Query 033757
Match_columns 112
No_of_seqs 49 out of 51
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 05:57:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033757.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033757hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02349 glycerol-3-phosphate 100.0 5.3E-47 1.1E-51 321.0 7.9 99 1-99 328-426 (426)
2 cd07985 LPLAT_GPAT Lysophospho 100.0 1.4E-35 2.9E-40 235.7 5.0 88 1-88 148-235 (235)
3 cd07987 LPLAT_MGAT-like Lysoph 90.9 0.44 9.5E-06 35.5 4.3 80 3-88 122-210 (212)
4 PLN02783 diacylglycerol O-acyl 89.6 0.94 2E-05 37.3 5.6 84 3-91 203-304 (315)
5 cd06551 LPLAT Lysophospholipid 88.4 0.69 1.5E-05 32.8 3.5 59 4-86 129-187 (187)
6 PRK15018 1-acyl-sn-glycerol-3- 87.1 2 4.3E-05 33.9 5.8 74 3-95 165-239 (245)
7 PTZ00261 acyltransferase; Prov 80.0 4 8.7E-05 35.0 5.1 83 3-100 242-329 (355)
8 COG0321 LipB Lipoate-protein l 68.7 2.4 5.2E-05 34.5 1.0 20 37-56 150-169 (221)
9 PLN02901 1-acyl-sn-glycerol-3- 67.7 12 0.00027 28.2 4.7 62 3-85 148-210 (214)
10 PF00658 PABP: Poly-adenylate 66.8 9.4 0.0002 25.6 3.4 32 63-94 10-41 (72)
11 TIGR00506 ribB 3,4-dihydroxy-2 63.5 5.8 0.00013 31.4 2.2 40 9-48 122-161 (199)
12 KOG4077 Cytochrome c oxidase, 53.3 4.5 9.7E-05 31.3 0.0 27 19-45 75-101 (149)
13 cd06257 DnaJ DnaJ domain or J- 50.6 8.3 0.00018 22.5 0.9 18 72-89 37-54 (55)
14 smart00271 DnaJ DnaJ molecular 49.8 11 0.00024 22.4 1.3 20 71-90 38-57 (60)
15 PRK14348 lipoate-protein ligas 48.1 29 0.00063 27.8 3.9 22 34-55 154-175 (221)
16 cd07989 LPLAT_AGPAT-like Lysop 46.6 19 0.00042 25.3 2.4 47 3-59 123-169 (184)
17 cd07992 LPLAT_AAK14816-like Ly 46.5 29 0.00062 25.7 3.4 36 44-84 166-201 (203)
18 PF11269 DUF3069: Protein of u 46.2 21 0.00046 26.8 2.6 49 46-94 58-109 (121)
19 PRK14345 lipoate-protein ligas 45.7 30 0.00066 27.9 3.7 26 34-59 151-177 (234)
20 PF05114 DUF692: Protein of un 42.5 8.6 0.00019 31.6 0.1 27 27-53 42-68 (274)
21 PRK14346 lipoate-protein ligas 41.1 40 0.00087 27.4 3.7 22 34-55 165-186 (230)
22 PF03509 Connexin50: Gap junct 38.8 12 0.00026 25.6 0.3 23 4-26 9-31 (66)
23 PRK05409 hypothetical protein; 38.6 16 0.00034 30.2 1.1 31 27-57 44-76 (281)
24 COG0108 RibB 3,4-dihydroxy-2-b 36.7 15 0.00033 29.5 0.7 46 9-55 121-166 (203)
25 PF07709 SRR: Seven Residue Re 36.5 22 0.00047 17.0 1.0 12 78-89 3-14 (14)
26 PF07431 DUF1512: Protein of u 36.4 81 0.0018 27.5 5.0 61 36-96 262-336 (355)
27 TIGR00214 lipB lipoate-protein 33.5 23 0.00051 27.6 1.3 23 34-56 120-142 (184)
28 COG3081 Nucleoid-associated pr 33.5 45 0.00097 28.7 3.0 31 56-86 205-235 (335)
29 PRK01792 ribB 3,4-dihydroxy-2- 33.5 19 0.00041 28.9 0.8 46 9-55 132-177 (214)
30 cd07986 LPLAT_ACT14924-like Ly 32.5 36 0.00078 25.5 2.1 62 3-68 130-200 (210)
31 KOG2848 1-acyl-sn-glycerol-3-p 29.6 1.2E+02 0.0026 25.7 4.9 69 4-89 190-259 (276)
32 PHA03002 Hypothetical protein; 29.4 1.3E+02 0.0027 28.5 5.4 58 27-96 258-319 (679)
33 smart00517 PolyA C-terminal do 29.1 31 0.00067 23.0 1.1 30 65-94 1-30 (64)
34 PF02284 COX5A: Cytochrome c o 28.7 24 0.00052 26.1 0.5 24 19-42 36-59 (108)
35 cd00923 Cyt_c_Oxidase_Va Cytoc 28.5 32 0.00069 25.2 1.2 28 19-46 33-60 (103)
36 cd00296 SIR2 SIR2 superfamily 28.3 31 0.00067 25.7 1.1 23 38-60 1-24 (222)
37 PRK14347 lipoate-protein ligas 28.2 33 0.00072 27.4 1.3 22 34-55 145-166 (209)
38 PF13880 Acetyltransf_13: ESCO 27.8 56 0.0012 22.0 2.2 37 65-110 14-50 (70)
39 PRK14343 lipoate-protein ligas 26.8 98 0.0021 25.2 3.8 22 34-55 155-176 (235)
40 PF05794 Tcp11: T-complex prot 26.1 80 0.0017 26.3 3.3 38 49-86 7-45 (441)
41 PRK14341 lipoate-protein ligas 25.4 37 0.00079 27.1 1.1 23 34-56 148-170 (213)
42 PRK14349 lipoate-protein ligas 25.1 39 0.00084 27.3 1.2 22 34-55 141-162 (220)
43 PF12944 DUF3840: Protein of u 23.7 37 0.0008 24.8 0.8 14 19-32 85-98 (104)
44 PF11833 DUF3353: Protein of u 23.2 1.2E+02 0.0025 23.8 3.5 32 52-84 2-40 (194)
45 KOG1391 Acetyl-CoA acetyltrans 23.1 47 0.001 28.8 1.4 21 73-93 143-163 (396)
46 PRK14342 lipoate-protein ligas 23.0 45 0.00098 26.6 1.2 23 34-56 140-162 (213)
47 PF00926 DHBP_synthase: 3,4-di 22.8 27 0.00058 27.5 -0.1 46 9-55 117-162 (194)
48 PTZ00275 biotin-acetyl-CoA-car 22.8 2.9E+02 0.0062 22.4 5.8 21 70-90 199-219 (285)
49 PF15368 BioT2: Spermatogenesi 22.7 1.3E+02 0.0028 23.9 3.6 50 34-92 107-158 (170)
50 PRK14344 lipoate-protein ligas 21.6 51 0.0011 26.6 1.3 26 34-59 158-184 (223)
51 PRK00910 ribB 3,4-dihydroxy-2- 21.5 36 0.00077 27.5 0.3 46 9-55 133-178 (218)
52 PRK02289 4-oxalocrotonate taut 21.1 1.2E+02 0.0025 18.7 2.6 22 66-87 13-34 (60)
53 PRK06814 acylglycerophosphoeth 21.1 2.3E+02 0.005 26.1 5.4 74 3-84 549-622 (1140)
54 COG2433 Uncharacterized conser 20.3 73 0.0016 29.8 2.1 56 18-78 291-352 (652)
55 PRK08330 biotin--protein ligas 20.1 3.3E+02 0.0071 21.0 5.4 49 41-89 117-170 (236)
No 1
>PLN02349 glycerol-3-phosphate acyltransferase
Probab=100.00 E-value=5.3e-47 Score=321.01 Aligned_cols=99 Identities=64% Similarity=1.030 Sum_probs=97.6
Q ss_pred ChhhhhhcCCCcceeeehhhhccCCCCChhhhhhhcceeeeeeecceeeeccccchhhhhhccCChHHHHHHHHHHHHHH
Q 033757 1 MRRLAEHSGIPGHIYPLALLCHDIMPPPPQVEREVGEKRVISFHGAGLSVAPEISFADIITASKNPEEAKEVYTQAFYNS 80 (112)
Q Consensus 1 mR~L~~~s~~ptHfyPlAL~tydImPPP~~vekeIGE~R~i~f~gvgls~g~EI~~~~~~~~~~~~eear~a~s~~ly~~ 80 (112)
||+|++|+|+|||||||||+||||||||+||||+|||+|+|+||||||||||||+|++++..++|++|+|++||+++|++
T Consensus 328 mR~l~~~s~~ptHfYPlAl~~yDImPPP~~VEkeIGE~R~v~F~gvGlsvg~EI~~~~~~~~~~~~~e~r~~~t~~~~~~ 407 (426)
T PLN02349 328 MRRLTEKSKAPGHFYPLAMLSYDIMPPPPQVEKEIGERRLVGFTGVGLSVGEEIDFSDITAACEGGAEAREAFTQAAYAS 407 (426)
T ss_pred HHHHHHhcCCCccccchHHHhCccCCCccccccccCceeeeeeecceeeeccccchHhhhhhcCChHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCC
Q 033757 81 VTEQYNVLKSAIHGQQGLK 99 (112)
Q Consensus 81 V~~~Y~~l~~AI~~~~g~~ 99 (112)
|++||++|++||||++|+.
T Consensus 408 V~~~Y~~L~~ai~g~~~~~ 426 (426)
T PLN02349 408 VVEQYAVLKSAIHGGQGLA 426 (426)
T ss_pred HHHHHHHHHHhccCCCCCC
Confidence 9999999999999999974
No 2
>cd07985 LPLAT_GPAT Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT. Lysophospholipid acyltransferase (LPLAT) superfamily member: glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB). LPLATs are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. This subgroup includes glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB).
Probab=100.00 E-value=1.4e-35 Score=235.68 Aligned_cols=88 Identities=53% Similarity=0.954 Sum_probs=86.3
Q ss_pred ChhhhhhcCCCcceeeehhhhccCCCCChhhhhhhcceeeeeeecceeeeccccchhhhhhccCChHHHHHHHHHHHHHH
Q 033757 1 MRRLAEHSGIPGHIYPLALLCHDIMPPPPQVEREVGEKRVISFHGAGLSVAPEISFADIITASKNPEEAKEVYTQAFYNS 80 (112)
Q Consensus 1 mR~L~~~s~~ptHfyPlAL~tydImPPP~~vekeIGE~R~i~f~gvgls~g~EI~~~~~~~~~~~~eear~a~s~~ly~~ 80 (112)
||+|+++||+|||||||||+||||||||++|||+|||+|+++|+||||+||++|+|+++++.++|++++|+++|+++|++
T Consensus 148 ~~~La~~s~~p~hi~Plai~~ydi~Ppp~~v~~~ige~r~~~f~~v~i~vg~~i~~~~~~~~~~d~~e~~~~~~~~i~~~ 227 (235)
T cd07985 148 MRLLAQKSRVPTHLYPMALLTYDIMPPPKQVEKEIGEKRAVAFTGVGLAVGEEIDFSAIAATHKDPEEVREAFSKAAFDS 227 (235)
T ss_pred HHHHHHhcCCCceEEeeEEEeecccCCCccccccccccccccccceEEEecCCccchhhhcccCCcHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 033757 81 VTEQYNVL 88 (112)
Q Consensus 81 V~~~Y~~l 88 (112)
|+++|++|
T Consensus 228 v~~~y~~l 235 (235)
T cd07985 228 VKRLYNVL 235 (235)
T ss_pred HHHHHhcC
Confidence 99999985
No 3
>cd07987 LPLAT_MGAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this suubgroup are such LPLATs as 2-acylglycerol O-acyltransferase (MGAT), and similar proteins.
Probab=90.86 E-value=0.44 Score=35.46 Aligned_cols=80 Identities=19% Similarity=0.160 Sum_probs=51.6
Q ss_pred hhhhhcCCCcceeeehhh-hccCCCCChh--------hhhhhcceeeeeeecceeeeccccchhhhhhccCChHHHHHHH
Q 033757 3 RLAEHSGIPGHIYPLALL-CHDIMPPPPQ--------VEREVGEKRVISFHGAGLSVAPEISFADIITASKNPEEAKEVY 73 (112)
Q Consensus 3 ~L~~~s~~ptHfyPlAL~-tydImPPP~~--------vekeIGE~R~i~f~gvgls~g~EI~~~~~~~~~~~~eear~a~ 73 (112)
+||.++|+| ++|+++. +.+.+|--.. ....+...|. ..+-+.||+-|...+..... .+++..+.+
T Consensus 122 ~lA~~~~~p--IvPv~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~~---~~i~v~~G~Pi~~~~~~~~~-~~~~~~~~~ 195 (212)
T cd07987 122 RLALRAGAP--IVPVFTFGEEELFRVLGDPDGPVGKRLFRLLPLPRR---LPLYPVFGEPIVVPRPPIPD-PPDEDVEEL 195 (212)
T ss_pred HHHHHcCCC--eEeEEEeCcHHHHhhhccCCCCceeehhceeccCCC---CcceEEeCCCccCCCCCCCC-cCHHHHHHH
Confidence 578888987 8999994 6666652111 1112222221 57889999999987653222 334455668
Q ss_pred HHHHHHHHHHHHHHH
Q 033757 74 TQAFYNSVTEQYNVL 88 (112)
Q Consensus 74 s~~ly~~V~~~Y~~l 88 (112)
.+.+.+.+.++|+.-
T Consensus 196 ~~~~~~~l~~l~~~~ 210 (212)
T cd07987 196 HQKYIAALRELIEKH 210 (212)
T ss_pred HHHHHHHHHHHHHHh
Confidence 889999999988753
No 4
>PLN02783 diacylglycerol O-acyltransferase
Probab=89.57 E-value=0.94 Score=37.26 Aligned_cols=84 Identities=14% Similarity=0.237 Sum_probs=54.5
Q ss_pred hhhhhcCCCcceeeehhh----hccCCCCChh----hhhhhcceeee----------eeecceeeeccccchhhhhhccC
Q 033757 3 RLAEHSGIPGHIYPLALL----CHDIMPPPPQ----VEREVGEKRVI----------SFHGAGLSVAPEISFADIITASK 64 (112)
Q Consensus 3 ~L~~~s~~ptHfyPlAL~----tydImPPP~~----vekeIGE~R~i----------~f~gvgls~g~EI~~~~~~~~~~ 64 (112)
+||.++|+| +.|++.. +|+..+|... +.+.+|=.-.. ...++.+-||+-|++++... +
T Consensus 203 ~lA~~~g~P--IVPv~i~G~~~~~~~~~~~~~~~~~l~r~~~~~p~~~wg~~~~piP~~~~i~vvvG~PI~v~~~~~--~ 278 (315)
T PLN02783 203 KIAMETGAP--LVPVFCFGQTRAYKWWKPGGPLVPKLSRAIGFTPIVFWGRYGSPIPHRTPMHVVVGKPIEVKKNPQ--P 278 (315)
T ss_pred HHHHHcCCC--EEEEEEECchhhhhhhcCCccHHHHHHHhcCcCceeeecccCcccCCCceEEEEecCCccCCCCCC--C
Confidence 578888888 9999866 6776665422 22323211111 12678889999999886542 3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033757 65 NPEEAKEVYTQAFYNSVTEQYNVLKSA 91 (112)
Q Consensus 65 ~~eear~a~s~~ly~~V~~~Y~~l~~A 91 (112)
+. |.-+.+.+.+.+.+++.|+.-+.+
T Consensus 279 ~~-e~v~~~~~~~~~al~~L~~~~k~~ 304 (315)
T PLN02783 279 SQ-EEVAEVLEQFVEALQDLFEKHKAR 304 (315)
T ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33 333557778888889988887764
No 5
>cd06551 LPLAT Lysophospholipid acyltransferases (LPLATs) of glycerophospholipid biosynthesis. Lysophospholipid acyltransferase (LPLAT) superfamily members are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis. These proteins catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this superfamily are LPLATs such as glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB), 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), lysophosphatidylcholine acyltransferase 1 (LPCAT-1), lysophosphatidylethanolamine acyltransferase (LPEAT, also known as, MBOAT2, membrane-bound O-acyltransferase domain-containing protein 2), lipid A biosynthesis lauroyl/myristoyl acyltransferase, 2-acylglycerol O-acyltransferase (MGAT), dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-p
Probab=88.37 E-value=0.69 Score=32.79 Aligned_cols=59 Identities=24% Similarity=0.249 Sum_probs=41.7
Q ss_pred hhhhcCCCcceeeehhhhccCCCCChhhhhhhcceeeeeeecceeeeccccchhhhhhccCChHHHHHHHHHHHHHHHHH
Q 033757 4 LAEHSGIPGHIYPLALLCHDIMPPPPQVEREVGEKRVISFHGAGLSVAPEISFADIITASKNPEEAKEVYTQAFYNSVTE 83 (112)
Q Consensus 4 L~~~s~~ptHfyPlAL~tydImPPP~~vekeIGE~R~i~f~gvgls~g~EI~~~~~~~~~~~~eear~a~s~~ly~~V~~ 83 (112)
|++++ ..+++|+++...+... ..+..+-+.++++|.+++... ++++++.+.+.|.+
T Consensus 129 la~~~--~~~IvPv~i~~~~~~~--------------~~~~~~~i~~~~pi~~~~~~~--------~~~~~~~~~~~~~~ 184 (187)
T cd06551 129 LAEKA--GVPIVPVALRYTFELF--------------EQFPEIFVRIGPPIPYAETAL--------GEELAAELANRLTR 184 (187)
T ss_pred HHHHc--CCcEEEEEEecccccc--------------CCCCcEEEEECCCcccccccc--------HHHHHHHHHHHHHH
Confidence 45554 4579999998776654 234457788899999776432 56788888888888
Q ss_pred HHH
Q 033757 84 QYN 86 (112)
Q Consensus 84 ~Y~ 86 (112)
+|+
T Consensus 185 ~~~ 187 (187)
T cd06551 185 LLD 187 (187)
T ss_pred hcC
Confidence 764
No 6
>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional
Probab=87.10 E-value=2 Score=33.90 Aligned_cols=74 Identities=11% Similarity=0.160 Sum_probs=51.7
Q ss_pred hhhhhcCCCcceeeehhh-hccCCCCChhhhhhhcceeeeeeecceeeeccccchhhhhhccCChHHHHHHHHHHHHHHH
Q 033757 3 RLAEHSGIPGHIYPLALL-CHDIMPPPPQVEREVGEKRVISFHGAGLSVAPEISFADIITASKNPEEAKEVYTQAFYNSV 81 (112)
Q Consensus 3 ~L~~~s~~ptHfyPlAL~-tydImPPP~~vekeIGE~R~i~f~gvgls~g~EI~~~~~~~~~~~~eear~a~s~~ly~~V 81 (112)
+||.++|+| +.|+++. +++++|. .+ ..-+.|-+.+++-|+.+++. ++.++++.+.+.+..
T Consensus 165 ~lA~~~~~P--IvPv~i~g~~~~~~~-~~----------~~~g~i~v~~~~PI~~~~~~------~~~~~~l~~~v~~~i 225 (245)
T PRK15018 165 HAAIAAGVP--IIPVCVSTTSNKINL-NR----------LHNGLVIVEMLPPIDVSQYG------KDQVRELAAHCRSIM 225 (245)
T ss_pred HHHHHcCCC--EEEEEEECccccccc-CC----------ccCeeEEEEEcCCCcCCCCC------hhhHHHHHHHHHHHH
Confidence 578889999 9999997 4556642 11 12345788899999977553 122456788888888
Q ss_pred HHHHHHHHHhhcCC
Q 033757 82 TEQYNVLKSAIHGQ 95 (112)
Q Consensus 82 ~~~Y~~l~~AI~~~ 95 (112)
.++|..|.+--.++
T Consensus 226 ~~~~~~l~~~~~~~ 239 (245)
T PRK15018 226 EQKIAELDKEVAER 239 (245)
T ss_pred HHHHHHHHHHHHhh
Confidence 88888887765554
No 7
>PTZ00261 acyltransferase; Provisional
Probab=80.04 E-value=4 Score=35.01 Aligned_cols=83 Identities=10% Similarity=0.135 Sum_probs=51.3
Q ss_pred hhhhhcCCCcceeeehhh-hccCCCCChhhhhhhcceeeeeeecceeeecc-ccchhhhhhccCChHH---HHHHHHHHH
Q 033757 3 RLAEHSGIPGHIYPLALL-CHDIMPPPPQVEREVGEKRVISFHGAGLSVAP-EISFADIITASKNPEE---AKEVYTQAF 77 (112)
Q Consensus 3 ~L~~~s~~ptHfyPlAL~-tydImPPP~~vekeIGE~R~i~f~gvgls~g~-EI~~~~~~~~~~~~ee---ar~a~s~~l 77 (112)
+|+.++|+| ++|.++. +++++|. .. -+.. .-+.+-+.||+ .|++++. +.++ .-+.+-+.+
T Consensus 242 ~LAieagvP--IVPvai~Gs~~~wP~-g~---~l~~----~pg~I~V~iG~~PI~~~~~-----~~~eL~~~lr~lmqe~ 306 (355)
T PTZ00261 242 ATIIKHRME--VYYMVSVGSEKTWPW-WM---MIGG----LPADMHIRIGAYPIDYDRD-----SSKDVAVGLQQRMQKV 306 (355)
T ss_pred HHHHHcCCC--EEEEEEeChhhcCCC-CC---ccCC----CCceEEEEECCCCCCCCCC-----CHHHHHHHHHHHHHHH
Confidence 467788888 7898888 7888864 21 0100 12346688898 8886643 2222 113355667
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCc
Q 033757 78 YNSVTEQYNVLKSAIHGQQGLKA 100 (112)
Q Consensus 78 y~~V~~~Y~~l~~AI~~~~g~~a 100 (112)
++.+...+..++.|=...+|+-+
T Consensus 307 ~~~I~~el~~~~~~~~~~~~~~~ 329 (355)
T PTZ00261 307 RDEIAAEVAAAEEARRRRRGIVA 329 (355)
T ss_pred HHHHHHHHHhhhHHHhhhcccch
Confidence 77777777777777766667644
No 8
>COG0321 LipB Lipoate-protein ligase B [Coenzyme metabolism]
Probab=68.66 E-value=2.4 Score=34.49 Aligned_cols=20 Identities=35% Similarity=0.574 Sum_probs=17.7
Q ss_pred ceeeeeeecceeeeccccch
Q 033757 37 EKRVISFHGAGLSVAPEISF 56 (112)
Q Consensus 37 E~R~i~f~gvgls~g~EI~~ 56 (112)
=+|.|+|||+.||++.+++.
T Consensus 150 irr~vs~HGlALNv~~DL~~ 169 (221)
T COG0321 150 IRRGVTFHGLALNVNMDLSP 169 (221)
T ss_pred EecccceeeeEEeccCCchh
Confidence 47999999999999998763
No 9
>PLN02901 1-acyl-sn-glycerol-3-phosphate acyltransferase
Probab=67.67 E-value=12 Score=28.23 Aligned_cols=62 Identities=18% Similarity=0.341 Sum_probs=40.4
Q ss_pred hhhhhcCCCcceeeehh-hhccCCCCChhhhhhhcceeeeeeecceeeeccccchhhhhhccCChHHHHHHHHHHHHHHH
Q 033757 3 RLAEHSGIPGHIYPLAL-LCHDIMPPPPQVEREVGEKRVISFHGAGLSVAPEISFADIITASKNPEEAKEVYTQAFYNSV 81 (112)
Q Consensus 3 ~L~~~s~~ptHfyPlAL-~tydImPPP~~vekeIGE~R~i~f~gvgls~g~EI~~~~~~~~~~~~eear~a~s~~ly~~V 81 (112)
+||.++|+| +.|+++ -+++++|..... .....-+-+.+++.|+.+ + ++.+++.+++.+
T Consensus 148 ~lA~~~~~p--IvPv~i~g~~~~~~~~~~~--------~~~~~~i~v~~~~pi~~~-------~----~~~l~~~~~~~i 206 (214)
T PLN02901 148 SVAAKTGVP--VVPITLVGTGKIMPNGKEG--------ILNPGSVKVVIHPPIEGS-------D----ADELCNEARKVI 206 (214)
T ss_pred HHHHHcCCC--EEEEEEecchhhCcCCCcc--------cccCCeEEEEECCCcCCC-------C----HHHHHHHHHHHH
Confidence 477888887 999999 589999853211 112334668888888743 2 334666777776
Q ss_pred HHHH
Q 033757 82 TEQY 85 (112)
Q Consensus 82 ~~~Y 85 (112)
.+.+
T Consensus 207 ~~~~ 210 (214)
T PLN02901 207 AESL 210 (214)
T ss_pred HHHh
Confidence 6654
No 10
>PF00658 PABP: Poly-adenylate binding protein, unique domain; InterPro: IPR002004 The polyadenylate-binding protein (PABP) has a conserved C-terminal domain (PABC), which is also found in the hyperplastic discs protein (HYD) family of ubiquitin ligases that contain HECT domains (IPR000569 from INTERPRO) []. PABP recognises the 3' mRNA poly(A) tail and plays an essential role in eukaryotic translation initiation and mRNA stabilisation/degradation. PABC domains of PABP are peptide-binding domains that mediate PABP homo-oligomerisation and protein-protein interactions. In mammals, the PABC domain of PABP functions to recruit several different translation factors to the mRNA poly(A) tail [].; GO: 0003723 RNA binding; PDB: 3KUR_E 1JH4_A 2RQH_B 3KUI_A 3KUS_A 3KUJ_A 3KTR_A 2X04_A 3PTH_A 1JGN_A ....
Probab=66.76 E-value=9.4 Score=25.60 Aligned_cols=32 Identities=31% Similarity=0.528 Sum_probs=27.3
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 033757 63 SKNPEEAKEVYTQAFYNSVTEQYNVLKSAIHG 94 (112)
Q Consensus 63 ~~~~eear~a~s~~ly~~V~~~Y~~l~~AI~~ 94 (112)
.-++++.|+.+.++||..|...|..+-.=|+|
T Consensus 10 ~~~~~~qk~~LGe~Ly~~V~~~~p~~A~KITG 41 (72)
T PF00658_consen 10 SASPEQQKQILGERLYPLVQAIYPELAGKITG 41 (72)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred cCCHHHHHHHHhccccHHHHHhCcchhHHHHH
Confidence 44677899999999999999999987777776
No 11
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=63.49 E-value=5.8 Score=31.36 Aligned_cols=40 Identities=23% Similarity=0.412 Sum_probs=35.9
Q ss_pred CCCcceeeehhhhccCCCCChhhhhhhcceeeeeeeccee
Q 033757 9 GIPGHIYPLALLCHDIMPPPPQVEREVGEKRVISFHGAGL 48 (112)
Q Consensus 9 ~~ptHfyPlAL~tydImPPP~~vekeIGE~R~i~f~gvgl 48 (112)
..|||++||--.-.-++.-+-..|..+-=-|...+.|+|+
T Consensus 122 ~~PGHvfPL~a~~gGvl~R~GhTEaavdL~~lAGl~p~~v 161 (199)
T TIGR00506 122 RRPGHVFPLRAADGGVLTRGGHTEASVDLAELAGLKPAGV 161 (199)
T ss_pred CCCCccceEEeccCCCcCCCChHHHHHHHHHHcCCCceEE
Confidence 5899999998887789999999999998889999999886
No 12
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=53.26 E-value=4.5 Score=31.31 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=22.2
Q ss_pred hhhccCCCCChhhhhhhcceeeeeeec
Q 033757 19 LLCHDIMPPPPQVEREVGEKRVISFHG 45 (112)
Q Consensus 19 L~tydImPPP~~vekeIGE~R~i~f~g 45 (112)
+++||+.|-|+-||+.+---|-++=-+
T Consensus 75 l~~yDlVP~pkvIEaaLRA~RRvNDfa 101 (149)
T KOG4077|consen 75 LFDYDLVPSPKVIEAALRACRRVNDFA 101 (149)
T ss_pred hhccccCCChHHHHHHHHHHHHhccHH
Confidence 679999999999999998777666333
No 13
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=50.58 E-value=8.3 Score=22.49 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033757 72 VYTQAFYNSVTEQYNVLK 89 (112)
Q Consensus 72 a~s~~ly~~V~~~Y~~l~ 89 (112)
..+...|..|++.|++|+
T Consensus 37 ~~~~~~~~~l~~Ay~~L~ 54 (55)
T cd06257 37 PEAEEKFKEINEAYEVLS 54 (55)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 456788999999999885
No 14
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=49.79 E-value=11 Score=22.45 Aligned_cols=20 Identities=20% Similarity=0.424 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033757 71 EVYTQAFYNSVTEQYNVLKS 90 (112)
Q Consensus 71 ~a~s~~ly~~V~~~Y~~l~~ 90 (112)
...++..|..|++.|++|+.
T Consensus 38 ~~~~~~~~~~l~~Ay~~L~~ 57 (60)
T smart00271 38 KEEAEEKFKEINEAYEVLSD 57 (60)
T ss_pred hHHHHHHHHHHHHHHHHHcC
Confidence 34567889999999999864
No 15
>PRK14348 lipoate-protein ligase B; Provisional
Probab=48.05 E-value=29 Score=27.82 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=18.5
Q ss_pred hhcceeeeeeecceeeeccccc
Q 033757 34 EVGEKRVISFHGAGLSVAPEIS 55 (112)
Q Consensus 34 eIGE~R~i~f~gvgls~g~EI~ 55 (112)
.|.=+|.|++||+.||+..++.
T Consensus 154 Gv~v~r~vT~HG~ALNv~~dL~ 175 (221)
T PRK14348 154 GVRSSHYVTMHGLALNVNTDLR 175 (221)
T ss_pred eEEeccceeecceEEEecCChH
Confidence 4556799999999999998764
No 16
>cd07989 LPLAT_AGPAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.
Probab=46.58 E-value=19 Score=25.33 Aligned_cols=47 Identities=23% Similarity=0.297 Sum_probs=32.6
Q ss_pred hhhhhcCCCcceeeehhhhccCCCCChhhhhhhcceeeeeeecceeeeccccchhhh
Q 033757 3 RLAEHSGIPGHIYPLALLCHDIMPPPPQVEREVGEKRVISFHGAGLSVAPEISFADI 59 (112)
Q Consensus 3 ~L~~~s~~ptHfyPlAL~tydImPPP~~vekeIGE~R~i~f~gvgls~g~EI~~~~~ 59 (112)
+||.+++.| ++|+++...+.-.+.. .+-..+..+-+.++++|..++.
T Consensus 123 ~lA~~~~~~--Vvpv~~~~~~~~~~~~--------~~~~~~~~~~i~~~~pi~~~~~ 169 (184)
T cd07989 123 RLAKEAGVP--IVPVAISGTWGSLPKG--------KKLPRPGRVTVRIGEPIPPEGL 169 (184)
T ss_pred HHHHHcCCC--EEeEEEeChhhhCcCC--------CCcCCCCcEEEEEcCCcChhhh
Confidence 466677766 7788877766554432 4445566788899999998875
No 17
>cd07992 LPLAT_AAK14816-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown AAK14816-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized glycerol-3-phosphate acyltransferases such as the Plasmodium falciparum locus AAK14816 putative acyltransferase, and similar proteins.
Probab=46.52 E-value=29 Score=25.69 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=20.6
Q ss_pred ecceeeeccccchhhhhhccCChHHHHHHHHHHHHHHHHHH
Q 033757 44 HGAGLSVAPEISFADIITASKNPEEAKEVYTQAFYNSVTEQ 84 (112)
Q Consensus 44 ~gvgls~g~EI~~~~~~~~~~~~eear~a~s~~ly~~V~~~ 84 (112)
..+-+.+|+-|++++.....++. ...+++.|+|.++
T Consensus 166 ~~i~i~~g~pi~~~~~~~~~~~~-----~~~~~~~~~~~~~ 201 (203)
T cd07992 166 SRVLVEFGKPISVSAFEEAEASR-----DVEKKLINQLEAE 201 (203)
T ss_pred CeEEEEECCCcccccccccccch-----hHHHHHHHHHHHh
Confidence 45778889999888754222222 1234555555543
No 18
>PF11269 DUF3069: Protein of unknown function (DUF3069); InterPro: IPR021422 This family of proteins with unknown function appear to be restricted to Gammaproteobacteria. ; PDB: 2PV4_A.
Probab=46.24 E-value=21 Score=26.84 Aligned_cols=49 Identities=20% Similarity=0.333 Sum_probs=30.1
Q ss_pred ceeeeccccchhhhhhc--cCChHHHH-HHHHHHHHHHHHHHHHHHHHhhcC
Q 033757 46 AGLSVAPEISFADIITA--SKNPEEAK-EVYTQAFYNSVTEQYNVLKSAIHG 94 (112)
Q Consensus 46 vgls~g~EI~~~~~~~~--~~~~eear-~a~s~~ly~~V~~~Y~~l~~AI~~ 94 (112)
.|||+-.|.+-.++... .+..+|=+ ..+.+-+.+.|.+.-+.||+|=++
T Consensus 58 ~~l~~~ae~~~~~~~e~~~~~~~~EY~~~lld~vl~~~lKd~vKqLKKAR~d 109 (121)
T PF11269_consen 58 AGLSRMAEFDISELPEDMEEEEEQEYRAQLLDRVLHNCLKDMVKQLKKARRD 109 (121)
T ss_dssp HHHHHH----HHHHHHTTTTS-HHHHHH-HHHHHHHTHHHHHHHHHHHHTT-
T ss_pred HcchHHhhchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 36777777665666433 22333333 478888999999999999999765
No 19
>PRK14345 lipoate-protein ligase B; Provisional
Probab=45.70 E-value=30 Score=27.90 Aligned_cols=26 Identities=23% Similarity=0.496 Sum_probs=20.7
Q ss_pred hhcceeeeeeecceeeecccc-chhhh
Q 033757 34 EVGEKRVISFHGAGLSVAPEI-SFADI 59 (112)
Q Consensus 34 eIGE~R~i~f~gvgls~g~EI-~~~~~ 59 (112)
.|.=+|.|++||+.||+..++ .|+.|
T Consensus 151 Gv~v~r~vT~HG~ALNV~~DL~~F~~I 177 (234)
T PRK14345 151 GIRVSRGVTMHGFALNCDNDLAAFDAI 177 (234)
T ss_pred EeeeccceeecceEEEeCCChHHhceE
Confidence 555689999999999999987 44544
No 20
>PF05114 DUF692: Protein of unknown function (DUF692); InterPro: IPR007801 The proteins in this entry are functionally uncharacterised.; PDB: 3BWW_A.
Probab=42.52 E-value=8.6 Score=31.57 Aligned_cols=27 Identities=30% Similarity=0.543 Sum_probs=15.8
Q ss_pred CChhhhhhhcceeeeeeecceeeeccc
Q 033757 27 PPPQVEREVGEKRVISFHGAGLSVAPE 53 (112)
Q Consensus 27 PP~~vekeIGE~R~i~f~gvgls~g~E 53 (112)
++...=..|.|+.-+.+||||+|+|..
T Consensus 42 ~~~~~L~~i~~~~Pv~~HGv~lslG~~ 68 (274)
T PF05114_consen 42 RPREQLEAIRERYPVSLHGVGLSLGSA 68 (274)
T ss_dssp HHHHHHHHHTTTS-EEEB-S---TT-S
T ss_pred chHHHHHHHHhCCCEEEeccccccCCC
Confidence 344444578999999999999999754
No 21
>PRK14346 lipoate-protein ligase B; Provisional
Probab=41.11 E-value=40 Score=27.38 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=18.1
Q ss_pred hhcceeeeeeecceeeeccccc
Q 033757 34 EVGEKRVISFHGAGLSVAPEIS 55 (112)
Q Consensus 34 eIGE~R~i~f~gvgls~g~EI~ 55 (112)
.|.=+|.|+|||+.||+..++.
T Consensus 165 Gv~v~r~vT~HG~ALNv~~DL~ 186 (230)
T PRK14346 165 GIKVSRHCTYHGVALNVAMDLE 186 (230)
T ss_pred eeEEecceeecceeEEcCCChh
Confidence 3446799999999999998764
No 22
>PF03509 Connexin50: Gap junction alpha-8 protein (Cx50); InterPro: IPR002266 The connexins are a family of integral membrane proteins that oligomerise to form intercellular channels that are clustered at gap junctions. These channels are specialised sites of cell-cell contact that allow the passage of ions, intracellular metabolites and messenger molecules (with molecular weight less than 1-2kDa) from the cytoplasm of one cell to its opposing neighbours. They are found in almost all vertebrate cell types, and somewhat similar proteins have been cloned from plant species. Invertebrates utilise a different family of molecules, innexins, that share a similar predicted secondary structure to the vertebrate connexins, but have no sequence identity to them []. Vertebrate gap junction channels are thought to participate in diverse biological functions. For instance, in the heart they permit the rapid cell-cell transfer of action potentials, ensuring coordinated contraction of the cardiomyocytes. They are also responsible for neurotransmission at specialised 'electrical' synapses. In non-excitable tissues, such as the liver, they may allow metabolic cooperation between cells. In the brain, glial cells are extensively-coupled by gap junctions; this allows waves of intracellular Ca2+ to propagate through nervous tissue, and may contribute to their ability to spatially-buffer local changes in extracellular K+ concentration []. The connexin protein family is encoded by at least 13 genes in rodents, with many homologues cloned from other species. They show overlapping tissue expression patterns, most tissues expressing more than one connexin type. Their conductances, permeability to different molecules, phosphorylation and voltage-dependence of their gating, have been found to vary. Possible communication diversity is increased further by the fact that gap junctions may be formed by the association of different connexin isoforms from apposing cells. However, in vitro studies have shown that not all possible combinations of connexins produce active channels [, ]. Hydropathy analysis predicts that all cloned connexins share a common transmembrane (TM) topology. Each connexin is thought to contain 4 TM domains, with two extracellular and three cytoplasmic regions. This model has been validated for several of the family members by in vitro biochemical analysis. Both N- and C-termini are thought to face the cytoplasm, and the third TM domain has an amphipathic character, suggesting that it contributes to the lining of the formed-channel. Amino acid sequence identity between the isoforms is ~50-80%, with the TM domains being well conserved. Both extracellular loops contain characteristically conserved cysteine residues, which likely form intramolecular disulphide bonds. By contrast, the single putative intracellular loop (between TM domains 2 and 3) and the cytoplasmic C terminus are highly variable among the family members. Six connexins are thought to associate to form a hemi-channel, or connexon. Two connexons then interact (likely via the extracellular loops of their connexins) to form the complete gap junction channel. NH2-*** *** *************-COOH ** ** ** ** ** ** ** ** Cytoplasmic ---**----**-----**----**---------------- ** ** ** ** Membrane ** ** ** ** ---**----**-----**----**---------------- ** ** ** ** Extracellular ** ** ** ** ** ** Two sets of nomenclature have been used to identify the connexins. The first, and most commonly used, classifies the connexin molecules according to molecular weight, such as connexin43 (abbreviated to Cx43), indicating a connexin of molecular weight close to 43kDa. However, studies have revealed cases where clear functional homologues exist across species that have quite different molecular masses; therefore, an alternative nomenclature was proposed based on evolutionary considerations, which divides the family into two major subclasses, alpha and beta, each with a number of members []. Due to their ubiquity and overlapping tissue distributions, it has proved difficult to elucidate the functions of individual connexin isoforms. To circumvent this problem, particular connexin-encoding genes have been subjected to targeted-disruption in mice, and the phenotype of the resulting animals investigated. Around half the connexin isoforms have been investigated in this manner []. Further insight into the functional roles of connexins has come from the discovery that a number of human diseases are caused by mutations in connexin genes. For instance, mutations in Cx32 give rise to a form of inherited peripheral neuropathy called X-linked dominant Charcot-Marie-Tooth disease []. Similarly, mutations in Cx26 are responsible for both autosomal recessive and dominant forms of nonsyndromic deafness, a disorder characterised by hearing loss, with no apparent effects on other organ systems. Gap junction alpha-8 protein (also called connexin50, Cx50, or lens fibre protein MP70) is a connexin of ~431 amino acid residues. The chicken isoform is shorter (399 residues) and is hence known as Cx45.6. Cx50 and Cx46 are the two gap junction proteins normally found in lens fibre cells of the eye. Evidence from both genetically-engineered mice, and from the identification of mutations in the human Cx50-encoding gene, highlight the importance of this connexin in maintaining lens transparency. Deletion of mice Cx50 produces a viable phenotype, but these animals start to develop cataracts (of the zonular pulverant type) at about one week old. They also have abnormally small eyes and lenses. Similarly, mutations in the human gene encoding Cx50 have been associated with the occurrence of congenital cataracts. Affected individuals develop cataracts (with zonular pulverent opacities), and analysis shows they have a single point mutation in the Cx50 coding region, resulting in a non-conservative substitution in the second putative TM domain of a serine residue for a proline.; GO: 0007154 cell communication, 0005922 connexon complex
Probab=38.79 E-value=12 Score=25.57 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=15.5
Q ss_pred hhhhcCCCcceeeehhhhccCCC
Q 033757 4 LAEHSGIPGHIYPLALLCHDIMP 26 (112)
Q Consensus 4 L~~~s~~ptHfyPlAL~tydImP 26 (112)
|.+.-+.-.|||||+=.--+--|
T Consensus 9 lLEEEK~vsh~~PLtEVG~E~~~ 31 (66)
T PF03509_consen 9 LLEEEKPVSHYFPLTEVGMEASP 31 (66)
T ss_pred hhhhhcchheecchhhhccccCC
Confidence 44555688999999866544433
No 23
>PRK05409 hypothetical protein; Provisional
Probab=38.65 E-value=16 Score=30.22 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=24.4
Q ss_pred CChhhhhhhcceeeeeeecceeeeccc--cchh
Q 033757 27 PPPQVEREVGEKRVISFHGAGLSVAPE--ISFA 57 (112)
Q Consensus 27 PP~~vekeIGE~R~i~f~gvgls~g~E--I~~~ 57 (112)
++...-..|.|+--+.+||||+|+|.- +|.+
T Consensus 44 ~~~~~L~~i~e~~Pv~~HGv~LslGs~~~ld~~ 76 (281)
T PRK05409 44 PPLAQLDAIRERYPLSLHGVSLSLGGAAPLDKD 76 (281)
T ss_pred chHHHHHHHHhcCCEEEcccccccCCCCCCCHH
Confidence 455566689999999999999999753 5543
No 24
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=36.65 E-value=15 Score=29.55 Aligned_cols=46 Identities=22% Similarity=0.410 Sum_probs=37.7
Q ss_pred CCCcceeeehhhhccCCCCChhhhhhhcceeeeeeecceeeeccccc
Q 033757 9 GIPGHIYPLALLCHDIMPPPPQVEREVGEKRVISFHGAGLSVAPEIS 55 (112)
Q Consensus 9 ~~ptHfyPlAL~tydImPPP~~vekeIGE~R~i~f~gvgls~g~EI~ 55 (112)
..|||++||--.---++=-+-..|..+-=-|...|.|+|+ +||-++
T Consensus 121 ~~PGHVfpL~A~~ggVl~R~GHTEasVdLarlAGl~Pa~V-icEi~~ 166 (203)
T COG0108 121 RRPGHVFPLRAKDGGVLERRGHTEAAVDLARLAGLKPAGV-ICEIMN 166 (203)
T ss_pred CCCCCeeeeeeccCCeeccCChHHHHHHHHHHcCCCCcEE-EEEEeC
Confidence 5799999998776667777888888888889999999998 455555
No 25
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=36.49 E-value=22 Score=17.00 Aligned_cols=12 Identities=25% Similarity=0.601 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHH
Q 033757 78 YNSVTEQYNVLK 89 (112)
Q Consensus 78 y~~V~~~Y~~l~ 89 (112)
|+.|.+.|+.|+
T Consensus 3 ~~~V~~aY~~l~ 14 (14)
T PF07709_consen 3 FEKVKNAYEQLS 14 (14)
T ss_pred HHHHHHHHHhcC
Confidence 567888887663
No 26
>PF07431 DUF1512: Protein of unknown function (DUF1512); InterPro: IPR009995 This family consists of several archaeal proteins of around 370 residues in length. The function of this family is unknown.
Probab=36.43 E-value=81 Score=27.45 Aligned_cols=61 Identities=25% Similarity=0.325 Sum_probs=46.7
Q ss_pred cceeeeeeecceeeec---cc-cchhhhhhcc----------CChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 033757 36 GEKRVISFHGAGLSVA---PE-ISFADIITAS----------KNPEEAKEVYTQAFYNSVTEQYNVLKSAIHGQQ 96 (112)
Q Consensus 36 GE~R~i~f~gvgls~g---~E-I~~~~~~~~~----------~~~eear~a~s~~ly~~V~~~Y~~l~~AI~~~~ 96 (112)
||+.---=-|+|+++| +| +..++++..+ .+.+||=-..++.+|+.|.+-++.++..|....
T Consensus 262 GE~TG~vAEGvGvAiGg~G~EK~~IE~~Atky~IPl~AiiIKms~~EAit~M~keI~~a~~~a~~~v~~iI~e~~ 336 (355)
T PF07431_consen 262 GEETGSVAEGVGVAIGGPGVEKFNIERIATKYGIPLYAIIIKMSMEEAITPMTKEIYEAVDKAVERVKEIIRENT 336 (355)
T ss_pred CccccchhhccccccCCCChhhhhHHHHHHhcCCCceeeeeecCHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4544444458888875 34 7777775433 378899889999999999999999999998754
No 27
>TIGR00214 lipB lipoate-protein ligase B. Involved in lipoate biosynthesis as the main determinant of the lipoyl-protein ligase activity required for lipoylation of enzymes such as alpha-ketoacid dehydrogenases. Involved in activation and re-activation (following denaturation) of lipoyl-protein ligases (calcium ion-dependant process).
Probab=33.51 E-value=23 Score=27.56 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=18.7
Q ss_pred hhcceeeeeeecceeeeccccch
Q 033757 34 EVGEKRVISFHGAGLSVAPEISF 56 (112)
Q Consensus 34 eIGE~R~i~f~gvgls~g~EI~~ 56 (112)
.+.=+|.|++||+.||+.+++..
T Consensus 120 Gv~v~r~vt~HG~ALNv~~dL~~ 142 (184)
T TIGR00214 120 GIRVRRGCTFHGLALNINMDLSP 142 (184)
T ss_pred EEEEeccEeecceEEEcCCCchH
Confidence 34467999999999999998553
No 28
>COG3081 Nucleoid-associated protein [General function prediction only]
Probab=33.51 E-value=45 Score=28.75 Aligned_cols=31 Identities=16% Similarity=0.306 Sum_probs=23.4
Q ss_pred hhhhhhccCChHHHHHHHHHHHHHHHHHHHH
Q 033757 56 FADIITASKNPEEAKEVYTQAFYNSVTEQYN 86 (112)
Q Consensus 56 ~~~~~~~~~~~eear~a~s~~ly~~V~~~Y~ 86 (112)
|+++++..+-.||.++++.+.+|+++++|-+
T Consensus 205 vsDfca~a~l~keq~q~~kkqv~eYc~~Q~~ 235 (335)
T COG3081 205 VSDFCAEADLDKEERQAVKKQVYEYCNEQLQ 235 (335)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 3455555666667778899999999999865
No 29
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=33.47 E-value=19 Score=28.93 Aligned_cols=46 Identities=22% Similarity=0.434 Sum_probs=38.0
Q ss_pred CCCcceeeehhhhccCCCCChhhhhhhcceeeeeeecceeeeccccc
Q 033757 9 GIPGHIYPLALLCHDIMPPPPQVEREVGEKRVISFHGAGLSVAPEIS 55 (112)
Q Consensus 9 ~~ptHfyPlAL~tydImPPP~~vekeIGE~R~i~f~gvgls~g~EI~ 55 (112)
-.|||++||--.---++--+-..|..+-=-|...+.|+|+ ++|-++
T Consensus 132 ~~PGHvfPL~a~~gGvl~R~GHTEaavdLa~lAGl~p~~v-icEil~ 177 (214)
T PRK01792 132 HRPGHVFPLRAANGGVLTRRGHTEAAVDLARLAGYKEAGV-ICEITN 177 (214)
T ss_pred CCCCccceEEeccCCCccCCChHHHHHHHHHHcCCCceEE-EEEEec
Confidence 4899999998887778999999999998889999999885 344344
No 30
>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.
Probab=32.49 E-value=36 Score=25.51 Aligned_cols=62 Identities=19% Similarity=0.193 Sum_probs=33.8
Q ss_pred hhhhhcCCCcceeeehhhhcc---------CCCCChhhhhhhcceeeeeeecceeeeccccchhhhhhccCChHH
Q 033757 3 RLAEHSGIPGHIYPLALLCHD---------IMPPPPQVEREVGEKRVISFHGAGLSVAPEISFADIITASKNPEE 68 (112)
Q Consensus 3 ~L~~~s~~ptHfyPlAL~tyd---------ImPPP~~vekeIGE~R~i~f~gvgls~g~EI~~~~~~~~~~~~ee 68 (112)
+||.++|+| +.|+++...+ ++|..... .-..+......+.|.|.|++.|+.+++.. .+|.++
T Consensus 130 ~lA~~~~~p--IvPv~i~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~v~~g~pI~~~~~~~-~~~~~~ 200 (210)
T cd07986 130 RLARKAKAP--VVPVYFSGRNSRLFYLAGLIHPTLRTL-LLPRELLNKRGKTIRIRVGRPIPPEELAR-FEDAEE 200 (210)
T ss_pred HHHHHHCCC--EEEEEEeeeCcHHHHHHHccCHHHHHH-HHHHHHHHhCCCEEEEEeCCcCCHHHHhc-CCCHHH
Confidence 467777764 8888885432 23321100 00111111234668899999999988753 444433
No 31
>KOG2848 consensus 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid transport and metabolism]
Probab=29.62 E-value=1.2e+02 Score=25.67 Aligned_cols=69 Identities=19% Similarity=0.320 Sum_probs=41.9
Q ss_pred hhhhcCCCcceeeehhhhc-cCCCCChhhhhhhcceeeeeeecceeeeccccchhhhhhccCChHHHHHHHHHHHHHHHH
Q 033757 4 LAEHSGIPGHIYPLALLCH-DIMPPPPQVEREVGEKRVISFHGAGLSVAPEISFADIITASKNPEEAKEVYTQAFYNSVT 82 (112)
Q Consensus 4 L~~~s~~ptHfyPlAL~ty-dImPPP~~vekeIGE~R~i~f~gvgls~g~EI~~~~~~~~~~~~eear~a~s~~ly~~V~ 82 (112)
||.++++| +.|..+.+| ++++||.++=.. |+-++.- =+.|+-+.++.. | =.++++..-++..
T Consensus 190 lAvqaqVP--IVPvv~ssy~~f~~~~~k~f~s-G~v~V~v--------L~pI~TeglT~d--d----v~~L~~~~R~~M~ 252 (276)
T KOG2848|consen 190 LAVQAQVP--IVPVVFSSYGDFYSTKEKVFNS-GNVIVRV--------LPPIPTEGLTKD--D----VDVLSDECRSAML 252 (276)
T ss_pred eehhcCCC--EEEEEEecccccccCccceeec-ceEEEEE--------cCCCCccCCCcc--c----HHHHHHHHHHHHH
Confidence 67788887 889999887 788998777666 7766544 444443322211 0 0134455555556
Q ss_pred HHHHHHH
Q 033757 83 EQYNVLK 89 (112)
Q Consensus 83 ~~Y~~l~ 89 (112)
+-|+++.
T Consensus 253 ~~~~ei~ 259 (276)
T KOG2848|consen 253 ETFKEIS 259 (276)
T ss_pred HHHHHhc
Confidence 6666653
No 32
>PHA03002 Hypothetical protein; Provisional
Probab=29.43 E-value=1.3e+02 Score=28.47 Aligned_cols=58 Identities=19% Similarity=0.391 Sum_probs=42.8
Q ss_pred CChhhhhhhcceeeeeeecceeeeccccchhhhhhccCChHHHHHHHHHH---HHHHHHHHH-HHHHHhhcCCC
Q 033757 27 PPPQVEREVGEKRVISFHGAGLSVAPEISFADIITASKNPEEAKEVYTQA---FYNSVTEQY-NVLKSAIHGQQ 96 (112)
Q Consensus 27 PP~~vekeIGE~R~i~f~gvgls~g~EI~~~~~~~~~~~~eear~a~s~~---ly~~V~~~Y-~~l~~AI~~~~ 96 (112)
|++++.++-|++-+..|+ . .-++|++.++ +++. +|-+. +|++-.+++ +.++..|..++
T Consensus 258 p~~~Li~~YGik~~amFs-~----~~~~d~~~~t-----d~d~--~Fie~nI~~Yd~~~r~Fa~~FR~~i~~~~ 319 (679)
T PHA03002 258 SKEELIKEYGIKSVAMFS-L----NYETDLDTLT-----DDDK--IFIEVNISYYDSRCRQFANEFRDKIMIKE 319 (679)
T ss_pred CHHHHHHHhCceEEEEec-c----ccccchhhcC-----ccch--hhhhhhhhHhhHHHHHHHHHHHHHHHhcc
Confidence 678899999999998998 3 3356766553 2222 46666 999999999 88888777755
No 33
>smart00517 PolyA C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein. Involved in homodimerisation (either directly or indirectly)
Probab=29.06 E-value=31 Score=23.02 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=24.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 033757 65 NPEEAKEVYTQAFYNSVTEQYNVLKSAIHG 94 (112)
Q Consensus 65 ~~eear~a~s~~ly~~V~~~Y~~l~~AI~~ 94 (112)
++++.|+.+.++||..|.+.+-.+-.-|+|
T Consensus 1 ~p~~qkq~LGE~Lyp~V~~~~p~~A~KITG 30 (64)
T smart00517 1 PPQEQKQALGERLYPKVQALEPELAGKITG 30 (64)
T ss_pred CHHHHHHHHhHHHhHHHHhhCcccCCcCee
Confidence 356788999999999999988766666666
No 34
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=28.69 E-value=24 Score=26.06 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=16.7
Q ss_pred hhhccCCCCChhhhhhhcceeeee
Q 033757 19 LLCHDIMPPPPQVEREVGEKRVIS 42 (112)
Q Consensus 19 L~tydImPPP~~vekeIGE~R~i~ 42 (112)
|+.||+.|.|.-|+..+---|-++
T Consensus 36 l~~~DlVP~P~ii~aALrAcRRvN 59 (108)
T PF02284_consen 36 LFGYDLVPEPKIIEAALRACRRVN 59 (108)
T ss_dssp HTTSSB---HHHHHHHHHHHHHTT
T ss_pred HhccccCCChHHHHHHHHHHHHhh
Confidence 578999999999999886655554
No 35
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=28.52 E-value=32 Score=25.22 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=21.8
Q ss_pred hhhccCCCCChhhhhhhcceeeeeeecc
Q 033757 19 LLCHDIMPPPPQVEREVGEKRVISFHGA 46 (112)
Q Consensus 19 L~tydImPPP~~vekeIGE~R~i~f~gv 46 (112)
|+.||+.|.|+-|+..+---|-+|=-+.
T Consensus 33 l~~~DlVP~P~ii~aaLrAcRRvND~al 60 (103)
T cd00923 33 LFGYDLVPEPKVIEAALRACRRVNDFAL 60 (103)
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHH
Confidence 5789999999999998877666654333
No 36
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=28.26 E-value=31 Score=25.75 Aligned_cols=23 Identities=43% Similarity=0.719 Sum_probs=18.4
Q ss_pred eeeeeeecceeeecccc-chhhhh
Q 033757 38 KRVISFHGAGLSVAPEI-SFADII 60 (112)
Q Consensus 38 ~R~i~f~gvgls~g~EI-~~~~~~ 60 (112)
+|++-|+|.|||...-| +|.+..
T Consensus 1 k~iv~~tGAGiS~~sGiP~fr~~~ 24 (222)
T cd00296 1 KRVVVFTGAGISTESGIPDFRGLG 24 (222)
T ss_pred CCEEEEeCCccccccCCCCccccc
Confidence 57899999999998776 666554
No 37
>PRK14347 lipoate-protein ligase B; Provisional
Probab=28.16 E-value=33 Score=27.37 Aligned_cols=22 Identities=18% Similarity=0.623 Sum_probs=18.4
Q ss_pred hhcceeeeeeecceeeeccccc
Q 033757 34 EVGEKRVISFHGAGLSVAPEIS 55 (112)
Q Consensus 34 eIGE~R~i~f~gvgls~g~EI~ 55 (112)
.|.=+|.+++||+.||+.+++.
T Consensus 145 Gv~v~r~vT~HG~AlNv~~dL~ 166 (209)
T PRK14347 145 GVRVRKWVTYHGVAINISTDLS 166 (209)
T ss_pred eEEEecceeecceEEEeCCCcc
Confidence 4456799999999999998864
No 38
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=27.82 E-value=56 Score=22.02 Aligned_cols=37 Identities=19% Similarity=0.325 Sum_probs=28.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCcccccCC
Q 033757 65 NPEEAKEVYTQAFYNSVTEQYNVLKSAIHGQQGLKASIPSVSLSQP 110 (112)
Q Consensus 65 ~~eear~a~s~~ly~~V~~~Y~~l~~AI~~~~g~~as~~~~slsqp 110 (112)
++...|+-+|.+|-|.+++. .|.| +..+...|.||||
T Consensus 14 ~~~~RR~GIAt~Lld~ar~~------~iyG---~~l~~~~iAFSqP 50 (70)
T PF13880_consen 14 SPSHRRKGIATRLLDAAREN------FIYG---CVLPKNEIAFSQP 50 (70)
T ss_pred ChhhhhhhHHHHHHHHHHHh------ccCc---eEechhheEecCC
Confidence 55667788999999988864 4544 5577888999999
No 39
>PRK14343 lipoate-protein ligase B; Provisional
Probab=26.84 E-value=98 Score=25.21 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=18.2
Q ss_pred hhcceeeeeeecceeeeccccc
Q 033757 34 EVGEKRVISFHGAGLSVAPEIS 55 (112)
Q Consensus 34 eIGE~R~i~f~gvgls~g~EI~ 55 (112)
.|.=+|.|++||+.||+..++.
T Consensus 155 Gv~v~r~vT~HG~ALNv~~DL~ 176 (235)
T PRK14343 155 GLKIRNGCSYHGLSLNVKMDLR 176 (235)
T ss_pred eeeeecceeecccEEEeCCCch
Confidence 4446799999999999998754
No 40
>PF05794 Tcp11: T-complex protein 11; InterPro: IPR008862 This family consists of several eukaryotic T-complex protein 11 (Tcp11) related sequences. Tcp11 is only expressed in fertile adult mammalian testes and is thought to be important in sperm function and fertility. The family also contains the Saccharomyces cerevisiae Sok1 protein which is known to suppress cyclic AMP-dependent protein kinase mutants [].
Probab=26.13 E-value=80 Score=26.28 Aligned_cols=38 Identities=21% Similarity=0.409 Sum_probs=23.7
Q ss_pred eeccccchhhhhhccCChHH-HHHHHHHHHHHHHHHHHH
Q 033757 49 SVAPEISFADIITASKNPEE-AKEVYTQAFYNSVTEQYN 86 (112)
Q Consensus 49 s~g~EI~~~~~~~~~~~~ee-ar~a~s~~ly~~V~~~Y~ 86 (112)
+|.+++.|+...-..++.+. .|+...++.|+.|.++-+
T Consensus 7 ~~d~~~~~~~~~~~~~~~~~~vk~~~~~afWd~l~~el~ 45 (441)
T PF05794_consen 7 AFDPDFQFRPNDPPEDSLEGRVKETMHKAFWDALREELE 45 (441)
T ss_pred hcCcccccCCCCCCccchHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555533222333444 668899999999988744
No 41
>PRK14341 lipoate-protein ligase B; Provisional
Probab=25.39 E-value=37 Score=27.07 Aligned_cols=23 Identities=39% Similarity=0.730 Sum_probs=18.7
Q ss_pred hhcceeeeeeecceeeeccccch
Q 033757 34 EVGEKRVISFHGAGLSVAPEISF 56 (112)
Q Consensus 34 eIGE~R~i~f~gvgls~g~EI~~ 56 (112)
.+.=+|.|++||+.||+..++..
T Consensus 148 Gv~v~r~vT~HG~ALNv~~dL~~ 170 (213)
T PRK14341 148 GVRLRRWVSFHGISINVEPDLSH 170 (213)
T ss_pred eeeEecceeccceEEEecCChhh
Confidence 33357999999999999998754
No 42
>PRK14349 lipoate-protein ligase B; Provisional
Probab=25.08 E-value=39 Score=27.29 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=18.4
Q ss_pred hhcceeeeeeecceeeeccccc
Q 033757 34 EVGEKRVISFHGAGLSVAPEIS 55 (112)
Q Consensus 34 eIGE~R~i~f~gvgls~g~EI~ 55 (112)
.|.=+|.++|||+.||+.+++.
T Consensus 141 Gv~v~r~vT~HG~ALNv~~DL~ 162 (220)
T PRK14349 141 GVKVRNGYAYHGLALNIDMDLS 162 (220)
T ss_pred eeEEecceeecceeEEecCCch
Confidence 4556799999999999998854
No 43
>PF12944 DUF3840: Protein of unknown function (DUF3840)
Probab=23.70 E-value=37 Score=24.78 Aligned_cols=14 Identities=29% Similarity=0.888 Sum_probs=11.5
Q ss_pred hhhccCCCCChhhh
Q 033757 19 LLCHDIMPPPPQVE 32 (112)
Q Consensus 19 L~tydImPPP~~ve 32 (112)
=++-+++|||.+|.
T Consensus 85 elsnevlppp~k~k 98 (104)
T PF12944_consen 85 ELSNEVLPPPRKMK 98 (104)
T ss_pred HhccccCCCchhhc
Confidence 36789999999875
No 44
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=23.17 E-value=1.2e+02 Score=23.76 Aligned_cols=32 Identities=22% Similarity=0.410 Sum_probs=22.1
Q ss_pred cccchhhhh-------hccCChHHHHHHHHHHHHHHHHHH
Q 033757 52 PEISFADII-------TASKNPEEAKEVYTQAFYNSVTEQ 84 (112)
Q Consensus 52 ~EI~~~~~~-------~~~~~~eear~a~s~~ly~~V~~~ 84 (112)
++=+||||. +.+.+++++++.. |++||.|-.+
T Consensus 2 ~~ASfeEIq~Arn~ll~~y~gd~~~~~~I-EaAYD~ILM~ 40 (194)
T PF11833_consen 2 EDASFEEIQAARNRLLAQYAGDEKSREAI-EAAYDAILME 40 (194)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHH
Confidence 456778874 3566777777644 8999988543
No 45
>KOG1391 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism]
Probab=23.08 E-value=47 Score=28.84 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 033757 73 YTQAFYNSVTEQYNVLKSAIH 93 (112)
Q Consensus 73 ~s~~ly~~V~~~Y~~l~~AI~ 93 (112)
+-+.||.+++++|-.|--|.+
T Consensus 143 lED~LW~sLtD~y~kLpMa~T 163 (396)
T KOG1391|consen 143 LEDSLWVSLTDQYVKLPMAMT 163 (396)
T ss_pred hhhhHhhhccchhhhcchhhh
Confidence 335799999999988866654
No 46
>PRK14342 lipoate-protein ligase B; Provisional
Probab=23.04 E-value=45 Score=26.61 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=19.2
Q ss_pred hhcceeeeeeecceeeeccccch
Q 033757 34 EVGEKRVISFHGAGLSVAPEISF 56 (112)
Q Consensus 34 eIGE~R~i~f~gvgls~g~EI~~ 56 (112)
.|.=+|.+++||+.||+.+++..
T Consensus 140 Gv~v~r~vT~HG~AlNv~~dL~~ 162 (213)
T PRK14342 140 GLRIRRGCSFHGLALNVNMDLSP 162 (213)
T ss_pred EEeEecceeecceeEecCCCchh
Confidence 45567999999999999998843
No 47
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=22.82 E-value=27 Score=27.47 Aligned_cols=46 Identities=17% Similarity=0.326 Sum_probs=35.2
Q ss_pred CCCcceeeehhhhccCCCCChhhhhhhcceeeeeeecceeeeccccc
Q 033757 9 GIPGHIYPLALLCHDIMPPPPQVEREVGEKRVISFHGAGLSVAPEIS 55 (112)
Q Consensus 9 ~~ptHfyPlAL~tydImPPP~~vekeIGE~R~i~f~gvgls~g~EI~ 55 (112)
..|||++||--.---++=.+-..|..+-=-|...+.|+++ +++-++
T Consensus 117 ~~PGHv~Pl~a~~gGvl~R~GhtEaavdLa~lAGl~p~av-i~eil~ 162 (194)
T PF00926_consen 117 VRPGHVFPLRARPGGVLERRGHTEAAVDLARLAGLSPVAV-ICEILD 162 (194)
T ss_dssp EEEEEEEEEEE-TTGGGTSSSHHHHHHHHHHHTTS-SBEE-EEEBBE
T ss_pred CCCCCCccceecCCcccCCCChHHHHHHHHHHhCCCCcEE-EEEEeC
Confidence 4799999997766667778888898888889999999887 444444
No 48
>PTZ00275 biotin-acetyl-CoA-carboxylase ligase; Provisional
Probab=22.78 E-value=2.9e+02 Score=22.38 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033757 70 KEVYTQAFYNSVTEQYNVLKS 90 (112)
Q Consensus 70 r~a~s~~ly~~V~~~Y~~l~~ 90 (112)
++.+...|.+.+...|..+++
T Consensus 199 ~~~ll~~ll~~l~~~~~~~~~ 219 (285)
T PTZ00275 199 VEQVTEKLIINLKAVINKLRK 219 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777777777754
No 49
>PF15368 BioT2: Spermatogenesis family BioT2
Probab=22.67 E-value=1.3e+02 Score=23.90 Aligned_cols=50 Identities=22% Similarity=0.374 Sum_probs=30.0
Q ss_pred hhcceeeeeee--cceeeeccccchhhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033757 34 EVGEKRVISFH--GAGLSVAPEISFADIITASKNPEEAKEVYTQAFYNSVTEQYNVLKSAI 92 (112)
Q Consensus 34 eIGE~R~i~f~--gvgls~g~EI~~~~~~~~~~~~eear~a~s~~ly~~V~~~Y~~l~~AI 92 (112)
+-||++.+.=- +.+||+|++++ .+.. .=-.||..|=+.|.++++.|++..
T Consensus 107 ~~gek~~~kpE~ee~~lsvgdD~~--SFL~-------~CS~faaQLEeAvKEE~niLeSLf 158 (170)
T PF15368_consen 107 QNGEKPIVKPEQEELSLSVGDDMN--SFLL-------CCSQFAAQLEEAVKEERNILESLF 158 (170)
T ss_pred ccccccccCCccccccccccccHH--HHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566655443 34688888765 2210 012367777788888888887753
No 50
>PRK14344 lipoate-protein ligase B; Provisional
Probab=21.58 E-value=51 Score=26.59 Aligned_cols=26 Identities=35% Similarity=0.592 Sum_probs=20.2
Q ss_pred hhcceeeeeeecceeeeccccc-hhhh
Q 033757 34 EVGEKRVISFHGAGLSVAPEIS-FADI 59 (112)
Q Consensus 34 eIGE~R~i~f~gvgls~g~EI~-~~~~ 59 (112)
.|.=+|.+++||+.||+.+++. |+.|
T Consensus 158 Gv~v~r~vT~HG~ALNv~~dL~~F~~I 184 (223)
T PRK14344 158 GIGCRRWITQHGFSLNVDCDLEGFNKI 184 (223)
T ss_pred eEeEecceeecceEEecCCCccccCcE
Confidence 3446799999999999999874 4544
No 51
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=21.48 E-value=36 Score=27.48 Aligned_cols=46 Identities=20% Similarity=0.389 Sum_probs=35.0
Q ss_pred CCCcceeeehhhhccCCCCChhhhhhhcceeeeeeecceeeeccccc
Q 033757 9 GIPGHIYPLALLCHDIMPPPPQVEREVGEKRVISFHGAGLSVAPEIS 55 (112)
Q Consensus 9 ~~ptHfyPlAL~tydImPPP~~vekeIGE~R~i~f~gvgls~g~EI~ 55 (112)
-.|||++||--.---++=-+-..|..+-=-|...+.|+|+ ++|-++
T Consensus 133 ~rPGHvfPL~a~~gGvl~R~GHTEaavdLa~lAGl~p~~v-icEil~ 178 (218)
T PRK00910 133 ARPGHVFPLRARAGGVLARRGHTEGTVDLMQMAGLQPAGV-LCELTN 178 (218)
T ss_pred CCCCccceEEeCCCCEecCCCccHHHHHHHHHcCCCceEE-EEEEec
Confidence 5899999998766666777778888887788888989876 344444
No 52
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=21.14 E-value=1.2e+02 Score=18.68 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 033757 66 PEEAKEVYTQAFYNSVTEQYNV 87 (112)
Q Consensus 66 ~eear~a~s~~ly~~V~~~Y~~ 87 (112)
.+|.|+++++.+.+.+.+.+++
T Consensus 13 s~EqK~~L~~~it~a~~~~~~~ 34 (60)
T PRK02289 13 SQEQKNALAREVTEVVSRIAKA 34 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHhCc
Confidence 4567778999999999887654
No 53
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=21.13 E-value=2.3e+02 Score=26.06 Aligned_cols=74 Identities=14% Similarity=0.220 Sum_probs=41.9
Q ss_pred hhhhhcCCCcceeeehhhhccCCCCChhhhhhhcceeeeeeecceeeeccccchhhhhhccCChHHHHHHHHHHHHHHHH
Q 033757 3 RLAEHSGIPGHIYPLALLCHDIMPPPPQVEREVGEKRVISFHGAGLSVAPEISFADIITASKNPEEAKEVYTQAFYNSVT 82 (112)
Q Consensus 3 ~L~~~s~~ptHfyPlAL~tydImPPP~~vekeIGE~R~i~f~gvgls~g~EI~~~~~~~~~~~~eear~a~s~~ly~~V~ 82 (112)
+|++++++| +.|+++..-.-.+.. ...+ ..+-..+..|-+.+++.|.+++.... +.++.|+...+.+.+...
T Consensus 549 ~~a~~~~~~--i~pv~i~g~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~l--~~~e~r~~~~~~l~~~~~ 620 (1140)
T PRK06814 549 MIADKAGAM--VVPVRIDGLQFTHFS-RLKN---QVRRKWFPKVTVTILPPVKLAVDPEL--KGRERRSAAGAALYDIMS 620 (1140)
T ss_pred HHHHHCCCC--EEEEEEcCccccccc-ccCC---CcccccCCceEEEecCCcccCCCccc--cchhhHHHHHHHHHHHHH
Confidence 467788877 899998754333222 2222 11222345688999999988765432 233445555555555444
Q ss_pred HH
Q 033757 83 EQ 84 (112)
Q Consensus 83 ~~ 84 (112)
+.
T Consensus 621 ~~ 622 (1140)
T PRK06814 621 DM 622 (1140)
T ss_pred HH
Confidence 43
No 54
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=20.27 E-value=73 Score=29.85 Aligned_cols=56 Identities=16% Similarity=0.363 Sum_probs=34.6
Q ss_pred hhhhccCCCCChhhhhhhcceeeeeeecceeeeccccchhhh------hhccCChHHHHHHHHHHHH
Q 033757 18 ALLCHDIMPPPPQVEREVGEKRVISFHGAGLSVAPEISFADI------ITASKNPEEAKEVYTQAFY 78 (112)
Q Consensus 18 AL~tydImPPP~~vekeIGE~R~i~f~gvgls~g~EI~~~~~------~~~~~~~eear~a~s~~ly 78 (112)
++..-|.-|+|.+|+|- .-+|..+=..=..+++.++= ....-+++|-|+|+|-|+.
T Consensus 291 vvVAtDVtp~P~~V~Ki-----Aasf~A~ly~P~~dLsveEK~~~~r~~~~~~~ddH~RDALAAA~k 352 (652)
T COG2433 291 VVVATDVTPAPETVKKI-----AASFNAVLYTPDRDLSVEEKQEALRTLKISVSDDHERDALAAAYK 352 (652)
T ss_pred eEEEccCCCChHHHHHH-----HHHcCCcccCCcccCCHHHHHHHHhhcCCCCCCchHHHHHHHHHH
Confidence 45667999999999982 12444443322444444442 2345577789998886654
No 55
>PRK08330 biotin--protein ligase; Provisional
Probab=20.07 E-value=3.3e+02 Score=21.00 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=24.4
Q ss_pred eeeecceeeeccccchh--h-hhhcc--CChHHHHHHHHHHHHHHHHHHHHHHH
Q 033757 41 ISFHGAGLSVAPEISFA--D-IITAS--KNPEEAKEVYTQAFYNSVTEQYNVLK 89 (112)
Q Consensus 41 i~f~gvgls~g~EI~~~--~-~~~~~--~~~eear~a~s~~ly~~V~~~Y~~l~ 89 (112)
....|+|||+..++.-+ + .++.. ...+-.++.+...+.+.+.+.|..+.
T Consensus 117 ~~viGiGiNv~~~~p~~l~~~atsL~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 170 (236)
T PRK08330 117 FVVLGIGLNVNNEIPDELRETATSMKEVLGREVPLIEVFKRLVENLDRWYKLFL 170 (236)
T ss_pred EEEEEEEEecCCCCCcccccccccHHHhhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 67899999996432211 1 11110 01111234455566666666666554
Done!