Query 033753
Match_columns 112
No_of_seqs 193 out of 1061
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 09:33:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033753.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033753hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l9f_A CALE8, meacp; transfera 99.5 8.1E-15 2.8E-19 101.7 6.2 54 58-112 11-65 (102)
2 2kci_A Putative acyl carrier p 99.5 4.9E-14 1.7E-18 94.2 5.4 51 61-112 2-53 (87)
3 3gzm_A Acyl carrier protein; h 99.4 4.2E-13 1.4E-17 86.1 5.6 54 58-112 2-56 (81)
4 2ava_A ACP I, acyl carrier pro 99.4 7.3E-13 2.5E-17 84.6 6.5 55 58-112 1-55 (82)
5 3ejb_A Acyl carrier protein; p 99.4 6.3E-13 2.2E-17 89.3 6.2 55 57-112 18-73 (97)
6 1f80_D Acyl carrier protein; t 99.4 6.6E-13 2.3E-17 84.5 5.8 55 57-112 3-58 (81)
7 1dv5_A APO-DCP, APO-D-alanyl c 99.4 6.1E-13 2.1E-17 85.9 5.6 54 58-112 1-55 (80)
8 2lol_A ACP, acyl carrier prote 99.4 1.3E-12 4.4E-17 83.1 6.7 55 57-112 2-57 (81)
9 2lki_A Putative uncharacterize 99.4 5.4E-13 1.8E-17 91.5 5.1 61 51-112 14-78 (105)
10 2kwl_A ACP, acyl carrier prote 99.4 7.7E-13 2.6E-17 85.0 5.5 55 57-112 5-60 (84)
11 4dxe_H ACP, acyl carrier prote 99.4 8.2E-13 2.8E-17 89.9 5.7 54 58-112 23-77 (101)
12 1vku_A Acyl carrier protein; T 99.4 1.2E-12 4.2E-17 88.9 6.5 56 56-112 12-67 (100)
13 1x3o_A Acyl carrier protein; s 99.3 2.1E-12 7.1E-17 81.5 6.5 55 57-112 1-56 (80)
14 2qnw_A Acyl carrier protein; m 99.3 1.3E-12 4.6E-17 83.7 5.7 55 57-112 3-58 (82)
15 2cnr_A FAS, ACP, acyl carrier 99.3 3E-12 1E-16 81.2 7.0 55 57-112 3-58 (82)
16 2l4b_A Acyl carrier protein; i 99.3 7.1E-13 2.4E-17 86.2 3.7 55 57-112 4-62 (88)
17 2kw2_A Specialized acyl carrie 99.3 1.9E-12 6.4E-17 87.3 5.7 51 61-112 3-54 (101)
18 2dnw_A Acyl carrier protein; A 99.3 4.7E-12 1.6E-16 84.5 7.3 57 55-112 9-66 (99)
19 2kjs_A Putative acyl carrier p 99.3 2.6E-12 9E-17 85.4 5.8 50 62-112 3-53 (87)
20 1af8_A Actinorhodin polyketide 99.3 1.3E-12 4.3E-17 84.3 3.8 54 58-112 2-59 (86)
21 2jq4_A AGR_C_4658P, hypothetic 99.3 2.2E-12 7.4E-17 88.0 5.1 56 57-112 18-74 (105)
22 2lte_A Specialized acyl carrie 98.9 3.1E-13 1.1E-17 92.2 0.0 62 50-112 13-76 (103)
23 3ce7_A Specific mitochodrial a 99.3 7.1E-12 2.4E-16 85.9 6.6 54 57-112 15-74 (107)
24 1klp_A ACP, ACPM, meromycolate 99.3 9.3E-12 3.2E-16 85.3 7.2 55 57-112 3-58 (115)
25 2amw_A Hypothetical protein NE 99.3 5.8E-12 2E-16 81.2 5.2 51 61-112 2-56 (83)
26 1l0i_A Acyl carrier protein; a 99.2 8.3E-12 2.8E-16 78.8 5.2 52 60-112 2-54 (78)
27 2ehs_A ACP, acyl carrier prote 99.2 3.4E-11 1.2E-15 75.1 5.5 51 61-112 1-52 (77)
28 1or5_A Acyl carrier protein; A 99.2 1.2E-11 3.9E-16 79.3 3.3 53 60-112 3-57 (83)
29 2cgq_A Acyl carrier protein AC 99.2 2.1E-11 7.3E-16 84.9 4.9 48 59-112 28-76 (113)
30 2l3v_A ACP, acyl carrier prote 99.1 8.2E-12 2.8E-16 78.8 1.4 52 60-112 3-55 (79)
31 2cg5_B Fatty acid synthase; tr 99.1 5.4E-11 1.8E-15 80.3 5.4 49 64-112 9-57 (91)
32 1nq4_A Oxytetracycline polyket 99.1 4.5E-11 1.5E-15 79.7 4.6 51 62-112 5-58 (95)
33 1fh1_A NODF, nodulation protei 99.1 7.9E-12 2.7E-16 82.5 0.9 53 60-112 3-62 (92)
34 2kr5_A PKS, aflatoxin biosynth 99.0 3.1E-10 1.1E-14 73.0 5.1 54 58-112 8-61 (89)
35 2afd_A Protein ASL1650; twiste 99.0 8.1E-10 2.8E-14 70.2 6.4 55 57-112 10-64 (88)
36 2liu_A CURA; holo state, trans 99.0 9.6E-10 3.3E-14 71.4 6.5 55 57-112 17-71 (99)
37 2l22_A Mupirocin didomain acyl 98.9 2.7E-09 9.3E-14 78.8 6.0 55 57-112 22-76 (212)
38 2ju1_A Erythronolide synthase; 98.8 2.8E-09 9.7E-14 69.1 4.7 53 59-112 18-71 (95)
39 1dny_A Non-ribosomal peptide s 98.7 3E-08 1E-12 65.1 6.4 52 58-112 11-62 (91)
40 4i4d_A Peptide synthetase NRPS 98.7 3.7E-08 1.3E-12 64.6 6.6 51 59-112 14-64 (93)
41 2l22_A Mupirocin didomain acyl 98.6 6.7E-08 2.3E-12 71.3 6.9 54 58-112 127-180 (212)
42 3tej_A Enterobactin synthase c 98.1 5.2E-06 1.8E-10 63.7 5.9 52 58-112 8-59 (329)
43 2cq8_A 10-formyltetrahydrofola 97.9 2E-05 6.7E-10 54.6 5.0 50 59-111 23-74 (110)
44 2jgp_A Tyrocidine synthetase 3 97.6 0.00011 3.6E-09 59.1 6.2 51 58-111 7-57 (520)
45 2fq1_A Isochorismatase; ENTB, 97.3 0.00024 8E-09 54.7 4.6 46 63-111 217-262 (287)
46 2vsq_A Surfactin synthetase su 96.8 0.00092 3.2E-08 60.3 4.2 53 57-112 968-1020(1304)
47 4f6l_B AUSA reductase domain p 96.4 0.00049 1.7E-08 55.8 0.0 50 58-111 42-91 (508)
48 2vz8_A Fatty acid synthase; tr 96.2 0.0008 2.7E-08 65.3 0.0 49 63-111 2125-2173(2512)
49 4dg8_A PA1221; ANL superfamily 95.8 0.0016 5.4E-08 54.5 0.0 51 58-111 521-572 (620)
50 3rg2_A Enterobactin synthase c 95.7 0.0082 2.8E-07 49.6 4.1 47 61-110 545-591 (617)
51 1dd4_C 50S ribosomal protein L 90.0 0.22 7.6E-06 28.6 2.5 20 93-112 13-32 (40)
52 1zav_U 50S ribosomal protein L 83.5 0.79 2.7E-05 24.7 2.3 18 93-110 13-30 (30)
53 3zen_D Fatty acid synthase; tr 66.8 1.2 4E-05 44.8 0.0 50 61-111 1794-1844(3089)
54 3b1l_X E3 ubiquitin-protein li 39.7 8.8 0.0003 22.6 0.0 47 59-105 19-73 (76)
55 3u5e_m 60S ribosomal protein L 32.1 9.6 0.00033 25.5 0.0 47 59-105 19-73 (128)
56 1uhr_A SWI/SNF related, matrix 32.1 37 0.0013 21.9 2.9 53 57-109 27-82 (93)
57 1otf_A 4-oxalocrotonate tautom 29.8 41 0.0014 18.7 2.6 22 57-78 14-35 (62)
58 2opa_A Probable tautomerase YW 29.6 42 0.0014 18.6 2.6 22 57-78 14-35 (61)
59 3u5c_f 40S ribosomal protein S 29.0 12 0.0004 26.4 0.0 48 59-106 19-74 (152)
60 3m20_A 4-oxalocrotonate tautom 29.0 57 0.0019 18.6 3.1 22 57-78 13-34 (62)
61 1v32_A AT5G08430, hypothetical 28.8 32 0.0011 22.9 2.1 54 56-109 34-90 (101)
62 3abf_A 4-oxalocrotonate tautom 27.7 44 0.0015 18.7 2.5 22 57-78 15-36 (64)
63 2pjh_A Protein NPL4, nuclear p 26.6 65 0.0022 19.8 3.3 26 52-78 16-41 (80)
64 3m21_A Probable tautomerase HP 24.9 56 0.0019 18.9 2.6 22 57-78 17-38 (67)
65 3ry0_A Putative tautomerase; o 23.1 64 0.0022 18.4 2.6 22 57-78 14-35 (65)
66 2x4k_A 4-oxalocrotonate tautom 23.0 67 0.0023 17.5 2.6 22 57-78 17-38 (63)
67 1wf9_A NPL4 family protein; be 21.8 83 0.0028 20.1 3.2 26 53-78 20-45 (107)
68 3n3k_B Ubiquitin; hydrolase, p 21.5 47 0.0016 19.6 1.8 45 52-97 16-68 (85)
69 2dzi_A Ubiquitin-like protein 21.3 64 0.0022 18.7 2.4 36 60-95 27-70 (81)
70 3mb2_A 4-oxalocrotonate tautom 20.7 64 0.0022 18.9 2.3 22 57-78 15-36 (72)
71 3a9j_A Ubiquitin; protein comp 20.1 54 0.0019 18.6 1.8 36 60-95 20-63 (76)
72 1v31_A Hypothetical protein RA 20.0 38 0.0013 21.8 1.2 53 57-109 27-82 (93)
No 1
>2l9f_A CALE8, meacp; transferase, acyl carrier protein; NMR {Micromonospora echinospora}
Probab=99.54 E-value=8.1e-15 Score=101.68 Aligned_cols=54 Identities=22% Similarity=0.250 Sum_probs=50.4
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753 58 AKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
+-.+|+++|++||.+++++++ +.|+|+++|. |||+||||+|||+|.+|++||+.
T Consensus 11 ~~~~I~~~V~~ilaE~lev~~-e~Vtpda~l~dDLglDSLd~VeLVm~lE~~fGi~ 65 (102)
T 2l9f_A 11 AATGALELVRHLVAERAELPV-EVLRDDSRFLDDLHMSSITVGQLVNEAARAMGLS 65 (102)
T ss_dssp SSCCHHHHHHHHHHHHTTSCS-SSCCTTCBTTTTSCCCHHHHHHHHHHHHHHHTCS
T ss_pred hHHHHHHHHHHHHHHHHCCCH-HHcCCCcchhhhcCCcHHHHHHHHHHHHHHhCCC
Confidence 346899999999999999997 7999999997 99999999999999999999984
No 2
>2kci_A Putative acyl carrier protein; alpha, ACP, PCP, structural genomics, unknown function, PSI- 2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 2kjs_A* 2lml_A* 2kwm_A*
Probab=99.47 E-value=4.9e-14 Score=94.21 Aligned_cols=51 Identities=22% Similarity=0.242 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753 61 ETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 61 ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
+++++|++|+++++++++ .+++++++|. |||+|||+.+||+++||++|||.
T Consensus 2 ~i~ekv~~il~e~l~~d~-~~i~~d~~l~~dlg~DSL~~veli~~lE~eF~I~ 53 (87)
T 2kci_A 2 PTLDALTPIFRQVFDDDS-IVLTRETSANDIDAWDSLSHMNLIVSLEVHYKIK 53 (87)
T ss_dssp CSHHHHHHHHHHHTTCSC-CCCCTTCCSTTCCCCCSTHHHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHHHHHhCCCH-HHCCCCCCcccccCCChHHHHHHHHHHHHHHCCc
Confidence 478999999999999986 6999999998 79999999999999999999984
No 3
>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} SCOP: a.28.1.0 PDB: 3gzl_A* 2fq0_A* 2fq2_A*
Probab=99.39 E-value=4.2e-13 Score=86.08 Aligned_cols=54 Identities=31% Similarity=0.486 Sum_probs=50.4
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753 58 AKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
+++++.++|++++++.+++++ ++++++++|. |||+|||+.+||++.||++||+.
T Consensus 2 ~~~~i~~~l~~ii~~~l~~~~-~~i~~d~~l~~dlg~DSl~~vel~~~le~~fgi~ 56 (81)
T 3gzm_A 2 SLKSTFDDIKKIISKQLSVEE-DKIQMNSNFTKDLGADSLDLVELIMALEEKFNVT 56 (81)
T ss_dssp CHHHHHHHHHHHHHHHHTCCG-GGCCTTCBHHHHSCCCHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHHHhCcCH-HHCCCCCcchhhcCCCHHHHHHHHHHHHHHHCCC
Confidence 468999999999999999986 6999999995 99999999999999999999984
No 4
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=99.39 E-value=7.3e-13 Score=84.62 Aligned_cols=55 Identities=47% Similarity=0.642 Sum_probs=50.2
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753 58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
+++++.++|++++++.+++++..+++++++|.|||+|||+.+||++.||++||+.
T Consensus 1 ~~~~i~~~l~~i~~~~l~~~~~~~i~~~~~l~dlG~DSl~~vel~~~le~~fgi~ 55 (82)
T 2ava_A 1 AKKETIDKVSDIVKEKLALGADVVVTADSEFSKLGADSLDTVEIVMNLEEEFGIN 55 (82)
T ss_dssp CCHHHHHHHHHHHHHHTTCSSSSCCCSSCCSCCCTTCCSCHHHHHHHHHHHTTCC
T ss_pred ChHHHHHHHHHHHHHHhCCCcccccCCCCchhhcCCCHHHHHHHHHHHHHHHCCc
Confidence 4678999999999999999862389999999999999999999999999999984
No 5
>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A*
Probab=99.38 E-value=6.3e-13 Score=89.26 Aligned_cols=55 Identities=35% Similarity=0.444 Sum_probs=51.3
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 57 ~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
.+++++.++|++++++.+++++ ++|+++++|. |||+|||+.+||++.||++|||.
T Consensus 18 ~t~~~i~~~l~~iia~~l~~~~-~~i~~d~~l~~dLGlDSL~~vel~~~lE~~fgi~ 73 (97)
T 3ejb_A 18 SHMSTIEERVKKIIGEQLGVKQ-EEVTNNASFVEDLGADSLDTVELVMALEEEFDTE 73 (97)
T ss_dssp CCCCCHHHHHHHHHHHHSCCCT-TTSCTTCBTTTTTCCCTTHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHHHHCcCH-HHCCCCCCchhhcCCCHHHHHHHHHHHHHHHCCC
Confidence 4778999999999999999986 6999999995 99999999999999999999984
No 6
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=99.38 E-value=6.6e-13 Score=84.48 Aligned_cols=55 Identities=27% Similarity=0.463 Sum_probs=50.0
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCCCCCCCCCc-cccCCchhhHHHHHHHHHHHcCCC
Q 033753 57 SAKPETVQKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 57 ~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f-~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
++++++.++|++++++.+++++ ++++++++| .|||+|||+.+|+++.||++||+.
T Consensus 3 m~~~~i~~~l~~~l~~~l~~~~-~~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~ 58 (81)
T 1f80_D 3 LGSADTLERVTKIIVDRLGVDE-ADVKLEASFKEDLGADXLDVVELVMELEDEFDME 58 (81)
T ss_dssp --CCHHHHHHHHHHHHHSSCCS-SCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHHHHCCCH-HhCCCccchHHHcCCcHHHHHHHHHHHHHHhCCc
Confidence 4678999999999999999986 699999999 699999999999999999999984
No 7
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=99.38 E-value=6.1e-13 Score=85.88 Aligned_cols=54 Identities=20% Similarity=0.167 Sum_probs=49.4
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccC-CchhhHHHHHHHHHHHcCCC
Q 033753 58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALG-ADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG-~DSLD~vEIv~~LEeeFgI~ 112 (112)
+++++.++|+++|++.++.++ .+++++++|.++| +|||+++||+++||++|||.
T Consensus 1 ~~~~i~~~i~~il~~~~~~~~-~~i~~d~~l~~~g~lDSl~~velv~~lE~~fgi~ 55 (80)
T 1dv5_A 1 ADEAIKNGVLDILADLTGSDD-VKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVD 55 (80)
T ss_dssp CCHHHHHHHHHHHHHHHTSSS-TTTCSSCCSSTTSSCCSHHHHHHHHHHTTTSCCC
T ss_pred CHHHHHHHHHHHHHHHhCCCc-ccCCCCcchhhccCcChHHHHHHHHHHHHHhCCc
Confidence 367899999999999999875 6899999999888 99999999999999999984
No 8
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=99.37 E-value=1.3e-12 Score=83.10 Aligned_cols=55 Identities=35% Similarity=0.431 Sum_probs=50.8
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 57 ~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
++++++.++|++++++.+++++ ++++++++|. |||+|||+.+|++..||++||+.
T Consensus 2 m~~~~i~~~l~~ii~~~l~~~~-~~i~~~~~l~~dlG~DSl~~~el~~~le~~fgi~ 57 (81)
T 2lol_A 2 STTDKIEQKVIEMVAEKLNKDK-AIITTDSRFIEDLKADSLDTVELMMAIEVEYGID 57 (81)
T ss_dssp CSHHHHHHHHHHHHHHHSCCCT-TTCCTTCCHHHHTTCCHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHHHHHCCCh-hhCCCCCcHHHhcCCcHHHHHHHHHHHHHHHCCC
Confidence 3678999999999999999986 6999999994 99999999999999999999984
No 9
>2lki_A Putative uncharacterized protein; helical bundle, acyl carrier, phosphopantetheine, fatty acid biosynthesis, lipid synthesis, PSI-biology; HET: PNS; NMR {Nitrosomonas europaea}
Probab=99.36 E-value=5.4e-13 Score=91.47 Aligned_cols=61 Identities=20% Similarity=0.240 Sum_probs=48.6
Q ss_pred cccccCCChHHHHHHHHHHHHHhcCCC--CCCCCCCCCCcc-ccCC-chhhHHHHHHHHHHHcCCC
Q 033753 51 RFCVSCSAKPETVQKVCEIVRRQLALP--AETELTSESKFS-ALGA-DSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 51 r~~v~~~~~~ei~ekV~eIl~~~l~l~--~~~~It~es~f~-DLG~-DSLD~vEIv~~LEeeFgI~ 112 (112)
|-++.|..+.++.++|+++|++.++++ + .+|+++++|. |||+ |||+++||+++||++|||.
T Consensus 14 ~~~~~~~~~m~i~~~i~~il~e~l~~~~~~-~~i~~d~~L~~dLGl~DSL~~veLi~~lE~~FgI~ 78 (105)
T 2lki_A 14 RENLYFQGHMQHLEAVRNILGDVLNLGERK-HTLTASSVLLGNIPELDSMAVVNVITALEEYFDFS 78 (105)
T ss_dssp ---------CCTHHHHHHHHHHHTTCTTGG-GTCCTTSBCBTTBTTCCHHHHHHHHHHHHHHHTSC
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHhCCCccc-ccCCCCCchhhhcCcccHHHHHHHHHHHHHHhCCC
Confidence 556667777789999999999999987 4 6899999998 8999 9999999999999999984
No 10
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=99.36 E-value=7.7e-13 Score=85.02 Aligned_cols=55 Identities=35% Similarity=0.401 Sum_probs=51.3
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCCCCCCCCCc-cccCCchhhHHHHHHHHHHHcCCC
Q 033753 57 SAKPETVQKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 57 ~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f-~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
++++++.++|++++++.+++++ ++++++++| .|||+|||+.+|+++.||++||+.
T Consensus 5 m~~~~i~~~l~~~i~~~l~~~~-~~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~ 60 (84)
T 2kwl_A 5 MDNDEIFSKVRSIISEQLDKKE-DEITTDSRFVEDLNADSLDIYELLYLLEEAFDDK 60 (84)
T ss_dssp STHHHHHHHHHHHHHHHHCCCG-GGCCTTTHHHHTSSSCHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHHhCCCc-ccCCCCCchhhhcCCCHHHHHHHHHHHHHHHCCC
Confidence 4688999999999999999986 699999999 699999999999999999999984
No 11
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=99.36 E-value=8.2e-13 Score=89.89 Aligned_cols=54 Identities=31% Similarity=0.412 Sum_probs=49.6
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCc-cccCCchhhHHHHHHHHHHHcCCC
Q 033753 58 AKPETVQKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f-~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
.+.++.++|+++|++.+++++ ++|+++++| .|||+|||+.+||++.||++|||.
T Consensus 23 ~~mei~~~l~~iiae~l~~~~-~~I~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~ 77 (101)
T 4dxe_H 23 NAMENFDKVKDIIVDRLGVDA-DKVTEDASFKDDLGADSLDIAELVMELEDEFGTE 77 (101)
T ss_dssp -CTTHHHHHHHHHHHTTCCCG-GGCCTTCBTTTTSCCCHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHHHCcCh-hhCCCCCcchhhcCCCcHHHHHHHHHHHHHHCCC
Confidence 456899999999999999986 799999999 599999999999999999999984
No 12
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1
Probab=99.36 E-value=1.2e-12 Score=88.86 Aligned_cols=56 Identities=21% Similarity=0.359 Sum_probs=52.3
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753 56 CSAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 56 ~~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
-+.++++.++|+++|++.+++++ .+|+++++|.|||+|||+.+||++.||++|||.
T Consensus 12 ~~~~~~i~~~l~~ila~~l~v~~-~~I~~d~~L~dLGlDSL~~veL~~~LE~~fgi~ 67 (100)
T 1vku_A 12 HMERKKLIAKFVEIASEKMGKDL-ETVDEENTFKELGFDSIDVIDLVMFFEDEFALR 67 (100)
T ss_dssp TTHHHHHHHHHHHHHHHTTCCCC-CSCCTTSBTTTTTCCHHHHHHHHHHHHHHHTCC
T ss_pred hccHHHHHHHHHHHHHHHHCCCH-HHCCCCCCHHHcCCchHHHHHHHHHHHHHHCCC
Confidence 35789999999999999999986 699999999999999999999999999999984
No 13
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=99.34 E-value=2.1e-12 Score=81.47 Aligned_cols=55 Identities=35% Similarity=0.456 Sum_probs=50.9
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCCCCCCCCCc-cccCCchhhHHHHHHHHHHHcCCC
Q 033753 57 SAKPETVQKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 57 ~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f-~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
++++++.++|++++++.+++++ ++++++++| .|||+|||+.+|++..||++||+.
T Consensus 1 M~~~~i~~~l~~~i~~~l~~~~-~~i~~~~~l~~~lG~DSl~~~~l~~~le~~fgi~ 56 (80)
T 1x3o_A 1 MTEQEIFEKVKAVIADKLQVEP-EKVTLEARFIEDLGADSLDTVELIMGLEDEFGLE 56 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCG-GGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHHHHhCCCH-HHCCCcCcHHhhcCccHHHHHHHHHHHHHHHCCC
Confidence 4678999999999999999986 689999999 699999999999999999999974
No 14
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii}
Probab=99.34 E-value=1.3e-12 Score=83.72 Aligned_cols=55 Identities=29% Similarity=0.437 Sum_probs=50.7
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCCCCCCCCCc-cccCCchhhHHHHHHHHHHHcCCC
Q 033753 57 SAKPETVQKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 57 ~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f-~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
..++++.++|++++++.+++++ ++++++++| .|||+|||+.+|+++.||++||+.
T Consensus 3 ~~~~~i~~~l~~ii~~~l~~~~-~~i~~d~~l~~dlG~DSl~~vel~~~le~~fgi~ 58 (82)
T 2qnw_A 3 SDDRPLLERVKDVVADQLGVDR-ARINPESNFIKDLDADSLDSVELVMAFEEKFGVS 58 (82)
T ss_dssp CCSHHHHHHHHHHHHHHHCCCG-GGCCTTCBHHHHSCCCHHHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHHHHHHCCCH-hhCCCccchhhccCCcHHHHHHHHHHHHHHHCCc
Confidence 3578899999999999999986 699999999 599999999999999999999984
No 15
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=99.34 E-value=3e-12 Score=81.24 Aligned_cols=55 Identities=22% Similarity=0.383 Sum_probs=51.1
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 57 ~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
++++++.++|++++++.+++++ ++++++++|. |||+|||+.+|++..||++||+.
T Consensus 3 m~~~~i~~~l~~~i~~~l~~~~-~~i~~~~~l~~dlG~DSl~~~~l~~~le~~fgi~ 58 (82)
T 2cnr_A 3 ATQEEIVAGLAEIVNEIAGIPV-EDVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVK 58 (82)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCT-TTCCTTSBTTTTSCCCHHHHHHHHHHHHGGGTBC
T ss_pred CCHHHHHHHHHHHHHHHhCCCH-HHCCCCcchhhccCCChHHHHHHHHHHHHHhCCC
Confidence 4688999999999999999986 6999999995 99999999999999999999974
No 16
>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum}
Probab=99.33 E-value=7.1e-13 Score=86.17 Aligned_cols=55 Identities=25% Similarity=0.225 Sum_probs=50.1
Q ss_pred CChHHHHHHHHHHHHHhc---CCCCCCCCCCCCCc-cccCCchhhHHHHHHHHHHHcCCC
Q 033753 57 SAKPETVQKVCEIVRRQL---ALPAETELTSESKF-SALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 57 ~~~~ei~ekV~eIl~~~l---~l~~~~~It~es~f-~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
++++++.++|+++|++.+ ++++ ++|+++++| .|||+|||+.+||++.||++|||.
T Consensus 4 m~~~~i~~~v~~~i~~~l~~~~~~~-~~i~~d~~l~~dlglDSl~~vel~~~lE~~fgi~ 62 (88)
T 2l4b_A 4 MVSEEIKAQVMESVIGCLKLNDEQK-QILSGTTNLAKDFNLDSLDFVDLIMSLEERFSLE 62 (88)
T ss_dssp SSCHHHHHHHHHHHHHHHTCCHHHH-HSCCTTSCTTTTTTCCHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCH-hhCCCCCchhhccCCcHHHHHHHHHHHHHHHCCC
Confidence 467899999999999999 6665 689999999 599999999999999999999984
No 17
>2kw2_A Specialized acyl carrier protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} PDB: 2ll8_A* 2lpk_A 3lmo_A
Probab=99.32 E-value=1.9e-12 Score=87.27 Aligned_cols=51 Identities=25% Similarity=0.412 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753 61 ETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 61 ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
++.++|+++|++.+++++ .+|+++++|. |||+|||+.+||++.||++|||.
T Consensus 3 ~i~~~v~~ii~~~l~~~~-~~i~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~ 54 (101)
T 2kw2_A 3 STFDRVATIIAETCDIPR-ETITPESHAIDDLGIDSLDFLDIAFAIDKAFGIK 54 (101)
T ss_dssp CHHHHHHHHHHHHHCCCG-GGCCTTCBCCCCCCCCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCCH-hhCCCCcchHHhcCCCHHHHHHHHHHHHHHHCCc
Confidence 689999999999999986 7999999994 99999999999999999999984
No 18
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=4.7e-12 Score=84.48 Aligned_cols=57 Identities=19% Similarity=0.228 Sum_probs=52.3
Q ss_pred cCCChHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753 55 SCSAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 55 ~~~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
+.++++++.++|++++++.+++++ ++|+++++|. |||+|||+.+||++.||++|||.
T Consensus 9 ~~m~~~~i~~~l~~~l~~~l~~~~-~~i~~d~~l~~dlG~DSL~~vel~~~le~~fgi~ 66 (99)
T 2dnw_A 9 PPLTLEGIQDRVLYVLKLYDKIDP-EKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFE 66 (99)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTSCT-TTCCTTCCCCCCCCCCHHHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCH-hhCCCCCchhhhcCCCHHHHHHHHHHHHHHHCCC
Confidence 345789999999999999999986 6999999995 99999999999999999999984
No 19
>2kjs_A Putative acyl carrier protein; alpha, ACP, PNS, structural genomics, PSI-2, protein structure initiative; HET: PNS; NMR {Geobacter metallireducens gs-15} PDB: 2lml_A* 2kwm_A*
Probab=99.31 E-value=2.6e-12 Score=85.37 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753 62 TVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 62 i~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
++++|++|++++|++++ ..|+++++|. +||+|||+.+||++.||++|||.
T Consensus 3 tle~l~~I~~e~l~~d~-~~i~~~~~~~d~lg~DSL~~veli~~ie~~fgi~ 53 (87)
T 2kjs_A 3 TLDALTPIFRQVFDDDS-IVLTRETSANDIDAWDSLSHMNLIVSLEVHYKIK 53 (87)
T ss_dssp SHHHHHHHHHHHHTCSS-CCCCTTCCSTTCSCCCHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHhCCCc-cccCCCCCcccCCCCChHHHHHHHHHHHHHhCce
Confidence 68899999999999987 7999999998 58999999999999999999984
No 20
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A*
Probab=99.30 E-value=1.3e-12 Score=84.32 Aligned_cols=54 Identities=15% Similarity=0.065 Sum_probs=48.6
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCC----CCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753 58 AKPETVQKVCEIVRRQLALPAET----ELTSESKFSALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 58 ~~~ei~ekV~eIl~~~l~l~~~~----~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
+++.+.++|++++++.+++++ . +++++++|.|||+|||+.+||++.||++||+.
T Consensus 2 ~~~~~~~~l~~il~~~l~~~~-~~~~~~i~~~~~l~dlG~DSL~~vel~~~le~~fgi~ 59 (86)
T 1af8_A 2 ATLLTTDDLRRALVECAGETD-GTDLSGDFLDLRFEDIGYDSLALMETAARLESRYGVS 59 (86)
T ss_dssp CCSSCHHHHHHHHHTTCCCCS-CCCTTTCSSTTSTTTTTCCTTTHHHHHHHHTTTTCSC
T ss_pred chHHHHHHHHHHHHHHhCCCc-ccccccCCCCCChhhcCCCHHHHHHHHHHHHHHHCCC
Confidence 346688999999999999985 4 68999999999999999999999999999984
No 21
>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, S genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1
Probab=99.30 E-value=2.2e-12 Score=87.98 Aligned_cols=56 Identities=20% Similarity=0.231 Sum_probs=45.9
Q ss_pred CChHHHHHHHHHHHHHhcCCC-CCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753 57 SAKPETVQKVCEIVRRQLALP-AETELTSESKFSALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 57 ~~~~ei~ekV~eIl~~~l~l~-~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
..++++.++|+++|++.++++ +..+|+++++|.|||+|||+++||++.||++|||.
T Consensus 18 ~~~~~i~~~i~~il~~~l~~~v~~~~i~~d~~l~dlGlDSL~~veLv~~lE~~fgI~ 74 (105)
T 2jq4_A 18 YFQGHMNATIREILAKFGQLPTPVDTIADEADLYAAGLSSFASVQLMLGIEEAFDIE 74 (105)
T ss_dssp -----CHHHHHHHHHHTSCCSSCGGGCCTTSCGGGGTCCHHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHHHHHhccCCCcccCCCCCCHhhcCCCHHHHHHHHHHHHHHHCCC
Confidence 467899999999999987643 12689999999999999999999999999999984
No 22
>2lte_A Specialized acyl carrier protein; APO protein, transferase; NMR {Pseudomonas aeruginosa}
Probab=98.94 E-value=3.1e-13 Score=92.16 Aligned_cols=62 Identities=18% Similarity=0.246 Sum_probs=54.6
Q ss_pred ccccccCCCh--HHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753 50 NRFCVSCSAK--PETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 50 ~r~~v~~~~~--~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
.|+.+.++++ .++.++|+++|++.+++++ ++|+++++|.|||+|||+.+||++.||++|||.
T Consensus 13 ~~~~~~~~~~M~~ei~~~l~~ila~~l~i~~-~~I~~d~~l~dLGlDSL~~veL~~~lE~~fgi~ 76 (103)
T 2lte_A 13 GRENLYFQGHMPNDMEDHLLTVLSVASGVPK-EEISRDSRMEDLAFDSLVVSELSLKLRKEFGVT 76 (103)
Confidence 3666667663 3599999999999999986 699999999999999999999999999999973
No 23
>3ce7_A Specific mitochodrial acyl carrier protein; malaria, mitochondrial, ACP, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.64A {Toxoplasma}
Probab=99.28 E-value=7.1e-12 Score=85.90 Aligned_cols=54 Identities=19% Similarity=0.216 Sum_probs=49.7
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCCCCCCCCCc------cccCCchhhHHHHHHHHHHHcCCC
Q 033753 57 SAKPETVQKVCEIVRRQLALPAETELTSESKF------SALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 57 ~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f------~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
++.+++.++|+++|++.++ +. .+|+++++| .|||+|||+++||++.||++|||.
T Consensus 15 ~~~~~i~~~i~~il~e~l~-~~-~~i~~d~~l~~~~~~~dLglDSL~~veli~~lE~~fgi~ 74 (107)
T 3ce7_A 15 TDINAVTNYIVGMCQKFLQ-KG-EKVTPSSKLEELRTREDRLWDCLDTVEFVLDVEEIFDVT 74 (107)
T ss_dssp TCHHHHHHHHHHHHHTTBC-TT-CCCCTTSCGGGSBBTTSSBCCHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHHhC-Cc-cccCCCCcccccCcccccCCCHHHHHHHHHHHHHHHCCC
Confidence 4678999999999999999 64 799999999 599999999999999999999984
No 24
>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1
Probab=99.27 E-value=9.3e-12 Score=85.29 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=51.2
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 57 ~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
++++++.++|++++++.+++++ ++|+++++|. |||+|||+.+||++.||++||+.
T Consensus 3 m~~~~i~~~l~~il~~~l~~~~-~~i~~d~~l~~dlG~DSL~~vel~~~lE~~fgi~ 58 (115)
T 1klp_A 3 VTQEEIIAGIAEIIEEVTGIEP-SEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVK 58 (115)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCT-TTCCTTCCTTTTTCSHHHHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHHHhCcCH-HhCCCCCchhhccCCCHHHHHHHHHHHHHHHCCC
Confidence 5678999999999999999986 6999999995 99999999999999999999984
No 25
>2amw_A Hypothetical protein NE2163; all helical protein, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=99.26 E-value=5.8e-12 Score=81.17 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhcCCC--CCCCCCCCCCcc-ccCC-chhhHHHHHHHHHHHcCCC
Q 033753 61 ETVQKVCEIVRRQLALP--AETELTSESKFS-ALGA-DSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 61 ei~ekV~eIl~~~l~l~--~~~~It~es~f~-DLG~-DSLD~vEIv~~LEeeFgI~ 112 (112)
++.++|++++++.++++ + .+++++++|. |||+ |||+++|+++.||++|||.
T Consensus 2 ~i~~~l~~il~~~l~~~~~~-~~i~~d~~l~~dlg~~DSl~~~elv~~lE~~fgi~ 56 (83)
T 2amw_A 2 QHLEAVRNILGDVLNLGERK-HTLTASSVLLGNIPELDSMAVVNVITALEEYFDFS 56 (83)
T ss_dssp CTHHHHHHHHHHHTTCGGGG-GSCCTTSCSTTTSTTTTHHHHHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHhCCCCcc-ccCCCcchhhhccCccCHHHHHHHHHHHHHHhCCe
Confidence 46789999999999987 4 6999999998 8999 9999999999999999984
No 26
>1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A
Probab=99.25 E-value=8.3e-12 Score=78.81 Aligned_cols=52 Identities=35% Similarity=0.470 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753 60 PETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 60 ~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
+++.++|++++++.+++++ ++++++++|. |||+|||+.+|++..||++||+.
T Consensus 2 ~~i~~~l~~~~~~~l~~~~-~~i~~~~~l~~dlG~DSl~~~el~~~le~~fgi~ 54 (78)
T 1l0i_A 2 STIEERVKKIIGEQLGVKQ-EEVTNNASFVEDLGADSLDTVELVMALEEEFDTE 54 (78)
T ss_dssp CCHHHHHHHHHHHHHTCCG-GGCCTTCBTTTTSCCCHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHHhCCCH-HHCCCCcchhhhcCCCHHHHHHHHHHHHHHhCCC
Confidence 3688999999999999986 6999999995 99999999999999999999974
No 27
>2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national proje protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eht_A
Probab=99.18 E-value=3.4e-11 Score=75.15 Aligned_cols=51 Identities=35% Similarity=0.506 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCc-cccCCchhhHHHHHHHHHHHcCCC
Q 033753 61 ETVQKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 61 ei~ekV~eIl~~~l~l~~~~~It~es~f-~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
++.++|++++++.+++++ ++++++++| .|||+|||+.++++..||++||+.
T Consensus 1 ~i~~~l~~~~~~~l~~~~-~~i~~~~~l~~~lG~DSl~~~~l~~~le~~~gi~ 52 (77)
T 2ehs_A 1 SLEERVKEIIAEQLGVEK-EKITPEAKFVEDLGADSLDVVELIMAFEEEFGIE 52 (77)
T ss_dssp CHHHHHHHHHHHHHCCCG-GGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHhCCCh-hhCCCccchhhccCCCHHHHHHHHHHHHHHhCCc
Confidence 377899999999999986 689999999 799999999999999999999974
No 28
>1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo, polyketide synthase, PKS, biosynthetic protein; NMR {Streptomyces roseofulvus} SCOP: a.28.1.1
Probab=99.18 E-value=1.2e-11 Score=79.29 Aligned_cols=53 Identities=19% Similarity=0.269 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCC--CCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753 60 PETVQKVCEIVRRQLALPAETELT--SESKFSALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 60 ~ei~ekV~eIl~~~l~l~~~~~It--~es~f~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
+.+.++|++++++.+++++..+++ ++++|.|||+|||+.+||+..||++||+.
T Consensus 3 ~~~~~~l~~~l~~~l~~~~~~~i~~~~~~~~~dlG~DSL~~vel~~~le~~fgi~ 57 (83)
T 1or5_A 3 ALTVDDLKKLLAETAGEDDSVDLAGELDTPFVDLGYDSLALLETAAVLQQRYGIA 57 (83)
T ss_dssp CSCHHHHHHHHHHHSCCCSSCCGGGCSSSCHHHHSCCHHHHHHHHHHHHTTSCCC
T ss_pred hHHHHHHHHHHHHHhCCCcccccCCCCCCcHHHhCCCHHHHHHHHHHHHHHHCCc
Confidence 457889999999999998622798 99999999999999999999999999984
No 29
>2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopant; 1.83A {Mycobacterium tuberculosis}
Probab=99.18 E-value=2.1e-11 Score=84.85 Aligned_cols=48 Identities=21% Similarity=0.253 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753 59 KPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 59 ~~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
++++.++|+++|++.++ |+++++|. |||+|||+.+||++.||++|||.
T Consensus 28 ~~ei~~~v~~il~e~l~------I~~d~~l~~dLGlDSLd~veLi~~LEe~FgI~ 76 (113)
T 2cgq_A 28 EEAINATIQRILRTDRG------ITANQVLVDDLGFDSLKLFQLITELEDEFDIA 76 (113)
T ss_dssp HHHHHHHHHHHHTCCSC------CCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhC------CCCCCchhhhcCCCHHHHHHHHHHHHHHhCCC
Confidence 67899999999998886 78899995 99999999999999999999984
No 30
>2l3v_A ACP, acyl carrier protein; structural genomi seattle structural genomics center for infectious disease, lipid binding protein; NMR {Brucella melitensis}
Probab=99.14 E-value=8.2e-12 Score=78.84 Aligned_cols=52 Identities=35% Similarity=0.497 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCc-cccCCchhhHHHHHHHHHHHcCCC
Q 033753 60 PETVQKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 60 ~ei~ekV~eIl~~~l~l~~~~~It~es~f-~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
+++.++|++++++.+++++ ++++++++| .|||+|||+.+|++..||++||+.
T Consensus 3 ~~i~~~l~~~~~~~l~~~~-~~i~~~~~l~~~lG~DSl~~~~l~~~le~~fgi~ 55 (79)
T 2l3v_A 3 SDTAERVKKIVVEHLGVDA-DKVTEGASFIDDLGADSLDTVELVMAFEEEFGVE 55 (79)
T ss_dssp THHHHHHHHHHHHHTCCCS-TTCCTTCCHHHHTCCCSSSSSSTTTTHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhCCCH-hhCCCCCccccccCCCHHHHHHHHHHHHHHHCCC
Confidence 4799999999999999986 699999999 699999999999999999999974
No 31
>2cg5_B Fatty acid synthase; transferase-hydrolase complex, transferase/hydrolase (comple fatty acid biosynthesis, phosphopantetheine transferase; HET: COA; 2.7A {Homo sapiens} PDB: 2png_A
Probab=99.14 E-value=5.4e-11 Score=80.33 Aligned_cols=49 Identities=27% Similarity=0.359 Sum_probs=44.5
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753 64 QKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 64 ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
+.|+++|++++++++.++|+++..|.|||+|||+.|||.++||++||+.
T Consensus 9 ~~v~~~va~iLg~~~~~~I~~~~~l~dLG~DSL~aVELr~~Le~~fgi~ 57 (91)
T 2cg5_B 9 RDLVEAVAHILGIRDLAAVNLDSSLADLGLDALMSVEVRQTLERELNLV 57 (91)
T ss_dssp TTHHHHHHHHTTCCSCTTSCTTSBTTTTTCCHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHCCCchhhCCCCCCHHHhCCcchHHHHHHHHHHHHHCCC
Confidence 5788999999999744699999999999999999999999999999984
No 32
>1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1
Probab=99.13 E-value=4.5e-11 Score=79.65 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCCCCC---CCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753 62 TVQKVCEIVRRQLALPAE---TELTSESKFSALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 62 i~ekV~eIl~~~l~l~~~---~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
+.++|++++++.++++.. ++|+++++|.|||+|||+.+||++.||++|||.
T Consensus 5 t~~~l~~ii~~~l~~~~~~~~~~i~~d~~~~dlG~DSL~~vel~~~le~~fgi~ 58 (95)
T 1nq4_A 5 TLSDLLTLLRECAGEEESIDLGGDVEDVAFDALGYDSLALLNTVGRIERDYGVQ 58 (95)
T ss_dssp CHHHHHHHHHHHHTCSSTTCSCSCCSSSCHHHHTCCSHHHHHHHHHHHHHTCCC
T ss_pred cHHHHHHHHHHHHccccccccccCCCCCChhhhCCCHHHHHHHHHHHHHHHCCc
Confidence 567888999998887631 279999999999999999999999999999984
No 33
>1fh1_A NODF, nodulation protein F; ROOT nodulation factor, protein backbone fold, lipid binding protein; NMR {Rhizobium leguminosarum} SCOP: i.11.1.1
Probab=99.13 E-value=7.9e-12 Score=82.50 Aligned_cols=53 Identities=15% Similarity=0.251 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhcCCCC-------CCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753 60 PETVQKVCEIVRRQLALPA-------ETELTSESKFSALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 60 ~ei~ekV~eIl~~~l~l~~-------~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
+++.++|+++|++.++.+. .++++++++|.|||+|||+++||++.||++|||.
T Consensus 3 ~~i~~~i~~ii~~~~~~~~~~~~~~~~~~i~~d~~l~dlg~DSl~~vel~~~lE~~fgi~ 62 (92)
T 1fh1_A 3 DQLTLEIISAINKLVKAENGERTSVALGEITTDTELTSLGIDSLGLADVLWDLEQLYGIK 62 (92)
T ss_dssp --CHHHHHHHHHHHC----------------------------CTTTTHHHHHHHC----
T ss_pred hHHHHHHHHHHHHHHHhccccccCCCHhhCCCCCCHhhcCCChHHHHHHHHHHHHHhCCc
Confidence 4678899999999987543 1489999999999999999999999999999983
No 34
>2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier protein, holo, phosphopantetheine, transport protein; HET: PNS; NMR {Aspergillus parasiticus}
Probab=99.02 E-value=3.1e-10 Score=72.96 Aligned_cols=54 Identities=26% Similarity=0.359 Sum_probs=50.0
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753 58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
...++.+.|++++++.++++. ++++++++|.+||+|||..++++..||++||+.
T Consensus 8 ~~~~~~~~l~~~~~~~l~~~~-~~i~~~~~~~~lG~DSL~~~~l~~~l~~~~g~~ 61 (89)
T 2kr5_A 8 VSNEKLDAVMRVVSEESGIAL-EELTDDSNFADMGIDSLSSMVIGSRFREDLGLD 61 (89)
T ss_dssp CCHHHHHHHHHHHHHHHCCCG-GGCCTTCBHHHHTCCHHHHHHHHHHHHHTTCCC
T ss_pred ccHHHHHHHHHHHHHHHCcCH-HHCCCCCCHHHcCccHHHHHHHHHHHHHHHCCC
Confidence 457899999999999999985 689999999999999999999999999999973
No 35
>2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier protein FA structural genomics, PSI, protein structure initiative; NMR {Nostoc SP} PDB: 2afe_A
Probab=99.00 E-value=8.1e-10 Score=70.20 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=50.5
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 57 ~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
....++.+.|++++++.++++. ++++++.+|.+||+|||..++++..||++||+.
T Consensus 10 ~~~~~~~~~l~~~~~~~l~~~~-~~i~~~~~~~~lG~DSl~~~~l~~~l~~~~~~~ 64 (88)
T 2afd_A 10 ASVEDIQSWLIDQFAQQLDVDP-DDIDMEESFDNYDLNSSKALILLGRLEKWLGKE 64 (88)
T ss_dssp SSHHHHHHHHHHHHHHHHTSCG-GGCCTTSCGGGTTCCSTHHHHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHHHHHHHCcCH-HHcCCCCCHHHcCccHHHHHHHHHHHHHHHCCC
Confidence 3577899999999999999985 689999999999999999999999999999973
No 36
>2liu_A CURA; holo state, transferase; NMR {Lyngbya majuscula} PDB: 2liw_A*
Probab=98.99 E-value=9.6e-10 Score=71.40 Aligned_cols=55 Identities=25% Similarity=0.253 Sum_probs=50.8
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 57 ~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
....++.+.|++++++.++++. ++++++.+|.|||+|||..++++..|+++||+.
T Consensus 17 ~~~~~~~~~l~~~~~~~l~~~~-~~i~~~~~~~~lG~DSl~~~~l~~~l~~~~g~~ 71 (99)
T 2liu_A 17 VNLSEIKQVLKQQLAEALYTEE-SEIAEDQKFVDLGLDSIVGVEWTTTINQTYNLN 71 (99)
T ss_dssp CCHHHHHHHHHHHHHHHTTSCG-GGCCSSSCHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHHHCcCH-HHcCCCCCHHHhCccHHHHHHHHHHHHHHHCCC
Confidence 4678999999999999999985 689999999999999999999999999999973
No 37
>2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens}
Probab=98.87 E-value=2.7e-09 Score=78.82 Aligned_cols=55 Identities=20% Similarity=0.178 Sum_probs=50.9
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 57 ~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
..++++.+.|++++++.++++. ++|+++.+|.|||+|||+.+||+..|+++||+.
T Consensus 22 ~~~~~i~~~l~~~~a~~l~~~~-~~i~~~~~f~~lG~DSl~~~el~~~l~~~~g~~ 76 (212)
T 2l22_A 22 VADDECAQFLRQSLAAMLYCEP-GQIRDGSRFLELGLDSVIAAQWIREINKHYQLK 76 (212)
T ss_dssp CCTTHHHHHHHHHHHHHTTCCT-TSCCTTCBHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHHHHCcCH-HHcCCCCCHHHhCCcHHHHHHHHHHHHHHHCCC
Confidence 3567899999999999999986 699999999999999999999999999999973
No 38
>2ju1_A Erythronolide synthase; carrier protein domain, modular polyketide synthase, alpha- helical bundle, acyltransferase; NMR {Saccharopolyspora erythraea} PDB: 2ju2_A
Probab=98.84 E-value=2.8e-09 Score=69.12 Aligned_cols=53 Identities=28% Similarity=0.271 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHHhcC-CCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753 59 KPETVQKVCEIVRRQLA-LPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 59 ~~ei~ekV~eIl~~~l~-l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
...+.+.|++++++.++ .+. ++|+++.+|.+||+|||..+|++..|+++||+.
T Consensus 18 ~~~~~~~l~~~~~~~l~~~~~-~~i~~~~~f~~lG~DSL~a~~l~~~l~~~~g~~ 71 (95)
T 2ju1_A 18 TAELVRLVRTSTATVLGHDDP-KAVRATTPFKELGFDSLAAVRLRNLLNAATGLR 71 (95)
T ss_dssp HHHHHHHHHHHHHHHTTCCCG-GGCCSSSCHHHHTCSSHHHHHHHHHHGGGTSSC
T ss_pred HHHHHHHHHHHHHHHHCCCCh-hhCCCCCCHHHcCCcHHHHHHHHHHHHHHHCCC
Confidence 45788899999999999 554 689999999999999999999999999999973
No 39
>1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A
Probab=98.71 E-value=3e-08 Score=65.10 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=47.4
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753 58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
...++.++|++++++.++++ .|+++.+|.+||.|||..++++..|+++||+.
T Consensus 11 p~~~~e~~l~~i~~~vL~~~---~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~ 62 (91)
T 1dny_A 11 PTNAVESKLAEIWERVLGVS---GIGILDNFFQIGGHSLKAMAVAAQVHREYQVE 62 (91)
T ss_dssp CSSHHHHHHHHHHHHHHTCS---SCCSSCCTTSSCCSSHHHHHHHHHHHHHCCCC
T ss_pred CCCHHHHHHHHHHHHHhCCC---CCCCCCCHHHcCCCHHHHHHHHHHHHHHHCCC
Confidence 45678999999999999984 78999999999999999999999999999973
No 40
>4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus}
Probab=98.70 E-value=3.7e-08 Score=64.57 Aligned_cols=51 Identities=16% Similarity=0.265 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753 59 KPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 59 ~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
..++.++|++++++.++++ +|.++.+|.+||.|||..++++..|+++||+.
T Consensus 14 ~~~~e~~l~~i~~~vL~~~---~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~ 64 (93)
T 4i4d_A 14 RRALERDIAAIWAETLGRD---SVGPHEDFAALGGNSIHAIXITNRVEELVDAE 64 (93)
T ss_dssp HHHHHHHHHHHHHHHHTCS---CCCTTCCTTTTTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHHHHhCCC---CCCCCCCHHHcCCcHHHHHHHHHHHHHHhCCC
Confidence 4688999999999999983 79999999999999999999999999999973
No 41
>2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens}
Probab=98.63 E-value=6.7e-08 Score=71.30 Aligned_cols=54 Identities=19% Similarity=0.194 Sum_probs=49.4
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753 58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
.+.++.+.|++++++.++++. ++|+++.+|.+||+|||+.+||+..|+++||+.
T Consensus 127 ~~~~i~~~l~~~~~~~l~~~~-~~i~~~~~f~~lG~DSl~a~el~~~l~~~~g~~ 180 (212)
T 2l22_A 127 QRESIQDYLKQSLGELLFLDP-GQLRSGAQFLDLGMDSVTGTQWMRGVSRHFSIQ 180 (212)
T ss_dssp HHHHHHHHHHHHHHHHHSSCS-SSCCSSCCGGGGCSSSHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHHHCCCh-hhCCCCCCHHHhCCCHHHHHHHHHHHHHHHCCC
Confidence 356888999999999999976 699999999999999999999999999999973
No 42
>3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A
Probab=98.08 E-value=5.2e-06 Score=63.67 Aligned_cols=52 Identities=19% Similarity=0.178 Sum_probs=46.3
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753 58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
...++.++|+++++++|+++ .|..+.+|.+||.|||..++++..|+++||+.
T Consensus 8 p~~~~e~~l~~~~~~~l~~~---~i~~~~~ff~lGgdSl~a~~l~~~l~~~~~~~ 59 (329)
T 3tej_A 8 PKAGSETIIAAAFSSLLGCD---VQDADADFFALGGHXLLAMKLAAQLSRQVARQ 59 (329)
T ss_dssp CCTTHHHHHHHHHHHHHTC----CCSTTCBTTTTTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCHHHHHHHHHHHHHhCCC---CCCCCCCHHHcCCcHHHHHHHHHHHHHHHCCC
Confidence 45678899999999999985 48899999999999999999999999999973
No 43
>2cq8_A 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH, PP-binding, acyl carrier protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=2e-05 Score=54.65 Aligned_cols=50 Identities=26% Similarity=0.299 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHHhcC-CCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcC-C
Q 033753 59 KPETVQKVCEIVRRQLA-LPAETELTSESKFSALGADSLDTVHLTLLLSIWLN-L 111 (112)
Q Consensus 59 ~~ei~ekV~eIl~~~l~-l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFg-I 111 (112)
+.++.++|++|-.++|+ . ..|.++++|.+||-|||..+.++..|+++|| +
T Consensus 23 ~~~~E~~La~iW~~vL~~~---~~i~~~ddFF~lGG~SLla~rLv~~ir~~~g~v 74 (110)
T 2cq8_A 23 ELVTAEAVRSVWQRILPKV---LEVEDSTDFFKSGAASVDVVRLVEEVKELCDGL 74 (110)
T ss_dssp HHHHHHHHHHHHHHHCSSC---SCCCTTCBHHHHHCCTTHHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHhCCC---CCCCCCCCHHhcCChHHHHHHHHHHHHHHcCCC
Confidence 46788999999999998 4 3799999999999999999999999999998 6
No 44
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=97.59 E-value=0.00011 Score=59.06 Aligned_cols=51 Identities=16% Similarity=0.259 Sum_probs=46.6
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCC
Q 033753 58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNL 111 (112)
Q Consensus 58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI 111 (112)
...++.++|+++.+++|+++ .|..+.+|.+||.|||..+.++..++++||+
T Consensus 7 p~~~~e~~l~~iw~~vL~~~---~i~~~d~ff~lGgdSl~a~~l~~~~~~~~g~ 57 (520)
T 2jgp_A 7 PRSVWEARLAQVWEQVLNVP---QVGALDDFFALGGHSLRAMRVLSSMHNEYQV 57 (520)
T ss_dssp CCSHHHHHHHHHHHHHHTCS---CCCTTCBTTTTTCCHHHHHHHHHHHHHHHCB
T ss_pred CCCHHHHHHHHHHHHHhCCC---CCCCCccHHHhcccHHHHHHHHHHHHHHhCC
Confidence 45678899999999999984 6889999999999999999999999999987
No 45
>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli}
Probab=97.29 E-value=0.00024 Score=54.73 Aligned_cols=46 Identities=15% Similarity=0.096 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCC
Q 033753 63 VQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNL 111 (112)
Q Consensus 63 ~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI 111 (112)
.+.+++.+++.+ +++ +.++++.+|.+||+||+..|.++..++++ |+
T Consensus 217 ~dwlr~~va~~L-~~~-~~i~~~~nL~~lGlDSi~~m~l~~~~~~~-g~ 262 (287)
T 2fq1_A 217 KAALREVILPLL-DES-DEPFDDDNLIDYGLDSVRMMALAARWRKV-HG 262 (287)
T ss_dssp HHHHHHHHGGGC-CCS-SCCCTTSCSGGGTCCTTHHHHHHHHHTTT-CT
T ss_pred HHHHHHHHHHHh-CCH-hhcCCCCCHHHhCccHHHHHHHHHHHHHc-CC
Confidence 356788888888 765 68999999999999999999999999987 76
No 46
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=96.78 E-value=0.00092 Score=60.28 Aligned_cols=53 Identities=17% Similarity=0.229 Sum_probs=47.2
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 57 ~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~ 112 (112)
+...++.++++++.++.|+++ .|..+.+|.+||.|||..++|+..|+++||+.
T Consensus 968 ~p~~~~e~~l~~~~~~vL~~~---~i~~~~~ff~lGg~Sl~a~~l~~~l~~~~g~~ 1020 (1304)
T 2vsq_A 968 GPRNEMEETIAQIWSEVLGRK---QIGIHDDFFALGGHALKAMTAASRIKKELGID 1020 (1304)
T ss_dssp CCSSHHHHHHHHHHHHHHTCS---CCCTTCCTTTTTCCHHHHHHHHHHSSSTTSCC
T ss_pred CCCChHHHHHHHHHHHHcCCC---ccCCCCCHHHhCCChHHHHHHHHHHHHHhCCC
Confidence 345678899999999999973 68899999999999999999999999999873
No 47
>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}
Probab=96.43 E-value=0.00049 Score=55.80 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCC
Q 033753 58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNL 111 (112)
Q Consensus 58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI 111 (112)
...++.+.|+++.++.|+++ +|..+.+|.+||.|||..+.|+..|++ ||+
T Consensus 42 p~~~~e~~l~~~w~~~l~~~---~i~~~~~ff~lGg~Sl~a~~l~~~~~~-~~~ 91 (508)
T 4f6l_B 42 PSNEIEQTFVDVFGEVLKQN---DVGVDDDFFELGGNSLEAMLVVSHLKR-FGH 91 (508)
T ss_dssp ------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHhCCC---CCCCCCChHHcCchHHHHHHHHHHHHH-cCC
Confidence 45678899999999999974 688999999999999999999999986 875
No 48
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=96.19 E-value=0.0008 Score=65.25 Aligned_cols=49 Identities=22% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCC
Q 033753 63 VQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNL 111 (112)
Q Consensus 63 ~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI 111 (112)
.+.+.+++++.|+++..++|.++.+|.|||.|||..+||...|+++||+
T Consensus 2125 ~~~l~~~~a~vL~~~~~~~i~~~~~~~~lG~DSL~avelr~~i~~~~~~ 2173 (2512)
T 2vz8_A 2125 QKDLVKAVAHILGIRDVASINPDSTLVDLGLDSLMGVEVRQILEREHDL 2173 (2512)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHHHHHhCCCcccccCCCCchHHhCcchHHHHHHHHHHHHHhCC
Confidence 4568889999999874468999999999999999999999999999986
No 49
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=95.78 E-value=0.0016 Score=54.53 Aligned_cols=51 Identities=16% Similarity=0.098 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHH-HcCC
Q 033753 58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSI-WLNL 111 (112)
Q Consensus 58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEe-eFgI 111 (112)
...++.+.++++.++.|+++ .+..+.+|.+||-|||..+.|+..|++ .||+
T Consensus 521 ~~~~~e~~l~~iw~~vL~~~---~~~~~d~Ff~lGGdSl~a~~l~~~l~~~~~~~ 572 (620)
T 4dg8_A 521 ALDPDQRGCAQLWSELLGCE---VGAADQDFFLCGGNSLLALQLVALCQSAGAGA 572 (620)
T ss_dssp -------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHhCCC---CCCCCCChhhccCcHHHHHHHHHHHHhhCCCC
Confidence 34567778899999999874 577889999999999999999999998 7876
No 50
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=95.74 E-value=0.0082 Score=49.63 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcC
Q 033753 61 ETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLN 110 (112)
Q Consensus 61 ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFg 110 (112)
+..+.+++++.+.++.. ..+..+.+|.+||.|||..+.|+..|++ ++
T Consensus 545 ~~~~~l~~~~~~~l~~~--~~~~~~d~Ff~lGgdSl~a~~l~~~l~~-~~ 591 (617)
T 3rg2_A 545 ASKAALREVILPLLDES--DEPFDDDNLIDYGLDSVRMMALAARWRK-VH 591 (617)
T ss_dssp CSHHHHHHHHGGGSCTT--CCCCTTSCGGGGTCCHHHHHHHHHHHHT-TS
T ss_pred ccHHHHHHHHHHHhccC--CCCCCCCChhhcCccHHHHHHHHHHHHH-hc
Confidence 35567888888888743 4788899999999999999999999987 44
No 51
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=90.03 E-value=0.22 Score=28.60 Aligned_cols=20 Identities=10% Similarity=-0.032 Sum_probs=16.8
Q ss_pred CchhhHHHHHHHHHHHcCCC
Q 033753 93 ADSLDTVHLTLLLSIWLNLI 112 (112)
Q Consensus 93 ~DSLD~vEIv~~LEeeFgI~ 112 (112)
+.=+...|++-.|||+|||+
T Consensus 13 lTvlE~~eLvk~leekfGVs 32 (40)
T 1dd4_C 13 LTVSELAELVKKLEDKFGVT 32 (40)
T ss_dssp SCHHHHHHHHHHHHHHTCCC
T ss_pred CcHHHHHHHHHHHHHHHCCC
Confidence 44477889999999999985
No 52
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=83.54 E-value=0.79 Score=24.69 Aligned_cols=18 Identities=11% Similarity=-0.058 Sum_probs=14.8
Q ss_pred CchhhHHHHHHHHHHHcC
Q 033753 93 ADSLDTVHLTLLLSIWLN 110 (112)
Q Consensus 93 ~DSLD~vEIv~~LEeeFg 110 (112)
+.=+...|++-++||+||
T Consensus 13 lTvlEl~eLvk~lEe~fG 30 (30)
T 1zav_U 13 LTVSELAELVKKLEDKFG 30 (30)
T ss_dssp SBHHHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHHHhC
Confidence 334678899999999998
No 53
>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*
Probab=66.82 E-value=1.2 Score=44.82 Aligned_cols=50 Identities=12% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCcccc-CCchhhHHHHHHHHHHHcCC
Q 033753 61 ETVQKVCEIVRRQLALPAETELTSESKFSAL-GADSLDTVHLTLLLSIWLNL 111 (112)
Q Consensus 61 ei~ekV~eIl~~~l~l~~~~~It~es~f~DL-G~DSLD~vEIv~~LEeeFgI 111 (112)
...+.++.+|+..+.... ++|.++..+.+| |-+|+-..||++.|+.|||+
T Consensus 1794 ~a~~~~~~liA~~~k~~~-~~i~~~~~i~~L~gg~St~~nell~dl~~efg~ 1844 (3089)
T 3zen_D 1794 DAADATVALIALSAKMRI-DQIEALDSIESITDGASSRRNQLLVDLGSELNL 1844 (3089)
T ss_dssp ----------------------------------------------------
T ss_pred CHHHHHHHHHHHHhCCCh-hHCCccccHHHHhCCchHHHHHHHHHHHHHhCC
Confidence 356678888888888876 799999999988 99999999999999999996
No 54
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=39.74 E-value=8.8 Score=22.61 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHhcCCCCC--------CCCCCCCCccccCCchhhHHHHHHHH
Q 033753 59 KPETVQKVCEIVRRQLALPAE--------TELTSESKFSALGADSLDTVHLTLLL 105 (112)
Q Consensus 59 ~~ei~ekV~eIl~~~l~l~~~--------~~It~es~f~DLG~DSLD~vEIv~~L 105 (112)
...++..+++.|.+..++++. ..+.++..+.|+|+..-+++.++..+
T Consensus 19 ~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rl 73 (76)
T 3b1l_X 19 SDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRP 73 (76)
Confidence 356777888888777776642 23556667778888777777666544
No 55
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=32.12 E-value=9.6 Score=25.50 Aligned_cols=47 Identities=21% Similarity=0.382 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhcCCCCC--------CCCCCCCCccccCCchhhHHHHHHHH
Q 033753 59 KPETVQKVCEIVRRQLALPAE--------TELTSESKFSALGADSLDTVHLTLLL 105 (112)
Q Consensus 59 ~~ei~ekV~eIl~~~l~l~~~--------~~It~es~f~DLG~DSLD~vEIv~~L 105 (112)
..+++..+++.|.+..+++++ ..+.++..|.|+|+..=+++.++..+
T Consensus 19 ~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl 73 (128)
T 3u5e_m 19 SSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (128)
T ss_dssp -------------------------------------------------------
T ss_pred CCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEc
Confidence 456778888888877776542 34566677889998888888777654
No 56
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=32.12 E-value=37 Score=21.94 Aligned_cols=53 Identities=11% Similarity=0.236 Sum_probs=41.3
Q ss_pred CChHHHHHHHHHHHHHh-cCCCC-CCCCCCCCCcc-ccCCchhhHHHHHHHHHHHc
Q 033753 57 SAKPETVQKVCEIVRRQ-LALPA-ETELTSESKFS-ALGADSLDTVHLTLLLSIWL 109 (112)
Q Consensus 57 ~~~~ei~ekV~eIl~~~-l~l~~-~~~It~es~f~-DLG~DSLD~vEIv~~LEeeF 109 (112)
.++++++.++.+-|++. |.-+. ...|..|.+|. =+|.|.+.+.||...|...|
T Consensus 27 ~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~Lk~lfg~~~v~~~~~~klL~~Hl 82 (93)
T 1uhr_A 27 QTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSEIPQRLHALL 82 (93)
T ss_dssp EEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHTCCSSEEGGGSHHHHHHHE
T ss_pred cCHHHHHHHHHHHHHhccCCCccccceeechHHHHHHhCCCcccHHHHHHHHHHhc
Confidence 57899999999999975 32221 24688999997 56999999999988887665
No 57
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=29.76 E-value=41 Score=18.66 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.0
Q ss_pred CChHHHHHHHHHHHHHhcCCCC
Q 033753 57 SAKPETVQKVCEIVRRQLALPA 78 (112)
Q Consensus 57 ~~~~ei~ekV~eIl~~~l~l~~ 78 (112)
+.+.++.+.|.+.+.+.+++++
T Consensus 14 e~k~~l~~~i~~~l~~~lg~p~ 35 (62)
T 1otf_A 14 EQKETLIRQVSEAMANSLDAPL 35 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHHHHHHHHHHhCcCc
Confidence 4677899999999999999986
No 58
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=29.63 E-value=42 Score=18.61 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=19.0
Q ss_pred CChHHHHHHHHHHHHHhcCCCC
Q 033753 57 SAKPETVQKVCEIVRRQLALPA 78 (112)
Q Consensus 57 ~~~~ei~ekV~eIl~~~l~l~~ 78 (112)
..|.++.+.|.+.+.+.+++++
T Consensus 14 eqk~~l~~~i~~~l~~~lg~~~ 35 (61)
T 2opa_A 14 EQKRNLVEKVTEAVKETTGASE 35 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCG
T ss_pred HHHHHHHHHHHHHHHHHhCcCc
Confidence 4677899999999999999975
No 59
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=29.00 E-value=12 Score=26.38 Aligned_cols=48 Identities=21% Similarity=0.373 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhcCCCCC--------CCCCCCCCccccCCchhhHHHHHHHHH
Q 033753 59 KPETVQKVCEIVRRQLALPAE--------TELTSESKFSALGADSLDTVHLTLLLS 106 (112)
Q Consensus 59 ~~ei~ekV~eIl~~~l~l~~~--------~~It~es~f~DLG~DSLD~vEIv~~LE 106 (112)
..+++..|++.|.+..+++++ ..+.++..|.|+|+..=+++.++..+.
T Consensus 19 ~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~ 74 (152)
T 3u5c_f 19 SSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (152)
T ss_dssp --------------------------------------------------------
T ss_pred CCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeecc
Confidence 456778888888877776542 356666778899988888888776553
No 60
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=28.98 E-value=57 Score=18.64 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=19.1
Q ss_pred CChHHHHHHHHHHHHHhcCCCC
Q 033753 57 SAKPETVQKVCEIVRRQLALPA 78 (112)
Q Consensus 57 ~~~~ei~ekV~eIl~~~l~l~~ 78 (112)
..|.++.+.|.+.+.+.+++++
T Consensus 13 eqK~~L~~~it~~~~~~lg~~~ 34 (62)
T 3m20_A 13 GKKREFVERLTSVAAEIYGMDR 34 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHHHHHHhCcCc
Confidence 3577899999999999999986
No 61
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=28.80 E-value=32 Score=22.85 Aligned_cols=54 Identities=9% Similarity=0.256 Sum_probs=42.9
Q ss_pred CCChHHHHHHHHHHHHHh-cCCCC-CCCCCCCCCcc-ccCCchhhHHHHHHHHHHHc
Q 033753 56 CSAKPETVQKVCEIVRRQ-LALPA-ETELTSESKFS-ALGADSLDTVHLTLLLSIWL 109 (112)
Q Consensus 56 ~~~~~ei~ekV~eIl~~~-l~l~~-~~~It~es~f~-DLG~DSLD~vEIv~~LEeeF 109 (112)
-.++++++.+|.+.|++. |.-+. ...|-.|.+|. =+|-|.+.+.||-..|...|
T Consensus 34 ~~sR~eVvk~lW~YIK~nnLQdp~~Kr~I~cD~kLk~lFg~~~v~~~~m~klL~~Hl 90 (101)
T 1v32_A 34 MISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKHY 90 (101)
T ss_dssp CCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHTCCSEEETTHHHHHHHHHS
T ss_pred ccCHHHHHHHHHHHHHhhcCcCcccCCeeeccHHHHHHHCCCcccHHHHHHHHHHHc
Confidence 468999999999999975 32221 24688899997 56999999999999888766
No 62
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=27.75 E-value=44 Score=18.70 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=18.9
Q ss_pred CChHHHHHHHHHHHHHhcCCCC
Q 033753 57 SAKPETVQKVCEIVRRQLALPA 78 (112)
Q Consensus 57 ~~~~ei~ekV~eIl~~~l~l~~ 78 (112)
..+.++.+.|.+.+.+.+++++
T Consensus 15 eqk~~l~~~lt~~l~~~lg~~~ 36 (64)
T 3abf_A 15 EKKRELVRRLTEMASRLLGEPY 36 (64)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHHHHHHhCCCc
Confidence 3577899999999999999876
No 63
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=26.57 E-value=65 Score=19.83 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=18.7
Q ss_pred ccccCCChHHHHHHHHHHHHHhcCCCC
Q 033753 52 FCVSCSAKPETVQKVCEIVRRQLALPA 78 (112)
Q Consensus 52 ~~v~~~~~~ei~ekV~eIl~~~l~l~~ 78 (112)
++|.+. ...++..+.+.|.+.++++.
T Consensus 16 ~Ri~v~-~~~t~~~L~~~I~~~~~i~~ 41 (80)
T 2pjh_A 16 KRITAT-KRETAATFLKKVAKEFGFQN 41 (80)
T ss_dssp EECCCC-SSCCHHHHHHHHHHHTCCCT
T ss_pred EEEEcC-CcChHHHHHHHHHHHcCCCC
Confidence 456554 34688888888888888753
No 64
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=24.90 E-value=56 Score=18.88 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=19.0
Q ss_pred CChHHHHHHHHHHHHHhcCCCC
Q 033753 57 SAKPETVQKVCEIVRRQLALPA 78 (112)
Q Consensus 57 ~~~~ei~ekV~eIl~~~l~l~~ 78 (112)
+.+.++.+.|.+.+.+.+++++
T Consensus 17 eqK~~l~~~lt~~l~~~lg~p~ 38 (67)
T 3m21_A 17 EQKQQLIEGVSDLMVKVLNKNK 38 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCG
T ss_pred HHHHHHHHHHHHHHHHHHCcCc
Confidence 3577899999999999999976
No 65
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=23.06 E-value=64 Score=18.43 Aligned_cols=22 Identities=9% Similarity=0.123 Sum_probs=19.0
Q ss_pred CChHHHHHHHHHHHHHhcCCCC
Q 033753 57 SAKPETVQKVCEIVRRQLALPA 78 (112)
Q Consensus 57 ~~~~ei~ekV~eIl~~~l~l~~ 78 (112)
+.+.++.+.|.+.+.+.+++++
T Consensus 14 eqk~~L~~~it~~~~~~lg~p~ 35 (65)
T 3ry0_A 14 QEVAALGEALTAAAHETLGTPV 35 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCG
T ss_pred HHHHHHHHHHHHHHHHHhCcCc
Confidence 4577899999999999999986
No 66
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=22.96 E-value=67 Score=17.55 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=18.7
Q ss_pred CChHHHHHHHHHHHHHhcCCCC
Q 033753 57 SAKPETVQKVCEIVRRQLALPA 78 (112)
Q Consensus 57 ~~~~ei~ekV~eIl~~~l~l~~ 78 (112)
..+.++.+.|.+.+.+.+++++
T Consensus 17 e~k~~l~~~l~~~l~~~lg~p~ 38 (63)
T 2x4k_A 17 EQLKNLVSEVTDAVEKTTGANR 38 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCG
T ss_pred HHHHHHHHHHHHHHHHHhCcCc
Confidence 3567899999999999999876
No 67
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=21.79 E-value=83 Score=20.11 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=18.8
Q ss_pred cccCCChHHHHHHHHHHHHHhcCCCC
Q 033753 53 CVSCSAKPETVQKVCEIVRRQLALPA 78 (112)
Q Consensus 53 ~v~~~~~~ei~ekV~eIl~~~l~l~~ 78 (112)
+|.+.....++..+++.|.+.+++++
T Consensus 20 ~v~v~~~~~Tv~~LK~kI~~~~gip~ 45 (107)
T 1wf9_A 20 RVSVDGPHITVSQLKTLIQDQLQIPI 45 (107)
T ss_dssp EEEECCTTSBHHHHHHHHHHHSCCCT
T ss_pred EEEECCCCCcHHHHHHHHHHHhCcCc
Confidence 44444356788899999998888764
No 68
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=21.49 E-value=47 Score=19.57 Aligned_cols=45 Identities=11% Similarity=0.274 Sum_probs=29.4
Q ss_pred ccccCCChHHHHHHHHHHHHHhcCCCCC--------CCCCCCCCccccCCchhh
Q 033753 52 FCVSCSAKPETVQKVCEIVRRQLALPAE--------TELTSESKFSALGADSLD 97 (112)
Q Consensus 52 ~~v~~~~~~ei~ekV~eIl~~~l~l~~~--------~~It~es~f~DLG~DSLD 97 (112)
+.+.+. ..+++..+++.|.+..++++. ..+.++..|.++|+..=+
T Consensus 16 ~~~~v~-~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~ 68 (85)
T 3n3k_B 16 IILEVE-PSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHS 68 (85)
T ss_dssp EEEECC-TTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTC
T ss_pred EEEEEC-CCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCC
Confidence 334333 356888888888888888752 245666677788775543
No 69
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.30 E-value=64 Score=18.72 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhcCCCCC--------CCCCCCCCccccCCch
Q 033753 60 PETVQKVCEIVRRQLALPAE--------TELTSESKFSALGADS 95 (112)
Q Consensus 60 ~ei~ekV~eIl~~~l~l~~~--------~~It~es~f~DLG~DS 95 (112)
..++..+++.|.+..++++. ..+.++..|.++|+..
T Consensus 27 ~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~ 70 (81)
T 2dzi_A 27 DELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGP 70 (81)
T ss_dssp SCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCS
T ss_pred CCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCC
Confidence 46788888888888888752 1345566677777643
No 70
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=20.73 E-value=64 Score=18.94 Aligned_cols=22 Identities=14% Similarity=0.255 Sum_probs=19.0
Q ss_pred CChHHHHHHHHHHHHHhcCCCC
Q 033753 57 SAKPETVQKVCEIVRRQLALPA 78 (112)
Q Consensus 57 ~~~~ei~ekV~eIl~~~l~l~~ 78 (112)
..|.++.+.|.+.+.+.+++++
T Consensus 15 eqK~~L~~~it~~l~~~lg~p~ 36 (72)
T 3mb2_A 15 EQKAELARALSAAAAAAFDVPL 36 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHHHHHHHHHHhCCCc
Confidence 4577899999999999999986
No 71
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=20.07 E-value=54 Score=18.63 Aligned_cols=36 Identities=14% Similarity=0.336 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhcCCCCC--------CCCCCCCCccccCCch
Q 033753 60 PETVQKVCEIVRRQLALPAE--------TELTSESKFSALGADS 95 (112)
Q Consensus 60 ~ei~ekV~eIl~~~l~l~~~--------~~It~es~f~DLG~DS 95 (112)
..++..+++.|.+..++++. ..+.++..|.++|+..
T Consensus 20 ~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~ 63 (76)
T 3a9j_A 20 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQR 63 (76)
T ss_dssp TCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCT
T ss_pred CCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCC
Confidence 46788888888888887642 2355666677777643
No 72
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=20.03 E-value=38 Score=21.81 Aligned_cols=53 Identities=15% Similarity=0.339 Sum_probs=41.1
Q ss_pred CChHHHHHHHHHHHHHh-cCCCC-CCCCCCCCCcc-ccCCchhhHHHHHHHHHHHc
Q 033753 57 SAKPETVQKVCEIVRRQ-LALPA-ETELTSESKFS-ALGADSLDTVHLTLLLSIWL 109 (112)
Q Consensus 57 ~~~~ei~ekV~eIl~~~-l~l~~-~~~It~es~f~-DLG~DSLD~vEIv~~LEeeF 109 (112)
.++++++.++.+-|++. |.-+. ...|..|.+|. =+|.|++.+.||-..|...|
T Consensus 27 ~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~L~~lfg~~~v~~~~~~klL~~Hl 82 (93)
T 1v31_A 27 ETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHL 82 (93)
T ss_dssp ECSHHHHHHHHHHHHHTTCBCSSCSSEEECCSHHHHHSCSSEEETTTTHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHHccCcCcccCceeehhHHHHHHhCCCcccHHHHHHHHHHhc
Confidence 48899999999999975 32221 13588888887 56999999999988887765
Done!