Query 033753
Match_columns 112
No_of_seqs 193 out of 1061
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 05:54:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033753.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033753hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1748 Acyl carrier protein/N 99.7 2.6E-17 5.7E-22 119.5 2.9 56 56-112 48-104 (131)
2 PRK07117 acyl carrier protein; 99.6 2.1E-15 4.6E-20 100.6 5.4 55 57-112 1-56 (79)
3 PRK05828 acyl carrier protein; 99.5 4.4E-14 9.5E-19 95.3 5.9 55 57-112 1-56 (84)
4 PRK07639 acyl carrier protein; 99.5 8.3E-14 1.8E-18 93.9 6.5 56 57-112 1-57 (86)
5 PRK05350 acyl carrier protein; 99.5 7.3E-14 1.6E-18 92.4 5.3 55 57-112 2-57 (82)
6 PRK12449 acyl carrier protein; 99.5 1.3E-13 2.9E-18 90.1 6.1 55 57-112 1-56 (80)
7 PRK05883 acyl carrier protein; 99.5 1.8E-13 4E-18 93.1 6.4 56 56-112 9-65 (91)
8 PRK08172 putative acyl carrier 99.4 1.6E-13 3.5E-18 91.9 4.9 51 61-112 4-55 (82)
9 PRK06508 acyl carrier protein; 99.4 2.1E-13 4.6E-18 93.7 5.4 52 60-112 2-54 (93)
10 CHL00124 acpP acyl carrier pro 99.4 2.6E-13 5.6E-18 89.1 5.1 55 57-112 1-56 (82)
11 PTZ00171 acyl carrier protein; 99.4 1.2E-12 2.6E-17 96.6 5.9 56 56-112 65-121 (148)
12 TIGR00517 acyl_carrier acyl ca 99.4 1.2E-12 2.6E-17 85.0 5.1 52 60-112 2-54 (77)
13 COG0236 AcpP Acyl carrier prot 99.3 2.6E-12 5.6E-17 84.6 5.8 53 59-112 3-56 (80)
14 PRK09184 acyl carrier protein; 99.3 3.6E-12 7.9E-17 86.8 5.2 54 58-112 3-61 (89)
15 PRK00982 acpP acyl carrier pro 99.2 5.1E-11 1.1E-15 77.2 4.8 52 60-112 2-54 (78)
16 PRK07081 acyl carrier protein; 99.1 6.6E-11 1.4E-15 79.1 4.5 49 63-112 2-52 (83)
17 PF00550 PP-binding: Phosphopa 99.1 1.7E-10 3.8E-15 71.8 5.5 48 64-112 1-48 (67)
18 PRK05087 D-alanine--poly(phosp 99.0 7.8E-10 1.7E-14 73.6 5.2 51 61-112 2-53 (78)
19 TIGR01688 dltC D-alanine--poly 98.6 4.3E-08 9.4E-13 64.9 4.1 48 64-112 2-50 (73)
20 PF14573 PP-binding_2: Acyl-ca 98.2 2.6E-06 5.6E-11 59.0 4.8 50 61-112 10-65 (96)
21 smart00823 PKS_PP Phosphopante 98.0 2.7E-05 5.8E-10 47.9 6.0 52 60-111 11-62 (86)
22 TIGR02813 omega_3_PfaA polyket 98.0 9.5E-06 2.1E-10 80.3 5.2 51 59-110 1305-1356(2582)
23 PRK06060 acyl-CoA synthetase; 97.5 0.00021 4.4E-09 61.6 5.5 52 61-112 545-596 (705)
24 PF07377 DUF1493: Protein of u 97.3 0.00083 1.8E-08 46.8 5.6 52 60-111 2-57 (111)
25 TIGR03443 alpha_am_amid L-amin 96.9 0.0016 3.5E-08 60.0 5.9 53 59-112 846-898 (1389)
26 KOG1202 Animal-type fatty acid 96.6 0.0014 3.1E-08 62.5 3.1 48 65-112 2008-2055(2376)
27 PRK10252 entF enterobactin syn 96.6 0.0049 1.1E-07 56.1 6.2 52 58-112 975-1026(1296)
28 TIGR02813 omega_3_PfaA polyket 96.6 0.0024 5.2E-08 63.9 4.5 52 58-110 1208-1260(2582)
29 PRK12467 peptide synthase; Pro 96.2 0.011 2.5E-07 60.5 6.5 52 58-112 3602-3653(3956)
30 PRK05691 peptide synthase; Val 95.4 0.026 5.6E-07 58.3 5.7 52 58-112 583-634 (4334)
31 PRK12467 peptide synthase; Pro 95.2 0.037 8E-07 57.0 5.8 52 58-112 1027-1078(3956)
32 PRK12316 peptide synthase; Pro 95.1 0.038 8.2E-07 58.0 5.8 52 58-112 5069-5120(5163)
33 COG3433 Aryl carrier domain [S 95.1 0.023 5E-07 37.9 2.9 41 66-107 3-43 (74)
34 PRK05691 peptide synthase; Val 95.0 0.046 1E-06 56.5 5.9 52 58-112 4238-4289(4334)
35 PRK12316 peptide synthase; Pro 94.5 0.067 1.4E-06 56.2 5.6 52 58-112 2513-2564(5163)
36 TIGR02372 4_coum_CoA_lig 4-cou 91.4 0.46 1E-05 39.1 5.3 53 59-111 5-67 (386)
37 COG1669 Predicted nucleotidylt 43.9 1E+02 0.0022 21.4 5.6 52 60-111 8-72 (97)
38 PF08766 DEK_C: DEK C terminal 40.1 30 0.00066 20.8 2.3 20 92-111 17-36 (54)
39 KOG1178 Non-ribosomal peptide 39.2 23 0.0005 33.8 2.3 32 80-111 614-645 (1032)
40 KOG2452 Formyltetrahydrofolate 33.1 69 0.0015 29.0 4.2 51 58-110 319-369 (881)
41 smart00151 SWIB SWI complex, B 30.6 80 0.0017 20.3 3.3 55 55-109 18-75 (77)
42 PF15167 DUF4581: Domain of un 27.3 28 0.00061 25.2 0.7 35 44-78 61-98 (128)
43 cd01763 Sumo Small ubiquitin-r 25.5 8.9 0.00019 25.2 -2.0 46 58-103 29-82 (87)
44 PTZ00397 macrophage migration 23.4 88 0.0019 21.2 2.6 22 57-78 72-93 (116)
45 smart00213 UBQ Ubiquitin homol 20.9 63 0.0014 18.6 1.3 19 60-78 19-37 (64)
No 1
>KOG1748 consensus Acyl carrier protein/NADH-ubiquinone oxidoreductase, NDUFAB1/SDAP subunit [Energy production and conversion; Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.67 E-value=2.6e-17 Score=119.53 Aligned_cols=56 Identities=36% Similarity=0.550 Sum_probs=53.4
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753 56 CSAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 56 ~~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
|.+++++.++|.++|+.+..+++ +.++++++|. |||+||||+|||||+|||||||.
T Consensus 48 ~l~k~~v~~RVl~VVk~~dki~~-~k~~~~s~f~~DLGlDSLD~VEiVMAlEEEFgiE 104 (131)
T KOG1748|consen 48 CLAKKEVVDRVLDVVKKFDKIDP-SKLTTDSDFFKDLGLDSLDTVEIVMALEEEFGIE 104 (131)
T ss_pred hhhHHHHHHHHHHHHHHhhcCCc-cccchhhHHHHhcCCcccccchhhhhhHHHhCCc
Confidence 99999999999999999999987 6899999997 99999999999999999999984
No 2
>PRK07117 acyl carrier protein; Validated
Probab=99.59 E-value=2.1e-15 Score=100.58 Aligned_cols=55 Identities=22% Similarity=0.324 Sum_probs=51.2
Q ss_pred CChHHHHHHHHHHHHHhc-CCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753 57 SAKPETVQKVCEIVRRQL-ALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 57 ~~~~ei~ekV~eIl~~~l-~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
+++++|+++|+++|++++ ++++ ++|+++++|.|||+||||++||++++|++|||.
T Consensus 1 M~~~ei~~~v~~ii~e~~p~i~~-~~I~~~~~l~DLg~DSlD~veiv~~led~f~i~ 56 (79)
T PRK07117 1 MDKQRIFDILVRHIREVLPDLDQ-HQFQPEDSLVDLGANSMDRAEIVIMTLESLSLK 56 (79)
T ss_pred CCHHHHHHHHHHHHHHHcCCCCH-HHCCCCCChhhcCCChHHHHHHHHHHHHHHCCc
Confidence 367899999999999999 6886 799999999999999999999999999999983
No 3
>PRK05828 acyl carrier protein; Validated
Probab=99.50 E-value=4.4e-14 Score=95.29 Aligned_cols=55 Identities=24% Similarity=0.312 Sum_probs=50.6
Q ss_pred CChHHHHHHHHHHHHH-hcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753 57 SAKPETVQKVCEIVRR-QLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 57 ~~~~ei~ekV~eIl~~-~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
++++||+++|++|+++ +++++. +.++++++|.|||+||||++||+++||++|||.
T Consensus 1 m~~~eI~~~i~~ii~e~~~~~~~-d~i~~~~~~~dLg~DSLd~velv~~lE~~f~I~ 56 (84)
T PRK05828 1 MQEMEILLKIKEIAKKKNFAVTL-DESNINKPYRELKIDSLDMFSIIVSLESEFNIE 56 (84)
T ss_pred CCHHHHHHHHHHHHHHhccCCCc-ccccCCCCHHhcCCCHHHHHHHHHHHHHHHCCC
Confidence 4688999999999998 688876 699999999999999999999999999999984
No 4
>PRK07639 acyl carrier protein; Provisional
Probab=99.49 E-value=8.3e-14 Score=93.87 Aligned_cols=56 Identities=20% Similarity=0.256 Sum_probs=51.3
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 57 ~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
+++++++++|++||++++++++.++++++++|. |||+||+|++||+++||++|||.
T Consensus 1 M~~~ei~~~i~~il~e~l~~~~~~~i~~d~~l~edL~lDSld~velv~~lE~~fgi~ 57 (86)
T PRK07639 1 MRREALKNAVLKIMEEKLELKNVTHLEETMRLNEDLYIDSVMMLQLIVYIEMDVKLC 57 (86)
T ss_pred CCHHHHHHHHHHHHHHHhCCCccccCCCCCCcccccCCChHHHHHHHHHHHHHHCCc
Confidence 467899999999999999987546899999997 99999999999999999999984
No 5
>PRK05350 acyl carrier protein; Provisional
Probab=99.47 E-value=7.3e-14 Score=92.41 Aligned_cols=55 Identities=20% Similarity=0.321 Sum_probs=51.2
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 57 ~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
+++++++++|+++|++++++++ .+|+++++|. |||+|||+++||+++||++|||.
T Consensus 2 m~~~~i~~~v~~ii~~~~~~~~-~~i~~d~~l~~dlg~DSld~veli~~lE~~fgI~ 57 (82)
T PRK05350 2 MTREEILERLRAILVELFEIDP-EDITPEANLYEDLDLDSIDAVDLVVHLQKLTGKK 57 (82)
T ss_pred CCHHHHHHHHHHHHHHHhCCCH-HHCCCCccchhhcCCCHHHHHHHHHHHHHHHCCc
Confidence 4688999999999999999987 7999999985 99999999999999999999984
No 6
>PRK12449 acyl carrier protein; Provisional
Probab=99.46 E-value=1.3e-13 Score=90.08 Aligned_cols=55 Identities=13% Similarity=0.308 Sum_probs=51.1
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 57 ~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
++++++.++|++++++++++++ ..++++++|. |||+||+++++|+++||++|||.
T Consensus 1 m~~~~i~~~l~~il~~~~~~~~-~~i~~~~~l~~dlg~DSl~~~~li~~lE~~f~i~ 56 (80)
T PRK12449 1 MTREEIFERLINLIQKQRSYLS-LAITEQTHLKDDLAVDSIELVEFIINVEDEFHIA 56 (80)
T ss_pred CCHHHHHHHHHHHHHHHhCCCc-cccCCCCcHHHHcCCcHHHHHHHHHHHHHHhCCC
Confidence 3678999999999999999986 6999999995 99999999999999999999984
No 7
>PRK05883 acyl carrier protein; Validated
Probab=99.45 E-value=1.8e-13 Score=93.14 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=52.5
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753 56 CSAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 56 ~~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
|.++.+|.++|+++|++++++++ +.|+++++|. +||+|||++++++++||++|||.
T Consensus 9 ~~~~~~I~~~l~~iia~~l~v~~-~~I~~d~~l~~dlg~DSL~~v~lv~~lE~~fgI~ 65 (91)
T PRK05883 9 TSSPSTVSATLLSILRDDLNVDL-TRVTPDARLVDDVGLDSVAFAVGMVAIEERLGVA 65 (91)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCh-hhCCCCCchhhccCCChHHHHHHHHHHHHHHCCC
Confidence 66788999999999999999987 7999999996 99999999999999999999984
No 8
>PRK08172 putative acyl carrier protein IacP; Validated
Probab=99.43 E-value=1.6e-13 Score=91.87 Aligned_cols=51 Identities=20% Similarity=0.313 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753 61 ETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 61 ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
+++++|++++++++++++ ++|+++++|. |||+|||++++|+++||++|||.
T Consensus 4 ~i~~~v~~iiae~l~v~~-~~i~~d~~l~~dL~~DSld~v~lv~~lEe~F~I~ 55 (82)
T PRK08172 4 DIEARVKKVITSCIAVDV-DSINGQTHLVEDLYADSLDLIDIVFGLSEEFDIS 55 (82)
T ss_pred cHHHHHHHHHHHHHCCCH-HHCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCC
Confidence 799999999999999997 7999999996 99999999999999999999984
No 9
>PRK06508 acyl carrier protein; Provisional
Probab=99.43 E-value=2.1e-13 Score=93.65 Aligned_cols=52 Identities=27% Similarity=0.422 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753 60 PETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 60 ~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
..++++|++||++++++++ .+|+++++|. |||+||||++||+++||++|||.
T Consensus 2 ~~i~ekv~~Ilae~~~vd~-~~It~ds~~~edL~~DSLd~veli~~lE~eFgI~ 54 (93)
T PRK06508 2 SSTFDKVADIIAETSDIPR-DTITPESHTIDDLGIDSLDFLDIVFAIDKAFGIK 54 (93)
T ss_pred hHHHHHHHHHHHHHhCCCH-HHCCCCCcchhccCCCHHHHHHHHHHHHHHHCCc
Confidence 4689999999999999987 7999999996 99999999999999999999984
No 10
>CHL00124 acpP acyl carrier protein; Validated
Probab=99.42 E-value=2.6e-13 Score=89.09 Aligned_cols=55 Identities=35% Similarity=0.518 Sum_probs=51.1
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 57 ~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
++++++.++|++++++.+++++ ..++++++|. |||+||++++||+++||++|||.
T Consensus 1 M~~~~i~~~l~~ii~~~~~~~~-~~i~~d~~l~~dlg~DSl~~~eli~~le~~f~i~ 56 (82)
T CHL00124 1 MTKNDIFEKVQSIVAEQLGIEK-SEVTLDANFTRDLGADSLDVVELVMAIEEKFDIE 56 (82)
T ss_pred CCHHHHHHHHHHHHHHHHCCCH-HHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCc
Confidence 4678999999999999999986 6899999997 69999999999999999999984
No 11
>PTZ00171 acyl carrier protein; Provisional
Probab=99.36 E-value=1.2e-12 Score=96.57 Aligned_cols=56 Identities=34% Similarity=0.476 Sum_probs=52.2
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753 56 CSAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 56 ~~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
-+++++++++|++++++.+++++ ++|+++++|. |||+||||++||+++||++|||.
T Consensus 65 ~~~~~~v~~~l~eiiae~l~vd~-~~I~~ds~~~~dLg~DSLd~veLv~~LEdeFgI~ 121 (148)
T PTZ00171 65 LLSKEDVLTRVKKVVKNFEKVDA-SKITPESNFVKDLGADSLDVVELLIAIEQEFNLT 121 (148)
T ss_pred ccCHHHHHHHHHHHHHHHhCCCH-hhCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCc
Confidence 45789999999999999999986 6999999996 99999999999999999999984
No 12
>TIGR00517 acyl_carrier acyl carrier protein. S (Ser) at position 37 in the seed alignment, in the motif DSLD, is the phosphopantetheine attachment site.
Probab=99.36 E-value=1.2e-12 Score=85.00 Aligned_cols=52 Identities=37% Similarity=0.540 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753 60 PETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 60 ~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
.++.++|++++++.+++++ .+++++++|. |||+||++++||+++||++|||.
T Consensus 2 ~~i~~~l~~il~~~~~~~~-~~i~~~~~l~~dlglDSl~~veli~~lE~~f~i~ 54 (77)
T TIGR00517 2 QEIFEKVKAIIKEQLNVDE-DQVTPDASFVEDLGADSLDTVELVMALEEEFDIE 54 (77)
T ss_pred hHHHHHHHHHHHHHHCCCH-HHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCC
Confidence 5789999999999999986 6999999996 99999999999999999999984
No 13
>COG0236 AcpP Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.34 E-value=2.6e-12 Score=84.63 Aligned_cols=53 Identities=32% Similarity=0.455 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753 59 KPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 59 ~~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
.+.+.++|++++.++++.+. .++++++.|. |||+||||++||+++||++|||.
T Consensus 3 ~~~~~~~i~~ii~e~l~~~~-~~i~~~~~~~~dlg~DSld~veLi~~lE~~f~i~ 56 (80)
T COG0236 3 MEAIEERVKDIIAEQLGVDE-EEITTEASFVEDLGLDSLDLVELVMALEEEFGIE 56 (80)
T ss_pred hHHHHHHHHHHHHHHhCCch-hhcCcccccccccCccHHHHHHHHHHHHHHHCCc
Confidence 45699999999999999985 6999999997 89999999999999999999984
No 14
>PRK09184 acyl carrier protein; Provisional
Probab=99.30 E-value=3.6e-12 Score=86.76 Aligned_cols=54 Identities=19% Similarity=0.406 Sum_probs=48.3
Q ss_pred ChHHHHHHHHHHHHHhcCC---CCCCCCCCCCCc-c-ccCCchhhHHHHHHHHHHHcCCC
Q 033753 58 AKPETVQKVCEIVRRQLAL---PAETELTSESKF-S-ALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 58 ~~~ei~ekV~eIl~~~l~l---~~~~~It~es~f-~-DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
..++++++|+++|.+++++ ++ ++|+++++| . |||+||||++||++++|++|||.
T Consensus 3 ~~~~l~~~l~~~I~e~l~~~~i~~-~~I~~d~~l~~~dLglDSld~velv~~lE~~fgi~ 61 (89)
T PRK09184 3 SMTALERELAELIVEELNLEDVQP-ESIDADAPLYGEGLGLDSIDILEIALVISKRYGFQ 61 (89)
T ss_pred hHHHHHHHHHHHHHHHHCCCCCCH-HHCCCCcccccccCCCcHHHHHHHHHHHHHHHCCc
Confidence 3468999999999999985 55 699999997 4 79999999999999999999983
No 15
>PRK00982 acpP acyl carrier protein; Provisional
Probab=99.16 E-value=5.1e-11 Score=77.20 Aligned_cols=52 Identities=40% Similarity=0.542 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCc-cccCCchhhHHHHHHHHHHHcCCC
Q 033753 60 PETVQKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 60 ~ei~ekV~eIl~~~l~l~~~~~It~es~f-~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
.++.++|++++++.+++++ ..++++++| .|||+||++.++|+..+|++||+.
T Consensus 2 ~~i~~~l~~~l~~~l~~~~-~~i~~d~~l~~dlglDSl~~~~li~~le~~f~i~ 54 (78)
T PRK00982 2 SEIFEKVKKIIVEQLGVDE-EEVTPEASFVDDLGADSLDTVELVMALEEEFGIE 54 (78)
T ss_pred hHHHHHHHHHHHHHHCCCH-HHCCCCcchHhhcCCCHHHHHHHHHHHHHHHCCC
Confidence 3688999999999999986 799999999 599999999999999999999984
No 16
>PRK07081 acyl carrier protein; Provisional
Probab=99.13 E-value=6.6e-11 Score=79.09 Aligned_cols=49 Identities=20% Similarity=0.349 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCC--CCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753 63 VQKVCEIVRRQLAL--PAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 63 ~ekV~eIl~~~l~l--~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
.++|+++|.+.+++ ++ +.++++++|.|||+||+++++|++.||++|||.
T Consensus 2 ~~~i~~ii~~~~~~~~~~-~~i~~d~~l~dlGlDSl~~v~li~~lE~~f~I~ 52 (83)
T PRK07081 2 KNTIRTILKKVAKLEVPI-DSIADDADLYEAGLSSLATVQLMLAIEDAFDIE 52 (83)
T ss_pred hHHHHHHHHHHHcCCCCH-HhcCCCCCHhhcCCCHHHHHHHHHHHHHHhCCc
Confidence 57899999998544 43 689999999999999999999999999999984
No 17
>PF00550 PP-binding: Phosphopantetheine attachment site; InterPro: IPR006163 Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups []. The amino-terminal region of the ACP proteins is well defined and consists of alpha four helices arranged in a right-handed bundle held together by interhelical hydrophobic interactions. The Asp-Ser-Leu (DSL)motif is conserved in all of the ACP sequences, and the 4'-PP prosthetic group is covalently linked via a phosphodiester bond to the serine residue. The DSL sequence is present at the amino terminus of helix II, a domain of the protein referred to as the recognition helix and which is responsible for the interaction of ACPs with the enzymes of type II fatty acid synthesis [].; GO: 0048037 cofactor binding; PDB: 3EJB_E 3EJE_G 1L0I_A 2FHS_C 3EJD_E 2FAE_B 2FAD_B 2FAC_B 2K94_A 1ACP_A ....
Probab=99.11 E-value=1.7e-10 Score=71.79 Aligned_cols=48 Identities=27% Similarity=0.428 Sum_probs=44.5
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753 64 QKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 64 ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
++|++++++.++++. .+++++++|.++|+||++.++++..+|++||+.
T Consensus 1 e~l~~~~~~~l~~~~-~~i~~~~~~~~lG~DSl~~~~l~~~l~~~~g~~ 48 (67)
T PF00550_consen 1 EQLREIIAEVLGVDP-EEIDPDTDFFDLGLDSLDAIELVSELEEEFGIK 48 (67)
T ss_dssp HHHHHHHHHHHTSSG-GCTSTTSBTTTTTSSHHHHHHHHHHHHHHHTSS
T ss_pred CHHHHHHHHHHCcCH-hhCCCCCCHHHhCCchHHHHHHHHHHHHHHcCC
Confidence 578999999999876 799999999999999999999999999999973
No 18
>PRK05087 D-alanine--poly(phosphoribitol) ligase subunit 2; Validated
Probab=98.99 E-value=7.8e-10 Score=73.57 Aligned_cols=51 Identities=16% Similarity=0.116 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCccc-cCCchhhHHHHHHHHHHHcCCC
Q 033753 61 ETVQKVCEIVRRQLALPAETELTSESKFSA-LGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 61 ei~ekV~eIl~~~l~l~~~~~It~es~f~D-LG~DSLD~vEIv~~LEeeFgI~ 112 (112)
++.++|+++|.+.++.++ .+++++++|.+ .++||++++||+++||++|||.
T Consensus 2 ~i~~~I~~iL~~~~~~~~-~~~~~d~~l~~~g~lDSl~~veli~~lE~~fgi~ 53 (78)
T PRK05087 2 DFKEQVLDILEELTGEDI-VSENMDEDLFEEGILDSMGTVELLVELENRFDIE 53 (78)
T ss_pred cHHHHHHHHHHHHhCCCh-hccCCccchhhccCcchHHHHHHHHHHHHHhCCc
Confidence 478999999999998875 58899999984 4589999999999999999984
No 19
>TIGR01688 dltC D-alanine--poly(phosphoribitol) ligase, subunit 2. This protein is part of the teichoic acid operon in gram-positive organisms. Gram positive organisms incorporate teichoic acid in their cell walls, and in the fatty acid residues of the glycolipid component of the outer layer of the cytoplasmic membrane. This gene, dltC, encodes the alanyl carrier protein.
Probab=98.62 E-value=4.3e-08 Score=64.94 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCccccCC-chhhHHHHHHHHHHHcCCC
Q 033753 64 QKVCEIVRRQLALPAETELTSESKFSALGA-DSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 64 ekV~eIl~~~l~l~~~~~It~es~f~DLG~-DSLD~vEIv~~LEeeFgI~ 112 (112)
++|++||.+..+.+. ....++++|.+.|+ ||+++|+++.+||++|||.
T Consensus 2 e~i~eIL~~i~~~~~-~~~~~d~~L~~~GllDS~~~v~Li~~lE~ef~I~ 50 (73)
T TIGR01688 2 NGVLDILAEVTGSDD-VKENPDLELFEEGLLDSFGTVQLLLEIQNQFDID 50 (73)
T ss_pred hHHHHHHHHHhcCcc-cccCccHHHHHccchhHHHHHHHHHHHHHHhCCc
Confidence 678999999877653 35688999999998 9999999999999999984
No 20
>PF14573 PP-binding_2: Acyl-carrier; PDB: 3CE7_A.
Probab=98.21 E-value=2.6e-06 Score=58.97 Aligned_cols=50 Identities=24% Similarity=0.283 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCcc------ccCCchhhHHHHHHHHHHHcCCC
Q 033753 61 ETVQKVCEIVRRQLALPAETELTSESKFS------ALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 61 ei~ekV~eIl~~~l~l~~~~~It~es~f~------DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
.+-++|..++++.+... .++++.++|. ++.|||||+||+++.+|++|+|.
T Consensus 10 av~~~i~g~~kkyl~~~--~~it~~skL~e~rt~e~r~wD~LDtVefvldVEe~F~V~ 65 (96)
T PF14573_consen 10 AVTEYILGMLKKYLSEG--EEITYTSKLEESRTKEDRAWDSLDTVEFVLDVEEEFDVT 65 (96)
T ss_dssp HHHHHHHHHHHTTB-TT------TTS-GGGSBBTTSSB--HHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHcCCC--CccChhhhhHHhccccccccchhhhHHHHHhHHHHcCcc
Confidence 56788999999888654 5888888872 78999999999999999999984
No 21
>smart00823 PKS_PP Phosphopantetheine attachment site. Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups PUBMED:5321311.
Probab=97.99 E-value=2.7e-05 Score=47.92 Aligned_cols=52 Identities=29% Similarity=0.272 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCC
Q 033753 60 PETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNL 111 (112)
Q Consensus 60 ~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI 111 (112)
..+.+.+..++...++......++.++.|.++|+||+..+++...++++||+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~dSl~~~~~~~~l~~~~~~ 62 (86)
T smart00823 11 RLLLDLVREQVAAVLGHAAAEAIDPDRPFRDLGLDSLTAVELRNRLEAATGL 62 (86)
T ss_pred HHHHHHHHHHHHHHHCCCccccCCCCCCHHHcCchHHHHHHHHHHHHHHHCC
Confidence 3467778888888887765323588999999999999999999999999986
No 22
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=97.96 E-value=9.5e-06 Score=80.28 Aligned_cols=51 Identities=22% Similarity=0.219 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcC
Q 033753 59 KPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLN 110 (112)
Q Consensus 59 ~~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFg 110 (112)
..+++++|++++.++++++. +.++++++|. |||+||++.+||++.||++|+
T Consensus 1305 ~~~v~~~vl~vvae~tgyp~-e~L~~d~~le~DLGiDSI~~vEil~~le~~f~ 1356 (2582)
T TIGR02813 1305 LIQIQNVMLEVVADKTGYPT-EMLELEMDMEADLGIDSIKRVEILGTVQDTLP 1356 (2582)
T ss_pred HHHHHHHHHHHHHHHhCCCH-HHcCcccCchhhcCCCHHHHHHHHHHHHHhcC
Confidence 45899999999999999997 7999999997 999999999999999999997
No 23
>PRK06060 acyl-CoA synthetase; Validated
Probab=97.47 E-value=0.00021 Score=61.60 Aligned_cols=52 Identities=31% Similarity=0.315 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753 61 ETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 61 ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
.+.+.|+++++++++.+..+.|.++..|.|||.|||..+++...|+++||+.
T Consensus 545 ~~~~~v~~~~a~vl~~~~~~~i~~~~~f~~lG~dSl~av~l~~~l~~~~g~~ 596 (705)
T PRK06060 545 LVVDAVCAEAAKMLGEPDPWSVDQDLAFSELGFDSQMTVTLCKRLAAVTGLR 596 (705)
T ss_pred HHHHHHHHHHHHHhCCCChhhCCCCCChhhcCchHHHHHHHHHHHHHHhCCC
Confidence 4567888999999998644679999999999999999999999999999973
No 24
>PF07377 DUF1493: Protein of unknown function (DUF1493); InterPro: IPR010862 This family consists of several bacterial proteins of around 115 residues in length. Members of this family are largely found in Salmonella and Yersinia species and several have been described as being putative cytoplasmic proteins. The function of this family is unknown.
Probab=97.26 E-value=0.00083 Score=46.85 Aligned_cols=52 Identities=19% Similarity=0.246 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHhcCCC---CCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCC
Q 033753 60 PETVQKVCEIVRRQLALP---AETELTSESKFS-ALGADSLDTVHLTLLLSIWLNL 111 (112)
Q Consensus 60 ~ei~ekV~eIl~~~l~l~---~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI 111 (112)
+++.++|.+.|.+..+.. ....+++++.+. |||+|--|..|++....++|||
T Consensus 2 ~~i~~~I~~fi~~~~~~~~~~~~~~it~dt~L~~DL~~~~dda~elm~~f~~~F~V 57 (111)
T PF07377_consen 2 DDIEQEIIEFIREENGPYLFFKKKPITPDTDLQEDLGLDGDDAEELMEDFFERFNV 57 (111)
T ss_pred chHHHHHHHHHHHHcCcccccCcccCCCCCcHHHhcCCCHHHHHHHHHHHHHHhCC
Confidence 467888999999988873 236999999996 9999999999999999999998
No 25
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=96.95 E-value=0.0016 Score=60.02 Aligned_cols=53 Identities=19% Similarity=0.237 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753 59 KPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 59 ~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
..++.+.|.+++.+.++.+. ++++++.+|.+||.|||..++++..|+++||+.
T Consensus 846 ~~~~~~~l~~~~~~vl~~~~-~~i~~~~~ff~lGgdSL~a~~l~~~l~~~~~~~ 898 (1389)
T TIGR03443 846 FTETEREIRDLWLELLPNRP-ATISPDDSFFDLGGHSILATRMIFELRKKLNVE 898 (1389)
T ss_pred CCHHHHHHHHHHHHHhCCCc-cccCcCcchhhcCccHHHHHHHHHHHHHHhCCC
Confidence 34678889999999999864 579999999999999999999999999999863
No 26
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=96.63 E-value=0.0014 Score=62.45 Aligned_cols=48 Identities=21% Similarity=0.330 Sum_probs=42.1
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753 65 KVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 65 kV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
.+.+.|+..+|+.+-..+..+++|.|||+|||.-+||--.||++|+++
T Consensus 2008 dLiatiA~IlGlrD~~~vn~~asLaDLGlDSLMsvEikQtLER~~dlV 2055 (2376)
T KOG1202|consen 2008 DLIATIAHILGLRDLKAVNDDASLADLGLDSLMSVEIKQTLEREFDLV 2055 (2376)
T ss_pred cHHHHHHHHhcchhHhhccCCCchhhccchhhhhHHHHHHHhhhhcee
Confidence 355667788888766789999999999999999999999999999974
No 27
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=96.60 E-value=0.0049 Score=56.09 Aligned_cols=52 Identities=23% Similarity=0.216 Sum_probs=46.2
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753 58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
...++.+.|+++.++.++++ .+..+++|.+||.|||..++|+..|++.||+.
T Consensus 975 ~~~~~e~~l~~~~~~~l~~~---~~~~~~~ff~lGg~Sl~a~~l~~~l~~~~~~~ 1026 (1296)
T PRK10252 975 PKTGTETIIAAAFSSLLGCD---VVDADADFFALGGHSLLAMKLAAQLSRQFARQ 1026 (1296)
T ss_pred CCCHHHHHHHHHHHHHhCCC---CCCCCcCHHHcCCChHHHHHHHHHHHHHhCCC
Confidence 34577888999999999874 78899999999999999999999999999873
No 28
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=96.59 E-value=0.0024 Score=63.90 Aligned_cols=52 Identities=23% Similarity=0.294 Sum_probs=48.0
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcC
Q 033753 58 AKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLN 110 (112)
Q Consensus 58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFg 110 (112)
...++.+.+.+++.++.+.+. +.++++..|. |||+||++.+||+..++++|+
T Consensus 1208 ~~~~~~~~~l~vvae~tgyp~-e~L~ld~d~eaDLgIDSIkrveil~~l~~~~~ 1260 (2582)
T TIGR02813 1208 NDSAIQQVMMEVVAEKTGYPT-EMLELEMDMEADLGIDSIKRVEILGSVQEIIN 1260 (2582)
T ss_pred chhHHHHHHHHHHHhhccCCh-HhcccccccccccCcchhhhHHhhhhhhhhcc
Confidence 346799999999999999986 7999999997 999999999999999999997
No 29
>PRK12467 peptide synthase; Provisional
Probab=96.16 E-value=0.011 Score=60.47 Aligned_cols=52 Identities=23% Similarity=0.288 Sum_probs=46.8
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753 58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
...++.+++++|.+++|+++ .|..+.+|.+||.|||..+.++..|+++||+.
T Consensus 3602 p~~~~e~~l~~i~~~vL~~~---~i~~~d~Ff~lGgdSl~a~~l~~~l~~~~g~~ 3653 (3956)
T PRK12467 3602 PRSEVEQQLAAIWADVLGVE---QVGVTDNFFELGGDSLLALQVLSRIRQSLGLK 3653 (3956)
T ss_pred CCCHHHHHHHHHHHHHhCCC---CCCCCcchhcccchHHHHHHHHHHHHHHhCCC
Confidence 45578899999999999974 58899999999999999999999999999973
No 30
>PRK05691 peptide synthase; Validated
Probab=95.45 E-value=0.026 Score=58.29 Aligned_cols=52 Identities=19% Similarity=0.275 Sum_probs=46.1
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753 58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
...++.++++++.+++|+++ .|.++.+|.+||.|||..++++..++++||+.
T Consensus 583 ~~~~~e~~l~~~~~~vL~~~---~i~~~~~ff~lGgdSL~a~~l~~~l~~~~g~~ 634 (4334)
T PRK05691 583 SGDELQARIAAIWCEQLKVE---QVAADDHFFLLGGNSIAATQVVARLRDELGID 634 (4334)
T ss_pred CcchHHHHHHHHHHHHhCCC---CCCcCCchhhcccchHHHHHHHHHHHHHhCCc
Confidence 34578889999999999873 78899999999999999999999999999873
No 31
>PRK12467 peptide synthase; Provisional
Probab=95.17 E-value=0.037 Score=56.95 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=46.5
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753 58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
...++.+.++++.++.++++ .|..+.+|.+||.|||..+.++..++++||+.
T Consensus 1027 p~~~~e~~l~~i~~~vL~~~---~i~~~d~Ff~lGgdSl~a~~l~~~~~~~~g~~ 1078 (3956)
T PRK12467 1027 PQTELEKRLAAIWADVLKVE---RVGLTDNFFELGGHSLLATQVISRVRQRLGIQ 1078 (3956)
T ss_pred CCCHHHHHHHHHHHHHhCCC---CCCCCCCchhccCccHHHHHHHHHHHHHhCCC
Confidence 44578889999999999874 68899999999999999999999999999873
No 32
>PRK12316 peptide synthase; Provisional
Probab=95.14 E-value=0.038 Score=57.99 Aligned_cols=52 Identities=27% Similarity=0.334 Sum_probs=46.5
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753 58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
...++..+++++.++.|+++ .|..+.+|.+||.|||..+.|+..|+++||+.
T Consensus 5069 ~~~~~e~~l~~i~~~vL~~~---~i~~~~~Ff~lGgdSl~a~~l~~~l~~~~g~~ 5120 (5163)
T PRK12316 5069 PRSELEQQVAAIWAEVLQLE---RVGLDDNFFELGGHSLLAIQVTSRIQLELGLE 5120 (5163)
T ss_pred CCcHHHHHHHHHHHHHhCCC---CCCCCCChhhccchHHHHHHHHHHHHHHcCCC
Confidence 45678889999999999874 68899999999999999999999999999873
No 33
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.12 E-value=0.023 Score=37.93 Aligned_cols=41 Identities=20% Similarity=0.206 Sum_probs=31.6
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHH
Q 033753 66 VCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSI 107 (112)
Q Consensus 66 V~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEe 107 (112)
+++.+.+.++..+ ++++++.+|.+.|+||+-+|-++....+
T Consensus 3 Lr~~~~~Ll~e~~-~~l~dqeNLi~~GLDSiR~M~L~~~wR~ 43 (74)
T COG3433 3 LREQIAELLGESV-EELDDQENLIDYGLDSIRMMALLERWRK 43 (74)
T ss_pred HHHHHHHHHcCCh-hhcCchhhHHHhchhHHHHHHHHHHHHH
Confidence 3455566666554 6999999999999999999888776554
No 34
>PRK05691 peptide synthase; Validated
Probab=94.99 E-value=0.046 Score=56.51 Aligned_cols=52 Identities=19% Similarity=0.181 Sum_probs=47.0
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753 58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
.+.++..+|++|..+.|+++ .|..+.+|.+||-|||..+.++..+++.||+.
T Consensus 4238 p~~~~e~~l~~iw~~vL~~~---~i~~~d~Ff~lGg~Sl~a~~l~~~~~~~~~~~ 4289 (4334)
T PRK05691 4238 PRNELEQTLATIWADVLKVE---RVGVHDNFFELGGHSLLATQIASRVQKALQRN 4289 (4334)
T ss_pred CCCHHHHHHHHHHHHHhCCC---cCCCCCchhhcCCcHHHHHHHHHHHHHHhCCC
Confidence 45689999999999999974 68899999999999999999999999999863
No 35
>PRK12316 peptide synthase; Provisional
Probab=94.47 E-value=0.067 Score=56.25 Aligned_cols=52 Identities=19% Similarity=0.208 Sum_probs=46.4
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753 58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
...++.++++++.++.++++ .|..+.+|.+||.|||..++++..++++||+.
T Consensus 2513 p~~~~e~~l~~iw~~vL~~~---~i~~~d~Ff~lGgdSl~a~~l~~~~~~~~g~~ 2564 (5163)
T PRK12316 2513 PQEGLEQRLAAIWQAVLKVE---QVGLDDHFFELGGHSLLATQVVSRVRQDLGLE 2564 (5163)
T ss_pred CCCHHHHHHHHHHHHHhCCC---ccCCCCchhhhcchHHHHHHHHHHHHHHhCCC
Confidence 45678889999999999974 68889999999999999999999999999873
No 36
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=91.42 E-value=0.46 Score=39.12 Aligned_cols=53 Identities=19% Similarity=0.320 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHhcC--------CCCCCCCCCCCCcc--ccCCchhhHHHHHHHHHHHcCC
Q 033753 59 KPETVQKVCEIVRRQLA--------LPAETELTSESKFS--ALGADSLDTVHLTLLLSIWLNL 111 (112)
Q Consensus 59 ~~ei~ekV~eIl~~~l~--------l~~~~~It~es~f~--DLG~DSLD~vEIv~~LEeeFgI 111 (112)
.+.+...+..+|...++ +++....+.|+++. ++|+|||+.++|+.++-+-|++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (386)
T TIGR02372 5 AEAVGRLLVSLIAAEQQEGRVQHHQMPEARLLTADLRIDEETLGLDSLLRLSLVTAVAGFFHL 67 (386)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccCchhhhcccccccccccccccHHHHHHHHHHHHHHhcc
Confidence 45677777777776542 22223488899984 8999999999999999999986
No 37
>COG1669 Predicted nucleotidyltransferases [General function prediction only]
Probab=43.86 E-value=1e+02 Score=21.42 Aligned_cols=52 Identities=21% Similarity=0.196 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhcCCCCC--------CCCCCCCCc---cc--cCCchhhHHHHHHHHHHHcCC
Q 033753 60 PETVQKVCEIVRRQLALPAE--------TELTSESKF---SA--LGADSLDTVHLTLLLSIWLNL 111 (112)
Q Consensus 60 ~ei~ekV~eIl~~~l~l~~~--------~~It~es~f---~D--LG~DSLD~vEIv~~LEeeFgI 111 (112)
.++..++...+++..++... ++-+|++++ ++ =|..-++++++...|++-||+
T Consensus 8 ~~~lr~~~~~l~~k~gv~~~~vFGS~aRgE~~~~SDIDILVef~~~~~ll~~~~l~~~L~~llg~ 72 (97)
T COG1669 8 KKILRKIKPELKEKYGVKRVAVFGSYARGEQKPDSDIDILVEFEPGKTLLDLVRLEDELSDLLGR 72 (97)
T ss_pred HHHHHHHHHHHHHHhCCceEEEeeeeecCCCCCCCCceeEEeecCCccHHHHHHHHHHHHHHhCC
Confidence 34577888888877655421 455667765 23 378999999999999999986
No 38
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=40.11 E-value=30 Score=20.78 Aligned_cols=20 Identities=10% Similarity=0.132 Sum_probs=13.5
Q ss_pred CCchhhHHHHHHHHHHHcCC
Q 033753 92 GADSLDTVHLTLLLSIWLNL 111 (112)
Q Consensus 92 G~DSLD~vEIv~~LEeeFgI 111 (112)
+++++..=.+...||++||+
T Consensus 17 dl~~vT~k~vr~~Le~~~~~ 36 (54)
T PF08766_consen 17 DLDTVTKKQVREQLEERFGV 36 (54)
T ss_dssp -GGG--HHHHHHHHHHH-SS
T ss_pred CHhHhhHHHHHHHHHHHHCC
Confidence 35677778899999999987
No 39
>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=39.16 E-value=23 Score=33.78 Aligned_cols=32 Identities=31% Similarity=0.374 Sum_probs=28.0
Q ss_pred CCCCCCCCccccCCchhhHHHHHHHHHHHcCC
Q 033753 80 TELTSESKFSALGADSLDTVHLTLLLSIWLNL 111 (112)
Q Consensus 80 ~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI 111 (112)
..+.++++|.+||.||+..+-++..|-.++.+
T Consensus 614 ~~~s~d~~fF~lGgdSi~av~~~~~lr~~~~v 645 (1032)
T KOG1178|consen 614 AIVSPDSSFFQLGGDSISAVRLSGLLRKKGYV 645 (1032)
T ss_pred cccCCCcchhhhcchhHHHHHHHHhhhhhhee
Confidence 36889999999999999999999998887654
No 40
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]
Probab=33.06 E-value=69 Score=28.99 Aligned_cols=51 Identities=25% Similarity=0.246 Sum_probs=39.4
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcC
Q 033753 58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLN 110 (112)
Q Consensus 58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFg 110 (112)
+..-+.++++.+-...+..- .++..+++|..-|+.|.|.+.++-++.+-.|
T Consensus 319 ~e~~t~~~~~~iw~~il~kv--~~v~~~tdff~sga~s~dv~rlveeik~~~~ 369 (881)
T KOG2452|consen 319 AELVTAEAVRSVWQRILPKV--LEVEDSTDFFKSGAASVDVVRLVEEVKELCD 369 (881)
T ss_pred hHHHHHHHHHHHHHHhcchh--eeecccchHhhcCccchhHHHHHHHHHHhCC
Confidence 34457788888777766532 4778899999999999999999988876543
No 41
>smart00151 SWIB SWI complex, BAF60b domains.
Probab=30.61 E-value=80 Score=20.27 Aligned_cols=55 Identities=24% Similarity=0.456 Sum_probs=41.3
Q ss_pred cCCChHHHHHHHHHHHHHh-cCCCC-CCCCCCCCCcc-ccCCchhhHHHHHHHHHHHc
Q 033753 55 SCSAKPETVQKVCEIVRRQ-LALPA-ETELTSESKFS-ALGADSLDTVHLTLLLSIWL 109 (112)
Q Consensus 55 ~~~~~~ei~ekV~eIl~~~-l~l~~-~~~It~es~f~-DLG~DSLD~vEIv~~LEeeF 109 (112)
...++.|+...+.+-|+.. |.-+. ...|..|..|. =+|-|.+.+.|+.-.|...|
T Consensus 18 ~~~tr~ev~~~lw~YIk~n~L~d~~~k~~i~~D~~L~~l~~~~~v~~~~~~~ll~~Hl 75 (77)
T smart00151 18 PEMTRTEIIKRLWEYIKEHNLQDPQNKREILCDSKLEQIFGKDRMDMFEMNKLLTPHL 75 (77)
T ss_pred CcCcHHHHHHHHHHHHHHhcccCCccCCEEecCHHHHHHHCcCeecHHHHHHHHHHHc
Confidence 4568899999999999964 22211 13488888887 45999999999998887765
No 42
>PF15167 DUF4581: Domain of unknown function (DUF4581)
Probab=27.31 E-value=28 Score=25.25 Aligned_cols=35 Identities=34% Similarity=0.603 Sum_probs=25.1
Q ss_pred CCcccc-ccccccCCCh--HHHHHHHHHHHHHhcCCCC
Q 033753 44 FPSLKT-NRFCVSCSAK--PETVQKVCEIVRRQLALPA 78 (112)
Q Consensus 44 ~~s~~~-~r~~v~~~~~--~ei~ekV~eIl~~~l~l~~ 78 (112)
+|++.. +..-.+|--| .++.+||..-++..||++.
T Consensus 61 lpflqlaqdyisscGKk~l~e~leKvf~sf~pllglpd 98 (128)
T PF15167_consen 61 LPFLQLAQDYISSCGKKTLTESLEKVFKSFRPLLGLPD 98 (128)
T ss_pred hHHHHHHHHHHHHhchhHHHHHHHHHHHhhhhccCCCC
Confidence 566665 3344577644 5889999999998999975
No 43
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=25.47 E-value=8.9 Score=25.16 Aligned_cols=46 Identities=15% Similarity=0.286 Sum_probs=33.7
Q ss_pred ChHHHHHHHHHHHHHhcCCCCC--------CCCCCCCCccccCCchhhHHHHHH
Q 033753 58 AKPETVQKVCEIVRRQLALPAE--------TELTSESKFSALGADSLDTVHLTL 103 (112)
Q Consensus 58 ~~~ei~ekV~eIl~~~l~l~~~--------~~It~es~f~DLG~DSLD~vEIv~ 103 (112)
.+.+.+++|.+.+++..+++.. ..+.++..+.+||+..-|++++++
T Consensus 29 ~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l 82 (87)
T cd01763 29 KRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVML 82 (87)
T ss_pred cCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEE
Confidence 4557888888988888887652 467777778888887777665543
No 44
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=23.36 E-value=88 Score=21.18 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=19.3
Q ss_pred CChHHHHHHHHHHHHHhcCCCC
Q 033753 57 SAKPETVQKVCEIVRRQLALPA 78 (112)
Q Consensus 57 ~~~~ei~ekV~eIl~~~l~l~~ 78 (112)
..+.+..+.|++.+.+.+|+++
T Consensus 72 e~k~~l~~~i~~~l~~~lgi~~ 93 (116)
T PTZ00397 72 SNNSSIAAAITKILASHLKVKS 93 (116)
T ss_pred HHHHHHHHHHHHHHHHHhCcCc
Confidence 3567999999999999999986
No 45
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=20.93 E-value=63 Score=18.60 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhcCCCC
Q 033753 60 PETVQKVCEIVRRQLALPA 78 (112)
Q Consensus 60 ~ei~ekV~eIl~~~l~l~~ 78 (112)
..++..+++.|.+.+++++
T Consensus 19 ~~tv~~lk~~i~~~~~~~~ 37 (64)
T smart00213 19 SDTVSELKEKIAELTGIPV 37 (64)
T ss_pred CCcHHHHHHHHHHHHCCCH
Confidence 4578888888888887764
Done!