40 ILLQFAQYGNILK---------------------------HVM--S----NTGNWMHIRYQSKLQARKALS-KDGRIFGE 85 (119)
T ss_dssp HHHHHHTTSCEEE---------------------------EEE--C----SSSSEEEEEESSHHHHHHHHT-TTTCEETT
T ss_pred HHHHHHhhCcEEE---------------------------ecc--C----CCCCeEEEEeCCHHHHHHHHH-hCCeEecC
Confidence 5688999999988 443 1 123588999999999999998 79999985
Q ss_pred -eeEEEEecc
Q 033751 82 -RVIFVDNVR 90 (112)
Q Consensus 82 -~~i~V~~a~ 90 (112)
-.|-|..+.
T Consensus 86 ~~mIGV~p~~ 95 (119)
T 1wwh_A 86 SIMIGVKPCI 95 (119)
T ss_dssp TEECEEEECC
T ss_pred CEEEEEEECC
Confidence 677887753
No 214
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.37 E-value=0.0033 Score=42.86 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=32.5
Q ss_pred ccEEEEEeCCHHHHHHHHHhhCCceeCCeeEEEEecc
Q 033751 54 KGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 90 (112)
Q Consensus 54 rG~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~ 90 (112)
..+-.|+|.++.+|++||. .||..++|..|.|...+
T Consensus 62 ~NWikItYds~~~A~rAL~-~NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 62 NSWTKITYDNPASAVDALL-ENGAVFNGVLLGVIPYT 97 (132)
T ss_dssp TTEEEEEBSSHHHHHHHHT-TTTCEETTEECEEEECC
T ss_pred CcEEEEEcCCHHHHHHHHH-hCCeEeCcEEEEEEECC
Confidence 4688999999999999998 89999999988998875
No 215
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=92.87 E-value=0.19 Score=32.58 Aligned_cols=38 Identities=32% Similarity=0.484 Sum_probs=31.4
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhh
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADM 74 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l 74 (112)
|.++|++||.| . ++.+-|- .|||.|.+++.|..|+..+
T Consensus 32 I~~lFs~fggv-~---------------------------I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 32 LYQLFSAFGNI-Q---------------------------ISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp HHHHHTTTCSC-C---------------------------CEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred HHHHhhccCCE-E---------------------------EEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 67899999855 3 5666663 7999999999999999966
No 216
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=90.66 E-value=0.2 Score=32.52 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=22.7
Q ss_pred EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHhhC
Q 033751 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMN 75 (112)
Q Consensus 42 ~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~~l~ 75 (112)
++.+-|- .|||.|.+++.|..|+..+.
T Consensus 34 I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 34 ISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 5666663 89999999999999999764
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=83.38 E-value=0.8 Score=36.85 Aligned_cols=39 Identities=21% Similarity=0.260 Sum_probs=28.1
Q ss_pred HHHHhhccCcceecceeeeccCCCCCcccccccccccceEEEEEeeCCCCCcccEEEEEeCCHHHHHHHHH
Q 033751 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALA 72 (112)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~t~~~rG~afV~f~~~~~a~~Ai~ 72 (112)
|.++|++||+|.. +.+..++ | -|+.|+|.+.+++++++.
T Consensus 69 l~~y~~~~g~i~~---------------------------~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 69 FLKYLSQFGPINN---------------------------HFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHHHHGGGSCCCC---------------------------EEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred HHHHHHhcCCcce---------------------------EEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 6789999999988 5554432 2 599999999999997765
No 218
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.38 E-value=20 Score=23.09 Aligned_cols=37 Identities=24% Similarity=0.367 Sum_probs=30.1
Q ss_pred cEEEEEeCCHHHHHHHHHhhCCceeCCeeEEEEeccCC
Q 033751 55 GYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92 (112)
Q Consensus 55 G~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~~~ 92 (112)
+-|+|+|.+++.|++.++. .-+.+.+.+|.|....+.
T Consensus 48 ~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~~~ 84 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAPPR 84 (104)
T ss_dssp TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECCCC
T ss_pred CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCCCC
Confidence 5789999999999999874 357889999999775443
No 219
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=57.71 E-value=17 Score=29.19 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=18.6
Q ss_pred EEEEEeCCHHHHHHHHHhhC
Q 033751 56 YGYVTFSTEEEAQKALADMN 75 (112)
Q Consensus 56 ~afV~f~~~~~a~~Ai~~l~ 75 (112)
.|||.|.+.+.|..++..+.
T Consensus 475 ~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 475 SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp EEEEECSCHHHHHHHHHHHT
T ss_pred eEEEEECCHHHHHHHHHHHH
Confidence 79999999999999999885
No 220
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=51.54 E-value=14 Score=21.32 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=24.8
Q ss_pred EEEEEeCCHHHHHHHHHhhCCceeCCeeEEEEecc
Q 033751 56 YGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 90 (112)
Q Consensus 56 ~afV~f~~~~~a~~Ai~~l~g~~l~g~~i~V~~a~ 90 (112)
|.||+-.. +.+..++..|++..+.|+.+.++.++
T Consensus 42 ~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 42 ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp CEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred cEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 78888865 45777888899999999999888764
No 221
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=37.95 E-value=36 Score=21.05 Aligned_cols=26 Identities=15% Similarity=0.314 Sum_probs=23.8
Q ss_pred cEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 55 GYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 55 G~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
.-|+|.|.+.+++..-...+||+.+-
T Consensus 46 SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 46 ARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp EEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred eEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 67999999999999999999999864
No 222
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=30.68 E-value=41 Score=20.50 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.5
Q ss_pred CcccEEEEEeCCHHHHHHHHHhhCC
Q 033751 52 RSKGYGYVTFSTEEEAQKALADMNG 76 (112)
Q Consensus 52 ~~rG~afV~f~~~~~a~~Ai~~l~g 76 (112)
...||-||++...++...++....|
T Consensus 48 ~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 48 SLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp TSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred ccCCEEEEEEecchhHHHHHHCCCC
Confidence 3789999999999999888887665
No 223
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=23.55 E-value=66 Score=20.21 Aligned_cols=26 Identities=12% Similarity=0.286 Sum_probs=23.4
Q ss_pred cEEEEEeCCHHHHHHHHHhhCCceeC
Q 033751 55 GYGYVTFSTEEEAQKALADMNGKLLD 80 (112)
Q Consensus 55 G~afV~f~~~~~a~~Ai~~l~g~~l~ 80 (112)
..|+|.|.+.++...=....+|+.+-
T Consensus 54 SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 54 SRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred eEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 56999999999999999999998863
Done!