BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033756
MAASVMASSLSLKPAPFTVEKSAARGLPSLAKTSFKIVAKGGKIKTDKPYGVNGGMDLRE
GLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGNALAQ

High Scoring Gene Products

Symbol, full name Information P value
PSBR
photosystem II subunit R
protein from Arabidopsis thaliana 4.9e-37

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033756
        (112 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2207320 - symbol:PSBR "photosystem II subunit ...   398  4.9e-37   1


>TAIR|locus:2207320 [details] [associations]
            symbol:PSBR "photosystem II subunit R" species:3702
            "Arabidopsis thaliana" [GO:0009507 "chloroplast" evidence=ISM;IDA]
            [GO:0009523 "photosystem II" evidence=IEA;ISS] [GO:0009654 "oxygen
            evolving complex" evidence=IEA] [GO:0015979 "photosynthesis"
            evidence=IEA;ISS] [GO:0042651 "thylakoid membrane" evidence=IEA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0010270 "photosystem II oxygen evolving complex assembly"
            evidence=IEP] [GO:0009579 "thylakoid" evidence=IDA] [GO:0009534
            "chloroplast thylakoid" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0009637 "response to blue light" evidence=RCA]
            [GO:0009644 "response to high light intensity" evidence=RCA]
            [GO:0009744 "response to sucrose stimulus" evidence=RCA]
            [GO:0010114 "response to red light" evidence=RCA] [GO:0010155
            "regulation of proton transport" evidence=RCA] [GO:0010218
            "response to far red light" evidence=RCA] [GO:0019344 "cysteine
            biosynthetic process" evidence=RCA] InterPro:IPR006814 Pfam:PF04725
            EMBL:CP002684 GenomeReviews:CT485782_GR UniGene:At.23809
            GO:GO:0009535 UniGene:At.24218 EMBL:AC002986 GO:GO:0009654
            EMBL:X55970 EMBL:AY070103 EMBL:AY096544 EMBL:AY084512 EMBL:Z17693
            EMBL:Z17592 IPI:IPI00528572 PIR:S17430 RefSeq:NP_178025.1
            UniGene:At.317 IntAct:P27202 STRING:P27202 PaxDb:P27202
            PRIDE:P27202 ProMEX:P27202 EnsemblPlants:AT1G79040.1 GeneID:844245
            KEGG:ath:AT1G79040 TAIR:At1g79040 eggNOG:NOG266360
            HOGENOM:HOG000242632 InParanoid:P27202 KO:K03541 OMA:IYNENEW
            PhylomeDB:P27202 ProtClustDB:PLN00053
            BioCyc:MetaCyc:AT1G79040-MONOMER Genevestigator:P27202
            GermOnline:AT1G79040 GO:GO:0010270 Uniprot:P27202
        Length = 140

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 77/98 (78%), Positives = 86/98 (87%)

Query:    13 KPAPFTVEKSAARGLPSL--AKTSFKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKA 69
             KPA FTVEK+AARGLPSL  A+ SFKIVA G  KIKTDKP+G+NG MDLR+G+DASGRK 
Sbjct:    13 KPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKG 72

Query:    70 KGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGG 107
             KG GVY++VDKYGANVDGYSPIYNEN+WS SGDVY GG
Sbjct:    73 KGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGG 110


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.134   0.394    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      112       100   0.00091  102 3  11 23  0.37    31
                                                     29  0.47    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  483 (51 KB)
  Total size of DFA:  101 KB (2073 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  10.47u 0.10s 10.57t   Elapsed:  00:00:02
  Total cpu time:  10.47u 0.10s 10.57t   Elapsed:  00:00:04
  Start:  Fri May 10 03:01:18 2013   End:  Fri May 10 03:01:22 2013

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