BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033753
(112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AVA|A Chain A, Solution Structure Of Stearoyl-Acyl Carrier Protein
pdb|2FVA|A Chain A, Structure Of 18:0-Acp With Docked Fatty Acid
pdb|2FVE|A Chain A, Structure Of 10:0-Acp (Protein Alone)
pdb|2FVF|A Chain A, Structure Of 10:0-Acp (Protein With Docked Fatty Acid)
Length = 82
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%)
Query: 58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVH 100
AK ET+ KV +IV+ +LAL A+ +T++S+FS LGADSLDTV
Sbjct: 1 AKKETIDKVSDIVKEKLALGADVVVTADSEFSKLGADSLDTVE 43
>pdb|2XZ0|D Chain D, The Structure Of The 2:1 (Partially Occupied) Complex
Between Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (Castor Bean) And Acyl Carrier Protein.
pdb|2XZ1|C Chain C, The Structure Of The 2:2 (Fully Occupied) Complex Between
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (Castor Bean) And Acyl Carrier Protein.
pdb|2XZ1|D Chain D, The Structure Of The 2:2 (Fully Occupied) Complex Between
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (Castor Bean) And Acyl Carrier Protein
Length = 82
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 33/43 (76%)
Query: 58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVH 100
AK ET+ KV +IV+ +LAL A+ +T++S+FS LGAD LDTV
Sbjct: 1 AKKETIDKVSDIVKEKLALGADVVVTADSEFSKLGADXLDTVE 43
>pdb|2EHS|A Chain A, Crystal Structure Of Acyl Carrier Protein From Aquifex
Aeolicus (Form 1)
pdb|2EHT|A Chain A, Crystal Structure Of Acyl Carrier Protein From Aquifex
Aeolicus (Form 2)
Length = 77
Score = 32.0 bits (71), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 64 QKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVH 100
++V EI+ QL + E +T E+KF LGADSLD V
Sbjct: 4 ERVKEIIAEQLGVEKEK-ITPEAKFVEDLGADSLDVVE 40
>pdb|2K92|A Chain A, Structural Modification Of Acyl Carrier Protein By Butyryl
Group
pdb|2K93|A Chain A, Structural Modification Of Acyl Carrier Protein By Butyryl
Group
pdb|2K94|A Chain A, Structural Modification Of Acyl Carrier Protein By Butyryl
Group
Length = 77
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 64 QKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVH 100
++V +I+ +QL + E E+T+ + F LGADSLDTV
Sbjct: 5 ERVKKIIGQQLGVKQE-EVTNNASFVEDLGADSLDTVE 41
>pdb|2L3V|A Chain A, Nmr Structure Of Acyl Carrier Protein From Brucella
Melitensis
Length = 79
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 61 ETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVH 100
+T ++V +IV L + A+ S LGADSLDTV
Sbjct: 4 DTAERVKKIVVEHLGVDADKVTEGASFIDDLGADSLDTVE 43
>pdb|2L0Q|A Chain A, Nmr Solution Structure Of Vibrio Harveyi Acyl Carrier
Protein (Acp)
Length = 80
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 64 QKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVH 100
++V +I+ QL + E E+ +E+ F LGADSLDTV
Sbjct: 9 ERVKKIIVEQLGVD-EAEVKNEASFVDDLGADSLDTVE 45
>pdb|3EJB|A Chain A, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJB|C Chain C, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJB|E Chain E, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJB|G Chain G, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|A Chain A, Crystal Structure Of P450bioi In Complex With
Hexadec-9z- Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|C Chain C, Crystal Structure Of P450bioi In Complex With
Hexadec-9z- Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|E Chain E, Crystal Structure Of P450bioi In Complex With
Hexadec-9z- Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|G Chain G, Crystal Structure Of P450bioi In Complex With
Hexadec-9z- Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|A Chain A, Crystal Structure Of P450bioi In Complex With
Octadec-9z- Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|C Chain C, Crystal Structure Of P450bioi In Complex With
Octadec-9z- Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|E Chain E, Crystal Structure Of P450bioi In Complex With
Octadec-9z- Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|G Chain G, Crystal Structure Of P450bioi In Complex With
Octadec-9z- Enoic Acid Ligated Acyl Carrier Protein
Length = 97
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 64 QKVCEIVRRQLALPAETELTSESKF-SALGADSLDTV 99
++V +I+ QL + E E+T+ + F LGADSLDTV
Sbjct: 25 ERVKKIIGEQLGVKQE-EVTNNASFVEDLGADSLDTV 60
>pdb|1L0I|A Chain A, Crystal Structure Of Butyryl-Acp I62m Mutant
Length = 78
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 64 QKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVH 100
++V +I+ QL + E E+T+ + F LGADSLDTV
Sbjct: 6 ERVKKIIGEQLGVKQE-EVTNNASFVEDLGADSLDTVE 42
>pdb|1T8K|A Chain A, Crystal Structure Of Apo Acyl Carrier Protein From E. Coli
pdb|2FAC|A Chain A, Crystal Structure Of E. Coli Hexanoyl-acp
pdb|2FAC|B Chain B, Crystal Structure Of E. Coli Hexanoyl-acp
pdb|2FAD|A Chain A, Crystal Structure Of E. Coli Heptanoyl-Acp
pdb|2FAD|B Chain B, Crystal Structure Of E. Coli Heptanoyl-Acp
pdb|2FAE|A Chain A, Crystal Structure Of E. Coli Decanoyl-Acp
pdb|2FAE|B Chain B, Crystal Structure Of E. Coli Decanoyl-Acp
pdb|1ACP|A Chain A, Refinement Of The Nmr Structures For Acyl Carrier Protein
With Scalar Coupling Data
pdb|4ETW|D Chain D, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
pdb|4ETW|B Chain B, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
Length = 77
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 64 QKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVH 100
++V +I+ QL + E E+T+ + F LGADSLDTV
Sbjct: 5 ERVKKIIGEQLGVKQE-EVTNNASFVEDLGADSLDTVE 41
>pdb|1L0H|A Chain A, Crystal Structure Of Butyryl-Acp From E.Coli
pdb|2FHS|C Chain C, Structure Of Acyl Carrier Protein Bound To Fabi, The Enoyl
Reductase From Escherichia Coli
pdb|3NY7|B Chain B, Stas Domain Of Ychm Bound To Acp
Length = 78
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 64 QKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVH 100
++V +I+ QL + E E+T+ + F LGADSLDTV
Sbjct: 6 ERVKKIIGEQLGVKQE-EVTNNASFVEDLGADSLDTVE 42
>pdb|1H7X|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
Length = 1025
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 54 VSCSAKPETVQKVCEIVRRQLALPAETELT 83
++C PE V+ +C VR+ + +P +LT
Sbjct: 682 LACGQDPELVRNICRWVRQAVQIPFFAKLT 711
>pdb|1H7W|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GT8|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
Length = 1025
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 54 VSCSAKPETVQKVCEIVRRQLALPAETELT 83
++C PE V+ +C VR+ + +P +LT
Sbjct: 682 LACGQDPELVRNICRWVRQAVQIPFFAKLT 711
>pdb|1X3O|A Chain A, Crystal Structure Of The Acyl Carrier Protein From Thermus
Thermophilus Hb8
Length = 80
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 59 KPETVQKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVH 100
+ E +KV ++ +L + E +T E++F LGADSLDTV
Sbjct: 3 EQEIFEKVKAVIADKLQVEPEK-VTLEARFIEDLGADSLDTVE 44
>pdb|2E1Q|A Chain A, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|B Chain B, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|C Chain C, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|D Chain D, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
Length = 1333
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 32 LKMAIGGWRKNRFPSLKTNRFCVSCSAKPETVQKVCEIVRRQLALPAE 79
L + GG +LKT + +S K E +Q VC + +L LP +
Sbjct: 452 LALCYGGMANRTISALKTTQRQLSKLWKEELLQDVCAGLAEELHLPPD 499
>pdb|2CKJ|A Chain A, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|B Chain B, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|C Chain C, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|D Chain D, Human Milk Xanthine Oxidoreductase
Length = 1333
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 32 LKMAIGGWRKNRFPSLKTNRFCVSCSAKPETVQKVCEIVRRQLALPAE 79
L + GG +LKT + +S K E +Q VC + +L LP +
Sbjct: 452 LALCYGGMANRTISALKTTQRQLSKLWKEELLQDVCAGLAEELHLPPD 499
>pdb|2KR5|A Chain A, Solution Structure Of An Acyl Carrier Protein Domain
From Fu I Polyketide Synthase
Length = 89
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 61 ETVQKVCEIVRRQLALPAETELTSESKFSALGADSL 96
E + V +V + + E ELT +S F+ +G DSL
Sbjct: 11 EKLDAVMRVVSEESGIALE-ELTDDSNFADMGIDSL 45
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.127 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,440,101
Number of Sequences: 62578
Number of extensions: 74567
Number of successful extensions: 176
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 163
Number of HSP's gapped (non-prelim): 16
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)