Query 033756
Match_columns 112
No_of_seqs 53 out of 55
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 09:36:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033756.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033756hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pvc_A TRNA 5-methylaminomethy 42.3 7.3 0.00025 32.1 0.8 15 85-99 177-191 (689)
2 1h80_A IOTA-carrageenase; hydr 24.4 27 0.00091 29.0 1.3 15 92-106 387-401 (464)
3 3vyw_A MNMC2; tRNA wobble urid 21.1 20 0.00068 28.5 -0.1 15 85-99 192-206 (308)
4 3tr3_A BOLA; cellular processe 16.1 10 0.00035 25.0 -2.4 8 92-99 74-81 (82)
5 2yuy_A RHO GTPase activating p 15.3 95 0.0033 19.9 2.2 18 81-98 21-38 (126)
6 1nrp_R Receptor based peptide 15.0 52 0.0018 18.3 0.7 13 85-97 12-24 (26)
7 1v60_A BOLA1, riken cDNA 18100 14.7 60 0.002 22.9 1.2 12 91-102 103-114 (123)
8 1nro_R Receptor based peptide 14.0 62 0.0021 18.1 0.9 14 85-98 12-25 (27)
9 2wsc_K Photosystem I reaction 13.7 39 0.0013 24.7 0.0 36 1-39 1-42 (131)
10 1aiw_A Endoglucanase Z, cbdegz 13.0 1.2E+02 0.0042 18.9 2.2 16 84-100 6-21 (62)
No 1
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=42.34 E-value=7.3 Score=32.10 Aligned_cols=15 Identities=33% Similarity=0.913 Sum_probs=11.8
Q ss_pred CCCccccccCCCCCC
Q 033756 85 VDGYSPIYNENDWSP 99 (112)
Q Consensus 85 VDgYSPIY~p~eWs~ 99 (112)
.||+||-+|||-|++
T Consensus 177 lD~f~p~~np~~w~~ 191 (689)
T 3pvc_A 177 LDGFAPAKNPDMWNE 191 (689)
T ss_dssp ECSSCC--CCTTCSH
T ss_pred ECCCCCCCChhhhhH
Confidence 599999999999974
No 2
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A
Probab=24.38 E-value=27 Score=28.96 Aligned_cols=15 Identities=33% Similarity=0.906 Sum_probs=13.5
Q ss_pred ccCCCCCCCCCeecc
Q 033756 92 YNENDWSPSGDVYTG 106 (112)
Q Consensus 92 Y~p~eWs~sGD~Y~g 106 (112)
++||||+.+|..|.|
T Consensus 387 ~~~~~~~~~~~~~~~ 401 (464)
T 1h80_A 387 PTKEQWSKQGQIYIG 401 (464)
T ss_dssp CCTTTCSSTTSCEEE
T ss_pred cCCccccCCCcEEeC
Confidence 579999999999987
No 3
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=21.08 E-value=20 Score=28.53 Aligned_cols=15 Identities=33% Similarity=0.643 Sum_probs=13.7
Q ss_pred CCCccccccCCCCCC
Q 033756 85 VDGYSPIYNENDWSP 99 (112)
Q Consensus 85 VDgYSPIY~p~eWs~ 99 (112)
.||+||-=+||-|++
T Consensus 192 lDgFsP~kNPeLWs~ 206 (308)
T 3vyw_A 192 HDAFSPYKNPELWTL 206 (308)
T ss_dssp ECCSCTTTSGGGGSH
T ss_pred eCCCCcccCcccCCH
Confidence 399999999999986
No 4
>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A {Coxiella burnetii}
Probab=16.07 E-value=10 Score=24.96 Aligned_cols=8 Identities=13% Similarity=0.671 Sum_probs=4.8
Q ss_pred ccCCCCCC
Q 033756 92 YNENDWSP 99 (112)
Q Consensus 92 Y~p~eWs~ 99 (112)
|||+||..
T Consensus 74 ~Tp~Ew~~ 81 (82)
T 3tr3_A 74 YTPDEYER 81 (82)
T ss_dssp ECHHHHHC
T ss_pred CCHHHHhc
Confidence 56666643
No 5
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=15.31 E-value=95 Score=19.92 Aligned_cols=18 Identities=11% Similarity=0.176 Sum_probs=15.9
Q ss_pred cccCCCCccccccCCCCC
Q 033756 81 YGANVDGYSPIYNENDWS 98 (112)
Q Consensus 81 yGANVDgYSPIY~p~eWs 98 (112)
||.++|+|+--++|+++.
T Consensus 21 ~Gf~l~~~t~y~~~~~~~ 38 (126)
T 2yuy_A 21 FGFTLRHFIVYPPESAIQ 38 (126)
T ss_dssp CSCCBCCCCCCCCSSCCC
T ss_pred cceeecCccccCCHHHHH
Confidence 788999999999988886
No 6
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=15.00 E-value=52 Score=18.29 Aligned_cols=13 Identities=23% Similarity=0.695 Sum_probs=10.3
Q ss_pred CCCccccccCCCC
Q 033756 85 VDGYSPIYNENDW 97 (112)
Q Consensus 85 VDgYSPIY~p~eW 97 (112)
-|-|.|.|..+|.
T Consensus 12 ndkyepfwedee~ 24 (26)
T 1nrp_R 12 NDKYEPFWEDEEX 24 (26)
T ss_pred CcccCcccccccc
Confidence 3789999988774
No 7
>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=14.68 E-value=60 Score=22.89 Aligned_cols=12 Identities=8% Similarity=0.318 Sum_probs=9.1
Q ss_pred cccCCCCCCCCC
Q 033756 91 IYNENDWSPSGD 102 (112)
Q Consensus 91 IY~p~eWs~sGD 102 (112)
.|||+||....+
T Consensus 103 t~TP~Ew~~~~~ 114 (123)
T 1v60_A 103 AKTPAQWRENPQ 114 (123)
T ss_dssp EECTTTTTTCCC
T ss_pred ecCHHHHHhccC
Confidence 489999987543
No 8
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=13.99 E-value=62 Score=18.10 Aligned_cols=14 Identities=21% Similarity=0.636 Sum_probs=10.3
Q ss_pred CCCccccccCCCCC
Q 033756 85 VDGYSPIYNENDWS 98 (112)
Q Consensus 85 VDgYSPIY~p~eWs 98 (112)
-|-|.|.|..+|=.
T Consensus 12 ndkyepfwedeekn 25 (27)
T 1nro_R 12 NDKYEPFWEDEEKN 25 (27)
T ss_pred CcccCccccchhhc
Confidence 37789999877643
No 9
>2wsc_K Photosystem I reaction center subunit PSAK, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Hordeum vulgare} PDB: 2wse_K* 2wsf_K* 3lw5_K*
Probab=13.68 E-value=39 Score=24.72 Aligned_cols=36 Identities=31% Similarity=0.302 Sum_probs=0.0
Q ss_pred Ccchhcc--c---cccccCCccccccccccCCCCC-ccceEEEEe
Q 033756 1 MAASVMA--S---SLSLKPAPFTVEKSAARGLPSL-AKTSFKIVA 39 (112)
Q Consensus 1 MAasvm~--s---s~~lkps~f~~~~~~~rglp~l-~R~s~~V~a 39 (112)
||+|+++ | .-.|+|+. ...+++.+|+. .|+++.|.|
T Consensus 1 ma~~~~~~~~~p~f~glr~~~---~~~~~~~~~~~~~r~~~~~r~ 42 (131)
T 2wsc_K 1 MASQLSAMTSVPQFHGLRTYS---SPRSMATLPSLRRRRSQGIRC 42 (131)
T ss_dssp ---------------------------------------------
T ss_pred CcchhhccccCcccccccccC---CccccccccccccccceeeEe
Confidence 7888743 1 11344433 11245555555 445566655
No 10
>1aiw_A Endoglucanase Z, cbdegz; cellulose degradation, cellulose-binding DOMA erwinia chrysanthemi; NMR {Erwinia chrysanthemi} SCOP: b.72.2.1
Probab=13.05 E-value=1.2e+02 Score=18.90 Aligned_cols=16 Identities=31% Similarity=0.773 Sum_probs=12.4
Q ss_pred CCCCccccccCCCCCCC
Q 033756 84 NVDGYSPIYNENDWSPS 100 (112)
Q Consensus 84 NVDgYSPIY~p~eWs~s 100 (112)
.+..| |-|+..+|+..
T Consensus 6 ~~~~y-p~w~~~~W~~g 21 (62)
T 1aiw_A 6 NANVY-PNWVSKDWAGG 21 (62)
T ss_dssp SSCBT-TCCSBSSSSSS
T ss_pred ccccC-CCcccccccCC
Confidence 45566 89999999876
Done!