Query 033754
Match_columns 112
No_of_seqs 106 out of 460
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 09:34:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033754.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033754hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hmfa2 d.58.18.10 (A:404-470) 63.5 1.8 0.00013 25.6 2.0 49 10-58 10-64 (67)
2 d2hmfa3 d.58.18.10 (A:304-403) 59.0 1.2 9.1E-05 28.1 0.6 26 37-62 57-82 (100)
3 d1udxa3 d.242.1.1 (A:341-416) 56.7 2.4 0.00017 25.9 1.7 25 46-70 31-55 (76)
4 d1ptfa_ d.94.1.1 (A:) Histidin 46.3 10 0.00076 23.1 3.6 32 32-63 55-86 (87)
5 d1aipc1 a.5.2.2 (C:2-53) Elong 40.1 8.3 0.00061 22.3 2.2 22 43-68 27-48 (52)
6 d2j0wa3 d.58.18.10 (A:386-449) 39.0 11 0.0008 21.6 2.7 22 37-58 41-62 (64)
7 d1ka5a_ d.94.1.1 (A:) Histidin 38.4 18 0.0013 22.1 3.8 32 32-63 55-86 (88)
8 d2hpra_ d.94.1.1 (A:) Histidin 36.4 20 0.0015 21.8 3.8 32 32-63 54-85 (87)
9 d2daha1 a.5.2.1 (A:8-48) Ubiqu 34.5 11 0.00082 20.6 2.0 13 44-56 28-40 (41)
10 d1efub3 a.5.2.2 (B:1-54) Elong 33.8 12 0.00087 21.7 2.2 20 44-67 30-49 (54)
11 d1xb2b1 a.5.2.2 (B:56-111) Elo 29.5 20 0.0015 20.8 2.7 18 43-60 29-46 (56)
12 d1pcha_ d.94.1.1 (A:) Histidin 25.7 36 0.0026 20.7 3.6 32 32-63 54-85 (88)
13 d1rq0a_ e.38.1.1 (A:) Peptide 22.8 27 0.0019 26.2 3.0 49 12-60 203-256 (333)
14 d1opca_ a.4.6.1 (A:) OmpR {Esc 22.5 20 0.0014 21.3 1.8 21 42-62 60-80 (99)
15 d1wuwa_ g.13.1.1 (A:) Hordothi 20.3 16 0.0011 20.7 0.9 17 2-18 6-22 (45)
No 1
>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}
Probab=63.51 E-value=1.8 Score=25.58 Aligned_cols=49 Identities=12% Similarity=0.093 Sum_probs=32.2
Q ss_pred hcccCCCCccccccccccc---ccccccc---cceEEEecCCCHHHHHHHHHHhH
Q 033754 10 GYLTQPSQGLNLFSRNQCQ---RHQVQQW---RGIRVKVFNGNLEQALSWMQRKM 58 (112)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~---~~~v~q~---~gi~V~V~~g~IE~ALRrfKRk~ 58 (112)
|+-..|+-+..+|+.++.. -.-+.|+ -.|.+.|.+.+.|+|++.+.+.+
T Consensus 10 gm~~~~gi~arif~~L~~~~InV~mIsq~~Se~~Is~~V~~~d~~~Av~~Lh~~F 64 (67)
T d2hmfa2 10 GMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLHEKF 64 (67)
T ss_dssp TTTTCTTHHHHHHHHHHHTTCCCCEEEESSCSSEEEEEEEGGGHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHcCCChHHeeecCccceEEEEEeHHHHHHHHHHHHHHH
Confidence 3444555566677666543 2223433 26889999999999999987654
No 2
>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}
Probab=59.00 E-value=1.2 Score=28.11 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=22.4
Q ss_pred ceEEEecCCCHHHHHHHHHHhHhhhh
Q 033754 37 GIRVKVFNGNLEQALSWMQRKMQSSG 62 (112)
Q Consensus 37 gi~V~V~~g~IE~ALRrfKRk~~keG 62 (112)
.|.+.|.+.+.|+|++.+.+.+..+|
T Consensus 57 ~Isf~V~~~d~~~a~~~L~~~f~~~~ 82 (100)
T d2hmfa3 57 NISLVVSEEDVDKALKALKREFGDFG 82 (100)
T ss_dssp CEEEEECSTTHHHHHHHHHHHHCCC-
T ss_pred eEEEEEeHHHHHHHHHHHHHHHHhhc
Confidence 59999999999999999999886655
No 3
>d1udxa3 d.242.1.1 (A:341-416) Obg GTP-binding protein C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=56.72 E-value=2.4 Score=25.94 Aligned_cols=25 Identities=20% Similarity=0.488 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHhHhhhhhHHHHHhh
Q 033754 46 NLEQALSWMQRKMQSSGIERLIKRE 70 (112)
Q Consensus 46 ~IE~ALRrfKRk~~keGIl~eiK~R 70 (112)
+-+.|+.+|.++|++.||..+|++.
T Consensus 31 ~~~e~~~~f~~~l~~~Gv~~~L~~~ 55 (76)
T d1udxa3 31 DLMEAAGYLQEVFRRQGVEAALRAK 55 (76)
T ss_dssp CTGGGHHHHHHHHHHTTHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHCChHHHHHHc
Confidence 6678899999999999999999874
No 4
>d1ptfa_ d.94.1.1 (A:) Histidine-containing phosphocarrier protein (HPr) {Enterococcus faecalis [TaxId: 1351]}
Probab=46.31 E-value=10 Score=23.11 Aligned_cols=32 Identities=16% Similarity=0.267 Sum_probs=28.0
Q ss_pred cccccceEEEecCCCHHHHHHHHHHhHhhhhh
Q 033754 32 VQQWRGIRVKVFNGNLEQALSWMQRKMQSSGI 63 (112)
Q Consensus 32 v~q~~gi~V~V~~g~IE~ALRrfKRk~~keGI 63 (112)
+.++..|+|.+...|=+.|+..+..-++++|+
T Consensus 55 ~~~G~~i~i~~~G~de~~Al~~l~~~l~~egl 86 (87)
T d1ptfa_ 55 VGQGSDVTITVDGADEAEGMAAIVETLQKEGL 86 (87)
T ss_dssp CCTTCEEEEEEESTTHHHHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHcCC
Confidence 77888899998545999999999999999986
No 5
>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=40.13 E-value=8.3 Score=22.28 Aligned_cols=22 Identities=18% Similarity=0.222 Sum_probs=15.7
Q ss_pred cCCCHHHHHHHHHHhHhhhhhHHHHH
Q 033754 43 FNGNLEQALSWMQRKMQSSGIERLIK 68 (112)
Q Consensus 43 ~~g~IE~ALRrfKRk~~keGIl~eiK 68 (112)
-+||+|.|+..|+. .|+..--|
T Consensus 27 ~~gD~ekA~e~Lr~----~G~~kA~K 48 (52)
T d1aipc1 27 AGWDEEKAVQLLRE----RGAMKAAK 48 (52)
T ss_dssp TTTCHHHHHHHHHH----HHHHHHHH
T ss_pred cCCCHHHHHHHHHH----HhHHHHHH
Confidence 36799999999964 46655443
No 6
>d2j0wa3 d.58.18.10 (A:386-449) Aspartokinase {Escherichia coli [TaxId: 562]}
Probab=39.00 E-value=11 Score=21.60 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=18.7
Q ss_pred ceEEEecCCCHHHHHHHHHHhH
Q 033754 37 GIRVKVFNGNLEQALSWMQRKM 58 (112)
Q Consensus 37 gi~V~V~~g~IE~ALRrfKRk~ 58 (112)
.|.+.|++.+.|+|++.+...+
T Consensus 41 ~is~vV~~~d~~~Av~aLh~~F 62 (64)
T d2j0wa3 41 NLCFLVPGEDAEQVVQKLHSNL 62 (64)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHH
T ss_pred EEEEEEcHHHHHHHHHHHHHHh
Confidence 5788899999999999987654
No 7
>d1ka5a_ d.94.1.1 (A:) Histidine-containing phosphocarrier protein (HPr) {Staphylococcus aureus [TaxId: 1280]}
Probab=38.37 E-value=18 Score=22.10 Aligned_cols=32 Identities=13% Similarity=0.150 Sum_probs=28.0
Q ss_pred cccccceEEEecCCCHHHHHHHHHHhHhhhhh
Q 033754 32 VQQWRGIRVKVFNGNLEQALSWMQRKMQSSGI 63 (112)
Q Consensus 32 v~q~~gi~V~V~~g~IE~ALRrfKRk~~keGI 63 (112)
+.++-.|+|.+...|=+.|+..+..-++++|+
T Consensus 55 ~~~G~~v~i~~~G~de~~Al~~l~~~l~~egl 86 (88)
T d1ka5a_ 55 VGKDAEITIYADGSDESDAIQAISDVLSKEGL 86 (88)
T ss_dssp CCTTCEEEEEEESSSHHHHHHHHHHHHHHHTS
T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHhcCC
Confidence 77888999998555999999999999999986
No 8
>d2hpra_ d.94.1.1 (A:) Histidine-containing phosphocarrier protein (HPr) {Bacillus subtilis [TaxId: 1423]}
Probab=36.38 E-value=20 Score=21.79 Aligned_cols=32 Identities=16% Similarity=0.310 Sum_probs=27.6
Q ss_pred cccccceEEEecCCCHHHHHHHHHHhHhhhhh
Q 033754 32 VQQWRGIRVKVFNGNLEQALSWMQRKMQSSGI 63 (112)
Q Consensus 32 v~q~~gi~V~V~~g~IE~ALRrfKRk~~keGI 63 (112)
+.++..|+|.+...|=+.|+..+..-++.+|+
T Consensus 54 ~~~G~~v~i~~~G~De~~A~~~l~~~l~~~g~ 85 (87)
T d2hpra_ 54 IAKGAEITISASGADENDALNALEETMKCEGL 85 (87)
T ss_dssp CCTTCEEEEEEESTTHHHHHHHHHHHHHHHTS
T ss_pred CCCCCEEEEEEECcCHHHHHHHHHHHHHHcCC
Confidence 67888999999555999999999999998875
No 9
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.46 E-value=11 Score=20.62 Aligned_cols=13 Identities=15% Similarity=0.519 Sum_probs=11.1
Q ss_pred CCCHHHHHHHHHH
Q 033754 44 NGNLEQALSWMQR 56 (112)
Q Consensus 44 ~g~IE~ALRrfKR 56 (112)
+|||+.|+.+|.+
T Consensus 28 ~Gdv~~Aie~Ll~ 40 (41)
T d2daha1 28 GGDVDAAVEKLRQ 40 (41)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 6899999998865
No 10
>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=33.81 E-value=12 Score=21.71 Aligned_cols=20 Identities=30% Similarity=0.528 Sum_probs=14.6
Q ss_pred CCCHHHHHHHHHHhHhhhhhHHHH
Q 033754 44 NGNLEQALSWMQRKMQSSGIERLI 67 (112)
Q Consensus 44 ~g~IE~ALRrfKRk~~keGIl~ei 67 (112)
+||+|+|+..|+.+ |+..--
T Consensus 30 ~gD~ekA~e~Lr~k----G~~~A~ 49 (54)
T d1efub3 30 NGDIELAIENMRKS----GAIKAA 49 (54)
T ss_dssp TTCHHHHHHHHHHH----HHHHHH
T ss_pred CCCHHHHHHHHHHH----hHHHHH
Confidence 67999999998754 554433
No 11
>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Probab=29.53 E-value=20 Score=20.84 Aligned_cols=18 Identities=39% Similarity=0.789 Sum_probs=13.8
Q ss_pred cCCCHHHHHHHHHHhHhh
Q 033754 43 FNGNLEQALSWMQRKMQS 60 (112)
Q Consensus 43 ~~g~IE~ALRrfKRk~~k 60 (112)
-+||+|.|+..|+.+=..
T Consensus 29 ~~gD~ekA~e~LrkkG~a 46 (56)
T d1xb2b1 29 CGGDLKQAESWLHKQAQK 46 (56)
T ss_dssp TTTCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 367999999999876433
No 12
>d1pcha_ d.94.1.1 (A:) Histidine-containing phosphocarrier protein (HPr) {Mycoplasma capricolum [TaxId: 2095]}
Probab=25.69 E-value=36 Score=20.66 Aligned_cols=32 Identities=13% Similarity=0.271 Sum_probs=27.4
Q ss_pred cccccceEEEecCCCHHHHHHHHHHhHhhhhh
Q 033754 32 VQQWRGIRVKVFNGNLEQALSWMQRKMQSSGI 63 (112)
Q Consensus 32 v~q~~gi~V~V~~g~IE~ALRrfKRk~~keGI 63 (112)
+.++-.|+|.+...|=|.|+..+..-+..+|+
T Consensus 54 ~~~G~~v~i~~~G~De~~A~~~l~~~l~~~~~ 85 (88)
T d1pcha_ 54 IKTGTEITIQADGNDADQAIQAIKQTMIDTAL 85 (88)
T ss_dssp CCTTCEEEEEEESTTHHHHHHHHHHHHHHTTS
T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHcCC
Confidence 77788899998555999999999999988875
No 13
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1 {Thermotoga maritima [TaxId: 2336]}
Probab=22.79 E-value=27 Score=26.24 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=29.8
Q ss_pred ccCCCCcccccccccccccccccccceEEEecCC-----CHHHHHHHHHHhHhh
Q 033754 12 LTQPSQGLNLFSRNQCQRHQVQQWRGIRVKVFNG-----NLEQALSWMQRKMQS 60 (112)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~v~q~~gi~V~V~~g-----~IE~ALRrfKRk~~k 60 (112)
++|.|.|-|-+|-.-----..---.||+|.+.+. |-+.|++.|+-+|-.
T Consensus 203 ~RssG~GGQ~VNkt~sAVRitH~PTGi~v~~q~eRSQ~~Nk~~A~~~L~~kl~~ 256 (333)
T d1rq0a_ 203 FRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQYQNKQTALRILRARLYQ 256 (333)
T ss_dssp ECCCC----CCSSSSEEEEEEETTTCCEEEEEESSCHHHHHHHHHHHHHHHHHH
T ss_pred ecCCccccchhhhhhheeEEEEcCCccEEEcccccccHHHHHHHHHHHHHHHHH
Confidence 5566666666665432211122346899999885 789999999988764
No 14
>d1opca_ a.4.6.1 (A:) OmpR {Escherichia coli [TaxId: 562]}
Probab=22.47 E-value=20 Score=21.31 Aligned_cols=21 Identities=10% Similarity=0.314 Sum_probs=18.1
Q ss_pred ecCCCHHHHHHHHHHhHhhhh
Q 033754 42 VFNGNLEQALSWMQRKMQSSG 62 (112)
Q Consensus 42 V~~g~IE~ALRrfKRk~~keG 62 (112)
+.+++++..+.++++|+...|
T Consensus 60 ~~~~~l~~~I~rLRkkl~~~~ 80 (99)
T d1opca_ 60 AMERSIDVQISRLRRMVEEDP 80 (99)
T ss_dssp TTSSCHHHHHHHHHHHHCSCT
T ss_pred cccccHHHHHHHHHHHHhhCC
Confidence 456689999999999998876
No 15
>d1wuwa_ g.13.1.1 (A:) Hordothionin {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=20.26 E-value=16 Score=20.74 Aligned_cols=17 Identities=12% Similarity=0.159 Sum_probs=15.1
Q ss_pred chHHHhhhhcccCCCCc
Q 033754 2 NSVGRQLAGYLTQPSQG 18 (112)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (112)
++.+|--||+|+.|+.+
T Consensus 6 ~t~~rnCYN~CR~~G~~ 22 (45)
T d1wuwa_ 6 STLGRNCYNLCRVRGAQ 22 (45)
T ss_dssp SHHHHHHHHHHTTTSCH
T ss_pred chHHHHHHHHHhcCCcc
Confidence 57899999999999985
Done!