Query 033756
Match_columns 112
No_of_seqs 53 out of 55
Neff 2.3
Searched_HMMs 13730
Date Mon Mar 25 09:36:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033756.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033756hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dlja3 c.26.3.1 (A:295-402) U 25.7 4.4 0.00032 25.2 -0.9 41 55-96 22-62 (108)
2 d2hqsa1 b.68.4.1 (A:163-431) T 18.3 10 0.00074 23.5 -0.3 9 96-104 45-53 (269)
3 d1d5ra1 b.7.1.1 (A:188-351) Pt 17.6 67 0.0049 20.6 3.8 40 13-52 2-45 (141)
4 d1uala_ c.116.1.4 (A:) tRNA(m1 12.1 31 0.0022 25.4 0.8 18 43-60 49-66 (252)
5 d1oy5a_ c.116.1.4 (A:) tRNA(m1 11.5 34 0.0025 24.9 0.9 15 45-59 49-63 (232)
6 d2i7na1 c.55.1.14 (A:236-381) 9.6 31 0.0022 22.9 0.0 19 68-86 102-124 (146)
7 d2doaa1 a.4.5.81 (A:8-98) RNA 8.7 53 0.0039 19.8 0.9 25 72-96 55-79 (91)
8 d1b78a_ c.51.4.1 (A:) XTP pyro 8.3 45 0.0033 22.1 0.5 12 87-98 141-152 (184)
9 d2vzsa1 b.1.4.1 (A:226-335) Ex 8.1 58 0.0042 19.1 0.9 12 90-101 69-80 (110)
10 d1vgga_ d.256.1.1 (A:) Hypothe 7.8 41 0.003 23.7 0.1 7 85-91 133-139 (161)
No 1
>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}
Probab=25.71 E-value=4.4 Score=25.15 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=32.9
Q ss_pred CcccCccccCCCCcccCCcceeeeeccccCCCCccccccCCC
Q 033756 55 GMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNEND 96 (112)
Q Consensus 55 ~m~~k~~vDa~gRk~kgkGVYqfv~KyGANVDgYSPIY~p~e 96 (112)
|+.+|.++|-- |....--+++...++|++|.-|=|..+..+
T Consensus 22 Gl~fK~n~dD~-R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~ 62 (108)
T d1dlja3 22 RLIMKSNSDNF-RESAIKDVIDILKSKDIKIIIYEPMLNKLE 62 (108)
T ss_dssp CCCSSTTCSCC-TTCHHHHHHHHHHTSSCEEEEECTTCSCCC
T ss_pred EEEECCCCcch-hhhhHHHHHHHHhccccceeeecCCcChhH
Confidence 67899999864 666667788888899999999999876543
No 2
>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=18.32 E-value=10 Score=23.52 Aligned_cols=9 Identities=44% Similarity=1.095 Sum_probs=6.6
Q ss_pred CCCCCCCee
Q 033756 96 DWSPSGDVY 104 (112)
Q Consensus 96 eWs~sGD~Y 104 (112)
.|||+|..-
T Consensus 45 ~wSPDGk~I 53 (269)
T d2hqsa1 45 AWSPDGSKL 53 (269)
T ss_dssp EECTTSSEE
T ss_pred EECCCCCEE
Confidence 588888754
No 3
>d1d5ra1 b.7.1.1 (A:188-351) Pten tumor suppressor (Phoshphoinositide phosphatase), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.57 E-value=67 Score=20.56 Aligned_cols=40 Identities=15% Similarity=0.232 Sum_probs=29.1
Q ss_pred cCCccccccccccCCCCCc----cceEEEEecCceeeecccccc
Q 033756 13 KPAPFTVEKSAARGLPSLA----KTSFKIVAKGGKIKTDKPYGV 52 (112)
Q Consensus 13 kps~f~~~~~~~rglp~l~----R~s~~V~as~~Kikt~kp~G~ 52 (112)
+|.+..|..-.++++|... |.-|+|...+.||-|.+++..
T Consensus 2 ~P~~L~L~~I~l~~vP~f~~ggCrP~~~I~~~~~~v~ts~~~~~ 45 (141)
T d1d5ra1 2 RPVALLFHKMMFETIPMFSGGTCNPQFVVCQLKVKIYSSNSGPT 45 (141)
T ss_dssp CCCEEEEEEEEESSCCCSBTTBCCEEEEEEETTEEEEECCSSCS
T ss_pred CCEeEEEEEEEEECCCccCCCeeEEEEEEEcCCeEEEecCcEeE
Confidence 5666666666778888774 567888777779998886544
No 4
>d1uala_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Haemophilus influenzae [TaxId: 727]}
Probab=12.13 E-value=31 Score=25.42 Aligned_cols=18 Identities=39% Similarity=0.591 Sum_probs=13.9
Q ss_pred eeeeccccccCCCcccCc
Q 033756 43 KIKTDKPYGVNGGMDLRE 60 (112)
Q Consensus 43 Kikt~kp~G~~g~m~~k~ 60 (112)
+--=|+|||.+.||-+|-
T Consensus 49 r~VDD~PyGGGpGMVmk~ 66 (252)
T d1uala_ 49 KTVDDRPYGGGPGMLMMV 66 (252)
T ss_dssp CCCEECCTTCCSCCEECH
T ss_pred cCcCCCcCCCCCcceeec
Confidence 433478999999998763
No 5
>d1oy5a_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Aquifex aeolicus [TaxId: 63363]}
Probab=11.53 E-value=34 Score=24.89 Aligned_cols=15 Identities=47% Similarity=0.669 Sum_probs=12.5
Q ss_pred eeccccccCCCcccC
Q 033756 45 KTDKPYGVNGGMDLR 59 (112)
Q Consensus 45 kt~kp~G~~g~m~~k 59 (112)
-=|+|||.+.||-++
T Consensus 49 VDD~PyGGGpGMVm~ 63 (232)
T d1oy5a_ 49 VDDVPYGGLPGMVLK 63 (232)
T ss_dssp CEECBSSCCSSCEEC
T ss_pred cCccccCCCCceEEe
Confidence 347899999999775
No 6
>d2i7na1 c.55.1.14 (A:236-381) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.63 E-value=31 Score=22.89 Aligned_cols=19 Identities=21% Similarity=0.419 Sum_probs=11.5
Q ss_pred cccCCcceeeee----ccccCCC
Q 033756 68 KAKGKGVYQFVD----KYGANVD 86 (112)
Q Consensus 68 k~kgkGVYqfv~----KyGANVD 86 (112)
+.+|.|-|+|.+ ++|.+||
T Consensus 102 ~ATGGGA~Kf~~~~~~~Lgv~v~ 124 (146)
T d2i7na1 102 CATGGGAFKFEEDFRMIADLQLH 124 (146)
T ss_dssp CEESTTTTGGGTTC-------CC
T ss_pred EEeCccHHHHHHHHHHHcCCceE
Confidence 468999999987 6777665
No 7
>d2doaa1 a.4.5.81 (A:8-98) RNA polymerase II elongation factor ELL {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.66 E-value=53 Score=19.80 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.3
Q ss_pred CcceeeeeccccCCCCccccccCCC
Q 033756 72 KGVYQFVDKYGANVDGYSPIYNEND 96 (112)
Q Consensus 72 kGVYqfv~KyGANVDgYSPIY~p~e 96 (112)
.|+|..=+.|=..||-|-|-||.+|
T Consensus 55 ~g~Y~LK~~~~~Evdp~~~~Ys~~d 79 (91)
T d2doaa1 55 DGTCTLQDCMYKDVQKDWPGYSEGD 79 (91)
T ss_dssp SCEEECCSSGGGGCCSCCTTCCSHH
T ss_pred CceEeeHHHHHhHcCccCCCCCHHH
Confidence 5789988888889999999998764
No 8
>d1b78a_ c.51.4.1 (A:) XTP pyrophosphatase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=8.28 E-value=45 Score=22.14 Aligned_cols=12 Identities=17% Similarity=0.404 Sum_probs=9.8
Q ss_pred CccccccCCCCC
Q 033756 87 GYSPIYNENDWS 98 (112)
Q Consensus 87 gYSPIY~p~eWs 98 (112)
||-||+-|++..
T Consensus 141 GyDpiF~p~~~~ 152 (184)
T d1b78a_ 141 AYDSIFIPEEEE 152 (184)
T ss_dssp GGGGSEEETTCS
T ss_pred CCceEEEECCCC
Confidence 799999998754
No 9
>d2vzsa1 b.1.4.1 (A:226-335) Exochitosanase CsxA, domains 2, 4 and 5 {Amycolatopsis orientalis [TaxId: 31958]}
Probab=8.10 E-value=58 Score=19.11 Aligned_cols=12 Identities=33% Similarity=0.703 Sum_probs=10.2
Q ss_pred ccccCCCCCCCC
Q 033756 90 PIYNENDWSPSG 101 (112)
Q Consensus 90 PIY~p~eWs~sG 101 (112)
+|=+|+-|+|.|
T Consensus 69 ~i~~p~LW~P~~ 80 (110)
T d2vzsa1 69 GLDRPNVWWPAG 80 (110)
T ss_dssp EEESCCCCCCTT
T ss_pred EeCCCceeCCCC
Confidence 688999999875
No 10
>d1vgga_ d.256.1.1 (A:) Hypothetical protein TT1634 (TTHA1091) {Thermus thermophilus [TaxId: 274]}
Probab=7.80 E-value=41 Score=23.69 Aligned_cols=7 Identities=43% Similarity=1.421 Sum_probs=4.7
Q ss_pred CCCcccc
Q 033756 85 VDGYSPI 91 (112)
Q Consensus 85 VDgYSPI 91 (112)
||||||-
T Consensus 133 vDG~~p~ 139 (161)
T d1vgga_ 133 MDGFTPL 139 (161)
T ss_dssp EESCCCC
T ss_pred ecCCCCC
Confidence 6777774
Done!