BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033754
(112 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q28KF4|RS21_JANSC 30S ribosomal protein S21 OS=Jannaschia sp. (strain CCS1) GN=rpsU
PE=3 SV=1
Length = 68
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 3/63 (4%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDL 97
++V V + N++QAL +++K+Q G+ R +K +Q H+ K SEKR AR+ E R++ L
Sbjct: 1 MQVSVRDNNVDQALRALKKKLQREGVFREMKLKQ-HYEKPSEKR--AREKAEAIRRARKL 57
Query: 98 ARK 100
ARK
Sbjct: 58 ARK 60
>sp|B8EIA0|RS21_METSB 30S ribosomal protein S21 OS=Methylocella silvestris (strain BL2 /
DSM 15510 / NCIMB 13906) GN=rpsU PE=3 SV=1
Length = 79
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDL 97
++V V + N++QAL +++KMQ GI R +K + H+ K SEKR AR+ E R++ L
Sbjct: 1 MQVLVRDNNVDQALKALKKKMQREGIFREMKL-RGHYEKPSEKR--AREKAEAIRRARKL 57
Query: 98 ARK 100
ARK
Sbjct: 58 ARK 60
>sp|A8LLI5|RS21_DINSH 30S ribosomal protein S21 OS=Dinoroseobacter shibae (strain DFL 12)
GN=rpsU PE=3 SV=1
Length = 68
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 42/63 (66%), Gaps = 3/63 (4%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDL 97
++V V + N++QAL +++K+Q G+ R +K +Q H+ K SEK+ AR+ E R++ L
Sbjct: 1 MQVSVRDNNVDQALRALKKKLQREGVFREMKLKQ-HYEKPSEKK--AREKAEAIRRARKL 57
Query: 98 ARK 100
ARK
Sbjct: 58 ARK 60
>sp|Q13B80|RS21_RHOPS 30S ribosomal protein S21 OS=Rhodopseudomonas palustris (strain
BisB5) GN=rpsU PE=3 SV=1
Length = 100
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDL 97
++V V + N++QAL +++KMQ GI R +K + H+ K SEK+ AR+ E R++ L
Sbjct: 1 MQVLVRDNNVDQALKALKKKMQREGIFREMKL-RGHYEKPSEKK--AREKAEAVRRARKL 57
Query: 98 ARK 100
ARK
Sbjct: 58 ARK 60
>sp|Q11B64|RS212_MESSB 30S ribosomal protein S21 2 OS=Mesorhizobium sp. (strain BNC1)
GN=rpsU2 PE=3 SV=1
Length = 75
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDL 97
++V V + N++QAL +++KMQ GI R +K +R + K SE+R AR+ E R++ L
Sbjct: 1 MQVVVRDNNVDQALRVLKKKMQREGIFREMK-ARRSYEKPSERR--AREKAEAVRRARKL 57
Query: 98 ARK 100
ARK
Sbjct: 58 ARK 60
>sp|Q07J67|RS21_RHOP5 30S ribosomal protein S21 OS=Rhodopseudomonas palustris (strain
BisA53) GN=rpsU PE=3 SV=1
Length = 99
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDL 97
++V V + N++QAL +++KMQ GI R +K + H+ K SEK+ AR+ E R++ L
Sbjct: 1 MQVLVRDNNVDQALKALKKKMQREGIFREMKL-RGHYEKPSEKK--AREKAEAVRRARKL 57
Query: 98 ARK 100
ARK
Sbjct: 58 ARK 60
>sp|Q2J055|RS21_RHOP2 30S ribosomal protein S21 OS=Rhodopseudomonas palustris (strain
HaA2) GN=rpsU PE=3 SV=1
Length = 101
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDL 97
++V V + N++QAL +++KMQ GI R +K + H+ K SEK+ AR+ E R++ L
Sbjct: 1 MQVLVRDNNVDQALKALKKKMQREGIFREMKL-RGHYEKPSEKK--AREKAEAVRRARKL 57
Query: 98 ARK 100
ARK
Sbjct: 58 ARK 60
>sp|Q6N274|RS21_RHOPA 30S ribosomal protein S21 OS=Rhodopseudomonas palustris (strain
ATCC BAA-98 / CGA009) GN=rpsU PE=1 SV=1
Length = 87
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDL 97
++V V + N++QAL +++KMQ GI R +K + H+ K SEK+ AR+ E R++ L
Sbjct: 1 MQVLVRDNNVDQALKALKKKMQREGIFREMKL-RGHYEKPSEKK--AREKAEAVRRARKL 57
Query: 98 ARK 100
ARK
Sbjct: 58 ARK 60
>sp|Q3STY0|RS21_NITWN 30S ribosomal protein S21 OS=Nitrobacter winogradskyi (strain
Nb-255 / ATCC 25391) GN=rpsU PE=3 SV=1
Length = 95
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDL 97
++V V + N++QAL +++KMQ GI R +K + H+ K SEK+ AR+ E R++ L
Sbjct: 1 MQVLVRDNNVDQALKALKKKMQREGIFREMKL-RGHYEKPSEKK--AREKAEAVRRARKL 57
Query: 98 ARK 100
ARK
Sbjct: 58 ARK 60
>sp|Q1QNY6|RS21_NITHX 30S ribosomal protein S21 OS=Nitrobacter hamburgensis (strain X14 /
DSM 10229) GN=rpsU PE=3 SV=1
Length = 95
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDL 97
++V V + N++QAL +++KMQ GI R +K + H+ K SEK+ AR+ E R++ L
Sbjct: 1 MQVLVRDNNVDQALKALKKKMQREGIFREMKL-RGHYEKPSEKK--AREKAEAVRRARKL 57
Query: 98 ARK 100
ARK
Sbjct: 58 ARK 60
>sp|Q20ZE8|RS21_RHOPB 30S ribosomal protein S21 OS=Rhodopseudomonas palustris (strain
BisB18) GN=rpsU PE=3 SV=2
Length = 100
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDL 97
++V V + N++QAL +++KMQ GI R +K + H+ K SEK+ AR+ E R++ L
Sbjct: 1 MQVLVRDNNVDQALKALKKKMQREGIFREMKL-RGHYEKPSEKK--AREKAEAVRRARKL 57
Query: 98 ARK 100
ARK
Sbjct: 58 ARK 60
>sp|Q89EG8|RS212_BRAJA 30S ribosomal protein S21 2 OS=Bradyrhizobium japonicum (strain
USDA 110) GN=rpsU2 PE=3 SV=1
Length = 98
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDL 97
++V V + N++QAL +++KMQ GI R +K + H+ K SEK+ AR+ E R++ L
Sbjct: 1 MQVLVRDNNVDQALKALKKKMQREGIFREMKL-RGHYEKPSEKK--AREKAEAVRRARKL 57
Query: 98 ARK 100
ARK
Sbjct: 58 ARK 60
>sp|B6JC20|RS21_OLICO 30S ribosomal protein S21 OS=Oligotropha carboxidovorans (strain
ATCC 49405 / DSM 1227 / OM5) GN=rpsU PE=3 SV=1
Length = 96
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDL 97
++V V + N++QAL +++KMQ GI R +K + H+ K SEK+ AR+ E R++ L
Sbjct: 1 MQVLVRDNNVDQALKALKKKMQREGIFREMKL-RGHYEKPSEKK--AREKAEAVRRARKL 57
Query: 98 ARK 100
ARK
Sbjct: 58 ARK 60
>sp|Q1GDL5|RS21_RUEST 30S ribosomal protein S21 OS=Ruegeria sp. (strain TM1040) GN=rpsU
PE=3 SV=1
Length = 68
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDL 97
++V V + N++QAL +++K+Q G+ R +K +Q H K SEK+ AR+ E R++ L
Sbjct: 1 MQVSVRDNNVDQALRALKKKLQREGVFREMKLKQ-HFEKPSEKK--AREKAEAIRRARKL 57
Query: 98 ARK 100
ARK
Sbjct: 58 ARK 60
>sp|Q5LX29|RS21_RUEPO 30S ribosomal protein S21 OS=Ruegeria pomeroyi (strain ATCC 700808
/ DSM 15171 / DSS-3) GN=rpsU PE=3 SV=1
Length = 68
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDL 97
++V V + N++QAL +++K+Q G+ R +K +Q H K SEK+ AR+ E R++ L
Sbjct: 1 MQVSVRDNNVDQALRALKKKLQREGVFREMKLKQ-HFEKPSEKK--AREKAEAIRRARKL 57
Query: 98 ARK 100
ARK
Sbjct: 58 ARK 60
>sp|B2IDB5|RS21_BEII9 30S ribosomal protein S21 OS=Beijerinckia indica subsp. indica
(strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rpsU PE=3
SV=1
Length = 79
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDL 97
++V V + N++QAL +++KMQ GI R +K + ++ K SEKR AR+ E R++ L
Sbjct: 1 MQVLVRDNNVDQALKALKKKMQREGIFREMKL-RGYYEKPSEKR--AREKAEAVRRARKL 57
Query: 98 ARK 100
ARK
Sbjct: 58 ARK 60
>sp|B9KLR1|RS21_RHOSK 30S ribosomal protein S21 OS=Rhodobacter sphaeroides (strain KD131
/ KCTC 12085) GN=rpsU PE=3 SV=1
Length = 68
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDL 97
++V V + N+EQAL +++K+Q G+ R +K +Q H K S KR AR+ E R++ L
Sbjct: 1 MQVSVRDNNVEQALRALKKKLQREGVFREMKLKQ-HFEKPSVKR--AREQAEAVRRARKL 57
Query: 98 ARK 100
ARK
Sbjct: 58 ARK 60
>sp|A4WVB1|RS21_RHOS5 30S ribosomal protein S21 OS=Rhodobacter sphaeroides (strain ATCC
17025 / ATH 2.4.3) GN=rpsU PE=3 SV=1
Length = 68
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDL 97
++V V + N+EQAL +++K+Q G+ R +K +Q H K S KR AR+ E R++ L
Sbjct: 1 MQVSVRDNNVEQALRALKKKLQREGVFREMKLKQ-HFEKPSVKR--AREQAEAVRRARKL 57
Query: 98 ARK 100
ARK
Sbjct: 58 ARK 60
>sp|Q3IZZ0|RS21_RHOS4 30S ribosomal protein S21 OS=Rhodobacter sphaeroides (strain ATCC
17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rpsU PE=3 SV=1
Length = 68
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDL 97
++V V + N+EQAL +++K+Q G+ R +K +Q H K S KR AR+ E R++ L
Sbjct: 1 MQVSVRDNNVEQALRALKKKLQREGVFREMKLKQ-HFEKPSVKR--AREQAEAVRRARKL 57
Query: 98 ARK 100
ARK
Sbjct: 58 ARK 60
>sp|A3PMA9|RS21_RHOS1 30S ribosomal protein S21 OS=Rhodobacter sphaeroides (strain ATCC
17029 / ATH 2.4.9) GN=rpsU PE=3 SV=1
Length = 68
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDL 97
++V V + N+EQAL +++K+Q G+ R +K +Q H K S KR AR+ E R++ L
Sbjct: 1 MQVSVRDNNVEQALRALKKKLQREGVFREMKLKQ-HFEKPSVKR--AREQAEAVRRARKL 57
Query: 98 ARK 100
ARK
Sbjct: 58 ARK 60
>sp|Q6G512|RS21_BARHE 30S ribosomal protein S21 OS=Bartonella henselae (strain ATCC 49882
/ Houston 1) GN=rpsU PE=3 SV=1
Length = 77
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDL 97
++V V + N++QAL +++KMQ GI R +K ++ K SEKR AR+ E R++ L
Sbjct: 1 MQVLVRDNNVDQALRALKKKMQREGIFREMKMRG-YYEKPSEKR--AREKAEAVRRTRKL 57
Query: 98 ARK 100
ARK
Sbjct: 58 ARK 60
>sp|A1URM1|RS21_BARBK 30S ribosomal protein S21 OS=Bartonella bacilliformis (strain ATCC
35685 / KC583) GN=rpsU PE=3 SV=1
Length = 77
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDL 97
++V V + N++QAL +++KMQ GI R +K ++ K SEKR AR+ E R++ L
Sbjct: 1 MQVLVRDNNVDQALRALKKKMQREGIFREMKMRG-YYEKPSEKR--AREKAEAIRRTRKL 57
Query: 98 ARK 100
ARK
Sbjct: 58 ARK 60
>sp|Q6G0U2|RS21_BARQU 30S ribosomal protein S21 OS=Bartonella quintana (strain Toulouse)
GN=rpsU PE=3 SV=1
Length = 77
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDL 97
++V V + N++QAL +++KMQ GI R +K ++ K SEKR AR+ E R++ L
Sbjct: 1 MQVLVRDNNVDQALRALKKKMQREGIFREMKMRG-YYEKPSEKR--AREKAEAIRRTRKL 57
Query: 98 ARK 100
ARK
Sbjct: 58 ARK 60
>sp|Q0ALJ5|RS21_MARMM 30S ribosomal protein S21 OS=Maricaulis maris (strain MCS10)
GN=rpsU PE=3 SV=1
Length = 92
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRV 82
+++ V + N+EQAL +++KMQ G R +KR + H+ K SEK+
Sbjct: 16 VQIVVRDNNVEQALRALKKKMQREGTFREMKR-RNHYEKPSEKKA 59
>sp|Q9Z3S4|RS21A_RHIME 30S ribosomal protein S21 A OS=Rhizobium meliloti (strain 1021)
GN=rpsU1 PE=3 SV=1
Length = 78
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDL 97
++V V + N++QAL +++KMQ G+ R +K + K SEKRV R+ E R++ L
Sbjct: 1 MQVLVRDNNIDQALRVLKKKMQREGVFREMKMRSAYE-KPSEKRV--REKAEAVRRTRKL 57
Query: 98 ARK 100
ARK
Sbjct: 58 ARK 60
>sp|Q5FUM8|RS21_GLUOX 30S ribosomal protein S21 OS=Gluconobacter oxydans (strain 621H)
GN=rpsU PE=3 SV=1
Length = 67
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDL 97
++V V + N++QAL +++KMQ G+ R +K +RH K SEKR AR+ E R++ +
Sbjct: 1 MQVLVRDNNVDQALKALKKKMQREGVFREMKL-RRHFEKPSEKR--AREAAEAVRRARKM 57
Query: 98 ARK 100
RK
Sbjct: 58 ERK 60
>sp|A9IM39|RS21_BART1 30S ribosomal protein S21 OS=Bartonella tribocorum (strain CIP
105476 / IBS 506) GN=rpsU PE=3 SV=1
Length = 77
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDL 97
++V V + N++QAL +++KMQ GI R +K ++ K SE+R AR+ E R++ L
Sbjct: 1 MQVLVRDNNVDQALRALKKKMQREGIFREMKMRS-YYEKPSERR--AREKAEAIRRTRKL 57
Query: 98 ARK 100
ARK
Sbjct: 58 ARK 60
>sp|A1B4B5|RS21_PARDP 30S ribosomal protein S21 OS=Paracoccus denitrificans (strain Pd
1222) GN=rpsU PE=3 SV=1
Length = 68
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDL 97
++V V + N+EQAL +++K+Q G+ R +K +Q H K S K+ AR+ E R++ L
Sbjct: 1 MQVSVRDNNVEQALRALKKKLQREGVFREMKLKQ-HFEKPSVKK--AREKAEAVRRARKL 57
Query: 98 ARK 100
ARK
Sbjct: 58 ARK 60
>sp|Q2ND78|RS21_ERYLH 30S ribosomal protein S21 OS=Erythrobacter litoralis (strain
HTCC2594) GN=rpsU PE=3 SV=1
Length = 68
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRV 82
+++ V + N++QAL +++K+Q G+ R +K +RH+ K SEKR
Sbjct: 1 MQIMVRDNNVDQALRALKKKLQREGVYREMK-LRRHYEKPSEKRA 44
>sp|A9HS49|RS21_GLUDA 30S ribosomal protein S21 OS=Gluconacetobacter diazotrophicus
(strain ATCC 49037 / DSM 5601 / PAl5) GN=rpsU PE=3 SV=1
Length = 67
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDL 97
++V V + N++QAL +++KMQ GI R +K +RH+ K SE++ AR+ E R++ +
Sbjct: 1 MQVLVRDNNVDQALKALKKKMQREGIFREMKL-RRHYEKPSERK--AREAAEAVRRARKM 57
Query: 98 ARK 100
RK
Sbjct: 58 ERK 60
>sp|Q2RVK1|RS21_RHORT 30S ribosomal protein S21 OS=Rhodospirillum rubrum (strain ATCC
11170 / NCIB 8255) GN=rpsU PE=3 SV=1
Length = 80
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 31 QVQQWRG-IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLE 89
QV+ R ++V V + N++QAL +++KMQ G+ R +K +R+ K SEKR AR+ E
Sbjct: 6 QVEGERALVQVLVRDNNVDQALKALKKKMQREGVFREMKL-RRNFEKPSEKR--AREKAE 62
Query: 90 RKIRSQDLARK 100
R++ L RK
Sbjct: 63 AVRRARKLERK 73
>sp|Q9A3A7|RS21_CAUCR 30S ribosomal protein S21 OS=Caulobacter crescentus (strain ATCC
19089 / CB15) GN=rpsU PE=3 SV=1
Length = 87
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRV 82
+++ V + N++QAL +++KMQ G R +KR H+ K SEKR
Sbjct: 12 VQIFVRDNNVDQALKALKKKMQREGSFREMKR-HVHYEKPSEKRA 55
>sp|Q98GY4|RS21_RHILO 30S ribosomal protein S21 OS=Rhizobium loti (strain MAFF303099)
GN=rpsU PE=3 SV=1
Length = 88
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRV 82
++V V + N++QAL +++KMQ GI R +K + H+ K SEKR
Sbjct: 1 MQVLVRDNNVDQALRALKKKMQREGIFREMKM-RGHYEKPSEKRA 44
>sp|Q0BUX3|RS21_GRABC 30S ribosomal protein S21 OS=Granulibacter bethesdensis (strain
ATCC BAA-1260 / CGDNIH1) GN=rpsU PE=3 SV=2
Length = 67
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDL 97
++V V + N++QAL +++KMQ GI R +K +RH K SE++ AR+ E R++ L
Sbjct: 1 MQVLVRDNNVDQALKALKKKMQREGIFREMKL-RRHFEKPSERK--AREAAEAVRRARKL 57
Query: 98 ARK 100
RK
Sbjct: 58 ERK 60
>sp|Q89XE9|RS211_BRAJA 30S ribosomal protein S21 1 OS=Bradyrhizobium japonicum (strain
USDA 110) GN=rpsU1 PE=3 SV=2
Length = 92
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDL 97
++V V + N++QAL +++KMQ G+ R +K ++R + K SE++ R+ E R++ L
Sbjct: 1 MQVLVRDNNVDQALRVLKKKMQREGVFREMK-QRRSYEKPSERKT--REKSEAIRRARKL 57
Query: 98 ARK 100
ARK
Sbjct: 58 ARK 60
>sp|Q11EJ9|RS211_MESSB 30S ribosomal protein S21 1 OS=Mesorhizobium sp. (strain BNC1)
GN=rpsU1 PE=3 SV=1
Length = 76
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRV 82
++V V + N++QAL +++KMQ GI R +K + H+ K SEKR
Sbjct: 1 MQVLVRDNNVDQALRALKKKMQREGIFREMKM-RGHYEKPSEKRA 44
>sp|Q0BXF6|RS21_HYPNA 30S ribosomal protein S21 OS=Hyphomonas neptunium (strain ATCC
15444) GN=rpsU PE=3 SV=1
Length = 69
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKR 81
+++ V + N+EQAL +++KMQ G+ R +K Q H K SEK+
Sbjct: 2 VQIVVRDNNVEQALRALKKKMQREGLFREMKARQ-HFEKPSEKK 44
>sp|A6WYQ4|RS21_OCHA4 30S ribosomal protein S21 OS=Ochrobactrum anthropi (strain ATCC
49188 / DSM 6882 / NCTC 12168) GN=rpsU PE=3 SV=1
Length = 75
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRV 82
++V V + N++QAL +++KMQ GI R +K + H+ K SEKR
Sbjct: 1 MQVLVRDNNVDQALRALKKKMQREGIFREMKM-RGHYEKPSEKRA 44
>sp|Q8U8M6|RS21A_AGRT5 30S ribosomal protein S21 A OS=Agrobacterium tumefaciens (strain
C58 / ATCC 33970) GN=rpsU1 PE=3 SV=1
Length = 75
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDL 97
++V V + N++QAL +++KMQ GI R +K ++ K S+KR AR+ E R + L
Sbjct: 1 MQVLVRDNNVDQALRALKKKMQREGIFREMKMRD-YYEKPSQKR--AREKAEAVRRVRKL 57
Query: 98 ARK 100
ARK
Sbjct: 58 ARK 60
>sp|P66515|RS21_BRUSU 30S ribosomal protein S21 OS=Brucella suis biovar 1 (strain 1330)
GN=rpsU PE=3 SV=1
Length = 75
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRV 82
++V V + N++QAL +++KMQ GI R +K + H+ K SEKR
Sbjct: 1 MQVLVRDNNVDQALRALKKKMQREGIFREMKM-RGHYEKPSEKRA 44
>sp|A9WVX6|RS21_BRUSI 30S ribosomal protein S21 OS=Brucella suis (strain ATCC 23445 /
NCTC 10510) GN=rpsU PE=3 SV=1
Length = 75
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRV 82
++V V + N++QAL +++KMQ GI R +K + H+ K SEKR
Sbjct: 1 MQVLVRDNNVDQALRALKKKMQREGIFREMKM-RGHYEKPSEKRA 44
>sp|A5VVM8|RS21_BRUO2 30S ribosomal protein S21 OS=Brucella ovis (strain ATCC 25840 /
63/290 / NCTC 10512) GN=rpsU PE=3 SV=1
Length = 75
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRV 82
++V V + N++QAL +++KMQ GI R +K + H+ K SEKR
Sbjct: 1 MQVLVRDNNVDQALRALKKKMQREGIFREMKM-RGHYEKPSEKRA 44
>sp|P66514|RS21_BRUME 30S ribosomal protein S21 OS=Brucella melitensis biotype 1
(strain 16M / ATCC 23456 / NCTC 10094) GN=rpsU PE=3
SV=1
Length = 75
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRV 82
++V V + N++QAL +++KMQ GI R +K + H+ K SEKR
Sbjct: 1 MQVLVRDNNVDQALRALKKKMQREGIFREMKM-RGHYEKPSEKRA 44
>sp|C0RMB1|RS21_BRUMB 30S ribosomal protein S21 OS=Brucella melitensis biotype 2
(strain ATCC 23457) GN=rpsU PE=3 SV=1
Length = 75
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRV 82
++V V + N++QAL +++KMQ GI R +K + H+ K SEKR
Sbjct: 1 MQVLVRDNNVDQALRALKKKMQREGIFREMKM-RGHYEKPSEKRA 44
>sp|A9MCP6|RS21_BRUC2 30S ribosomal protein S21 OS=Brucella canis (strain ATCC 23365 /
NCTC 10854) GN=rpsU PE=3 SV=1
Length = 75
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRV 82
++V V + N++QAL +++KMQ GI R +K + H+ K SEKR
Sbjct: 1 MQVLVRDNNVDQALRALKKKMQREGIFREMKM-RGHYEKPSEKRA 44
>sp|Q579I3|RS21_BRUAB 30S ribosomal protein S21 OS=Brucella abortus biovar 1 (strain
9-941) GN=rpsU PE=3 SV=1
Length = 75
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRV 82
++V V + N++QAL +++KMQ GI R +K + H+ K SEKR
Sbjct: 1 MQVLVRDNNVDQALRALKKKMQREGIFREMKM-RGHYEKPSEKRA 44
>sp|Q2YIW0|RS21_BRUA2 30S ribosomal protein S21 OS=Brucella abortus (strain 2308)
GN=rpsU PE=3 SV=1
Length = 75
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRV 82
++V V + N++QAL +++KMQ GI R +K + H+ K SEKR
Sbjct: 1 MQVLVRDNNVDQALRALKKKMQREGIFREMKM-RGHYEKPSEKRA 44
>sp|B2SD64|RS21_BRUA1 30S ribosomal protein S21 OS=Brucella abortus (strain S19)
GN=rpsU PE=3 SV=1
Length = 75
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRV 82
++V V + N++QAL +++KMQ GI R +K + H+ K SEKR
Sbjct: 1 MQVLVRDNNVDQALRALKKKMQREGIFREMKM-RGHYEKPSEKRA 44
>sp|Q1MBR4|RS212_RHIL3 30S ribosomal protein S21 2 OS=Rhizobium leguminosarum bv. viciae
(strain 3841) GN=rpsU2 PE=3 SV=2
Length = 71
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDL 97
++V V + N++QAL +++KMQ GI R +K ++ K S+KR AR+ E R + L
Sbjct: 1 MQVLVRDNNVDQALRALKKKMQREGIFREMKMRD-YYEKPSQKR--AREKAEAVRRVRKL 57
Query: 98 ARK 100
ARK
Sbjct: 58 ARK 60
>sp|Q2K474|RS212_RHIEC 30S ribosomal protein S21 2 OS=Rhizobium etli (strain CFN 42 / ATCC
51251) GN=rpsU2 PE=3 SV=1
Length = 70
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDL 97
++V V + N++QAL +++KMQ GI R +K ++ K S+KR AR+ E R + L
Sbjct: 1 MQVLVRDNNVDQALRALKKKMQREGIFREMKMRD-YYEKPSQKR--AREKAEAVRRVRKL 57
Query: 98 ARK 100
ARK
Sbjct: 58 ARK 60
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.132 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,479,160
Number of Sequences: 539616
Number of extensions: 1209458
Number of successful extensions: 4646
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 107
Number of HSP's that attempted gapping in prelim test: 4617
Number of HSP's gapped (non-prelim): 128
length of query: 112
length of database: 191,569,459
effective HSP length: 80
effective length of query: 32
effective length of database: 148,400,179
effective search space: 4748805728
effective search space used: 4748805728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)