BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033755
(112 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LMK0|R35A1_ARATH 60S ribosomal protein L35a-1 OS=Arabidopsis thaliana GN=RPL35AA
PE=3 SV=1
Length = 112
Score = 215 bits (547), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 103/112 (91%), Positives = 106/112 (94%)
Query: 1 MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKA 60
MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSL+Q+EGVNT E+VSWY GKRMAYIYKA
Sbjct: 1 MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKA 60
Query: 61 KVKKNGSHYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 112
K KKNGSHYRCIWGKV RPHGNSGVVRAKF SNLPPKSMG RVRVFMYPSNI
Sbjct: 61 KTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112
>sp|Q9C912|R35A3_ARATH 60S ribosomal protein L35a-3 OS=Arabidopsis thaliana GN=RPL35AC
PE=3 SV=1
Length = 112
Score = 214 bits (546), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 103/112 (91%), Positives = 107/112 (95%)
Query: 1 MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKA 60
MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSL+QIEGVNT+E+V+WY GKRMAYIYKA
Sbjct: 1 MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKA 60
Query: 61 KVKKNGSHYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 112
K KKNGSHYRCIWGKV RPHGNSGVVRAKF SNLPPKSMG RVRVFMYPSNI
Sbjct: 61 KTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112
>sp|Q9FZH0|R35A2_ARATH 60S ribosomal protein L35a-2 OS=Arabidopsis thaliana GN=RPL35AB
PE=3 SV=1
Length = 111
Score = 208 bits (530), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 99/111 (89%), Positives = 106/111 (95%)
Query: 2 VKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKAK 61
+KGRQGERVRLYVRGT+LGYKRSKSNQYPNTSLIQIEGVNT+E+V+WY GKR+AYIYKAK
Sbjct: 1 MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKAK 60
Query: 62 VKKNGSHYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 112
KKNGSHYRCIWGKV RPHGNSGVVR+KF SNLPPKSMG RVRVFMYPSNI
Sbjct: 61 TKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111
>sp|P51422|R35A4_ARATH 60S ribosomal protein L35a-4 OS=Arabidopsis thaliana GN=RPL35AD
PE=3 SV=2
Length = 111
Score = 208 bits (529), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 98/111 (88%), Positives = 106/111 (95%)
Query: 2 VKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKAK 61
+KGRQGERVRLYVRGT+LGYKRSKSNQYPNTSL+QIEGVNT+E+V+WY GKR+AYIYKAK
Sbjct: 1 MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAK 60
Query: 62 VKKNGSHYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 112
KKNGSHYRCIWGKV RPHGNSGVVR+KF SNLPPKSMG RVRVFMYPSNI
Sbjct: 61 TKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111
>sp|P05744|RL33A_YEAST 60S ribosomal protein L33-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL33A PE=1 SV=3
Length = 107
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 76/106 (71%)
Query: 7 GERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKAKVKKNG 66
E RLYV+G L Y+RSK PN SLI+IEGV T +D +Y GKR+AY+Y+A + G
Sbjct: 2 AESHRLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQDAQFYLGKRIAYVYRASKEVRG 61
Query: 67 SHYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 112
S R +WGKV R HGNSGVVRA F++NLP K+ G VR+F+YPSNI
Sbjct: 62 SKIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 107
>sp|P41056|RL33B_YEAST 60S ribosomal protein L33-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL33B PE=1 SV=2
Length = 107
Score = 126 bits (316), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 60/106 (56%), Positives = 76/106 (71%)
Query: 7 GERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKAKVKKNG 66
E RLYV+G L Y+RSK PN SLI+IEGV T ++ +Y GKR+AY+Y+A + G
Sbjct: 2 AESHRLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQEAQFYLGKRIAYVYRASKEVRG 61
Query: 67 SHYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 112
S R +WGKV R HGNSGVVRA F++NLP K+ G VR+F+YPSNI
Sbjct: 62 SKIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 107
>sp|Q9USX4|RL33A_SCHPO 60S ribosomal protein L33-A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl33a PE=3 SV=2
Length = 108
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 74/102 (72%)
Query: 11 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKAKVKKNGSHYR 70
RLYV+ L ++RSK +P TSL++IEG ++KE+ +Y GKR+ ++YK+ GS R
Sbjct: 7 RLYVKAKHLSFQRSKHVIHPGTSLVKIEGCDSKEEAQFYLGKRICFVYKSNKPVRGSKIR 66
Query: 71 CIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 112
IWG V+RPHGNSGVVRA+F NLPPK+ G +RV +YPSN+
Sbjct: 67 VIWGTVSRPHGNSGVVRARFTHNLPPKTFGASLRVMLYPSNV 108
>sp|P49180|RL35A_CAEEL 60S ribosomal protein L35a OS=Caenorhabditis elegans GN=rpl-33 PE=1
SV=3
Length = 124
Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 73/108 (67%), Gaps = 6/108 (5%)
Query: 11 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKA--KVKKNG-- 66
RLYV+ G+KR Q +TSL+++EGV KED +Y GKR+ Y+YKA K K G
Sbjct: 17 RLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYLYKAHNKTLKTGHT 76
Query: 67 --SHYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 112
+ R IWGK+ RPHGN+G VRAKF N+PP ++G R+RV +YPSNI
Sbjct: 77 VATRTRAIWGKITRPHGNAGAVRAKFHHNIPPSALGKRIRVLLYPSNI 124
>sp|Q9USG6|RL33B_SCHPO 60S ribosomal protein L33-B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl33b PE=1 SV=1
Length = 108
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 72/102 (70%)
Query: 11 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKAKVKKNGSHYR 70
RLYV+ L ++RSK +P TS+++IEG ++KE+ +Y GKR+ Y+YK+ GS R
Sbjct: 7 RLYVKAKHLSFQRSKHVIHPGTSIVKIEGCDSKEEAQFYLGKRVCYVYKSSKAVRGSKIR 66
Query: 71 CIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 112
IWG +ARPHGNSG VRA+F NLP K+ G +RV +YPSNI
Sbjct: 67 VIWGTIARPHGNSGAVRARFVHNLPAKTFGSSLRVMLYPSNI 108
>sp|Q55BN7|RL35A_DICDI 60S ribosomal protein L35a OS=Dictyostelium discoideum GN=rpl35a
PE=3 SV=1
Length = 105
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 79/103 (76%), Gaps = 1/103 (0%)
Query: 11 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYK-AKVKKNGSHY 69
++Y +G +LGY+RS++ QYPN SLI+IEGV ++ED ++Y GK++ + K +K KN + +
Sbjct: 3 KIYSKGVVLGYRRSQATQYPNISLIKIEGVVSREDSTFYLGKKVCLVSKVSKSAKNPTGH 62
Query: 70 RCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 112
+ WGK+ + HG+SGVV+A+F NLPPK+MG VRV +YPSNI
Sbjct: 63 KISWGKICKTHGSSGVVQARFARNLPPKAMGAPVRVMLYPSNI 105
>sp|P0DJ22|RL35A_TETTS 60S ribosomal protein L35a OS=Tetrahymena thermophila (strain
SB210) GN=RPL35A PE=1 SV=1
Length = 113
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 76/101 (75%), Gaps = 1/101 (0%)
Query: 10 VRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKAKVKKNGSHY 69
RL+V+ G++RSK Q N +L++++ VNTKEDV++Y GKR+ YIYK + KKNGS+Y
Sbjct: 12 TRLWVKAAFTGFRRSKHTQNSNQALLKLQNVNTKEDVAFYQGKRVVYIYKGQ-KKNGSNY 70
Query: 70 RCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPS 110
R IWG++ + HGN+GV A+F NLPP+++G +RV +YP+
Sbjct: 71 RTIWGRIGKAHGNNGVAVARFAHNLPPQAIGSVLRVMLYPN 111
>sp|P02434|RL35A_XENLA 60S ribosomal protein L35a OS=Xenopus laevis GN=rpl35a PE=3 SV=2
Length = 110
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 75/107 (70%), Gaps = 5/107 (4%)
Query: 11 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKAK---VKKNG- 66
RL+ + T GYKR NQ +T+L++IEGV +++ +Y GKR AY+YKAK V G
Sbjct: 4 RLWCKATFAGYKRGLRNQREHTALLKIEGVYARDETEFYFGKRCAYVYKAKNNTVTPGGK 63
Query: 67 -SHYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 112
+ R IWGKV R HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct: 64 PNRTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sp|Q90YT3|RL35A_ICTPU 60S ribosomal protein L35a OS=Ictalurus punctatus GN=rpl35a PE=3
SV=1
Length = 110
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 75/107 (70%), Gaps = 5/107 (4%)
Query: 11 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKAK---VKKNG- 66
RL+ + GYKR NQ +T+L+++EGV ++ +V +Y GKR AY+YKAK V G
Sbjct: 4 RLWCKAIFAGYKRGLRNQREHTALLKVEGVYSRNEVDFYLGKRCAYVYKAKKTTVTPGGK 63
Query: 67 -SHYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 112
+ R IWGKV R HGNSG+VRAKF SNLPPK++G R+RV +YPS +
Sbjct: 64 PNKTRVIWGKVTRAHGNSGMVRAKFTSNLPPKAIGHRIRVMLYPSRV 110
>sp|P04646|RL35A_RAT 60S ribosomal protein L35a OS=Rattus norvegicus GN=Rpl35a PE=3 SV=1
Length = 110
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 74/107 (69%), Gaps = 5/107 (4%)
Query: 11 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKAK---VKKNG- 66
RL+ + GYKR NQ +T+L++IEGV +++ +Y GKR AY+YKAK V G
Sbjct: 4 RLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGK 63
Query: 67 -SHYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 112
+ R IWGKV R HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct: 64 PNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sp|O55142|RL35A_MOUSE 60S ribosomal protein L35a OS=Mus musculus GN=Rpl35a PE=2 SV=2
Length = 110
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 74/107 (69%), Gaps = 5/107 (4%)
Query: 11 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKAK---VKKNG- 66
RL+ + GYKR NQ +T+L++IEGV +++ +Y GKR AY+YKAK V G
Sbjct: 4 RLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGK 63
Query: 67 -SHYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 112
+ R IWGKV R HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct: 64 PNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sp|Q5R8K6|RL35A_PONAB 60S ribosomal protein L35a OS=Pongo abelii GN=RPL35A PE=3 SV=1
Length = 110
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 74/107 (69%), Gaps = 5/107 (4%)
Query: 11 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKAK---VKKNG- 66
RL+ + GYKR NQ +T+L++IEGV +++ +Y GKR AY+YKAK V G
Sbjct: 4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGK 63
Query: 67 -SHYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 112
+ R IWGKV R HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct: 64 PNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sp|P61272|RL35A_MACFA 60S ribosomal protein L35a OS=Macaca fascicularis GN=RPL35A PE=3
SV=1
Length = 110
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 74/107 (69%), Gaps = 5/107 (4%)
Query: 11 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKAK---VKKNG- 66
RL+ + GYKR NQ +T+L++IEGV +++ +Y GKR AY+YKAK V G
Sbjct: 4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGK 63
Query: 67 -SHYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 112
+ R IWGKV R HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct: 64 PNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sp|P18077|RL35A_HUMAN 60S ribosomal protein L35a OS=Homo sapiens GN=RPL35A PE=1 SV=2
Length = 110
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 74/107 (69%), Gaps = 5/107 (4%)
Query: 11 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKAK---VKKNG- 66
RL+ + GYKR NQ +T+L++IEGV +++ +Y GKR AY+YKAK V G
Sbjct: 4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGK 63
Query: 67 -SHYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 112
+ R IWGKV R HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct: 64 PNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sp|Q56JY1|RL35A_BOVIN 60S ribosomal protein L35a OS=Bos taurus GN=RPL35A PE=2 SV=1
Length = 110
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 55/107 (51%), Positives = 74/107 (69%), Gaps = 5/107 (4%)
Query: 11 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKAK---VKKNG- 66
RL+ + GYKR NQ +T+L++IEGV +++ +Y GKR AY+YKAK V G
Sbjct: 4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGK 63
Query: 67 -SHYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 112
+ R IWGK+ R HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct: 64 PNKTRVIWGKITRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sp|Q9V1P2|RL35A_PYRAB 50S ribosomal protein L35Ae OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=rpl35ae PE=3 SV=1
Length = 87
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 55/95 (57%), Gaps = 8/95 (8%)
Query: 12 LYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKAKVKKNGSHYRC 71
+ ++G +L Y+RSK NQ+ N +I+ VN++E+ S G+ I+K+ K
Sbjct: 1 MRIKGVVLSYRRSKENQHTNVMIIKPLNVNSREEASKLIGR--LVIWKSPSGK------L 52
Query: 72 IWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVF 106
+ GK+ R HG G VRA+F+ LP +++GD V +
Sbjct: 53 LKGKIVRVHGTKGAVRARFEKGLPGQALGDYVEII 87
>sp|O74099|RL35A_PYRHO 50S ribosomal protein L35Ae OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl35ae PE=3 SV=1
Length = 87
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 8/95 (8%)
Query: 12 LYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKAKVKKNGSHYRC 71
+ ++G +L Y+RSK NQ+ N +I+ +N++E+ S G+ + + +
Sbjct: 1 MRIKGVVLSYRRSKENQHTNVMIIKPLDINSREEASKLIGRLVVW--------KSPSGKV 52
Query: 72 IWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVF 106
+ GK+ R HG G VRA+F+ LP +++GD V +
Sbjct: 53 LKGKIVRVHGTRGAVRARFEKGLPGQALGDYVEII 87
>sp|P20299|RL35A_PYRWO 50S ribosomal protein L35Ae OS=Pyrococcus woesei GN=rpl35ae PE=3
SV=1
Length = 87
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 8/95 (8%)
Query: 12 LYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKAKVKKNGSHYRC 71
+ ++G +L Y+RSK NQ+ N +I+ VN++E+ S G+ + + +
Sbjct: 1 MSIKGVVLSYRRSKENQHNNVMIIKPLDVNSREEASKLIGRLVLW--------KSPSGKI 52
Query: 72 IWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVF 106
+ GK+ R HG G VRA+F+ LP +++GD V +
Sbjct: 53 LKGKIVRVHGTKGAVRARFEKGLPGQALGDYVEIV 87
>sp|Q8TZV6|RL35A_PYRFU 50S ribosomal protein L35Ae OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpl35ae PE=1 SV=1
Length = 87
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 8/95 (8%)
Query: 12 LYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKAKVKKNGSHYRC 71
+ ++G +L Y+RSK NQ+ N +I+ VN++E+ S G+ + + +
Sbjct: 1 MRIKGVVLSYRRSKENQHNNVMIIKPLDVNSREEASKLIGRLVLW--------KSPSGKI 52
Query: 72 IWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVF 106
+ GK+ R HG G VRA+F+ LP +++GD V +
Sbjct: 53 LKGKIVRVHGTKGAVRARFEKGLPGQALGDYVEIV 87
>sp|Q8TYY6|RL35A_METKA 50S ribosomal protein L35Ae OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=rpl35ae PE=3 SV=1
Length = 90
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 15 RGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKAKVKKNGSHYRCIWG 74
RG I+ Y+ + Q P +I+ EGV ++ + + GK + + K+ + I G
Sbjct: 6 RGVIVNYRMGRHTQDPRQCIIEFEGVESRSEAAQLIGKEVIW-------KHPETGKVIRG 58
Query: 75 KVARPHGNSGVVRAKFKSNLPPKSMGDRV 103
KV HGN+G VR +F+ LP +++G V
Sbjct: 59 KVVDTHGNNGAVRVRFERGLPGQALGTEV 87
>sp|Q9Y9G4|RL35A_AERPE 50S ribosomal protein L35Ae OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rpl35ae
PE=3 SV=2
Length = 94
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 12/93 (12%)
Query: 15 RGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKAKVKKNGSHYRCIW- 73
RG +LGY+R + QYP +L+++ +D R A +Y + + Y ++
Sbjct: 5 RGVVLGYRRGTNTQYPQHALVKL----LLDD------PRKAGLYVSGIAFYRDRYGNVYK 54
Query: 74 GKVARPHG-NSGVVRAKFKSNLPPKSMGDRVRV 105
G+V R HG GVV KF LP ++ G V V
Sbjct: 55 GRVLRLHGRRGGVVVVKFNPPLPGQATGGVVEV 87
>sp|Q81FZ0|SAT_BACCR Sulfate adenylyltransferase OS=Bacillus cereus (strain ATCC 14579 /
DSM 31) GN=sat PE=3 SV=1
Length = 378
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 8 ERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSW 48
ER +YV GTI+ KR ++NQ+P+ L IE + W
Sbjct: 136 ERPNVYVGGTIILTKRFENNQFPSYHLDPIETREAFKKRGW 176
>sp|B7HHH7|SAT_BACC4 Sulfate adenylyltransferase OS=Bacillus cereus (strain B4264)
GN=sat PE=3 SV=1
Length = 378
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 8 ERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSW 48
ER +YV GTI+ KR ++NQ+P+ L IE + W
Sbjct: 136 ERPNVYVGGTIILTKRFENNQFPSYHLDPIETREAFKKRGW 176
>sp|B7INB5|SAT_BACC2 Sulfate adenylyltransferase OS=Bacillus cereus (strain G9842)
GN=sat PE=3 SV=1
Length = 378
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Query: 8 ERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKED 45
ER +YV GTI+ KR ++NQ+P+ L IE T+E+
Sbjct: 136 ERPNVYVGGTIILTKRFENNQFPSYRLDPIE---TREE 170
>sp|Q55E72|PKS1_DICDI Probable polyketide synthase 1 OS=Dictyostelium discoideum GN=stlA
PE=1 SV=1
Length = 3147
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 5 RQGERV-RLYVRGTILGYKRSKSNQYPNTSLIQIE 38
+Q ER+ R + +++G R+ N+YPN S+ I+
Sbjct: 1842 KQSERISRSFYSRSLIGISRTSMNEYPNLSITSID 1876
>sp|P07541|VG16_BPPZA Encapsidation protein OS=Bacillus phage PZA GN=16 PE=4 SV=1
Length = 332
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 1 MVKGRQGERVRLYVRGTILGY-------KRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKR 53
+VKGR R Y+ G + G+ + KSN YPN S I + ++D S Y
Sbjct: 79 VVKGR-----RFYIDGKLAGWAIPLSVWQSEKSNAYPNVSTIVFDEFIREKDNSNYIPNE 133
Query: 54 MAYIYKA--KVKKNGSHYRCI 72
++ + V +N RCI
Sbjct: 134 VSALLNLMDTVFRNRERVRCI 154
>sp|P11014|VG16_BPPH2 Encapsidation protein OS=Bacillus phage phi29 GN=16 PE=4 SV=1
Length = 332
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 1 MVKGRQGERVRLYVRGTILGY-------KRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKR 53
+VKGR R Y+ G + G+ + KSN YPN S I + ++D S Y
Sbjct: 79 VVKGR-----RFYIDGKLAGWAIPLSVWQSEKSNAYPNVSTIVFDEFIREKDNSNYIPNE 133
Query: 54 MAYIYKA--KVKKNGSHYRCI 72
++ + V +N RCI
Sbjct: 134 VSALLNLMDTVFRNRERVRCI 154
>sp|Q5FGW4|SYE2_EHRRG Glutamate--tRNA ligase 2 OS=Ehrlichia ruminantium (strain Gardel)
GN=gltX2 PE=3 SV=1
Length = 470
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 49 YCGKRMAYIYKAKVKKNGSHYR--CIWGKVARPHGN-SGVVR 87
YC + + K + K G HY+ CIW P GN S V+R
Sbjct: 101 YCSEEEINLEKEQYTKKGLHYKHNCIWKNRKPPTGNCSKVIR 142
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,847,688
Number of Sequences: 539616
Number of extensions: 1516160
Number of successful extensions: 3038
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2994
Number of HSP's gapped (non-prelim): 32
length of query: 112
length of database: 191,569,459
effective HSP length: 80
effective length of query: 32
effective length of database: 148,400,179
effective search space: 4748805728
effective search space used: 4748805728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)