Query 033754
Match_columns 112
No_of_seqs 106 out of 460
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 09:34:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033754.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033754hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8n_U 30S ribosomal protein S 99.8 1.4E-20 4.7E-25 119.0 -2.9 49 40-89 1-50 (51)
2 3i1m_U 30S ribosomal protein S 99.7 5.5E-21 1.9E-25 127.8 -6.5 56 38-94 2-58 (71)
3 3bbn_U Ribosomal protein S21; 99.7 3.4E-19 1.2E-23 137.7 -6.5 57 37-94 96-153 (190)
4 1xb2_B EF-TS, elongation facto 40.6 26 0.00088 27.9 3.7 26 44-69 30-55 (291)
5 4dh9_Y YAEJ; ribosome, YAEJ, r 34.8 23 0.00079 25.4 2.4 43 36-82 68-115 (140)
6 2cp9_A EF-TS, EF-TSMT, elongat 30.4 36 0.0012 21.5 2.6 19 44-62 35-53 (64)
7 2vh1_A FTSQ, cell division pro 24.9 1.1E+02 0.0039 21.6 4.7 31 31-61 144-174 (220)
8 2rsm_A Probable peptide chain 24.3 1E+02 0.0036 21.6 4.2 24 36-59 77-105 (115)
9 1rdu_A Conserved hypothetical 24.2 54 0.0018 21.2 2.6 30 27-56 73-103 (116)
10 2re2_A Uncharacterized protein 24.1 43 0.0015 22.9 2.2 26 30-56 93-119 (136)
11 1j3m_A The conserved hypotheti 23.7 81 0.0028 20.9 3.5 25 38-63 4-28 (129)
12 3mah_A Aspartokinase; aspartat 23.7 41 0.0014 23.1 2.0 25 37-61 128-152 (157)
13 1fxk_C Protein (prefoldin); ar 23.2 72 0.0025 21.4 3.2 31 30-60 64-99 (133)
14 2jvf_A De novo protein M7; tet 23.1 71 0.0024 21.5 3.1 25 38-62 21-46 (96)
15 1pch_A Phosphocarrier protein; 22.7 95 0.0033 20.0 3.6 32 32-63 54-85 (88)
16 1oai_A Nuclear RNA export fact 22.0 33 0.0011 21.1 1.1 22 43-64 31-53 (59)
17 2dt9_A Aspartokinase; protein- 21.4 30 0.001 24.0 1.0 25 37-61 135-159 (167)
No 1
>3r8n_U 30S ribosomal protein S21; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_U 3fih_U* 3j18_U* 2wwl_U 3oar_U 3oaq_U 3ofb_U 3ofa_U 3ofp_U 3ofx_U 3ofy_U 3ofo_U 3r8o_U 4a2i_U 4gd1_U 4gd2_U
Probab=99.75 E-value=1.4e-20 Score=118.95 Aligned_cols=49 Identities=20% Similarity=0.291 Sum_probs=46.2
Q ss_pred EEecCC-CHHHHHHHHHHhHhhhhhHHHHHhhhcccCCchHHHHHHHHHHH
Q 033754 40 VKVFNG-NLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLE 89 (112)
Q Consensus 40 V~V~~g-~IE~ALRrfKRk~~keGIl~eiK~R~~~YeKPSekRrrk~~ea~ 89 (112)
|.|+|| |||+||++|||+|+++||++|+|+| +||||||++|+++..+|.
T Consensus 1 v~V~enE~ie~AlrrfkR~~~k~Gi~~e~r~r-~~yeKPs~krkrk~~~a~ 50 (51)
T 3r8n_U 1 IKVRENEPFDVALRRFKRSCEKAGVLAEVRRR-EFYEKPTTERKRAKASAV 50 (51)
T ss_dssp CEECCCSSCCCCCCTTGGGSSTTHHHHHHHSC-CCCSSHHHHHHHHHHHTT
T ss_pred CcCCCCCCHHHHHHHHHHHHHHcchHHHHHHH-HhhcCHHHHHHHHHHHhc
Confidence 578888 9999999999999999999999999 999999999999988764
No 2
>3i1m_U 30S ribosomal protein S21; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_U* 2avy_U 2aw7_U 2vho_U 2vhp_U 3df1_U* 3df3_U* 3e1a_Q 3e1c_Q 1vs5_U 3i1o_U 3i1q_U 3i1s_U 3i1z_U 3i21_U 3izv_Y* 3izw_Y* 3kc4_U 3or9_U 3ora_U ...
Probab=99.74 E-value=5.5e-21 Score=127.84 Aligned_cols=56 Identities=18% Similarity=0.244 Sum_probs=49.0
Q ss_pred eEEEecCC-CHHHHHHHHHHhHhhhhhHHHHHhhhcccCCchHHHHHHHHHHHHHHHh
Q 033754 38 IRVKVFNG-NLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRS 94 (112)
Q Consensus 38 i~V~V~~g-~IE~ALRrfKRk~~keGIl~eiK~R~~~YeKPSekRrrk~~ea~rR~rk 94 (112)
++|.|+|| |||+||++||++|+++||++|+|+| +||||||++|+++..+|+++.++
T Consensus 2 ~~V~V~enE~ie~ALRrfKR~~~k~Gil~e~Rrr-~~yEKPs~kRkrk~~~a~kR~~k 58 (71)
T 3i1m_U 2 PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRR-EFYEKPTTERKRAKASAVKRHAK 58 (71)
T ss_dssp --CEEECCSSCCSCCCTTTTSSSTHHHHTTSSSC-CCSSSHHHHHHHHHHTSCC----
T ss_pred CeeEeCCCCCHHHHHHHHHHHHHHccHHHHHHHH-HhccCHHHHHHHHHHHHHHHHHH
Confidence 46889998 9999999999999999999999999 99999999999999999998876
No 3
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.67 E-value=3.4e-19 Score=137.67 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=50.4
Q ss_pred ceEEEecCC-CHHHHHHHHHHhHhhhhhHHHHHhhhcccCCchHHHHHHHHHHHHHHHh
Q 033754 37 GIRVKVFNG-NLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRS 94 (112)
Q Consensus 37 gi~V~V~~g-~IE~ALRrfKRk~~keGIl~eiK~R~~~YeKPSekRrrk~~ea~rR~rk 94 (112)
.++|.|+|| +||+|||+|||+|+++||++|+|+| +||||||++|+++..+|++|.++
T Consensus 96 M~~V~VkeNE~iE~ALRRFKRkveKeGIlrElRrR-r~YEKPSeKRKRK~~eA~rR~rK 153 (190)
T 3bbn_U 96 NVQVVVDDNEPEERLLNRFRREVMRAGVIQECKRR-RFFENTQDVRKRKTREAAKRNRR 153 (190)
T ss_dssp -CCCCCCCCSSCCCCCCSSSTTTTTTHHHHSSSSC-CCTTTTTTHHHHHHHHTTC----
T ss_pred ccEEEecCCCCHHHHHHHHHHHHHHccHHHHHHHH-HhccCHHHHHHHHHHHHHHHHHH
Confidence 578899987 9999999999999999999999999 99999999999999999999888
No 4
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=40.56 E-value=26 Score=27.89 Aligned_cols=26 Identities=31% Similarity=0.639 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHhHhhhhhHHHHHh
Q 033754 44 NGNLEQALSWMQRKMQSSGIERLIKR 69 (112)
Q Consensus 44 ~g~IE~ALRrfKRk~~keGIl~eiK~ 69 (112)
|||+|+|+..|+.+.++.|+-+--|+
T Consensus 30 ~GD~ekAie~LR~~a~kkG~akAaKk 55 (291)
T 1xb2_B 30 GGDLKQAESWLHKQAQKEGWSKAARL 55 (291)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHh
Confidence 68999999999999999998877665
No 5
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=34.75 E-value=23 Score=25.37 Aligned_cols=43 Identities=21% Similarity=0.184 Sum_probs=32.4
Q ss_pred cceEEEecCC-----CHHHHHHHHHHhHhhhhhHHHHHhhhcccCCchHHHH
Q 033754 36 RGIRVKVFNG-----NLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRV 82 (112)
Q Consensus 36 ~gi~V~V~~g-----~IE~ALRrfKRk~~keGIl~eiK~R~~~YeKPSekRr 82 (112)
.+|+|...+. |-+.|+.+|..++...-... + . +-..||+..-+
T Consensus 68 G~ivv~~q~~RSQ~~Nr~~A~~rL~~~l~~a~~~p--k-~-R~~tkpt~~s~ 115 (140)
T 4dh9_Y 68 GVIVIKAQEYRSQELNREAALARLVAMIKELTTEK--K-A-RRPTRPTRASK 115 (140)
T ss_dssp CCCCEEECCCSSHHHHHHHHHHHHHHHHHHHHSCC--C-C-CCCCCCSSTTT
T ss_pred CcEEEEEcCCcCHHHHHHHHHHHHHHHHHHhccCC--C-C-CcCCCCcHHHH
Confidence 3588988873 89999999999999887653 2 3 56789975433
No 6
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=30.44 E-value=36 Score=21.53 Aligned_cols=19 Identities=37% Similarity=0.805 Sum_probs=14.9
Q ss_pred CCCHHHHHHHHHHhHhhhh
Q 033754 44 NGNLEQALSWMQRKMQSSG 62 (112)
Q Consensus 44 ~g~IE~ALRrfKRk~~keG 62 (112)
|||||.|+-.|..+=...|
T Consensus 35 ~GDi~~Ai~~Lr~kg~~~a 53 (64)
T 2cp9_A 35 GGDLKQAEIWLHKEAQKEG 53 (64)
T ss_dssp TSCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhHHHH
Confidence 6799999999987655444
No 7
>2vh1_A FTSQ, cell division protein FTSQ; potra, membrane, septation, cell cycle, transmembrane, inner membrane; 2.7A {Escherichia coli}
Probab=24.86 E-value=1.1e+02 Score=21.60 Aligned_cols=31 Identities=13% Similarity=0.117 Sum_probs=25.1
Q ss_pred ccccccceEEEecCCCHHHHHHHHHHhHhhh
Q 033754 31 QVQQWRGIRVKVFNGNLEQALSWMQRKMQSS 61 (112)
Q Consensus 31 ~v~q~~gi~V~V~~g~IE~ALRrfKRk~~ke 61 (112)
++.-..|++|.+.+++++..|.+|...+..-
T Consensus 144 ~l~l~~g~~V~lG~~~~~~kl~rl~~~~~~l 174 (220)
T 2vh1_A 144 QLTLNNDIKLNLGRGDTMKRLARFVELYPVL 174 (220)
T ss_dssp EEECSSSCEEEEESSCHHHHHHHHHHHHHHH
T ss_pred EEEECCCCEEEECCcCHHHHHHHHHHHHHHH
Confidence 4555689999999999999999998876543
No 8
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus}
Probab=24.25 E-value=1e+02 Score=21.63 Aligned_cols=24 Identities=33% Similarity=0.344 Sum_probs=20.1
Q ss_pred cceEEEecCC-----CHHHHHHHHHHhHh
Q 033754 36 RGIRVKVFNG-----NLEQALSWMQRKMQ 59 (112)
Q Consensus 36 ~gi~V~V~~g-----~IE~ALRrfKRk~~ 59 (112)
.||+|.+.+. |-+.|+++|+-+|.
T Consensus 77 TGivV~~q~~RSQ~~Nr~~A~~~L~~kL~ 105 (115)
T 2rsm_A 77 SGIVVKCHQTRSVDQNRKIARKVLQEKVD 105 (115)
T ss_dssp TCCEEEECCSSCHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 4789998875 78999999998875
No 9
>1rdu_A Conserved hypothetical protein; atnos, candid, structural genomics, joint center for structu genomics, JCSG, protein structure initiative; NMR {Thermotoga maritima} SCOP: c.55.5.1
Probab=24.24 E-value=54 Score=21.20 Aligned_cols=30 Identities=13% Similarity=0.224 Sum_probs=22.0
Q ss_pred ccccccccccceEEEe-cCCCHHHHHHHHHH
Q 033754 27 CQRHQVQQWRGIRVKV-FNGNLEQALSWMQR 56 (112)
Q Consensus 27 ~~~~~v~q~~gi~V~V-~~g~IE~ALRrfKR 56 (112)
.+.-...+..||.|.. ..+++|.||..|..
T Consensus 73 ~~a~~~L~~~GI~v~~~~~~~i~eal~~~~~ 103 (116)
T 1rdu_A 73 RNAFETLKAAGVKVYRFEGGTVQEAIDAFSE 103 (116)
T ss_dssp SSCHHHHHTTTCEEECCCSCBHHHHHHHHHT
T ss_pred HhHHHHHHHCCCEEEECCCCCHHHHHHHHHh
Confidence 3344566778999887 44699999998853
No 10
>2re2_A Uncharacterized protein TA1041; dinitrogenase iron-molybdenum cofactor, structural genomics, center for structural genomics; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728}
Probab=24.09 E-value=43 Score=22.89 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=21.1
Q ss_pred cccccccceEEEecCC-CHHHHHHHHHH
Q 033754 30 HQVQQWRGIRVKVFNG-NLEQALSWMQR 56 (112)
Q Consensus 30 ~~v~q~~gi~V~V~~g-~IE~ALRrfKR 56 (112)
-...+. ||.|....+ +||.|+..|..
T Consensus 93 ~~~L~~-GI~v~~~~~~~veeal~~~~~ 119 (136)
T 2re2_A 93 FNFIKN-KMDVYIVPEMPVADALKLILE 119 (136)
T ss_dssp HHHHTT-TSEEEECCSCBHHHHHHHHHT
T ss_pred HHHHHC-CCEEEEcCCCCHHHHHHHHHh
Confidence 456667 999998776 99999999864
No 11
>1j3m_A The conserved hypothetical protein TT1751; X-RAY crystallography, structural genomics, riken structural genomics/proteomics initiative; 2.00A {Thermus thermophilus} SCOP: d.129.7.1
Probab=23.75 E-value=81 Score=20.93 Aligned_cols=25 Identities=16% Similarity=0.376 Sum_probs=20.4
Q ss_pred eEEEecCCCHHHHHHHHHHhHhhhhh
Q 033754 38 IRVKVFNGNLEQALSWMQRKMQSSGI 63 (112)
Q Consensus 38 i~V~V~~g~IE~ALRrfKRk~~keGI 63 (112)
+++.. +.++|.++.+++..+...|+
T Consensus 4 ~~~~s-~~s~~e~~~~l~~al~~~Gf 28 (129)
T 1j3m_A 4 MRKTL-KATLAEARAQVEAALKEEGF 28 (129)
T ss_dssp EEEEE-SSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEc-CCCHHHHHHHHHHHHHHCCC
Confidence 34444 56999999999999999886
No 12
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=23.69 E-value=41 Score=23.09 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=20.6
Q ss_pred ceEEEecCCCHHHHHHHHHHhHhhh
Q 033754 37 GIRVKVFNGNLEQALSWMQRKMQSS 61 (112)
Q Consensus 37 gi~V~V~~g~IE~ALRrfKRk~~ke 61 (112)
.|.+.|.+.+.++|++.+...+-.+
T Consensus 128 ~is~vv~~~d~~~a~~~Lh~~f~~~ 152 (157)
T 3mah_A 128 NVSVLVKAEDKKKALIALSNKLFNS 152 (157)
T ss_dssp CEEEEEEGGGHHHHHHHHHHHHHC-
T ss_pred EEEEEEcHHHHHHHHHHHHHHHhcc
Confidence 5888898899999999998877543
No 13
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=23.20 E-value=72 Score=21.37 Aligned_cols=31 Identities=16% Similarity=0.267 Sum_probs=25.3
Q ss_pred cccccccceEEEecCC-----CHHHHHHHHHHhHhh
Q 033754 30 HQVQQWRGIRVKVFNG-----NLEQALSWMQRKMQS 60 (112)
Q Consensus 30 ~~v~q~~gi~V~V~~g-----~IE~ALRrfKRk~~k 60 (112)
+.|.....|.|.|..| ++|.|+..|+++++.
T Consensus 64 a~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~~r~~~ 99 (133)
T 1fxk_C 64 AELKDTSEVIMSVGAGVAIKKNFEDAMESIKSQKNE 99 (133)
T ss_dssp EECCSTTEEEEEEETTEEEEEEHHHHHHHHHHHHHH
T ss_pred EEECCCCEEEEEcCCCEEEEeeHHHHHHHHHHHHHH
Confidence 4566666788888876 999999999999875
No 14
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=23.14 E-value=71 Score=21.53 Aligned_cols=25 Identities=32% Similarity=0.619 Sum_probs=21.3
Q ss_pred eEEEecCC-CHHHHHHHHHHhHhhhh
Q 033754 38 IRVKVFNG-NLEQALSWMQRKMQSSG 62 (112)
Q Consensus 38 i~V~V~~g-~IE~ALRrfKRk~~keG 62 (112)
|.+.|..| .+|+||..+.+.+.++|
T Consensus 21 idirvstgkeleralqelekalarag 46 (96)
T 2jvf_A 21 IDIRVSTGKELERALQELEKALARAG 46 (96)
T ss_dssp EEEECCSSSHHHHHHHHHHHHHHHHT
T ss_pred EEEEEcccHHHHHHHHHHHHHHHhcc
Confidence 45566677 99999999999999988
No 15
>1pch_A Phosphocarrier protein; phosphotransferase; 1.80A {Mycoplasma capricolum} SCOP: d.94.1.1
Probab=22.73 E-value=95 Score=19.96 Aligned_cols=32 Identities=13% Similarity=0.271 Sum_probs=26.1
Q ss_pred cccccceEEEecCCCHHHHHHHHHHhHhhhhh
Q 033754 32 VQQWRGIRVKVFNGNLEQALSWMQRKMQSSGI 63 (112)
Q Consensus 32 v~q~~gi~V~V~~g~IE~ALRrfKRk~~keGI 63 (112)
+.++-.|+|.+...|=|.|+..|..-+...|+
T Consensus 54 ~~~G~~i~i~a~G~De~~Al~~l~~l~~~~~~ 85 (88)
T 1pch_A 54 IKTGTEITIQADGNDADQAIQAIKQTMIDTAL 85 (88)
T ss_dssp CCTTCEEEEEEESTTHHHHHHHHHHHHHHTTS
T ss_pred CCCCCEEEEEEeCCCHHHHHHHHHHHHHhCCc
Confidence 55667788888555999999999998888775
No 16
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=21.98 E-value=33 Score=21.06 Aligned_cols=22 Identities=9% Similarity=0.025 Sum_probs=16.6
Q ss_pred cCC-CHHHHHHHHHHhHhhhhhH
Q 033754 43 FNG-NLEQALSWMQRKMQSSGIE 64 (112)
Q Consensus 43 ~~g-~IE~ALRrfKRk~~keGIl 64 (112)
.+| |+|.|+..|...-.+..|.
T Consensus 31 ~~~Wd~~~A~~~F~~l~~~~~IP 53 (59)
T 1oai_A 31 DNNWDYTRSAQAFTHLKAKGEIP 53 (59)
T ss_dssp HTTTCHHHHHHHHHHHHHTTCSC
T ss_pred HcCCCHHHHHHHHHHHHHcCCCC
Confidence 356 9999999998866655554
No 17
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=21.39 E-value=30 Score=23.96 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=19.7
Q ss_pred ceEEEecCCCHHHHHHHHHHhHhhh
Q 033754 37 GIRVKVFNGNLEQALSWMQRKMQSS 61 (112)
Q Consensus 37 gi~V~V~~g~IE~ALRrfKRk~~ke 61 (112)
.|.+.|.+.+.|+|++.+...+..+
T Consensus 135 ~is~vv~~~d~~~Av~~Lh~~f~~~ 159 (167)
T 2dt9_A 135 RISVIIPAEYAEAALRAVHQAFELD 159 (167)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHTC--
T ss_pred EEEEEEeHHHHHHHHHHHHHHHcCC
Confidence 6888888889999999998776543
Done!