BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033757
(112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1K30|A Chain A, Crystal Structure Analysis Of Squash (Cucurbita Moschata)
Glycerol-3-Phosphate (1)-Acyltransferase
Length = 368
Score = 169 bits (427), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 77/111 (69%), Positives = 92/111 (82%)
Query: 1 MRRLAEHSGIPGHIYPLALLCHDIMPPPPQVEREVGEKRVISFHGAGLSVAPEISFADII 60
MRRL +HS +PGH++PLALLCHDIMPPP QVE E+GEKRVI+F+GAGLSVAPEISF +I
Sbjct: 258 MRRLIQHSDVPGHLFPLALLCHDIMPPPSQVEIEIGEKRVIAFNGAGLSVAPEISFEEIA 317
Query: 61 TASKNPEEAKEVYTQAFYNSVTEQYNVLKSAIHGQQGLKASIPSVSLSQPW 111
KNPEE +E Y++A ++SV QYNVLK+AI G+QGL AS VSLSQPW
Sbjct: 318 ATHKNPEEVREAYSKALFDSVAMQYNVLKTAISGKQGLGASTADVSLSQPW 368
>pdb|1IUQ|A Chain A, The 1.55 A Crystal Structure Of Glycerol-3-phosphate
Acyltransferase
Length = 367
Score = 164 bits (414), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 75/110 (68%), Positives = 90/110 (81%)
Query: 2 RRLAEHSGIPGHIYPLALLCHDIMPPPPQVEREVGEKRVISFHGAGLSVAPEISFADIIT 61
RRL +HS +PGH++PLALLCHDI PPP QVE E+GEKRVI+F+GAGLSVAPEISF +I
Sbjct: 258 RRLIQHSDVPGHLFPLALLCHDIXPPPSQVEIEIGEKRVIAFNGAGLSVAPEISFEEIAA 317
Query: 62 ASKNPEEAKEVYTQAFYNSVTEQYNVLKSAIHGQQGLKASIPSVSLSQPW 111
KNPEE +E Y++A ++SV QYNVLK+AI G+QGL AS VSLSQPW
Sbjct: 318 THKNPEEVREAYSKALFDSVAXQYNVLKTAISGKQGLGASTADVSLSQPW 367
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 28 PPQVEREVGEKRVISFHGAGLSVAPEISFADI 59
PP+ + R++S HG +SV PE +F D+
Sbjct: 94 PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDL 125
>pdb|2WWB|A Chain A, Cryo-Em Structure Of The Mammalian Sec61 Complex Bound To
The Actively Translating Wheat Germ 80s Ribosome
Length = 476
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 8 SGIPGHIYPLALLCHDIMPP 27
SG P YP+ LCH + PP
Sbjct: 329 SGGPARAYPVGGLCHYLSPP 348
>pdb|2BO9|B Chain B, Human Carboxypeptidase A4 In Complex With Human Latexin.
pdb|2BO9|D Chain D, Human Carboxypeptidase A4 In Complex With Human Latexin
Length = 222
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 12 GHIYPLALLCHDIMPPPPQVEREVGEKRVISFHGAGLSVAPEISFADIITASKNPEEAKE 71
GH Y L +I+ Q + +V + + G APE++F KNP+E
Sbjct: 49 GHKYRLKFAVEEII----QKQVKVNCTAEVLYPSTGQETAPEVNFTFEGETGKNPDEEDN 104
Query: 72 VYTQ 75
+ Q
Sbjct: 105 TFYQ 108
>pdb|3CQG|A Chain A, Nucleoporin Nup107/nup133 Interaction Complex, Delta
Finger Mutant
Length = 246
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 62 ASKNPEEAKEVYTQAFYNSVTEQYNVLKSAIHGQQGLKASIPS 104
ASK E AKEV+ + +S+ E YN + +QG+++ +P+
Sbjct: 46 ASKKHEAAKEVFVKIPQDSIAEIYNQCE-----EQGMESPLPA 83
>pdb|3I4R|A Chain A, Nup107(Aa658-925)NUP133(AA517-1156) Complex, H.Sapiens
Length = 277
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 62 ASKNPEEAKEVYTQAFYNSVTEQYNVLKSAIHGQQGLKASIPS 104
ASK E AKEV+ + +S+ E YN + +QG+++ +P+
Sbjct: 46 ASKKHEAAKEVFVKIPQDSIAEIYNQCE-----EQGMESPLPA 83
>pdb|3CQC|A Chain A, Nucleoporin Nup107/nup133 Interaction Complex
Length = 270
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 62 ASKNPEEAKEVYTQAFYNSVTEQYNVLKSAIHGQQGLKASIPS 104
ASK E AKEV+ + +S+ E YN + +QG+++ +P+
Sbjct: 46 ASKKHEAAKEVFVKIPQDSIAEIYNQCE-----EQGMESPLPA 83
>pdb|2VDD|A Chain A, Crystal Structure Of The Open State Of Tolc Outer Membrane
Component Of Mutlidrug Efflux Pumps
pdb|2VDD|B Chain B, Crystal Structure Of The Open State Of Tolc Outer Membrane
Component Of Mutlidrug Efflux Pumps
pdb|2VDD|C Chain C, Crystal Structure Of The Open State Of Tolc Outer Membrane
Component Of Mutlidrug Efflux Pumps
pdb|2VDE|A Chain A, Crystal Structure Of The Open State Of Tolc Outer Membrane
Component Of Mutlidrug Efflux Pumps
pdb|2VDE|B Chain B, Crystal Structure Of The Open State Of Tolc Outer Membrane
Component Of Mutlidrug Efflux Pumps
pdb|2VDE|C Chain C, Crystal Structure Of The Open State Of Tolc Outer Membrane
Component Of Mutlidrug Efflux Pumps
Length = 460
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 46 AGLSVAPEISFADIITASKNPEEAKEVYTQAFYNSVTEQYNVLKSAI 92
AG SV E + D++ A+ AK+ A YN + Q N+ KSA+
Sbjct: 382 AGFSVGTE-TIVDVLDATTTLYNAKQELANARYNYLINQLNI-KSAL 426
>pdb|2A0U|A Chain A, Crystal Structure Of The Eukaryotic Initiation Factor 2b
From Leishmania Major At 2.1 A Resolution
pdb|2A0U|B Chain B, Crystal Structure Of The Eukaryotic Initiation Factor 2b
From Leishmania Major At 2.1 A Resolution
Length = 383
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 43 FHGAGLSVAPEISFADIITASKNPEEAKEVY-TQAFYNSVTEQ 84
FHG L VA + D+ TAS N E +E T+ N VT+Q
Sbjct: 288 FHGVKLYVAAPTTTLDVKTASGNHVEIEEREPTEITTNLVTKQ 330
>pdb|1OAT|A Chain A, Ornithine Aminotransferase
pdb|1OAT|B Chain B, Ornithine Aminotransferase
pdb|1OAT|C Chain C, Ornithine Aminotransferase
pdb|2OAT|A Chain A, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|B Chain B, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|C Chain C, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
Length = 439
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 14/105 (13%)
Query: 22 HDIMPPPPQVER-------EVGEKRVISFHGAGLSVAPEISFADIITASKNPEEAKEVYT 74
H+ P P +ER +V ++ F + +V I+ A K+ + + +
Sbjct: 53 HNYHPLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTS 112
Query: 75 QAFYNSVTEQYNVLKSAIHG-------QQGLKASIPSVSLSQPWG 112
+AFYN+V +Y + + G++A + L++ WG
Sbjct: 113 RAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWG 157
>pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|B Chain B, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|C Chain C, Ornithine Aminotransferase Mutant Y85i
Length = 439
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 14/105 (13%)
Query: 22 HDIMPPPPQVER-------EVGEKRVISFHGAGLSVAPEISFADIITASKNPEEAKEVYT 74
H+ P P +ER +V ++ F + +V I+ A K+ + + +
Sbjct: 53 HNYHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTS 112
Query: 75 QAFYNSVTEQYNVLKSAIHG-------QQGLKASIPSVSLSQPWG 112
+AFYN+V +Y + + G++A + L++ WG
Sbjct: 113 RAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWG 157
>pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|B Chain B, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|C Chain C, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
Length = 439
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 14/105 (13%)
Query: 22 HDIMPPPPQVER-------EVGEKRVISFHGAGLSVAPEISFADIITASKNPEEAKEVYT 74
H+ P P +ER +V ++ F + +V I+ A K+ + + +
Sbjct: 53 HNAHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTS 112
Query: 75 QAFYNSVTEQYNVLKSAIHG-------QQGLKASIPSVSLSQPWG 112
+AFYN+V +Y + + G++A + L++ WG
Sbjct: 113 RAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWG 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,350,511
Number of Sequences: 62578
Number of extensions: 119606
Number of successful extensions: 374
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 361
Number of HSP's gapped (non-prelim): 21
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)