Query 033758
Match_columns 112
No_of_seqs 124 out of 1215
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 05:58:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033758.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033758hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00405 cytochrome c; Provisi 100.0 2.4E-31 5.2E-36 163.0 10.0 108 5-112 7-114 (114)
2 COG3474 Cytochrome c2 [Energy 100.0 4.4E-30 9.6E-35 157.7 8.7 101 10-111 29-131 (135)
3 PTZ00048 cytochrome c; Provisi 100.0 1.3E-28 2.9E-33 151.3 10.2 105 7-112 10-114 (115)
4 KOG3453 Cytochrome c [Energy p 99.7 1.8E-18 3.9E-23 103.3 5.0 105 7-111 4-108 (110)
5 TIGR03872 cytochrome_MoxG cyto 99.7 1.4E-16 2.9E-21 100.2 7.7 82 9-112 41-123 (133)
6 TIGR02603 CxxCH_TIGR02603 puta 99.7 4.1E-16 8.9E-21 98.2 7.2 35 10-45 1-35 (133)
7 PRK13617 psbV cytochrome c-550 99.6 2.1E-15 4.6E-20 97.2 5.8 87 10-112 57-157 (170)
8 CHL00183 petJ cytochrome c553; 99.6 6.8E-15 1.5E-19 89.5 7.3 84 7-111 21-104 (108)
9 PF13442 Cytochrome_CBB3: Cyto 99.6 1.6E-15 3.6E-20 84.8 4.1 66 11-107 2-67 (67)
10 PF00034 Cytochrom_C: Cytochro 99.6 3.3E-17 7.1E-22 95.4 -3.3 36 12-47 1-37 (91)
11 TIGR03874 4cys_cytochr c-type 99.6 1.1E-14 2.3E-19 92.1 7.5 80 11-111 32-116 (143)
12 TIGR03045 PS_II_C550 cytochrom 99.6 9E-15 1.9E-19 94.0 7.1 89 8-112 47-149 (159)
13 CHL00133 psbV photosystem II c 99.6 8.2E-15 1.8E-19 94.4 6.8 88 8-111 48-149 (163)
14 PRK13618 psbV cytochrome c-550 99.6 1.5E-14 3.2E-19 93.2 8.0 90 7-111 47-149 (163)
15 PRK13621 psbV cytochrome c-550 99.5 7E-15 1.5E-19 94.7 4.9 89 8-111 62-155 (170)
16 TIGR03046 PS_II_psbV2 photosys 99.5 9.5E-15 2.1E-19 93.2 4.7 89 8-111 51-144 (155)
17 COG2863 Cytochrome c553 [Energ 99.5 1.2E-14 2.6E-19 89.1 4.2 80 8-111 20-101 (121)
18 PRK13620 psbV cytochrome c-550 99.5 4.4E-14 9.6E-19 93.1 7.1 89 7-112 99-202 (215)
19 PRK13697 cytochrome c6; Provis 99.5 6.1E-14 1.3E-18 85.6 7.1 83 8-111 24-106 (111)
20 TIGR00782 ccoP cytochrome c ox 99.5 9.4E-14 2E-18 97.3 8.4 82 10-112 201-283 (285)
21 PRK14487 cbb3-type cytochrome 99.4 2.5E-13 5.4E-18 90.5 6.4 82 10-111 49-159 (217)
22 TIGR00782 ccoP cytochrome c ox 99.4 3.5E-13 7.6E-18 94.5 6.7 81 12-111 107-193 (285)
23 PRK13619 psbV cytochrome c-550 99.4 3.2E-13 7E-18 85.8 5.3 89 8-111 47-148 (160)
24 PRK14486 putative bifunctional 99.4 2.5E-12 5.5E-17 90.3 8.3 79 10-111 213-291 (294)
25 PRK13622 psbV cytochrome c-550 99.3 1.3E-11 2.9E-16 80.4 6.8 90 7-111 57-159 (180)
26 COG2010 CccA Cytochrome c, mon 99.3 5.3E-12 1.2E-16 80.4 3.7 34 10-43 49-84 (150)
27 COG3258 Cytochrome c [Energy p 99.2 4.5E-11 9.7E-16 81.5 6.5 88 7-111 157-252 (293)
28 PF14495 Cytochrom_C550: Cytoc 99.2 1.4E-11 3E-16 76.1 2.0 87 9-110 22-121 (135)
29 TIGR00781 ccoO cytochrome c ox 99.1 1.7E-10 3.6E-15 77.6 6.3 81 10-110 48-157 (232)
30 PRK14486 putative bifunctional 99.1 2.3E-10 4.9E-15 80.5 6.5 98 10-111 49-187 (294)
31 COG4654 Cytochrome c551/c552 [ 98.9 1.8E-09 3.8E-14 63.9 3.8 84 8-109 19-104 (110)
32 TIGR03791 TTQ_mauG tryptophan 98.7 7.1E-08 1.5E-12 67.9 7.7 105 7-111 154-279 (291)
33 PF02433 FixO: Cytochrome C ox 98.5 7.1E-07 1.5E-11 60.2 6.4 97 10-110 48-157 (226)
34 PRK14485 putative bifunctional 98.3 3E-06 6.5E-11 66.0 6.9 97 10-110 535-647 (712)
35 COG2857 CYT1 Cytochrome c1 [En 98.2 6E-06 1.3E-10 57.1 6.8 44 69-112 171-214 (250)
36 PF09086 DUF1924: Domain of un 98.0 4.9E-06 1.1E-10 49.1 2.9 83 5-107 4-98 (98)
37 COG2993 CcoO Cbb3-type cytochr 97.9 2.7E-06 5.8E-11 56.2 0.4 81 11-111 51-160 (227)
38 COG3245 CycB Cytochrome c5 [En 97.7 8E-05 1.7E-09 45.5 4.8 75 14-111 49-125 (126)
39 PF09098 Dehyd-heme_bind: Quin 97.7 1.7E-05 3.8E-10 51.1 1.7 18 14-31 2-19 (167)
40 PF02167 Cytochrom_C1: Cytochr 97.4 4.4E-05 9.5E-10 51.8 0.6 23 8-30 11-33 (219)
41 PF06537 DUF1111: Protein of u 97.4 7.3E-05 1.6E-09 56.0 1.5 24 7-30 358-382 (499)
42 PF10643 Cytochrome-c551: Phot 96.9 0.00034 7.4E-09 46.8 1.0 22 9-30 166-187 (233)
43 PF14376 Haem_bd: Haem-binding 96.9 0.00099 2.1E-08 42.1 2.8 41 70-110 95-136 (137)
44 COG3748 Predicted membrane pro 96.8 0.0031 6.7E-08 45.1 5.1 74 11-110 323-403 (407)
45 KOG3052 Cytochrome c1 [Energy 96.6 0.00059 1.3E-08 47.1 0.3 27 4-30 87-113 (311)
46 TIGR03806 chp_HNE_0200 conserv 96.5 0.014 3.1E-07 41.8 6.8 20 12-31 213-232 (317)
47 COG1858 MauG Cytochrome c pero 95.9 0.02 4.4E-07 41.7 5.2 24 7-30 215-240 (364)
48 TIGR02162 torC trimethylamine- 95.8 0.014 3E-07 43.0 3.8 18 13-30 322-339 (386)
49 COG3488 Predicted thiol oxidor 95.5 0.045 9.8E-07 39.6 5.3 23 7-29 346-369 (481)
50 PRK15032 trimethylamine N-oxid 95.2 0.034 7.3E-07 41.0 4.1 18 13-30 319-336 (390)
51 COG3258 Cytochrome c [Energy p 94.9 0.14 2.9E-06 35.9 6.1 16 96-111 121-136 (293)
52 PF09626 DHC: Dihaem cytochrom 94.4 0.079 1.7E-06 32.8 3.8 12 19-30 1-12 (120)
53 PF03150 CCP_MauG: Di-haem cyt 93.5 0.032 6.9E-07 36.2 0.8 20 11-30 4-32 (159)
54 TIGR03791 TTQ_mauG tryptophan 91.0 0.09 1.9E-06 37.4 0.7 22 10-31 4-34 (291)
55 PF07635 PSCyt1: Planctomycete 88.5 0.27 5.8E-06 26.4 1.1 9 23-31 1-9 (59)
56 COG2857 CYT1 Cytochrome c1 [En 87.0 0.1 2.2E-06 36.3 -1.3 24 8-31 39-62 (250)
57 COG1858 MauG Cytochrome c pero 84.9 0.51 1.1E-05 34.6 1.3 24 9-32 59-91 (364)
58 PF06537 DUF1111: Protein of u 76.6 1.5 3.3E-05 33.5 1.4 17 18-34 66-83 (499)
59 PF09832 DUF2059: Uncharacteri 75.4 2.8 6.1E-05 22.5 2.0 17 93-109 15-31 (64)
60 PF07583 PSCyt2: Protein of un 73.0 1.6 3.5E-05 29.6 0.8 13 17-29 168-183 (208)
61 TIGR03153 cytochr_NrfH cytochr 69.6 1.8 3.9E-05 27.2 0.3 16 14-29 96-111 (135)
62 PF07627 PSCyt3: Protein of un 69.3 2.5 5.4E-05 25.4 0.9 8 22-29 71-78 (101)
63 PF08090 Enterotoxin_HS1: Heat 65.9 2.4 5.3E-05 19.8 0.3 10 21-30 20-29 (36)
64 PF11845 DUF3365: Protein of u 63.9 2 4.3E-05 28.1 -0.3 8 21-28 147-154 (188)
65 PHA02119 hypothetical protein 54.7 8.9 0.00019 21.4 1.3 11 101-111 57-67 (87)
66 TIGR01905 paired_CXXCH_1 doubl 54.5 5.1 0.00011 19.9 0.3 10 22-31 8-17 (41)
67 PF06943 zf-LSD1: LSD1 zinc fi 54.0 6.2 0.00013 17.5 0.5 8 22-29 18-25 (25)
68 PF09699 Paired_CXXCH_1: Doubl 51.5 5.7 0.00012 19.3 0.2 10 22-31 8-17 (41)
69 COG3488 Predicted thiol oxidor 51.0 7.2 0.00016 28.7 0.8 16 18-33 93-109 (481)
70 PF14769 CLAMP: Flagellar C1a 49.6 50 0.0011 19.4 4.2 17 93-109 62-78 (101)
71 TIGR01904 GSu_C4xC__C2xCH Geob 49.0 7.1 0.00015 19.5 0.4 6 22-27 37-42 (42)
72 PF13822 ACC_epsilon: Acyl-CoA 46.9 23 0.0005 19.1 2.2 18 94-111 10-27 (62)
73 PF10281 Ish1: Putative stress 42.9 40 0.00087 16.0 3.6 16 67-82 3-18 (38)
74 TIGR01053 LSD1 zinc finger dom 42.7 9.7 0.00021 17.7 0.3 9 22-30 21-29 (31)
75 PF13821 DUF4187: Domain of un 41.8 24 0.00051 18.7 1.7 14 96-109 12-25 (55)
76 TIGR02251 HIF-SF_euk Dullard-l 41.8 35 0.00075 21.9 2.8 23 90-112 137-159 (162)
77 PF07128 DUF1380: Protein of u 40.7 72 0.0016 20.4 4.0 36 64-110 23-58 (139)
78 COG3005 TorC Nitrate/TMAO redu 40.1 11 0.00024 25.2 0.4 15 16-30 130-144 (190)
79 PF02304 Phage_B: Scaffold pro 39.8 19 0.00041 21.8 1.3 18 11-28 63-82 (117)
80 cd07922 CarBa CarBa is the A s 39.0 14 0.00031 21.2 0.6 31 68-104 15-45 (81)
81 TIGR02826 RNR_activ_nrdG3 anae 39.0 71 0.0015 20.3 3.9 9 22-30 28-36 (147)
82 PHA00003 B internal scaffoldin 37.9 26 0.00056 21.3 1.6 18 11-28 66-85 (120)
83 COG3303 NrfA Formate-dependent 37.3 11 0.00024 28.1 0.0 14 17-30 327-340 (501)
84 PF13435 Cytochrome_C554: Cyto 37.1 26 0.00056 20.5 1.6 11 21-31 49-59 (130)
85 TIGR03152 cyto_c552_HCOOH form 36.6 53 0.0011 25.1 3.4 18 89-109 190-207 (439)
86 KOG1200 Mitochondrial/plastidi 36.5 42 0.00092 23.1 2.6 20 90-109 218-237 (256)
87 COG5204 SPT4 Transcription elo 36.0 45 0.00097 19.9 2.4 35 69-104 62-97 (112)
88 PF13453 zf-TFIIB: Transcripti 34.7 15 0.00033 17.8 0.3 8 22-29 21-28 (41)
89 PF10058 DUF2296: Predicted in 34.5 16 0.00035 19.2 0.3 13 19-31 21-33 (54)
90 cd03271 ABC_UvrA_II The excisi 34.1 18 0.00039 25.3 0.7 15 96-110 204-218 (261)
91 PF09722 DUF2384: Protein of u 34.1 41 0.00089 17.2 1.9 41 69-110 10-50 (54)
92 PF14522 Cytochrome_C7: Cytoch 33.5 17 0.00037 19.1 0.3 8 22-29 14-21 (65)
93 PRK11586 napB nitrate reductas 33.4 18 0.00038 23.3 0.4 17 14-30 72-90 (149)
94 cd07321 Extradiol_Dioxygenase_ 33.4 22 0.00049 20.0 0.8 31 69-105 15-45 (77)
95 PF04320 DUF469: Protein with 33.2 61 0.0013 19.5 2.7 19 93-111 68-86 (101)
96 PHA02902 putative IMV membrane 33.2 52 0.0011 18.1 2.2 20 90-109 49-68 (70)
97 PF12408 DUF3666: Ribose-5-pho 32.7 30 0.00065 17.9 1.2 14 97-110 35-48 (48)
98 CHL00037 petA cytochrome f 32.7 15 0.00032 26.4 0.0 8 22-29 55-62 (320)
99 PF06677 Auto_anti-p27: Sjogre 32.0 29 0.00063 17.2 1.0 17 12-28 9-25 (41)
100 PRK02693 apocytochrome f; Revi 32.0 16 0.00034 26.1 0.0 8 22-29 48-55 (312)
101 PHA02681 ORF089 virion membran 31.9 55 0.0012 19.0 2.2 21 90-110 47-67 (92)
102 KOG3309 Ferredoxin [Energy pro 31.7 16 0.00035 23.7 0.1 8 22-29 86-93 (159)
103 PF14537 Cytochrom_c3_2: Cytoc 31.0 20 0.00044 19.5 0.4 8 22-29 8-15 (80)
104 COG0633 Fdx Ferredoxin [Energy 29.2 20 0.00044 21.3 0.2 8 22-29 44-51 (102)
105 PF11829 DUF3349: Protein of u 29.0 71 0.0015 19.0 2.5 18 92-109 33-50 (96)
106 CHL00136 rpl31 ribosomal prote 28.9 23 0.00051 19.6 0.4 10 21-30 36-45 (68)
107 PF07102 DUF1364: Protein of u 28.8 12 0.00026 22.2 -0.8 8 22-29 53-60 (94)
108 PF02335 Cytochrom_C552: Cytoc 28.7 28 0.00061 26.4 0.9 10 19-28 271-280 (434)
109 cd06395 PB1_Map2k5 PB1 domain 28.6 63 0.0014 18.7 2.1 14 96-109 58-71 (91)
110 PF13986 DUF4224: Domain of un 28.6 34 0.00074 17.4 1.0 13 94-106 2-14 (47)
111 PF03264 Cytochrom_NNT: NapC/N 28.2 20 0.00044 23.2 0.1 18 13-30 113-134 (173)
112 PF11256 DUF3055: Protein of u 27.9 69 0.0015 18.5 2.2 15 96-110 67-81 (81)
113 PRK00019 rpmE 50S ribosomal pr 27.6 25 0.00055 19.7 0.4 10 21-30 36-45 (72)
114 PF00432 Prenyltrans: Prenyltr 26.6 71 0.0015 15.5 1.9 13 99-111 2-14 (44)
115 PF15161 Neuropep_like: Neurop 26.1 21 0.00045 19.1 -0.1 9 22-30 15-23 (65)
116 cd08168 Cytochrom_C3 Heme-bind 26.0 19 0.0004 20.3 -0.4 14 17-30 55-68 (85)
117 PF14566 PTPlike_phytase: Inos 25.8 66 0.0014 20.3 2.1 17 96-112 107-123 (149)
118 PF08263 LRRNT_2: Leucine rich 25.8 78 0.0017 15.2 2.0 15 97-111 2-16 (43)
119 TIGR02245 HAD_IIID1 HAD-superf 25.7 1.4E+02 0.0031 20.0 3.8 36 74-111 140-179 (195)
120 PRK01397 50S ribosomal protein 25.6 29 0.00063 19.8 0.4 11 20-30 34-44 (78)
121 TIGR03823 FliZ flagellar regul 25.4 22 0.00049 23.1 -0.1 10 20-29 22-31 (168)
122 PF06252 DUF1018: Protein of u 25.3 74 0.0016 19.3 2.2 14 96-109 56-69 (119)
123 cd07921 PCA_45_Doxase_A_like S 25.0 43 0.00093 20.3 1.1 31 69-105 25-55 (106)
124 PF02375 JmjN: jmjN domain; I 24.7 49 0.0011 15.7 1.0 16 96-111 6-21 (34)
125 smart00545 JmjN Small domain f 24.5 50 0.0011 16.4 1.1 16 96-111 8-23 (42)
126 PRK11582 flagella biosynthesis 23.7 26 0.00056 22.9 -0.1 10 20-29 22-31 (169)
127 PF10955 DUF2757: Protein of u 23.6 22 0.00048 20.2 -0.3 13 94-106 31-43 (76)
128 PF02276 CytoC_RC: Photosynthe 23.4 16 0.00034 26.5 -1.2 10 19-28 285-294 (314)
129 COG1579 Zn-ribbon protein, pos 23.3 30 0.00066 24.1 0.2 8 22-29 199-206 (239)
130 PF01197 Ribosomal_L31: Riboso 22.7 37 0.00079 18.8 0.4 10 21-30 37-46 (69)
131 PRK00528 rpmE 50S ribosomal pr 22.6 36 0.00078 19.0 0.4 11 20-30 37-47 (71)
132 PF15332 LIME1: Lck-interactin 22.5 35 0.00076 23.2 0.4 8 23-30 2-9 (228)
133 COG3043 NapB Nitrate reductase 22.4 60 0.0013 21.0 1.4 8 22-29 88-95 (155)
134 PRK11125 nrfA cytochrome c nit 22.1 31 0.00066 26.6 0.1 10 19-28 311-320 (480)
135 PRK11659 cytochrome c nitrite 21.7 29 0.00062 23.0 -0.1 10 22-31 134-143 (183)
136 PF03892 NapB: Nitrate reducta 21.7 33 0.00071 21.7 0.1 9 22-30 111-119 (133)
137 TIGR00105 L31 ribosomal protei 21.6 38 0.00083 18.7 0.4 10 21-30 36-45 (68)
138 PRK01678 rpmE2 50S ribosomal p 21.6 38 0.00083 19.8 0.4 11 20-30 48-58 (87)
139 PF13099 DUF3944: Domain of un 21.5 1.1E+02 0.0023 14.7 1.9 15 94-108 12-26 (35)
140 COG3183 Predicted restriction 21.0 25 0.00055 24.8 -0.5 9 22-30 243-251 (272)
141 TIGR03146 cyt_nit_nrfB cytochr 20.9 33 0.00071 21.7 0.0 10 22-31 111-120 (145)
142 COG0254 RpmE Ribosomal protein 20.7 41 0.00089 19.1 0.4 10 21-30 38-47 (75)
143 PTZ00490 Ferredoxin superfamil 20.5 35 0.00075 21.8 0.1 8 22-29 79-86 (143)
144 TIGR03631 bact_S13 30S ribosom 20.4 1.2E+02 0.0025 18.5 2.3 16 93-108 44-59 (113)
145 smart00386 HAT HAT (Half-A-TPR 20.3 73 0.0016 13.3 1.2 17 11-27 2-18 (33)
146 PF07295 DUF1451: Protein of u 20.2 1E+02 0.0022 19.8 2.1 17 93-109 31-47 (146)
147 PF15182 OTOS: Otospiralin 20.1 1.6E+02 0.0035 16.1 2.6 23 88-111 16-38 (69)
148 PF09383 NIL: NIL domain; Int 20.1 1.2E+02 0.0025 16.5 2.2 15 96-110 55-69 (76)
No 1
>PTZ00405 cytochrome c; Provisional
Probab=99.97 E-value=2.4e-31 Score=162.99 Aligned_cols=108 Identities=53% Similarity=0.938 Sum_probs=99.6
Q ss_pred CCCCCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCC
Q 033758 5 EEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYI 84 (112)
Q Consensus 5 ~~~~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 84 (112)
.+++.+++++|+++|..+|.+||.++.++.+.+||+|.++.+|..+..++|.|+..++..+++|+.+.|..||.+|...+
T Consensus 7 ~~~~~gd~~~G~~lF~~~C~aCH~~~~~~~~~vGP~L~gv~gR~~g~~~~~~YS~al~~~g~~wd~~~L~~~l~~P~~~~ 86 (114)
T PTZ00405 7 APLPPGDAERGEKLFKGRAAQCHTATKGGSNGVGPNLFGIVNRKSGTVEGFAYSKANADSGVIWTPEVLDVYLENPKKFM 86 (114)
T ss_pred ccCCccCHHHHHHHHHhhhHhhCCCCCCCCCCcCCCccccccCccccccCccccHHHHhccCcCCHHHHHHHHHCHHhhC
Confidence 45677899999999998899999987555578999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhhcC
Q 033758 85 PGTKMVFPGLKKPQDRADLIAYLKESTA 112 (112)
Q Consensus 85 ~~~~m~~~~~l~~~ei~~l~ayl~sl~~ 112 (112)
|+++|+|.++.+++|+++||+||++|+.
T Consensus 87 pgt~M~f~gl~~~~dr~~liaYL~sl~~ 114 (114)
T PTZ00405 87 PGTKMSFAGIKKPQERADVIAYLETLKD 114 (114)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999863
No 2
>COG3474 Cytochrome c2 [Energy production and conversion]
Probab=99.97 E-value=4.4e-30 Score=157.69 Aligned_cols=101 Identities=55% Similarity=1.016 Sum_probs=96.7
Q ss_pred CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhcccc--ceeeCHHHHHHHHhCCCCCCCCC
Q 033758 10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGM--AVIWEEKTLYDYLLNPKKYIPGT 87 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~ 87 (112)
+++..|+.+|.+ |..||+++.++.+.+||.|.++.+|..++.++|.|+..++.. +++|+.+.|..||.+|...+||+
T Consensus 29 ~da~~G~~vFkk-C~~CH~i~~~g~nkvGP~L~gVvGR~ags~egf~YS~Amk~~~~g~vWd~~~L~~fL~~Pkk~vpGT 107 (135)
T COG3474 29 GDAAAGEKVFKK-CQACHSIEKGGPNKVGPHLWGVVGRPAGSVEGFSYSAAMKKAGGGIVWDEDNLDEFLTAPKKYVPGT 107 (135)
T ss_pred ccHHHhHHHHHH-HHHhhccccCCCCCCCCccccccCccccccCCcccCHHHHhccCCcccCHHHHHHHHhChhhhCCCc
Confidence 899999999996 999999998778999999999999999999999999988888 89999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhc
Q 033758 88 KMVFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 88 ~m~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
.|.|.++..++|+.+||+||++++
T Consensus 108 kM~faGlkk~~dradlIAYLk~~~ 131 (135)
T COG3474 108 KMAFAGLKKDQDRADLIAYLKSLP 131 (135)
T ss_pred ceeecCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999976
No 3
>PTZ00048 cytochrome c; Provisional
Probab=99.96 E-value=1.3e-28 Score=151.33 Aligned_cols=105 Identities=59% Similarity=1.133 Sum_probs=95.4
Q ss_pred CCCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCC
Q 033758 7 APPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPG 86 (112)
Q Consensus 7 ~~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 86 (112)
++.+++++|+++|+++|..||++++.+...+||+|.++.+|..+. ++|.|+..+...++.|+++.|..||.+|....|+
T Consensus 10 ~~~~~~~~G~~~f~~~C~~CH~~~~~g~~~~GP~L~Gi~gR~~g~-~~~~ys~~~~~~g~~wt~~~L~~~l~~P~~~~pg 88 (115)
T PTZ00048 10 VPEGDAKKGAKLFKAKCAQCHTINKGGAVKQGPNLHGFYGRKSGS-ADFPYSDANKNSGIVWSDKHLFEYLVNPKLYIPG 88 (115)
T ss_pred CCcccHHHHHHHHHhhhhhcCCCcCCCCCCcCCcccccccccccC-CCCccchhhhhcccccCHHHHHHHHhCcCccCCC
Confidence 556789999999998999999998766678999999999999887 8898888777788999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhcC
Q 033758 87 TKMVFPGLKKPQDRADLIAYLKESTA 112 (112)
Q Consensus 87 ~~m~~~~~l~~~ei~~l~ayl~sl~~ 112 (112)
+.|+|.++.+++|+++|++||++|+.
T Consensus 89 t~M~~~gl~~~~~~~~liaYL~s~~~ 114 (115)
T PTZ00048 89 TKMVFAGIKKEKERADLIAYLKEASS 114 (115)
T ss_pred CccCcCCCCCHHHHHHHHHHHHHhcc
Confidence 99999999889999999999999873
No 4
>KOG3453 consensus Cytochrome c [Energy production and conversion]
Probab=99.75 E-value=1.8e-18 Score=103.32 Aligned_cols=105 Identities=63% Similarity=1.083 Sum_probs=96.7
Q ss_pred CCCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCC
Q 033758 7 APPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPG 86 (112)
Q Consensus 7 ~~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 86 (112)
..+.+.+.|.++|.+.|..||.++..+...++|.|.++.++..+...+|.++...+..|++|..+.|..+|.+|....|+
T Consensus 4 ~~~~d~~~g~~~f~~rc~qch~~~~~~~~k~~p~l~gl~g~~~g~~~~~sy~~a~KnKgV~wgE~tl~eyLenpkkyipG 83 (110)
T KOG3453|consen 4 VPAGDVEKGKKIFPQRCAQCHTVEKGGFHKTGPNLHGLFGRQLGQAAGLSYTDANKNKGVTWGEDTLMEYLENPKKYIPG 83 (110)
T ss_pred ccccccccccccceeeccccccccCCcccccCCcchhhHHHhhccccCcceeecccCCceEEcchhHHHHHhCCCccccc
Confidence 45678899999999999999999876777899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhc
Q 033758 87 TKMVFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 87 ~~m~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
+.|-|.++....|..|+++|+.+-+
T Consensus 84 tKmifaGikk~~eraDlIayl~ka~ 108 (110)
T KOG3453|consen 84 TKMIFAGIKKKAERADLIAYLKKAT 108 (110)
T ss_pred cceeecccCchHHHHHHHHHHHHhc
Confidence 9999999987799999999997643
No 5
>TIGR03872 cytochrome_MoxG cytochrome c(L), periplasmic. This model describes a periplasmic c-type cytochrome that serves as the primary electron acceptor for the quinoprotein methanol dehydrogenase, a PQQ enzyme. The member from Paracoccus denitrificans is also characterized as an electron acceptor for methylamine dehydrogenase, a tryptophan tryptophylquinone enzyme. This protein is called cytochrome c(L) in methylotrophic bacteria such Methylobacterium extorquens, but c551i in Paracoccus denitrificans.
Probab=99.69 E-value=1.4e-16 Score=100.16 Aligned_cols=82 Identities=22% Similarity=0.361 Sum_probs=57.7
Q ss_pred CCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCC
Q 033758 9 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTK 88 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 88 (112)
...++.|+++|..+|+.||+.++.| .++|.|.+....+.. ....+.|.+.+.++. ..+
T Consensus 41 ~~~~a~G~~ly~~~CAaCHG~~g~G--~~gP~L~~~~~~~~~----------------~~~~~~l~~~i~~G~----~g~ 98 (133)
T TIGR03872 41 AEALKKGESLFATACSGCHGHLAEG--KLGPGLNDDYWTYPK----------------NTTDKGLFETIFGGA----NGM 98 (133)
T ss_pred HHHHHHHHHHHHHhhHHhCCCCCCC--CCCCCCcCcccccCC----------------cccHHHHHHHHHcCC----CCC
Confidence 3456899999999999999997654 357998764211100 002445667666653 235
Q ss_pred C-CCCCCCCHHHHHHHHHHHHhhcC
Q 033758 89 M-VFPGLKKPQDRADLIAYLKESTA 112 (112)
Q Consensus 89 m-~~~~~l~~~ei~~l~ayl~sl~~ 112 (112)
| +|...|+++||++|++||+++.+
T Consensus 99 Mp~~~~~LsdeeI~aLaaYI~sl~~ 123 (133)
T TIGR03872 99 MGPQYGNLTLDEMLQIMAWIRHLYT 123 (133)
T ss_pred CcccccCCCHHHHHHHHHHHHHhCC
Confidence 6 57788999999999999999864
No 6
>TIGR02603 CxxCH_TIGR02603 putative heme-binding domain, Pirellula/Verrucomicrobium type. This model represents a domain limited to very few species but expanded into large paralogous families in some species that conain it. We find it in over 20 copies each in Pirellula sp. strain 1 (phylum Planctomycetes) and Verrucomicrobium spinosum DSM 4136 (phylum Verrucomicrobia), and no matches above trusted cutoff an any other species so far. This domain, about 140 amino acids long, contains an absolutely conserved motif CxxCH, the cytochrome c family heme-binding site signature (PS00190).
Probab=99.66 E-value=4.1e-16 Score=98.19 Aligned_cols=35 Identities=26% Similarity=0.690 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCcc
Q 033758 10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLF 45 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~ 45 (112)
+++++|+.+|.+.|+.||++++.+ ...||.|.++.
T Consensus 1 gd~~~G~~~f~~~C~~CH~~~g~g-~~~gP~L~~~~ 35 (133)
T TIGR02603 1 GDAEKGKAVYAQRCYVCHRIGGEG-VDVGPDLTGVG 35 (133)
T ss_pred CCHHHHHHHHHhHHHHhCCCCCCC-CccCCCccccc
Confidence 478899999998899999998644 46899999864
No 7
>PRK13617 psbV cytochrome c-550; Provisional
Probab=99.60 E-value=2.1e-15 Score=97.24 Aligned_cols=87 Identities=24% Similarity=0.318 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHhhCcccccccCCC-CCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCC----
Q 033758 10 GNPKAGEKIFKTKCAQCHTVVKGA-GHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYI---- 84 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~~-~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---- 84 (112)
++.++|+++|+.+|+.||...+.. .+.+||+|..+..-. +. ..+.+.|.+||++|..+.
T Consensus 57 ~~~~~G~~~F~~~C~~CH~~g~T~~n~~vg~dL~~L~aa~----p~------------r~nv~aLv~yikdP~sydg~~s 120 (170)
T PRK13617 57 SEIKAGRKVFNTSCGTCHAGGITKTNQNVGLDPETLALAT----PA------------RDNVDALVDYLKDPTSYDGEYS 120 (170)
T ss_pred HHHHHHHHHHHcchhhhccCCCcCCCCCcCCCHHHHhccC----CC------------CCCHHHHHHHHhChHhhcchhh
Confidence 456899999988999999765422 346899986552211 00 016789999999997655
Q ss_pred -----CCC----CCCCCCCCCHHHHHHHHHHHHhhcC
Q 033758 85 -----PGT----KMVFPGLKKPQDRADLIAYLKESTA 112 (112)
Q Consensus 85 -----~~~----~m~~~~~l~~~ei~~l~ayl~sl~~ 112 (112)
|+. .||-.+.+||+|+.+|++||..++|
T Consensus 121 ~~e~~P~~~~~~imP~~~~LsdeeL~alAayLl~~~k 157 (170)
T PRK13617 121 IADLHPSMRSADLYPAMRDLNDEDLRLMAGYILVAPK 157 (170)
T ss_pred ccccCccccccccCcccCCCCHHHHHHHHHHHHhccc
Confidence 543 5663445789999999999998754
No 8
>CHL00183 petJ cytochrome c553; Provisional
Probab=99.59 E-value=6.8e-15 Score=89.52 Aligned_cols=84 Identities=21% Similarity=0.268 Sum_probs=57.8
Q ss_pred CCCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCC
Q 033758 7 APPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPG 86 (112)
Q Consensus 7 ~~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 86 (112)
...+++..|+++|+.+|+.||+. +.+..+|.+.... ..+.... ..+.+.+..+++++..
T Consensus 21 ~~~a~~~~G~~ly~~~Ca~CHg~---g~~~~~P~~~~~~-------------~~l~~~~-~~~~~~i~~~i~~G~~---- 79 (108)
T CHL00183 21 AFAADLDNGEQIFSANCAACHAG---GNNVIMPEKTLKK-------------DALEANS-MNSIEAITYQVTNGKN---- 79 (108)
T ss_pred cccccHHHHHHHHHHHHHHHCCC---CCCCCCCCcccCH-------------HHHhhCc-CCCHHHHHHHHHcCcc----
Confidence 45567889999999999999984 2344577654211 0010001 1156788888888753
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhc
Q 033758 87 TKMVFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 87 ~~m~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
.|++|.+.+|++|+++|++||.++.
T Consensus 80 ~MP~f~~~Ls~~ei~~i~aYi~~~~ 104 (108)
T CHL00183 80 AMPAFGGRLSDEDIEDVANYVLSQA 104 (108)
T ss_pred ccccccCCCCHHHHHHHHHHHHHhh
Confidence 3446877889999999999999875
No 9
>PF13442 Cytochrome_CBB3: Cytochrome C oxidase, cbb3-type, subunit III ; PDB: 1KB0_A 2DGE_D 2CE1_A 2CE0_A 2V07_A 1W2L_A 2ZOO_A 2ZBO_G 1DVV_A 2EXV_A ....
Probab=99.59 E-value=1.6e-15 Score=84.75 Aligned_cols=66 Identities=27% Similarity=0.577 Sum_probs=51.2
Q ss_pred CHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCCC
Q 033758 11 NPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKMV 90 (112)
Q Consensus 11 ~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m~ 90 (112)
+++.|+++|..+|+.||+.+ ..||+|.+. .|+.+.|..++.++.. .|++
T Consensus 2 ~~~~G~~ly~~~C~~CH~~~-----~~gp~l~~~----------------------~~~~~~l~~~i~~g~~----~Mp~ 50 (67)
T PF13442_consen 2 DAAKGKALYEQNCASCHGPG-----GAGPSLAGK----------------------DWSPEELYNIIRNGRG----GMPP 50 (67)
T ss_dssp HHHHHHHHHHHHTHHHHGTG-----SSSSTSTHH----------------------HHHHHHHHHHHHHTBT----TBSC
T ss_pred cHHHHHHHHHhHhHHhcCCC-----ccCccchhh----------------------hhhHHHHHHHHHhCcC----CCCC
Confidence 57899999999999999943 234777632 2356788899888862 4446
Q ss_pred CCCCCCHHHHHHHHHHH
Q 033758 91 FPGLKKPQDRADLIAYL 107 (112)
Q Consensus 91 ~~~~l~~~ei~~l~ayl 107 (112)
|...+|++|+++|++||
T Consensus 51 ~~~~ls~~e~~~l~~yi 67 (67)
T PF13442_consen 51 FGGQLSDEEIEALAAYI 67 (67)
T ss_dssp TTTTSTHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHC
Confidence 77778999999999997
No 10
>PF00034 Cytochrom_C: Cytochrome c; InterPro: IPR003088 Cytochromes c (cytC) can be defined as electron-transfer proteins having one or several haem c groups, bound to the protein by one or, more generally, two thioether bonds involving sulphydryl groups of cysteine residues. The fifth haem iron ligand is always provided by a histidine residue. CytC possess a wide range of properties and function in a large number of different redox processes. Ambler [] recognised four classes of cytC. Class I includes the low-spin soluble cytC of mitochondria and bacteria, with the haem-attachment site towards the N terminus, and the sixth ligand provided by a methionine residue about 40 residues further on towards the C terminus. On the basis of sequence similarity, class I cytC were further subdivided into five classes, IA to IE. Class IB includes the eukaryotic mitochondrial cytC and prokaryotic 'short' cyt c2 exemplified by Rhodopila globiformis cyt c2; class IA includes 'long' cyt c2, such as Rhodospirillum rubrum cyt c2 and Aquaspirillum itersonii cyt c-550, which have several extra loops by comparison with class IB cytC.; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1YNR_B 2AI5_A 1AYG_A 3O5C_C 1YEA_A 3CXH_W 1YTC_A 1YEB_A 2YBB_Y 2B4Z_A ....
Probab=99.58 E-value=3.3e-17 Score=95.37 Aligned_cols=36 Identities=31% Similarity=0.680 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhCcccccccCCCCCCC-CCCCCCccCC
Q 033758 12 PKAGEKIFKTKCAQCHTVVKGAGHKQ-GPNLNGLFGR 47 (112)
Q Consensus 12 ~~~G~~lf~~~C~~CH~~~~~~~~~~-gP~l~~~~~~ 47 (112)
+++|++||..+|++||+.++.+.... +|.|.++..+
T Consensus 1 a~~G~~l~~~~C~~CH~~~~~~~~~~~~p~l~~~~~~ 37 (91)
T PF00034_consen 1 AARGKELFQANCAACHGADGNGDGGGPGPDLTGIGKR 37 (91)
T ss_dssp HHHHHHHHHHHTTTTHBTSTTSSSSSTSHBHTTHTHH
T ss_pred ChhHHHHHhCcChhcCCCCCcCCccccCccccCcccc
Confidence 47999999778999999987554333 6888876543
No 11
>TIGR03874 4cys_cytochr c-type cytochrome, methanol metabolism-related. This family represents a c-type cytochrome related to (but excluding) cytochrome c-555 of Methylococcus capsulatus. Members contain four invariant Cys residues, including two from a heme-binding motif shared with c-555, and two others.
Probab=99.58 E-value=1.1e-14 Score=92.06 Aligned_cols=80 Identities=18% Similarity=0.266 Sum_probs=58.8
Q ss_pred CHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCC---CC
Q 033758 11 NPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIP---GT 87 (112)
Q Consensus 11 ~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~ 87 (112)
..-.|+++|..+|+.||+.+|.|. ...|+|.+..-+ .+...|.+.|.++..... ..
T Consensus 32 ~~~~G~~lY~~~CAaCHG~dG~G~-~~~P~Lans~v~--------------------~s~~nli~vIl~G~~~~~~~~~~ 90 (143)
T TIGR03874 32 FTYSGYRRYHSECHVCHGPDGMGS-TYAPALKDSVKR--------------------MSYGDFLGVVANGRQNVSAAQNN 90 (143)
T ss_pred ccccHHHHHHHHHHHhCCCCCCCC-CCCCCCCCcccc--------------------CCHHHHHHHHHhCCCCCCCCCCC
Confidence 345799999999999999987653 367888632111 157789999988875322 13
Q ss_pred CC-CCCCCCCHH-HHHHHHHHHHhhc
Q 033758 88 KM-VFPGLKKPQ-DRADLIAYLKEST 111 (112)
Q Consensus 88 ~m-~~~~~l~~~-ei~~l~ayl~sl~ 111 (112)
.| +|...++|+ ||++|++||+..+
T Consensus 91 ~MPaF~~~LsD~~eIa~L~~YLR~~~ 116 (143)
T TIGR03874 91 VMPAFGDNPNVMCYLDDLYVYLRARG 116 (143)
T ss_pred CCCCccccCCcHHHHHHHHHHHHhcc
Confidence 45 698888886 9999999998754
No 12
>TIGR03045 PS_II_C550 cytochrome c-550. Members of this protein family are cytochrome c-550, the PsbV extrinsic protein of photosystem II, from both Cyanobacteria and chloroplasts. A paralog to this protein, PsbV2, is found in some species in addition to PsbV itself.
Probab=99.57 E-value=9e-15 Score=94.01 Aligned_cols=89 Identities=19% Similarity=0.237 Sum_probs=59.5
Q ss_pred CCCCHHHHHHHHHhhCcccccccCCC-CCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCC---
Q 033758 8 PPGNPKAGEKIFKTKCAQCHTVVKGA-GHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKY--- 83 (112)
Q Consensus 8 ~~~~~~~G~~lf~~~C~~CH~~~~~~-~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--- 83 (112)
..+++++|+++|+.+|+.||...... ...+++.+..+.... + . ..+.++|.+||++|...
T Consensus 47 ~~~~~~~Gk~lF~~~Ca~CH~~G~~~~~p~vgl~l~~L~~A~----~----~--------r~~v~~Lv~~iknP~~~dg~ 110 (159)
T TIGR03045 47 TEEQVKRGKRLFNTACGTCHVGGITKTNPNVGLDPEALALAT----P----P--------RDNVEALVDYMKNPTSYDGE 110 (159)
T ss_pred ChHhHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhhHHhcC----C----C--------ccCHHHHHHHHhCccccccc
Confidence 45788999999999999999532111 123444444432210 0 0 01578899999999754
Q ss_pred ----------CCCCCCCCCCCCCHHHHHHHHHHHHhhcC
Q 033758 84 ----------IPGTKMVFPGLKKPQDRADLIAYLKESTA 112 (112)
Q Consensus 84 ----------~~~~~m~~~~~l~~~ei~~l~ayl~sl~~ 112 (112)
.++..||..+.||++|+.+|++||....+
T Consensus 111 ~~~~~~hp~~k~~~~mP~~~~LsdeEL~avAaYIl~q~~ 149 (159)
T TIGR03045 111 ESIAELHPSIRSADIFPKMRNLTDEDLRLIAGHILVQPK 149 (159)
T ss_pred chhhhcccccCcccccCCcCCCCHHHHHHHHHHHHHhcc
Confidence 34566765556789999999999987643
No 13
>CHL00133 psbV photosystem II cytochrome c550; Validated
Probab=99.57 E-value=8.2e-15 Score=94.35 Aligned_cols=88 Identities=19% Similarity=0.247 Sum_probs=57.4
Q ss_pred CCCCHHHHHHHHHhhCcccccccCC-CCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCC----
Q 033758 8 PPGNPKAGEKIFKTKCAQCHTVVKG-AGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKK---- 82 (112)
Q Consensus 8 ~~~~~~~G~~lf~~~C~~CH~~~~~-~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---- 82 (112)
..+++++|+++|+.+|+.||..... ....+++.+..+.+ ..+ ...+.++|.+||++|..
T Consensus 48 t~~~~~~Gk~lF~~~CaaCH~~G~~~~~p~vgl~l~~L~~----A~~------------~r~~~~~Lv~~iknP~~ydg~ 111 (163)
T CHL00133 48 TPEQVKRGKRLFNASCGACHVGGITKTNPNVGLDPEALSL----ATP------------PRDNIEALVDYMKNPTTYDGL 111 (163)
T ss_pred CHHHHHHHHHHHHhhHHHhCCCCCCCCCCCCCCCHHHHhh----cCC------------CcccHHHHHHHHhCcccccch
Confidence 4457899999999899999962110 11233444433321 000 01157899999999977
Q ss_pred ---------CCCCCCCCCCCCCCHHHHHHHHHHHHhhc
Q 033758 83 ---------YIPGTKMVFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 83 ---------~~~~~~m~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
..++..||-.+.|||+|+.+|++||....
T Consensus 112 ~~i~~~~~~~K~~~~MPa~~~LsdeEL~aVAaYIl~q~ 149 (163)
T CHL00133 112 ESIAEIHPSIKSADIFPKMRSLTDEDLYAIAGHILLQP 149 (163)
T ss_pred HHHHHhhcccCccccCCCCCCCCHHHHHHHHHHHHhcc
Confidence 33455676336678999999999997643
No 14
>PRK13618 psbV cytochrome c-550; Provisional
Probab=99.57 E-value=1.5e-14 Score=93.20 Aligned_cols=90 Identities=22% Similarity=0.277 Sum_probs=62.3
Q ss_pred CCCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCC---
Q 033758 7 APPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKY--- 83 (112)
Q Consensus 7 ~~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--- 83 (112)
...+++++|+++|+.+|+.||. ++....+|.+..-.....+..+. ..+.+.|..|+++|...
T Consensus 47 ~s~~~~~~G~~lF~~~Ca~CH~---~G~~~~~p~~~l~~~~La~a~p~------------rd~v~~l~~yik~P~~~Dg~ 111 (163)
T PRK13618 47 LSLKQVKEGKRLFNYACAQCHA---GGVTKTNQNVGLEPEALALATPN------------RDNIEGLVDYMKNPTTYDGE 111 (163)
T ss_pred cChhhHHHHHHHHHHHHHHhcC---CCCCCCCCCcCCChhhhccCCCC------------ccCHHHHHHHHhCchhcccc
Confidence 4457889999999999999994 23456677766321111111110 01568899999999875
Q ss_pred ----------CCCCCCCCCCCCCHHHHHHHHHHHHhhc
Q 033758 84 ----------IPGTKMVFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 84 ----------~~~~~m~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
.+...||-.+.|||+|+.+|++||....
T Consensus 112 ~~~~~~h~~ik~~~~mP~~~~Lsd~eL~ava~yll~~~ 149 (163)
T PRK13618 112 EEISEIHPSIKSADIFTAMRNLTDKDLEAIAGHILVQP 149 (163)
T ss_pred chhcccccccCccccCCCCCCCCHHHHHHHHHHHHhcc
Confidence 4556676555678999999999997654
No 15
>PRK13621 psbV cytochrome c-550; Provisional
Probab=99.55 E-value=7e-15 Score=94.66 Aligned_cols=89 Identities=22% Similarity=0.441 Sum_probs=59.2
Q ss_pred CCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCC--
Q 033758 8 PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIP-- 85 (112)
Q Consensus 8 ~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-- 85 (112)
..++.+.|+++|..+|++||. +|++.+.|..+-......+..+ .. -..++|.+|+++|....+
T Consensus 62 s~~d~~~G~~lF~~~Ca~CH~---gG~n~v~p~ktL~~~~L~~a~p----~r--------d~I~~LV~~iknPms~kg~~ 126 (170)
T PRK13621 62 SPEQLTDGKQLFDSNCLNCHV---GGATLPNPNVSLSLKDLRGATP----PR--------DNIAALVAYQRDPMSYDGSE 126 (170)
T ss_pred CHHHHHhHHHHHHHHHHHhcc---CCCCCcCCCCCCCHHHHhcCCC----ch--------HHHHHHHHHhhCCCCCCccc
Confidence 456789999999999999995 3445666643321110000000 00 145789999999998765
Q ss_pred ---CCCCCCCCCCCHHHHHHHHHHHHhhc
Q 033758 86 ---GTKMVFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 86 ---~~~m~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
+..|+....|+++|+++|++||....
T Consensus 127 ~~~~~~mps~~~LSdeEL~aIAaYLL~qA 155 (170)
T PRK13621 127 ESYGCRQVPEDWMTDEELQNLAAFILRAA 155 (170)
T ss_pred ccccccCCccCCCCHHHHHHHHHHHHhhh
Confidence 45565456678999999999997653
No 16
>TIGR03046 PS_II_psbV2 photosystem II cytochrome PsbV2. Members of this protein family are PsbV2, a protein closely related cytochrome c-550 (PsbV), a protein important to the water-splitting and oxygen-evolving activity of photosystem II. Mutant studies in Thermosynechococcus elongatus showed PsbV2 can partially replace PsbV, from which it appears to have arisen first by duplication, then by intergenic recombination with a different gene.
Probab=99.54 E-value=9.5e-15 Score=93.21 Aligned_cols=89 Identities=21% Similarity=0.408 Sum_probs=57.2
Q ss_pred CCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCC--
Q 033758 8 PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIP-- 85 (112)
Q Consensus 8 ~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-- 85 (112)
..++..+|+++|+.+|+.||.- |++.+.|...-......+..+ .. -..+.|.+|+++|....+
T Consensus 51 s~~d~~~G~~lF~~~Ca~CH~g---G~n~~~p~~~L~~~~L~~atp----~R--------d~I~~Lv~~iknP~s~kG~~ 115 (155)
T TIGR03046 51 TPEQLTDGKNLFESNCLNCHVG---GATLPNPNVSLSLKDLKGATP----PR--------DTIQSLVAYQRDPMSYDGSE 115 (155)
T ss_pred CHHHHHhHHHHHHHHHHHhccC---CCCCcCCCCCCCHHHHhcCCC----ch--------HHHHHHHHHhhCCcccCccc
Confidence 3457899999999999999963 334444422211110000000 00 024689999999998765
Q ss_pred ---CCCCCCCCCCCHHHHHHHHHHHHhhc
Q 033758 86 ---GTKMVFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 86 ---~~~m~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
+..|+....|+|+|+++|++||....
T Consensus 116 ~~~~~~mp~~~~LsdeEL~aIAaYLl~qa 144 (155)
T TIGR03046 116 ESYGCRPVPEDWMDDEEVENLAAFILRAA 144 (155)
T ss_pred ccccccCCcccCCCHHHHHHHHHHHHHhh
Confidence 34565556678999999999997653
No 17
>COG2863 Cytochrome c553 [Energy production and conversion]
Probab=99.52 E-value=1.2e-14 Score=89.14 Aligned_cols=80 Identities=26% Similarity=0.342 Sum_probs=60.7
Q ss_pred CCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCC-CCCC
Q 033758 8 PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKK-YIPG 86 (112)
Q Consensus 8 ~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~ 86 (112)
+..+++.|+.+|.+.|+.||+.++.......|.|.++ +.++|...|++-+. ..++
T Consensus 20 a~~~a~~G~~~~~~~Ca~CHG~~g~~~~~~~P~Lagq------------------------~~~yl~~~L~a~k~g~r~~ 75 (121)
T COG2863 20 AAADAALGKALAAQSCAACHGADGNSPAPGYPKLAGQ------------------------SEAYLEKQLKAYKDGKRPG 75 (121)
T ss_pred hhhhHHHHHHhhcchhhhccCCCCCCccCCCCCcCCC------------------------CHHHHHHHHHHHHcCCCCc
Confidence 5678899999999889999999987666667777764 46677777753332 2234
Q ss_pred CCC-CCCCCCCHHHHHHHHHHHHhhc
Q 033758 87 TKM-VFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 87 ~~m-~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
..| .....|||+||.+|++|+.+++
T Consensus 76 ~vM~~~a~~LsD~Di~~lAa~~a~~~ 101 (121)
T COG2863 76 PVMNAIASGLSDEDIADLAAYYAAQK 101 (121)
T ss_pred chHHHHHHhCCHHHHHHHHHHHHhCC
Confidence 466 5666678999999999998875
No 18
>PRK13620 psbV cytochrome c-550; Provisional
Probab=99.52 E-value=4.4e-14 Score=93.14 Aligned_cols=89 Identities=20% Similarity=0.201 Sum_probs=64.4
Q ss_pred CCCCCHHHHHHHHHhhCcccccccCC-C-CCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCC
Q 033758 7 APPGNPKAGEKIFKTKCAQCHTVVKG-A-GHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYI 84 (112)
Q Consensus 7 ~~~~~~~~G~~lf~~~C~~CH~~~~~-~-~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 84 (112)
...+++++|+++|+..|+.|| +.|. . +..++|+|+.+..-. +. ..+.+.|..||++|..+.
T Consensus 99 fS~eq~~~GkqLF~~~Ca~CH-VgG~Tktnp~vgpdLt~LaaAt----pp------------Rdn~e~Lv~wLkdP~syd 161 (215)
T PRK13620 99 LSLKQVAEGKQLFAYACGQCH-VGGITKTDPNVGLDPEALALAT----PP------------RDSVESLVDYLHNPTTYD 161 (215)
T ss_pred CCHHHHHHHHHHHHhhhhhcc-CCCCCCCCCCCCCCHHHHhccC----CC------------CCCHHHHHHHHhCccccC
Confidence 345678999999998999999 5431 1 235677777432111 00 026789999999999988
Q ss_pred C-------------CCCCCCCCCCCHHHHHHHHHHHHhhcC
Q 033758 85 P-------------GTKMVFPGLKKPQDRADLIAYLKESTA 112 (112)
Q Consensus 85 ~-------------~~~m~~~~~l~~~ei~~l~ayl~sl~~ 112 (112)
+ +..||-.+.+||+|+.+|+.|+...+|
T Consensus 162 g~~siae~HPs~~s~d~mP~~r~LtdedL~aIa~~IL~qpk 202 (215)
T PRK13620 162 GEREISELHPSTKSTDIFPKMRNLTEDDLVAISGHILLQPK 202 (215)
T ss_pred CcchhhhcCccccccccccccCCCCHHHHHHHHHHHhcccc
Confidence 7 677875566789999999999976543
No 19
>PRK13697 cytochrome c6; Provisional
Probab=99.52 E-value=6.1e-14 Score=85.55 Aligned_cols=83 Identities=22% Similarity=0.346 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCC
Q 033758 8 PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGT 87 (112)
Q Consensus 8 ~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 87 (112)
..++...|+.+|..+|+.||+.+. .....+|.|.... +...+ .++.+.+...++++.. .
T Consensus 24 ~a~~~~~G~~ly~~~C~~CHg~g~-~~~~~~p~l~~~~---------------~~~~~-~~~~~~l~~~i~~g~~----~ 82 (111)
T PRK13697 24 LAADAANGEQVFSANCASCHAGGK-NLVNAGKTLKKAD---------------LEKYG-MYSLEAITAQVTNGKN----A 82 (111)
T ss_pred cccCHHHHHHHHHHHHHHhCCCCC-CCCCCCCCCCHHH---------------HHhcC-CCCHHHHHHHHHcCCC----C
Confidence 346788999999989999999532 1122345544210 00001 1356778888888753 3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhc
Q 033758 88 KMVFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 88 ~m~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
|++|.+.+|++|+++|++||.++.
T Consensus 83 Mp~~~~~ls~~di~~l~~Yi~~~~ 106 (111)
T PRK13697 83 MPAFKDRLSPDQIEDVAAYVLEQA 106 (111)
T ss_pred CCCCcCCCCHHHHHHHHHHHHHHH
Confidence 446777789999999999998864
No 20
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.
Probab=99.51 E-value=9.4e-14 Score=97.33 Aligned_cols=82 Identities=18% Similarity=0.246 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHhhCcccccccCCCCCCC-CCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCC
Q 033758 10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQ-GPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTK 88 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~-gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 88 (112)
..+.+|+++|...|++||+.++.+.... .|.|.+..-.+ .. +.+.+.+.++++.. +.|
T Consensus 201 ~~~~~G~~lf~~~Ca~CHG~~G~G~~~~gaP~L~~~~~~y---------~~---------~~~~i~~~i~~G~~---g~M 259 (285)
T TIGR00782 201 ALAAKGQELFADNCTTCHGEDGKGLQELGAPNLTDDVWLY---------GG---------DLKTITTTITNGRG---GVM 259 (285)
T ss_pred hHHHHHHHHHhccchhhCCCCCCCCCCCCCCCCCcchhhc---------CC---------CHHHHHHHHHhCCC---CCC
Confidence 4568999999989999999987654333 58887632111 00 34566677776642 334
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcC
Q 033758 89 MVFPGLKKPQDRADLIAYLKESTA 112 (112)
Q Consensus 89 m~~~~~l~~~ei~~l~ayl~sl~~ 112 (112)
++|...|+++||++|++||.+|+.
T Consensus 260 p~~~~~Ls~~ei~~La~Yv~sL~~ 283 (285)
T TIGR00782 260 PAWGPRLSEAQIKALAAYVHSLGG 283 (285)
T ss_pred CCccccCCHHHHHHHHHHHHHhcC
Confidence 468888899999999999999863
No 21
>PRK14487 cbb3-type cytochrome c oxidase subunit II; Provisional
Probab=99.45 E-value=2.5e-13 Score=90.46 Aligned_cols=82 Identities=22% Similarity=0.363 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHh-hCccccc--ccCC------------------------CCCCCCCCCCCccCCCCCCCCCCccchhcc
Q 033758 10 GNPKAGEKIFKT-KCAQCHT--VVKG------------------------AGHKQGPNLNGLFGRQSGTTPGYSYSAANK 62 (112)
Q Consensus 10 ~~~~~G~~lf~~-~C~~CH~--~~~~------------------------~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~ 62 (112)
....+|+.+|.+ .|..||+ +++- |....||+|+++.+|.
T Consensus 49 ~lel~Gr~iyi~eGC~~CHsQ~VR~~~~e~~r~G~~S~a~e~~yd~P~lwGs~RtGPDLt~vG~R~-------------- 114 (217)
T PRK14487 49 ALELAGRDIYIREGCYNCHSQMIRPFRAETERYGHYSLAGESVYDHPFLWGSKRTGPDLARVGGRY-------------- 114 (217)
T ss_pred HHHHHHHHHHHhcChhhccCccccCCchhhhhcCcccccchhhcccccccCCCCCCcchhhhhccC--------------
Confidence 345789999976 5999998 4431 1134566666655443
Q ss_pred ccceeeCHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHH--HHHHHHHhhc
Q 033758 63 GMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRA--DLIAYLKEST 111 (112)
Q Consensus 63 ~~~~~~~~~~l~~~l~~~~~~~~~~~m~~~~~l~~~ei~--~l~ayl~sl~ 111 (112)
+.+++..+|.+|+...|++.||-..-|.+++++ +|++||++|.
T Consensus 115 ------s~~w~~~hl~nP~~v~PgS~MPay~~L~~~~ld~~~~~~~l~~l~ 159 (217)
T PRK14487 115 ------SDEWHRNHLINPRSVVPESNMPAYPWLAENDLDGTDTAEKMTALR 159 (217)
T ss_pred ------CHHHHHHHHhCcccCCCCCCCCCCcccccccCCHHHHHHHHHHhh
Confidence 688999999999999999999733445577766 9999999885
No 22
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.
Probab=99.43 E-value=3.5e-13 Score=94.46 Aligned_cols=81 Identities=27% Similarity=0.281 Sum_probs=56.0
Q ss_pred HHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCC------C
Q 033758 12 PKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYI------P 85 (112)
Q Consensus 12 ~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~------~ 85 (112)
...|+++|..+|+.||+.++.+. ...|+|.+..-.. + .+.+.+...++++.... .
T Consensus 107 ~~~G~~lf~~~Ca~CHG~~g~G~-~g~P~L~~~~~~~-g-----------------~~~~~i~~~i~~G~~~~~~~~~~~ 167 (285)
T TIGR00782 107 RNAGAAIFRTWCAQCHGSGAGGA-KGFPNLLDNDWLW-G-----------------GTLEGIHTTIKHGIRDPDDGDTYV 167 (285)
T ss_pred HHHHHHHHHHHhHHhCCCCCCCC-CCCCCCCCCcccc-C-----------------CCHHHHHHHHHhCccCcccCCcCC
Confidence 47899999999999999986542 3347776421100 0 04567777777765311 1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhc
Q 033758 86 GTKMVFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 86 ~~~m~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
+.|++|...|+++||++|++||++++
T Consensus 168 ~~Mp~~~~~LsdeeI~aVaaYv~sl~ 193 (285)
T TIGR00782 168 GEMPAFGPLLEEADIKDVASYVMSLS 193 (285)
T ss_pred CCCCccccccChHHHHHHHHHHHHhc
Confidence 23446877889999999999999886
No 23
>PRK13619 psbV cytochrome c-550; Provisional
Probab=99.42 E-value=3.2e-13 Score=85.78 Aligned_cols=89 Identities=22% Similarity=0.323 Sum_probs=60.4
Q ss_pred CCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCC---
Q 033758 8 PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYI--- 84 (112)
Q Consensus 8 ~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--- 84 (112)
..+++++|+++|+.+|+.||.. |.+.++|.+.--.....+..|.. .+-+.|.+|+++|....
T Consensus 47 s~~d~~~GkklF~~~Ca~CH~g---G~nk~~Pnl~L~~~~L~~atP~R------------dnV~aLVdymk~PtsyDG~~ 111 (160)
T PRK13619 47 TSKQITNGQRLFVQECTQCHLQ---GKTKTNNNVSLGLEDLAGAEPPR------------DNVLALVDYLKHPTSYDGED 111 (160)
T ss_pred CHHHHHHHHHHHHHHHHHcccC---CCCCcCCCCCcCHHHHHhcCCCc------------ccHHHHHHHHhCCcccccch
Confidence 4568899999999999999985 45778887763211111111211 15678999999998762
Q ss_pred ------C----CCCCCCCCCCCHHHHHHHHHHHHhhc
Q 033758 85 ------P----GTKMVFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 85 ------~----~~~m~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
| ...||-..-|||+|+.+|++|+...+
T Consensus 112 ~~a~~hpsi~~~di~P~mr~LtdedL~~iAg~IL~~p 148 (160)
T PRK13619 112 DYSELHPNVSRPDIFPELRNFTEDDLYDVAGYMLVAP 148 (160)
T ss_pred hhhhhcccccccccccccCCCCHHHHHHHHHHHHhcc
Confidence 1 13344334478999999999997544
No 24
>PRK14486 putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional
Probab=99.38 E-value=2.5e-12 Score=90.31 Aligned_cols=79 Identities=16% Similarity=0.315 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033758 10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM 89 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m 89 (112)
++..+|+++|+.+|+.||+.++.+ ..+|.+....... ...+.+...|.++... ..|+
T Consensus 213 ~~~~~G~~ly~~~Ca~CHg~~g~G--~~gp~p~~~~~~~-------------------~~~~~~~~~I~~G~~~--~~MP 269 (294)
T PRK14486 213 AAIAKGKALYDANCAACHGDEAQG--QEGVALNDIDDGD-------------------LPDAAYFGMIKGGSDA--KGMP 269 (294)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCC--CCCCCccccccCC-------------------CcHHHHHHHHHcCCCc--CCCC
Confidence 446899999999999999987644 3344443321100 0234466667776542 1344
Q ss_pred CCCCCCCHHHHHHHHHHHHhhc
Q 033758 90 VFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 90 ~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
+|...|+++|+++|++||+++.
T Consensus 270 ~f~~~Lsdeei~~LaaYV~sl~ 291 (294)
T PRK14486 270 GFGGDLSDDDIWAIVAYIRSQK 291 (294)
T ss_pred cccccCCHHHHHHHHHHHHhcc
Confidence 6877789999999999999985
No 25
>PRK13622 psbV cytochrome c-550; Provisional
Probab=99.28 E-value=1.3e-11 Score=80.44 Aligned_cols=90 Identities=22% Similarity=0.343 Sum_probs=53.7
Q ss_pred CCCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCC--
Q 033758 7 APPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYI-- 84 (112)
Q Consensus 7 ~~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-- 84 (112)
...++...|+++|..+|+.||.. |.+.+.|...-......+..++. .+.+.|..++++|....
T Consensus 57 ~s~~~~~~G~~lF~~~Ca~CH~~---G~ni~~P~~tLk~~aL~~a~p~r------------dnv~AIv~yLk~p~tYdg~ 121 (180)
T PRK13622 57 FTEAQLAKGKKLFNRACAQCHVG---GQTYPNPDVSLKLSDLEGATPPR------------DNVLAIVDYIKNPVTYDGV 121 (180)
T ss_pred CCHHHHHHHHHHHHhhhHHhccC---CCCCcCCCcccCHHHHcCCCCCc------------ccHHHHHHHHhcccccCCc
Confidence 44456789999999899999954 23334443332111111111100 14567888998887433
Q ss_pred -------CC----CCCCCCCCCCHHHHHHHHHHHHhhc
Q 033758 85 -------PG----TKMVFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 85 -------~~----~~m~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
|. +.||-.+.|||+||++|++||....
T Consensus 122 ~~~~e~~p~~~~~~~~p~~~~LsdeEI~~VA~yIl~qa 159 (180)
T PRK13622 122 ESLLEYHPNTQLLSEYPRLRNLTDEDLKLIAGYILVQA 159 (180)
T ss_pred cchhhccccchhccccccccCCCHHHHHHHHHHHHhCc
Confidence 11 1233224688999999999997654
No 26
>COG2010 CccA Cytochrome c, mono- and diheme variants [Energy production and conversion]
Probab=99.25 E-value=5.3e-12 Score=80.36 Aligned_cols=34 Identities=32% Similarity=0.559 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHhhCccccccc--CCCCCCCCCCCCC
Q 033758 10 GNPKAGEKIFKTKCAQCHTVV--KGAGHKQGPNLNG 43 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~--~~~~~~~gP~l~~ 43 (112)
.....|+++|..+|+.||+.+ +.+....+|.|.+
T Consensus 49 ~~~~~G~~~f~~~C~~CHg~~~~g~~~~~~~~~l~~ 84 (150)
T COG2010 49 AARGAGLALFLGNCAACHGPNLGGAGPLLDGPALAG 84 (150)
T ss_pred HHHHHHHHHhcccchhccCCCCCCCCCcCcchhhhC
Confidence 357899999999999999987 2222233565554
No 27
>COG3258 Cytochrome c [Energy production and conversion]
Probab=99.21 E-value=4.5e-11 Score=81.54 Aligned_cols=88 Identities=22% Similarity=0.263 Sum_probs=53.4
Q ss_pred CCCCCHHHHHHHHHhhCcccccccCCCC--------CCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHh
Q 033758 7 APPGNPKAGEKIFKTKCAQCHTVVKGAG--------HKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLL 78 (112)
Q Consensus 7 ~~~~~~~~G~~lf~~~C~~CH~~~~~~~--------~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 78 (112)
.-+.++.+|++||..+|+.||+.+|.|. ....|+|++--.-..+. .+ ..-..+.+||+
T Consensus 157 ~~aadp~rG~kly~eqCa~CHg~~G~G~k~~~~~~~~y~fPpLwG~dSfn~Ga----gM----------ari~t~A~Fi~ 222 (293)
T COG3258 157 LKAADPVRGKKLYAEQCAACHGADGQGLKNDDEQGAGYLFPPLWGPDSFNDGA----GM----------ARINTLARFIK 222 (293)
T ss_pred ccCCCchhHHHHHHHHHHHhcCCCCCccccCcCCCcceecCcccCCcccCCcc----ch----------hhHHHHHHHHH
Confidence 3467999999999999999999987542 22457776521111110 00 01245667766
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhc
Q 033758 79 NPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 79 ~~~~~~~~~~m~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
..... ..-.-..+|||+|-+||++|+.+++
T Consensus 223 ~nMP~---g~~~~~P~Lsd~dA~DiAay~~~~p 252 (293)
T COG3258 223 ANMPY---GFSGTNPILSDQDAWDIAAYVNSQP 252 (293)
T ss_pred hcCCC---CcCccCCccChHHHHHHHHHHcCCC
Confidence 43111 0000123489999999999998764
No 28
>PF14495 Cytochrom_C550: Cytochrome c-550 domain; PDB: 3ARC_V 1IZL 3A0H_V 3A0B_v 1E29_A 1F1C_B 1S5L_V 4FBY_i 3PRR_V 3PRQ_V ....
Probab=99.16 E-value=1.4e-11 Score=76.05 Aligned_cols=87 Identities=26% Similarity=0.398 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCC--
Q 033758 9 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPG-- 86 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-- 86 (112)
.+++++|++||+..|+.||.- |.....|...--.....+..|.. .+-+.|++|+++|..+...
T Consensus 22 ~~q~~~GkrLF~~~C~~CH~G---G~TktNpnV~L~le~L~~AtPpR------------DNi~~LVdYmk~PtsYDG~~~ 86 (135)
T PF14495_consen 22 PEQLKRGKRLFNASCAQCHVG---GITKTNPNVSLSLEDLAGATPPR------------DNIEALVDYMKNPTSYDGEES 86 (135)
T ss_dssp HHHHHHHHHHHHHHTHHHHGG---GCBTTSTTSBSSHHHHHTSSS--------------SSHHHHHHHHHS-B-TTSSSB
T ss_pred HHHHHHHHHHHHHHHHhhccC---CcccCCCCCCcCHHHHccCCCCc------------ccHHHHHHHhhCCCCcCCchh
Confidence 356799999999999999963 33344444332111111111211 1677899999999875421
Q ss_pred -----------CCCCCCCCCCHHHHHHHHHHHHhh
Q 033758 87 -----------TKMVFPGLKKPQDRADLIAYLKES 110 (112)
Q Consensus 87 -----------~~m~~~~~l~~~ei~~l~ayl~sl 110 (112)
...|-..-|+|+|+.+|++||...
T Consensus 87 i~e~hp~~~s~di~p~mr~ltdddL~~iAg~IL~~ 121 (135)
T PF14495_consen 87 ISELHPSIKSADIFPKMRNLTDDDLYAIAGYILRQ 121 (135)
T ss_dssp GTTTS-STTCTTTSGGGTS--HHHHHHHHHHHHHH
T ss_pred HHHhCcCcccchhhHhhcCCCHHHHHHHHHHHHhc
Confidence 111222346899999999999643
No 29
>TIGR00781 ccoO cytochrome c oxidase, cbb3-type, subunit II. This model describes the monoheme subunit of the cbb3-type cytochrome oxidase, found in a subset of Proteobacterial species. Species having this protein also have CcoN (subunit I, containing copper and two heme groups), CcoP (subunit III, containing two hemes), and CcoQ (essential for incorporation of the prosthetic groups).
Probab=99.13 E-value=1.7e-10 Score=77.62 Aligned_cols=81 Identities=25% Similarity=0.404 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHh-hCccccc--ccCC------------------------CCCCCCCCCCCccCCCCCCCCCCccchhcc
Q 033758 10 GNPKAGEKIFKT-KCAQCHT--VVKG------------------------AGHKQGPNLNGLFGRQSGTTPGYSYSAANK 62 (112)
Q Consensus 10 ~~~~~G~~lf~~-~C~~CH~--~~~~------------------------~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~ 62 (112)
....+|+.+|.+ .|..||+ +++- |....||+|+++.+|.
T Consensus 48 ~lel~Gr~iyi~eGC~~CHsQ~VR~~~~e~~ryG~~S~a~e~~yd~p~lwGs~RtGPDLt~vG~R~-------------- 113 (232)
T TIGR00781 48 PLELAGRDIYIREGCYHCHSQMIRPFRAEVERYGHYSLAGESMYDHPFQWGSKRTGPDLARVGGRY-------------- 113 (232)
T ss_pred HHHHHHHHHHHhcChhhcccccccCcchhhhhcCcccccchhhcccccccCCCCcCcCcccccccC--------------
Confidence 345789999976 5999997 4420 1234566666655543
Q ss_pred ccceeeCHHHHHHHHhCCCCCCCCCCCC-CCCCC-CHHHHHHHHHHHHhh
Q 033758 63 GMAVIWEEKTLYDYLLNPKKYIPGTKMV-FPGLK-KPQDRADLIAYLKES 110 (112)
Q Consensus 63 ~~~~~~~~~~l~~~l~~~~~~~~~~~m~-~~~~l-~~~ei~~l~ayl~sl 110 (112)
+.+|+..+|.+|+...|++.|| |.-+. .+-+..++.+-++++
T Consensus 114 ------s~~wh~~hl~nPr~v~PgSiMP~y~~L~~~~ld~~~~~~~~~~~ 157 (232)
T TIGR00781 114 ------SDEWHVKHLFDPRSVVPESIMPAYKHLATKKVDVDTAYAEAKTQ 157 (232)
T ss_pred ------CHHHHHHHHhCccccCCCCCCCCCcccccccCCHHHHHHHHHHH
Confidence 6789999999999999999996 43232 122333555555554
No 30
>PRK14486 putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional
Probab=99.11 E-value=2.3e-10 Score=80.54 Aligned_cols=98 Identities=15% Similarity=0.316 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHh-hCcccccccCCCCCCCCCCCCCccCCCCCC------CC----CCccchhccccceeeCHHHHHHHHh
Q 033758 10 GNPKAGEKIFKT-KCAQCHTVVKGAGHKQGPNLNGLFGRQSGT------TP----GYSYSAANKGMAVIWEEKTLYDYLL 78 (112)
Q Consensus 10 ~~~~~G~~lf~~-~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~l~~~l~ 78 (112)
..+.+|+.+|.. .|..||+.- ......++.. +++.+.. .+ .-...+++...|..++.+|+..+|.
T Consensus 49 ~~~~~G~~~y~~~gC~~CH~q~---vr~~~~~~~~-~g~~s~~~~~~~~~p~~~g~~r~GPDL~~vG~r~~~~w~~~~l~ 124 (294)
T PRK14486 49 PLELAGRDVYQREGCVNCHTQT---VRPLKSEVVR-YGQYSKAGEFAYDHPFLWGSKRTGPDLARIGGKYPDAWHYAHFE 124 (294)
T ss_pred HHHHHHHHHHHHcCchhhcCcc---ccCCcccccc-cCCCCcchhhhccccccccCCCCCCchhhhcccCCHHHHHHHHh
Confidence 345799999987 599999831 0000111111 1111000 00 0011334444455557899999999
Q ss_pred CCCCCCCCCCCC-CC----CCC----------------C---------HHHHHHHHHHHHhhc
Q 033758 79 NPKKYIPGTKMV-FP----GLK----------------K---------PQDRADLIAYLKEST 111 (112)
Q Consensus 79 ~~~~~~~~~~m~-~~----~~l----------------~---------~~ei~~l~ayl~sl~ 111 (112)
+|+...|++.|| |. ..+ + ..|+.+|++||..|.
T Consensus 125 ~P~~~~p~s~MP~~~~l~~~~~~~~~~~~~~~~~~~py~~~~~~~~~~~~e~~AlvAYl~~L~ 187 (294)
T PRK14486 125 DPQAVVPRSNMPAYAFLKGKPLDAALTQRKMRALGFPYTDADLAALAGKTEMDAMVAYMQSLG 187 (294)
T ss_pred CcccCCCCCCCCCCHHHhhccCcHHHHHHhhhhcCCCCCHHHHHHhcccHHHHHHHHHHHHhc
Confidence 999999999885 32 111 1 237789999999875
No 31
>COG4654 Cytochrome c551/c552 [Energy production and conversion]
Probab=98.90 E-value=1.8e-09 Score=63.88 Aligned_cols=84 Identities=18% Similarity=0.257 Sum_probs=56.0
Q ss_pred CCCCHHHHHHHHHhh-CcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCC
Q 033758 8 PPGNPKAGEKIFKTK-CAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPG 86 (112)
Q Consensus 8 ~~~~~~~G~~lf~~~-C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 86 (112)
...++++|+.+|.++ |..||.++- ..+||++..+...+.+... ....|...++++....-+
T Consensus 19 ga~~a~~~~aif~qkgC~~CHq~~v---ktVGPS~kdIAakYag~~~---------------~~~kl~q~i~~g~~g~wg 80 (110)
T COG4654 19 GAADAEDGKAIFSQKGCVACHQPDV---KTVGPSYKDIAAKYAGKAG---------------ALAKLAQGIKPGGVGVWG 80 (110)
T ss_pred hccchhhhHHHHHhccchhhccccc---cccCccHHHHHHHHccchh---------------HHHHHHHhccccCcCccc
Confidence 357889999999986 999999863 6789999988766655422 344555666655544322
Q ss_pred -CCCCCCCCCCHHHHHHHHHHHHh
Q 033758 87 -TKMVFPGLKKPQDRADLIAYLKE 109 (112)
Q Consensus 87 -~~m~~~~~l~~~ei~~l~ayl~s 109 (112)
-.||-+..++|.+...++.||..
T Consensus 81 ~ipMppqp~~sd~~a~~~~kwvl~ 104 (110)
T COG4654 81 PIPMPPQPAISDADAKTLAKWVLA 104 (110)
T ss_pred cCCCCCcccccchHHHHHHHHHHh
Confidence 24543434457777777777653
No 32
>TIGR03791 TTQ_mauG tryptophan tryptophylquinone biosynthesis enzyme MauG. Members of this protein family are the tryptophan tryptophylquinone biosynthesis (TTQ) enzyme MauG, as found in Methylobacterium extorquens and related species. This protein is required to complete the maturation of the TTQ cofactor in the methylamine dehydrogenase light (beta) chain.
Probab=98.72 E-value=7.1e-08 Score=67.94 Aligned_cols=105 Identities=21% Similarity=0.277 Sum_probs=52.4
Q ss_pred CCCCCHHHHHHHHHh--hCcccccccC--C-CCCCCC-CC-CC-CccCCCC-C-CCCCCcc-chhccc---------cce
Q 033758 7 APPGNPKAGEKIFKT--KCAQCHTVVK--G-AGHKQG-PN-LN-GLFGRQS-G-TTPGYSY-SAANKG---------MAV 66 (112)
Q Consensus 7 ~~~~~~~~G~~lf~~--~C~~CH~~~~--~-~~~~~g-P~-l~-~~~~~~~-~-~~~~~~~-~~~~~~---------~~~ 66 (112)
....++.+|..||.. +|+.||...- + .-..+| |. +. +...... . ....+.| ++.++. .|.
T Consensus 154 als~~e~~G~~LF~~k~~C~~CH~g~~ftd~~f~~iG~~~~~d~G~~~~~~~~~~~~~~~FrtPsLRnV~~taPY~HdG~ 233 (291)
T TIGR03791 154 AIGADAKRGFALFKGKAGCAACHSSWRFTDDSFHDIGLKAGLDLGRGAFAPPQVTAMQHAFKTPSLRDLPMEGPFMHDGQ 233 (291)
T ss_pred cCCHHHHHHHHHhcCCCCCCCCCCCCCcCCchHHhcCCCCccCCCcccccccccccccCcccCccccccccCCCCCCCCC
Confidence 345678999999983 5999997321 0 001122 11 10 1100000 0 0001122 233332 244
Q ss_pred eeCHHHHHHHHhCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHhhc
Q 033758 67 IWEEKTLYDYLLNPKKYIPGTKMVF-PGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~~~~~m~~-~~~l~~~ei~~l~ayl~sl~ 111 (112)
..+.+++..+...+....++...-. .--||++|+++||+||++|+
T Consensus 234 ~~tL~evv~~y~~~g~~~~~~~~~~~~~~Lt~~E~~dLvaFL~tLt 279 (291)
T TIGR03791 234 LGSLDAVIDHYEKGGEKRPSISAEMKPFELSEREREDLIAFIETLD 279 (291)
T ss_pred cCCHHHHHHHHHccCccccccccccccCCCCHHHHHHHHHHHHhcC
Confidence 4566667776655433222111000 11468999999999999996
No 33
>PF02433 FixO: Cytochrome C oxidase, mono-heme subunit/FixO; InterPro: IPR003468 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO) []. Cytochrome cbb3 oxidases are required both to support symbiotic nitrogen fixation, whilst ensuring that the oxygen-labile nitrogenase is not compromised. Cytochrome cbb3 oxidases consist of four subunits: FixN (or CcoN), FixO (or CcoO), FixP (or CcoP) and FixQ (or CcoQ). The catalytic core is comprised of subunits FixN, FixO and FixP, where FixN acts as the catalytic subunit, and Fix O and FixP are membrane-bound mono- and di-haem cytochromes c, respectively. The FixQ subunit protects the core complex in the presence of oxygen from proteolytic degradation []. This entry represents the mono-haem FixO subunit.
Probab=98.46 E-value=7.1e-07 Score=60.21 Aligned_cols=97 Identities=23% Similarity=0.345 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHhh-CcccccccCCCCCCCCCCCCCccCCCCCCC------C----CCccchhccccceeeCHHHHHHHHh
Q 033758 10 GNPKAGEKIFKTK-CAQCHTVVKGAGHKQGPNLNGLFGRQSGTT------P----GYSYSAANKGMAVIWEEKTLYDYLL 78 (112)
Q Consensus 10 ~~~~~G~~lf~~~-C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~~l~~~l~ 78 (112)
....+|+.+|... |..||+-- ......+... +++++... | .-+..+++...|...+.+|...-+.
T Consensus 48 ~lel~GR~iYi~eGC~~CHSQ~---VRp~~~e~~R-yG~yS~a~e~~yd~P~lwGSkRtGPDLarvG~r~s~~Wh~~Hl~ 123 (226)
T PF02433_consen 48 PLELAGRDIYIREGCYYCHSQM---VRPFRAEVER-YGRYSVAGEYVYDHPFLWGSKRTGPDLARVGGRYSDDWHLAHLY 123 (226)
T ss_pred HHHHhHHHHHHHcCchhccccc---CCCchhhhhh-cCCCCchhhhhccCccccCCCCcCccHHHHhccCChHHHHHHhh
Confidence 4567899999875 99999832 1111111111 22221110 0 0123445555566668899999999
Q ss_pred CCCCCCCCCCCC-CCCCC-CHHHHHHHHHHHHhh
Q 033758 79 NPKKYIPGTKMV-FPGLK-KPQDRADLIAYLKES 110 (112)
Q Consensus 79 ~~~~~~~~~~m~-~~~~l-~~~ei~~l~ayl~sl 110 (112)
+|+...|++.|| |.-+. .+.+...+.+.++.+
T Consensus 124 ~Pr~v~p~SiMP~Y~~L~~~~~d~~~~~~~~~~l 157 (226)
T PF02433_consen 124 NPRSVVPGSIMPSYPWLFENKLDGEDIQAKMKAL 157 (226)
T ss_pred ChHhhCCCCCCCCChhHhhccCcHHHHHHHHHHH
Confidence 999999999996 43222 122444555555544
No 34
>PRK14485 putative bifunctional cbb3-type cytochrome c oxidase subunit I/II; Provisional
Probab=98.27 E-value=3e-06 Score=65.95 Aligned_cols=97 Identities=13% Similarity=0.220 Sum_probs=58.1
Q ss_pred CCHHHHHHHHHhh-CcccccccCCCCCCCCCCCCCccCCCCCCCC----------CCccchhccccceeeCHHHHHHHHh
Q 033758 10 GNPKAGEKIFKTK-CAQCHTVVKGAGHKQGPNLNGLFGRQSGTTP----------GYSYSAANKGMAVIWEEKTLYDYLL 78 (112)
Q Consensus 10 ~~~~~G~~lf~~~-C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~l~ 78 (112)
..+.+||.+|.+. |..||+-- .....++... +++++...+ .-+..||+.+.|...++++-..-+.
T Consensus 535 ~~~~~Gr~iyi~egC~~CHsq~---vr~~~~e~~r-~G~~s~~~e~~~d~p~~~Gs~rtgpdl~~~g~~~~~~wh~~hl~ 610 (712)
T PRK14485 535 PLELEGRDLYIREGCYNCHSQM---IRPFRSEVER-YGEYSKAGEFVYDHPFLWGSKRTGPDLAREGGKYPDSWHYNHME 610 (712)
T ss_pred hHHHhhHHHHHHcCcccccccc---CCCCchhHHh-cCCCCchhhhhccCCcccCCCCcCcchhhhcCCCChHHHHHHhc
Confidence 3468999999875 99999831 1111222111 222211100 0123445555566667788999999
Q ss_pred CCCCCCCCCCCC-C----CCCCCHHHHHHHHHHHHhh
Q 033758 79 NPKKYIPGTKMV-F----PGLKKPQDRADLIAYLKES 110 (112)
Q Consensus 79 ~~~~~~~~~~m~-~----~~~l~~~ei~~l~ayl~sl 110 (112)
||+...|++.|| | ...++.+++.+-+..++.+
T Consensus 611 ~p~~~~p~s~mp~y~~l~~~~~~~~~~~~~~~~~~~~ 647 (712)
T PRK14485 611 DPQSTSPGSIMPAYPWLLENELDISDTPAKIKAMQTL 647 (712)
T ss_pred CchhcCCCCCCCCChhhhhCCCChHHHHHHHHHHHhc
Confidence 999999999886 3 3445556666666666654
No 35
>COG2857 CYT1 Cytochrome c1 [Energy production and conversion]
Probab=98.22 E-value=6e-06 Score=57.12 Aligned_cols=44 Identities=34% Similarity=0.323 Sum_probs=34.7
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcC
Q 033758 69 EEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112 (112)
Q Consensus 69 ~~~~l~~~l~~~~~~~~~~~m~~~~~l~~~ei~~l~ayl~sl~~ 112 (112)
.+..+..+|++|....+++-|+-...++|++.++|++||..+.+
T Consensus 171 ~~~~~~~~i~~p~~~k~~~~m~~~~~~tdq~~~dlvaYL~~~~e 214 (250)
T COG2857 171 FEGELGIFIADPLKDKPGTYMPGNPALTDQEVKDLVAYLKWAAE 214 (250)
T ss_pred chhhHhhhccCccccCCcCCCCCChhhHHHHHHHHHHHHHHccC
Confidence 34458899999999988887763334569999999999988753
No 36
>PF09086 DUF1924: Domain of unknown function (DUF1924); InterPro: IPR015170 This entry is found in a set of bacterial proteins, including Cytochrome c-type protein. It is functionally uncharacterised. ; PDB: 1DW2_C 1DW1_A 1DW3_C 1DW0_A 1OAE_A 1GU2_B 1E8E_A.
Probab=98.03 E-value=4.9e-06 Score=49.06 Aligned_cols=83 Identities=19% Similarity=0.316 Sum_probs=41.1
Q ss_pred CCCCCCCHHHHHHHHHh---------hCcccccccCCCCC---CCCCCCCCccCCCCCCCCCCccchhccccceeeCHHH
Q 033758 5 EEAPPGNPKAGEKIFKT---------KCAQCHTVVKGAGH---KQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKT 72 (112)
Q Consensus 5 ~~~~~~~~~~G~~lf~~---------~C~~CH~~~~~~~~---~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (112)
++....++++|+++|.+ .|++||+.+....+ ..|..+.-+.. +...-+|+ +.+.
T Consensus 4 ~~~~~~sa~rG~~~f~~~~~~~g~~~sCasCH~~~p~~~Gkh~~TgK~I~PmAp----s~Np~Rft----------D~~k 69 (98)
T PF09086_consen 4 PAFAGFSAARGEAFFTSKHTGNGKEWSCASCHTADPTQPGKHAKTGKVIEPMAP----SVNPKRFT----------DAAK 69 (98)
T ss_dssp CCTSS--HHHHHHHHH--ECCTTCECSCHHHH-SSTTS-EE-TTTS-EE--SST----TTSTTTTS----------SHHH
T ss_pred cccCCCCHHHHHHHHHccCCCCCCCCCcccccCCCcccccccccCCCcccCcCC----ccChhhcC----------CHHH
Confidence 45667899999999963 29999997642211 11222211111 01111122 5666
Q ss_pred HHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 033758 73 LYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYL 107 (112)
Q Consensus 73 l~~~l~~~~~~~~~~~m~~~~~l~~~ei~~l~ayl 107 (112)
+.+|++..=.. -+..-=|.+|..|+++||
T Consensus 70 VEKwf~RNC~d------vlgReCTa~EKgD~l~yl 98 (98)
T PF09086_consen 70 VEKWFKRNCND------VLGRECTAQEKGDVLAYL 98 (98)
T ss_dssp HHHHHHHHHHH------HHSS---HHHHHHHHHHH
T ss_pred HHHHHHccchh------hhcccCCHHHhcchheeC
Confidence 77776432110 122334799999999997
No 37
>COG2993 CcoO Cbb3-type cytochrome oxidase, cytochrome c subunit [Energy production and conversion]
Probab=97.92 E-value=2.7e-06 Score=56.23 Aligned_cols=81 Identities=26% Similarity=0.380 Sum_probs=52.9
Q ss_pred CHHHHHHHHHh-hCcccccccC--------------------------CCCCCCCCCCCCccCCCCCCCCCCccchhccc
Q 033758 11 NPKAGEKIFKT-KCAQCHTVVK--------------------------GAGHKQGPNLNGLFGRQSGTTPGYSYSAANKG 63 (112)
Q Consensus 11 ~~~~G~~lf~~-~C~~CH~~~~--------------------------~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~ 63 (112)
-...|+.+|.+ .|-.||+--- .|....||+|..+.
T Consensus 51 LeLaGR~IYIreGCy~CHSQmiRpfr~E~eRYGhySvA~Es~yDhPflWGSKRTGPDLaRVG------------------ 112 (227)
T COG2993 51 LELAGRDIYIREGCYVCHSQMIRPFRAEVERYGHYSVAGESVYDHPFLWGSKRTGPDLARVG------------------ 112 (227)
T ss_pred HHhccceeEeecccchhhhhccccchHHHHhhccceechhhhccCchhhcCCccCcchhhhc------------------
Confidence 34689999986 5999997310 01223344444444
Q ss_pred cceeeCHHHHHHHHhCCCCCCCCCCCC-CCCCC-CHHHHHHHHHHHHhhc
Q 033758 64 MAVIWEEKTLYDYLLNPKKYIPGTKMV-FPGLK-KPQDRADLIAYLKEST 111 (112)
Q Consensus 64 ~~~~~~~~~l~~~l~~~~~~~~~~~m~-~~~~l-~~~ei~~l~ayl~sl~ 111 (112)
-.++.+|-..-+.+|+.++|.+.|| |.-+. +.-|++++.+=+++++
T Consensus 113 --~ryS~dWH~~Hl~~PR~vVPeSiMPsY~~L~~~~ld~~d~~~~~~~~r 160 (227)
T COG2993 113 --GRYSDDWHRAHLLDPRSVVPESIMPSYPWLFDNKLDVDDIGAELKALR 160 (227)
T ss_pred --cccccHHHHHHccCchhcCccccCcccHHHhcCCCchHHHHHHHHhhc
Confidence 4447889999999999999999886 44332 2336677766665553
No 38
>COG3245 CycB Cytochrome c5 [Energy production and conversion]
Probab=97.75 E-value=8e-05 Score=45.48 Aligned_cols=75 Identities=15% Similarity=0.214 Sum_probs=40.2
Q ss_pred HHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCCCCC-
Q 033758 14 AGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKMVFP- 92 (112)
Q Consensus 14 ~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m~~~- 92 (112)
.|+.+|...|..||...- ...|.......|-..-.. -.+.|.+--.++... |+|-.
T Consensus 49 ~Gk~vy~~tC~~CHa~~~----~GAPk~GdkAaW~PRiaq---------------G~dtL~~hai~GfnA----MPpkG~ 105 (126)
T COG3245 49 EGKKVYGATCQACHAAGL----PGAPKTGDKAAWAPRIAQ---------------GKDTLLDHAINGFNA----MPPKGG 105 (126)
T ss_pred ccchhHhhhhhHhccCCC----CCCCCCCchhhhhhHHHh---------------chHHHHHHHhccccC----CCCCCC
Confidence 399999999999997532 223332221111100000 123344444454432 22322
Q ss_pred -CCCCHHHHHHHHHHHHhhc
Q 033758 93 -GLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 93 -~~l~~~ei~~l~ayl~sl~ 111 (112)
.-.||+|+++.|.|+...+
T Consensus 106 ca~cSdDe~kAaId~M~~~~ 125 (126)
T COG3245 106 CADCSDDEVKAAIDFMAAAS 125 (126)
T ss_pred cCCCCHHHHHHHHHHHHhcc
Confidence 1247999999999997654
No 39
>PF09098 Dehyd-heme_bind: Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding; InterPro: IPR015182 Quinohemoprotein amine dehydrogenases (QHNDH) 1.4.99 from EC) are enzymes produced in the periplasmic space of certain Gram-negative bacteria, such as Paracoccus denitrificans and Pseudomonas putida, in response to primary amines, including n-butylamine and benzylamine. QHNDH catalyses the oxidative deamination of a wide range of aliphatic and aromatic amines through formation of a Schiff-base intermediate involving one of the quinone O atoms []. Catalysis requires the presence of a novel redox cofactor, cysteine tryptophylquinone (CTQ). CTQ is derived from the post-translational modification of specific residues, which involves the oxidation of the indole ring of a tryptophan residue to form tryptophylquinone, followed by covalent cross-linking with a cysteine residue []. There is one CTQ per subunit in QHNDH. In addition to CTQ, two haem c cofactors are present in QHNDH that mediate the transfer of the substrate-derived electrons from CTQ to an external electron acceptor, cytochrome c-550 [, ]. QHNDH is a heterotrimer of alpha, beta and gamma subunits. The alpha and beta subunits contain signal peptides necessary for the translocation of QHNDH to the periplasm. The alpha subunit is composed of four domains - domain 1 forming a dihaem cytochrome, and domains 2-4 forming antiparallel beta-barrel structures; the beta subunit is a 7-bladed beta-propeller that provides part of the active site; and the small, catalytic gamma subunit contains the novel cross-linked CTQ cofactor, in addition to additional thioester cross-links between Cys and Asp/Glu residues that encage CTQ. The gamma subunit assumes a globular secondary structure with two short alpha-helices having many turns and bends []. This entry represents the dihaem cytochrome c domain of the QHNDH alpha subunit. The domain contain two cysteine residues that are involved in thioether linkages to haem []. ; PDB: 1PBY_A 1JJU_A 1JMZ_A 1JMX_A.
Probab=97.72 E-value=1.7e-05 Score=51.07 Aligned_cols=18 Identities=39% Similarity=0.850 Sum_probs=14.6
Q ss_pred HHHHHHHhhCcccccccC
Q 033758 14 AGEKIFKTKCAQCHTVVK 31 (112)
Q Consensus 14 ~G~~lf~~~C~~CH~~~~ 31 (112)
.|++|.+.+|+.||+.+.
T Consensus 2 ~G~~Lv~~kC~~CHs~~~ 19 (167)
T PF09098_consen 2 DGEQLVQEKCAGCHSADY 19 (167)
T ss_dssp -HHHHHHHCHCCTC-EEC
T ss_pred cHHHHHHHHHHHhcCccc
Confidence 699999999999999864
No 40
>PF02167 Cytochrom_C1: Cytochrome C1 family; InterPro: IPR002326 Cytochrome bc1 complex (ubiquinol:ferricytochrome c oxidoreductase) is found in mitochondria, photosynthetic bacteria and other prokaryotes. It is minimally composed of three subunits: cytochrome b, carrying a low- and a high-potential haem group; cytochrome c1 (cyt c1); and a high-potential Rieske iron-sulphur protein. The general function of the complex is electron transfer between two mobile redox carriers, ubiquinol and cytochrome c; the electron transfer is coupled with proton translocation across the membrane, thus generating proton-motive force in the form of an electrochemical potential that can drive ATP synthesis. In its structure and functions, the cytochrome bc1 complex bears extensive analogy to the cytochrome b6f complex of chloroplasts and cyanobacteria; cyt c1 plays an analogous role to cytochrome f, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1P84_D 2IBZ_D 1EZV_D 3CX5_O 3CXH_O 1KB9_D 1KYO_D 1ZRT_Q 2CA4_B 2C9X_B ....
Probab=97.42 E-value=4.4e-05 Score=51.81 Aligned_cols=23 Identities=22% Similarity=0.652 Sum_probs=19.4
Q ss_pred CCCCHHHHHHHHHhhCccccccc
Q 033758 8 PPGNPKAGEKIFKTKCAQCHTVV 30 (112)
Q Consensus 8 ~~~~~~~G~~lf~~~C~~CH~~~ 30 (112)
..+++.+|.++|.++|++||++.
T Consensus 11 D~aslqRG~qvy~~~C~~CHsl~ 33 (219)
T PF02167_consen 11 DKASLQRGAQVYMEVCASCHSLK 33 (219)
T ss_dssp -HHHHHHHHHHHHHTGGGTSBCT
T ss_pred cHHHHHHHHHHHHHHHhhccccc
Confidence 34567999999999999999975
No 41
>PF06537 DUF1111: Protein of unknown function (DUF1111); InterPro: IPR010538 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=97.39 E-value=7.3e-05 Score=56.04 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=19.5
Q ss_pred CCCCCHHHHHHHHHh-hCccccccc
Q 033758 7 APPGNPKAGEKIFKT-KCAQCHTVV 30 (112)
Q Consensus 7 ~~~~~~~~G~~lf~~-~C~~CH~~~ 30 (112)
.....+.+|++||.+ .|+.||...
T Consensus 358 ~~~~~v~~G~~lF~~~GCa~CH~p~ 382 (499)
T PF06537_consen 358 LDDPQVLRGKQLFYQIGCASCHTPS 382 (499)
T ss_pred CCcHHHHHHHHHHHhcCCcccCCCc
Confidence 345677999999998 499999864
No 42
>PF10643 Cytochrome-c551: Photosystem P840 reaction-centre cytochrome c-551; InterPro: IPR019604 A photosynthetic reaction-centre complex is found in certain green sulphur bacteria such as Chlorobium vibrioforme, which are anaerobic photo-auto-trophic organisms. The primary electron donor is P840, a probable B-Chl a dimer, and the primary electron acceptor is a B-Chl monomer. Also on the donor side c-type cytochromes are known to function as electron donors to photo-oxidised P840. This family is thus the secondary endogenous donor of the photosynthetic reaction-centre complex and is a membrane-bound cytochrome containing a single haem group. ; PDB: 3A9F_A.
Probab=96.93 E-value=0.00034 Score=46.79 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=16.3
Q ss_pred CCCHHHHHHHHHhhCccccccc
Q 033758 9 PGNPKAGEKIFKTKCAQCHTVV 30 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~ 30 (112)
..+...-+.+|+.+|..||+.+
T Consensus 166 gfdf~AAk~L~~~KCNkCHTl~ 187 (233)
T PF10643_consen 166 GFDFAAAKALFDRKCNKCHTLK 187 (233)
T ss_dssp T--HHHHHHHHHHHTTSSS-SH
T ss_pred hhhHHHHHHHHHhhccccccHH
Confidence 4566778899999999999975
No 43
>PF14376 Haem_bd: Haem-binding domain
Probab=96.88 E-value=0.00099 Score=42.15 Aligned_cols=41 Identities=12% Similarity=0.233 Sum_probs=26.0
Q ss_pred HHHHHHHHhCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHhh
Q 033758 70 EKTLYDYLLNPKKYIPG-TKMVFPGLKKPQDRADLIAYLKES 110 (112)
Q Consensus 70 ~~~l~~~l~~~~~~~~~-~~m~~~~~l~~~ei~~l~ayl~sl 110 (112)
.+.+...|+++..-.+. .+|=....||++|++.|++|++..
T Consensus 95 l~~i~~~I~~g~MP~~~Y~~~H~~a~Ls~~ek~~Ll~Wi~~~ 136 (137)
T PF14376_consen 95 LAKIEEVIEDGEMPPPSYTLLHWEAKLSEEEKQALLNWIKEQ 136 (137)
T ss_pred HHHHHHHHHcCCCChHHHhhhCCCCCCCHHHHHHHHHHHHHc
Confidence 34566666665432221 122245668999999999999864
No 44
>COG3748 Predicted membrane protein [Function unknown]
Probab=96.82 E-value=0.0031 Score=45.13 Aligned_cols=74 Identities=14% Similarity=0.178 Sum_probs=40.5
Q ss_pred CHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHH-----HhCCCCCCC
Q 033758 11 NPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDY-----LLNPKKYIP 85 (112)
Q Consensus 11 ~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----l~~~~~~~~ 85 (112)
+...-+.+.+..|..||.....-.....|+..-.. .+++++... ++.++
T Consensus 323 ~F~kv~~~v~~rCs~CHaa~P~~e~~~~~p~gv~l----------------------dt~~~iaa~A~~Iy~qA~~---- 376 (407)
T COG3748 323 HFAKVRDVVQGRCSMCHAAEPTWEGISAPPKGVML----------------------DTDEQIAAHAREIYLQAGR---- 376 (407)
T ss_pred chHHHHHHHHhhhhhhhcCCCcccccccCCCceee----------------------cCHHHHHHHHHHHHHHHHH----
Confidence 34455667777899999865322122233321110 134444432 22222
Q ss_pred CCCCCCC--CCCCHHHHHHHHHHHHhh
Q 033758 86 GTKMVFP--GLKKPQDRADLIAYLKES 110 (112)
Q Consensus 86 ~~~m~~~--~~l~~~ei~~l~ayl~sl 110 (112)
+..||.. ..+||+|++-|.+|+.+-
T Consensus 377 s~~MP~gNvt~mT~eER~ll~aW~e~~ 403 (407)
T COG3748 377 SHAMPPGNVTQMTDEERALLAAWFESG 403 (407)
T ss_pred hccCCCcccccCCHHHHHHHHHHHHhc
Confidence 2345533 335799999999999763
No 45
>KOG3052 consensus Cytochrome c1 [Energy production and conversion]
Probab=96.60 E-value=0.00059 Score=47.06 Aligned_cols=27 Identities=22% Similarity=0.565 Sum_probs=21.7
Q ss_pred CCCCCCCCHHHHHHHHHhhCccccccc
Q 033758 4 FEEAPPGNPKAGEKIFKTKCAQCHTVV 30 (112)
Q Consensus 4 ~~~~~~~~~~~G~~lf~~~C~~CH~~~ 30 (112)
+.+...+.+.+|.++|++.|++||+.+
T Consensus 87 lss~DhaSiRRGyqVYkqVCaaCHSm~ 113 (311)
T KOG3052|consen 87 LSSFDHASIRRGYQVYKQVCAACHSMD 113 (311)
T ss_pred cccccHHHHhhhHHHHHHHHHHhhhhH
Confidence 344555678999999999999999964
No 46
>TIGR03806 chp_HNE_0200 conserved hypothetical protein, HNE_0200 family. The model TIGR03805 describes an uncharacterized protein family that contains repeats associated with the formation of a right-handed helical stack of parallel beta strands, homologous to those found in a number of carbohydrate-binding proteins and sugar hydrolases. This model describes another uncharacterized protein family, found in the same species as TIGR03805 member proteins, usually as the adjacent gene or in a fusion protein. An example is HNE_0200 from Hyphomonas neptunium ATCC 15444. Sometimes two members of this family are with a single member of TIGR03805. The function is unknown.
Probab=96.52 E-value=0.014 Score=41.83 Aligned_cols=20 Identities=20% Similarity=0.521 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhCcccccccC
Q 033758 12 PKAGEKIFKTKCAQCHTVVK 31 (112)
Q Consensus 12 ~~~G~~lf~~~C~~CH~~~~ 31 (112)
..+-+-++..+|+.||+.++
T Consensus 213 e~rarpyL~~NC~~CH~p~g 232 (317)
T TIGR03806 213 AQRARAYLDVNCAHCHNPGG 232 (317)
T ss_pred HHHHHHHHHhHHHhcCCCCc
Confidence 46677788889999999764
No 47
>COG1858 MauG Cytochrome c peroxidase [Inorganic ion transport and metabolism]
Probab=95.94 E-value=0.02 Score=41.72 Aligned_cols=24 Identities=38% Similarity=0.708 Sum_probs=19.2
Q ss_pred CCCCCHHHHHHHHH-h-hCccccccc
Q 033758 7 APPGNPKAGEKIFK-T-KCAQCHTVV 30 (112)
Q Consensus 7 ~~~~~~~~G~~lf~-~-~C~~CH~~~ 30 (112)
.......+|.+||. + +|++||...
T Consensus 215 aLT~~e~rGl~LF~~k~~C~aCH~g~ 240 (364)
T COG1858 215 ALTEQEKRGLALFKGKANCAACHNGI 240 (364)
T ss_pred hcCHHHHHHHHHHccCCCchhhccCc
Confidence 44567799999999 5 599999754
No 48
>TIGR02162 torC trimethylamine-N-oxide reductase c-type cytochrome TorC. This family includes consists of TorC, a pentahemic c-type cytochrome subunit of periplasmic reductases for trimethylamine-N-oxide (TMAO). The N-terminal half is closely related to tetrahemic NapC (or NirT) subunits of periplasmic nitrate (or nitrite) reductases; some species have both TMAO and nitrate reductase complexes.
Probab=95.79 E-value=0.014 Score=42.99 Aligned_cols=18 Identities=17% Similarity=0.591 Sum_probs=15.9
Q ss_pred HHHHHHHHhhCccccccc
Q 033758 13 KAGEKIFKTKCAQCHTVV 30 (112)
Q Consensus 13 ~~G~~lf~~~C~~CH~~~ 30 (112)
..|+.+|..+|+.||...
T Consensus 322 ~~a~~ly~~~Cs~CH~~~ 339 (386)
T TIGR02162 322 AYAKSMYNGACSMCHVQP 339 (386)
T ss_pred HHHHHHHhcchhhhcCCC
Confidence 679999999999999863
No 49
>COG3488 Predicted thiol oxidoreductase [Energy production and conversion]
Probab=95.46 E-value=0.045 Score=39.61 Aligned_cols=23 Identities=35% Similarity=0.663 Sum_probs=18.6
Q ss_pred CCCCCHHHHHHHHHh-hCcccccc
Q 033758 7 APPGNPKAGEKIFKT-KCAQCHTV 29 (112)
Q Consensus 7 ~~~~~~~~G~~lf~~-~C~~CH~~ 29 (112)
....++..|++||.+ .|.+||..
T Consensus 346 ~~dp~vl~GkkLF~~agC~aCH~p 369 (481)
T COG3488 346 VQDPQVLAGKKLFAQAGCVACHTP 369 (481)
T ss_pred cCChhhhhhhHHHHhcCchhccCC
Confidence 344567899999987 59999985
No 50
>PRK15032 trimethylamine N-oxide reductase cytochrome c-type subunit; Provisional
Probab=95.16 E-value=0.034 Score=41.03 Aligned_cols=18 Identities=22% Similarity=0.685 Sum_probs=15.8
Q ss_pred HHHHHHHHhhCccccccc
Q 033758 13 KAGEKIFKTKCAQCHTVV 30 (112)
Q Consensus 13 ~~G~~lf~~~C~~CH~~~ 30 (112)
..|+.+|+.+|+.||+.-
T Consensus 319 ~ya~~ly~~~Cs~CHa~~ 336 (390)
T PRK15032 319 AYADSLYNGTCNQCHGAP 336 (390)
T ss_pred HHHHHHHhccchhhcCCC
Confidence 678999999999999863
No 51
>COG3258 Cytochrome c [Energy production and conversion]
Probab=94.89 E-value=0.14 Score=35.87 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=13.3
Q ss_pred CHHHHHHHHHHHHhhc
Q 033758 96 KPQDRADLIAYLKEST 111 (112)
Q Consensus 96 ~~~ei~~l~ayl~sl~ 111 (112)
+..|++++++|++=|+
T Consensus 121 DspEmkAmlaY~kWL~ 136 (293)
T COG3258 121 DSPEMKAMLAYMKWLK 136 (293)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 5779999999997664
No 52
>PF09626 DHC: Dihaem cytochrome c; InterPro: IPR018588 Dihaem cytochrome c (DHC) is a soluble c-type cytochrome that folds into two distinct domains, each binding a single haem group and connected by a small linker region. Despite little sequence similarity, the N-terminal domain (residues 12-75) is a class I type cytochrome c, that binds one of the haems, but the domain surrounding the other haem is structurally unique. DHC binds electrostatically to an oxygen-binding protein, sphaeroides haem protein (SHP), as a component of a conserved electron transfer pathway. DHC acts as the physiological electron donor for SHP during phototrophic growth []. In certain species DHC is found upstream of IPR011577 from INTERPRO. ; PDB: 2FWT_A 2FW5_A.
Probab=94.42 E-value=0.079 Score=32.81 Aligned_cols=12 Identities=33% Similarity=1.041 Sum_probs=7.2
Q ss_pred HHhhCccccccc
Q 033758 19 FKTKCAQCHTVV 30 (112)
Q Consensus 19 f~~~C~~CH~~~ 30 (112)
|.+.|++||-..
T Consensus 1 Y~~eCgsCH~ay 12 (120)
T PF09626_consen 1 YKEECGSCHMAY 12 (120)
T ss_dssp -HHHTTSSS---
T ss_pred CccchhhccCcC
Confidence 567899999754
No 53
>PF03150 CCP_MauG: Di-haem cytochrome c peroxidase; InterPro: IPR004852 This is a group of distinct cytochrome c peroxidases (CCPs) that contain two haem groups. Similar to other cytochrome c peroxidases, they reduce hydrogen peroxide to water using c-type haem as an oxidizable substrate. However, since they possess two, instead of one, haem prosthetic groups, bacterial CCPs reduce hydrogen peroxide without the need to generate semi-stable free radicals. The two haem groups have significantly different redox potentials. The high potential (+320 mV) haem feeds electrons from electron shuttle proteins to the low potential (-330 mV) haem, where peroxide is reduced (indeed, the low potential site is known as the peroxidatic site) []. The CCP protein itself is structured into two domains, each containing one c-type haem group, with a calcium-binding site at the domain interface. This family also includes MauG proteins, whose similarity to di-haem CCP was previously recognised [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IQC_A 2VHD_B 1EB7_A 3RN0_A 3SVW_B 3RMZ_A 3SJL_B 3PXW_A 3SLE_B 3PXS_A ....
Probab=93.50 E-value=0.032 Score=36.17 Aligned_cols=20 Identities=35% Similarity=0.750 Sum_probs=14.3
Q ss_pred CHHHHHHHHHh---------hCccccccc
Q 033758 11 NPKAGEKIFKT---------KCAQCHTVV 30 (112)
Q Consensus 11 ~~~~G~~lf~~---------~C~~CH~~~ 30 (112)
.++-|+.||.. .|++||..+
T Consensus 4 ~~~LGk~LF~D~~LS~~~~~SCasCH~~~ 32 (159)
T PF03150_consen 4 KAALGKKLFFDPRLSGDGTVSCASCHDPE 32 (159)
T ss_dssp HHHHHHHHHT-GGGSTTSS--HHHHS-TT
T ss_pred HHHHHHHHhCCCccCCCcCcCchhhCCCc
Confidence 46789999943 499999876
No 54
>TIGR03791 TTQ_mauG tryptophan tryptophylquinone biosynthesis enzyme MauG. Members of this protein family are the tryptophan tryptophylquinone biosynthesis (TTQ) enzyme MauG, as found in Methylobacterium extorquens and related species. This protein is required to complete the maturation of the TTQ cofactor in the methylamine dehydrogenase light (beta) chain.
Probab=91.02 E-value=0.09 Score=37.36 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=16.9
Q ss_pred CCHHHHHHHHH---------hhCcccccccC
Q 033758 10 GNPKAGEKIFK---------TKCAQCHTVVK 31 (112)
Q Consensus 10 ~~~~~G~~lf~---------~~C~~CH~~~~ 31 (112)
+.++-|+.||- ..|++||....
T Consensus 4 ~k~~LGk~LFfD~~LS~~~~~SCasCH~p~~ 34 (291)
T TIGR03791 4 EKAALGKALFFDPRLSRDGSMSCATCHNPGL 34 (291)
T ss_pred HHHHHHHHHhcCcccCCCCCcCchhcCCccc
Confidence 45788999993 14999999764
No 55
>PF07635 PSCyt1: Planctomycete cytochrome C; InterPro: IPR011429 These proteins share a region of homology at their N terminus that contains the C-{CPWHF}-{CPWR}-C-H-{CFYW} motif typical of cytochrome c.
Probab=88.47 E-value=0.27 Score=26.41 Aligned_cols=9 Identities=44% Similarity=0.899 Sum_probs=7.5
Q ss_pred CcccccccC
Q 033758 23 CAQCHTVVK 31 (112)
Q Consensus 23 C~~CH~~~~ 31 (112)
|..||+.+.
T Consensus 1 C~~CHg~~~ 9 (59)
T PF07635_consen 1 CFSCHGPDK 9 (59)
T ss_pred CcCCCCCCC
Confidence 999999764
No 56
>COG2857 CYT1 Cytochrome c1 [Energy production and conversion]
Probab=86.97 E-value=0.1 Score=36.27 Aligned_cols=24 Identities=25% Similarity=0.711 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHHHhhCcccccccC
Q 033758 8 PPGNPKAGEKIFKTKCAQCHTVVK 31 (112)
Q Consensus 8 ~~~~~~~G~~lf~~~C~~CH~~~~ 31 (112)
..+...+|.++|..+|..||+...
T Consensus 39 d~~~lq~g~~~~~~~c~~chs~~~ 62 (250)
T COG2857 39 DKGSLQRGAQLYKEYCSACHSLKL 62 (250)
T ss_pred hhHHhhhceeeeecCChhhccccc
Confidence 345678999999999999999753
No 57
>COG1858 MauG Cytochrome c peroxidase [Inorganic ion transport and metabolism]
Probab=84.91 E-value=0.51 Score=34.61 Aligned_cols=24 Identities=38% Similarity=0.948 Sum_probs=18.1
Q ss_pred CCCHHHHHHHHHh---------hCcccccccCC
Q 033758 9 PGNPKAGEKIFKT---------KCAQCHTVVKG 32 (112)
Q Consensus 9 ~~~~~~G~~lf~~---------~C~~CH~~~~~ 32 (112)
+..++-|+.||-. .|++||.....
T Consensus 59 ~~~~aLGk~LffDprLS~sg~~SC~sCH~~~~g 91 (364)
T COG1858 59 PAKAALGKKLFFDPRLSASGTISCATCHNLARG 91 (364)
T ss_pred hHHHHHHHHhhcCcccCCCCCcCchhhcCcccc
Confidence 3557899999932 49999998643
No 58
>PF06537 DUF1111: Protein of unknown function (DUF1111); InterPro: IPR010538 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=76.57 E-value=1.5 Score=33.53 Aligned_cols=17 Identities=24% Similarity=0.630 Sum_probs=13.0
Q ss_pred HHHh-hCcccccccCCCC
Q 033758 18 IFKT-KCAQCHTVVKGAG 34 (112)
Q Consensus 18 lf~~-~C~~CH~~~~~~~ 34 (112)
||+. .|.+||--+|.+.
T Consensus 66 LfN~~SC~sCH~~dGRG~ 83 (499)
T PF06537_consen 66 LFNARSCQSCHIKDGRGH 83 (499)
T ss_pred hhhhhhHhhcccCCCCCC
Confidence 7876 4999998876543
No 59
>PF09832 DUF2059: Uncharacterized protein conserved in bacteria (DUF2059); InterPro: IPR018637 This entry contains proteins that have no known function. ; PDB: 2X3O_B 3OAO_A.
Probab=75.42 E-value=2.8 Score=22.49 Aligned_cols=17 Identities=6% Similarity=0.192 Sum_probs=13.5
Q ss_pred CCCCHHHHHHHHHHHHh
Q 033758 93 GLKKPQDRADLIAYLKE 109 (112)
Q Consensus 93 ~~l~~~ei~~l~ayl~s 109 (112)
..+|++|+.+|++|+.|
T Consensus 15 ~~ft~~El~~i~~FY~S 31 (64)
T PF09832_consen 15 EHFTEEELDAILAFYES 31 (64)
T ss_dssp HHS-HHHHHHHHHHHHS
T ss_pred HHCCHHHHHHHHHHHCC
Confidence 34589999999999975
No 60
>PF07583 PSCyt2: Protein of unknown function (DUF1549); InterPro: IPR011444 The function is not known. It is found associated with IPR022655 from INTERPRO. It is also found associated with the Planctomycete cytochrome C domain IPR011429 from INTERPRO.
Probab=73.05 E-value=1.6 Score=29.56 Aligned_cols=13 Identities=46% Similarity=1.106 Sum_probs=9.1
Q ss_pred HHHHh---hCcccccc
Q 033758 17 KIFKT---KCAQCHTV 29 (112)
Q Consensus 17 ~lf~~---~C~~CH~~ 29 (112)
++|.. .|+.||.-
T Consensus 168 ~~FLG~~l~CAqCHdH 183 (208)
T PF07583_consen 168 RVFLGVRLQCAQCHDH 183 (208)
T ss_pred HHHHhcccchhhccCC
Confidence 45654 59999963
No 61
>TIGR03153 cytochr_NrfH cytochrome c nitrate reductase, small subunit. Members of this protein family are NrfH, a tetraheme cytochrome c. NrfH is the cytochrome c nitrate reductase small subunit, and forms a heterodimer with NrfA, the catalytic subunit. While NrfA can act as a monomer, NrfH can bind to and anchor NrfA in the membrane and enables electron transfer to NrfA from quinones.
Probab=69.57 E-value=1.8 Score=27.22 Aligned_cols=16 Identities=25% Similarity=0.760 Sum_probs=12.6
Q ss_pred HHHHHHHhhCcccccc
Q 033758 14 AGEKIFKTKCAQCHTV 29 (112)
Q Consensus 14 ~G~~lf~~~C~~CH~~ 29 (112)
..+++.+.+|..||+.
T Consensus 96 ~~~~~~~~nC~~CH~~ 111 (135)
T TIGR03153 96 HSRKVVQENCVRCHAG 111 (135)
T ss_pred HHhHhhhcchHHHHhH
Confidence 4467777899999974
No 62
>PF07627 PSCyt3: Protein of unknown function (DUF1588); InterPro: IPR013039 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013042 from INTERPRO and IPR013043 from INTERPRO.
Probab=69.31 E-value=2.5 Score=25.36 Aligned_cols=8 Identities=50% Similarity=1.219 Sum_probs=6.6
Q ss_pred hCcccccc
Q 033758 22 KCAQCHTV 29 (112)
Q Consensus 22 ~C~~CH~~ 29 (112)
.|+.||..
T Consensus 71 ~Ca~CH~~ 78 (101)
T PF07627_consen 71 ACASCHRK 78 (101)
T ss_pred cHHHHhhh
Confidence 49999974
No 63
>PF08090 Enterotoxin_HS1: Heat stable E.coli enterotoxin 1; InterPro: IPR012557 Heat-stable toxin 1 of entero-aggregative Escherichia coli (EAST1) is a small toxin. It is not, however, solely associated with entero-aggregative E. coli but also with many other diarrhoeic E. coli families. Some studies have established the role of EAST1 in some human outbreaks of diarrhoea. Isolates from farm animals have been shown to carry the astA gene coding for EAST1. However, the relation between the presence of EAST1 and disease is not conclusive [].
Probab=65.91 E-value=2.4 Score=19.84 Aligned_cols=10 Identities=40% Similarity=0.956 Sum_probs=7.7
Q ss_pred hhCccccccc
Q 033758 21 TKCAQCHTVV 30 (112)
Q Consensus 21 ~~C~~CH~~~ 30 (112)
..|++||+..
T Consensus 20 tac~s~~grt 29 (36)
T PF08090_consen 20 TACGSCHGRT 29 (36)
T ss_pred hhhccCCCCc
Confidence 4699999854
No 64
>PF11845 DUF3365: Protein of unknown function (DUF3365); InterPro: IPR021796 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 198 to 657 amino acids in length.
Probab=63.90 E-value=2 Score=28.07 Aligned_cols=8 Identities=38% Similarity=1.120 Sum_probs=6.9
Q ss_pred hhCccccc
Q 033758 21 TKCAQCHT 28 (112)
Q Consensus 21 ~~C~~CH~ 28 (112)
..|..||+
T Consensus 147 ~~CL~CHg 154 (188)
T PF11845_consen 147 ESCLSCHG 154 (188)
T ss_pred hHHHHccC
Confidence 46999998
No 65
>PHA02119 hypothetical protein
Probab=54.74 E-value=8.9 Score=21.44 Aligned_cols=11 Identities=27% Similarity=0.649 Sum_probs=8.9
Q ss_pred HHHHHHHHhhc
Q 033758 101 ADLIAYLKEST 111 (112)
Q Consensus 101 ~~l~ayl~sl~ 111 (112)
.||+.||++|.
T Consensus 57 ~divdylr~lg 67 (87)
T PHA02119 57 KDIVDYLRSLG 67 (87)
T ss_pred HHHHHHHHHcc
Confidence 57899999873
No 66
>TIGR01905 paired_CXXCH_1 doubled CXXCH domain. This model represents a domain of about 41 amino acids that contains, among other motifs, two copies of the motif CXXCH associated with heme binding. Almost every member of this family has at least three copies of this domain (at least six copies of CXXCH) is predicted to be a high molecular weight c-type cytochrome. Members are found mostly in species of Shewanella, Geobacter, and Vibrio.
Probab=54.54 E-value=5.1 Score=19.86 Aligned_cols=10 Identities=30% Similarity=0.846 Sum_probs=8.2
Q ss_pred hCcccccccC
Q 033758 22 KCAQCHTVVK 31 (112)
Q Consensus 22 ~C~~CH~~~~ 31 (112)
.|..||...+
T Consensus 8 ~C~~CH~pH~ 17 (41)
T TIGR01905 8 DCTSCHDPHG 17 (41)
T ss_pred Cccccccccc
Confidence 5999998764
No 67
>PF06943 zf-LSD1: LSD1 zinc finger; InterPro: IPR005735 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC []. This domain may play a role in the regulation of transcription, via either repression of a prodeath pathway or activation of an antideath pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].
Probab=54.00 E-value=6.2 Score=17.49 Aligned_cols=8 Identities=75% Similarity=1.564 Sum_probs=6.3
Q ss_pred hCcccccc
Q 033758 22 KCAQCHTV 29 (112)
Q Consensus 22 ~C~~CH~~ 29 (112)
.|+.||.+
T Consensus 18 rCa~C~~V 25 (25)
T PF06943_consen 18 RCACCHTV 25 (25)
T ss_pred ECCccCcC
Confidence 49999964
No 68
>PF09699 Paired_CXXCH_1: Doubled CXXCH motif (Paired_CXXCH_1)
Probab=51.47 E-value=5.7 Score=19.29 Aligned_cols=10 Identities=30% Similarity=0.879 Sum_probs=8.1
Q ss_pred hCcccccccC
Q 033758 22 KCAQCHTVVK 31 (112)
Q Consensus 22 ~C~~CH~~~~ 31 (112)
.|..||...+
T Consensus 8 ~C~~CH~~H~ 17 (41)
T PF09699_consen 8 QCTSCHDPHG 17 (41)
T ss_pred ChhHhccccc
Confidence 4999998764
No 69
>COG3488 Predicted thiol oxidoreductase [Energy production and conversion]
Probab=50.96 E-value=7.2 Score=28.66 Aligned_cols=16 Identities=31% Similarity=0.814 Sum_probs=12.2
Q ss_pred HHHhh-CcccccccCCC
Q 033758 18 IFKTK-CAQCHTVVKGA 33 (112)
Q Consensus 18 lf~~~-C~~CH~~~~~~ 33 (112)
+|+.+ |-.||--+|.|
T Consensus 93 lfN~raCqnCHvkDGRG 109 (481)
T COG3488 93 LFNTRACQNCHVKDGRG 109 (481)
T ss_pred ccccccccccccccCCC
Confidence 56664 99999887654
No 70
>PF14769 CLAMP: Flagellar C1a complex subunit C1a-32
Probab=49.63 E-value=50 Score=19.44 Aligned_cols=17 Identities=18% Similarity=0.419 Sum_probs=14.6
Q ss_pred CCCCHHHHHHHHHHHHh
Q 033758 93 GLKKPQDRADLIAYLKE 109 (112)
Q Consensus 93 ~~l~~~ei~~l~ayl~s 109 (112)
++.+.+|+.+|++|+.+
T Consensus 62 ~iFs~~~~~~i~~y~~~ 78 (101)
T PF14769_consen 62 GIFSVDQVKAIIDYFHN 78 (101)
T ss_pred CcCCHHHHHHHHHHHHH
Confidence 56789999999999964
No 71
>TIGR01904 GSu_C4xC__C2xCH Geobacter sulfurreducens CxxxxCH...CXXCH domain. This domain occurs from three to eight times in eight different proteins of Geobacter sulfurreducens. The final CXXCH motif matches ProSite motif PS00190, the cytochrome c family heme-binding site signature, suggesting
Probab=49.05 E-value=7.1 Score=19.53 Aligned_cols=6 Identities=50% Similarity=1.475 Sum_probs=5.3
Q ss_pred hCcccc
Q 033758 22 KCAQCH 27 (112)
Q Consensus 22 ~C~~CH 27 (112)
.|..||
T Consensus 37 ~C~~CH 42 (42)
T TIGR01904 37 GCNGCH 42 (42)
T ss_pred cCcccC
Confidence 599999
No 72
>PF13822 ACC_epsilon: Acyl-CoA carboxylase epsilon subunit
Probab=46.87 E-value=23 Score=19.11 Aligned_cols=18 Identities=22% Similarity=0.165 Sum_probs=14.6
Q ss_pred CCCHHHHHHHHHHHHhhc
Q 033758 94 LKKPQDRADLIAYLKEST 111 (112)
Q Consensus 94 ~l~~~ei~~l~ayl~sl~ 111 (112)
.-|++|+.+|++-|..+.
T Consensus 10 nPt~eElAAL~aVlaa~~ 27 (62)
T PF13822_consen 10 NPTDEELAALTAVLAARA 27 (62)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 347999999999987654
No 73
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=42.93 E-value=40 Score=16.03 Aligned_cols=16 Identities=19% Similarity=0.451 Sum_probs=12.4
Q ss_pred eeCHHHHHHHHhCCCC
Q 033758 67 IWEEKTLYDYLLNPKK 82 (112)
Q Consensus 67 ~~~~~~l~~~l~~~~~ 82 (112)
.|+.+.|..||.....
T Consensus 3 tWs~~~L~~wL~~~gi 18 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGI 18 (38)
T ss_pred CCCHHHHHHHHHHcCC
Confidence 4788999999976543
No 74
>TIGR01053 LSD1 zinc finger domain, LSD1 subclass. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC
Probab=42.69 E-value=9.7 Score=17.69 Aligned_cols=9 Identities=56% Similarity=1.161 Sum_probs=7.2
Q ss_pred hCccccccc
Q 033758 22 KCAQCHTVV 30 (112)
Q Consensus 22 ~C~~CH~~~ 30 (112)
.|+.||.++
T Consensus 21 rCs~C~~vt 29 (31)
T TIGR01053 21 RCALCQTVN 29 (31)
T ss_pred ECCCCCeEe
Confidence 499999864
No 75
>PF13821 DUF4187: Domain of unknown function (DUF4187)
Probab=41.80 E-value=24 Score=18.67 Aligned_cols=14 Identities=29% Similarity=0.579 Sum_probs=12.2
Q ss_pred CHHHHHHHHHHHHh
Q 033758 96 KPQDRADLIAYLKE 109 (112)
Q Consensus 96 ~~~ei~~l~ayl~s 109 (112)
..+.+..|+.|||+
T Consensus 12 ~~e~L~~l~~YLR~ 25 (55)
T PF13821_consen 12 PEERLDKLLSYLRE 25 (55)
T ss_pred HHHHHHHHHHHHHh
Confidence 48889999999986
No 76
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=41.75 E-value=35 Score=21.86 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=19.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcC
Q 033758 90 VFPGLKKPQDRADLIAYLKESTA 112 (112)
Q Consensus 90 ~~~~~l~~~ei~~l~ayl~sl~~ 112 (112)
+|.+-..|.++..|+.||.+|++
T Consensus 137 ~f~~~~~D~~L~~l~~~L~~l~~ 159 (162)
T TIGR02251 137 SWFGDPNDTELLNLIPFLEGLRF 159 (162)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhc
Confidence 57666779999999999999864
No 77
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=40.65 E-value=72 Score=20.35 Aligned_cols=36 Identities=11% Similarity=0.226 Sum_probs=24.2
Q ss_pred cceeeCHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhh
Q 033758 64 MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110 (112)
Q Consensus 64 ~~~~~~~~~l~~~l~~~~~~~~~~~m~~~~~l~~~ei~~l~ayl~sl 110 (112)
.-+.|+++.+..... + |-+ .+|++|+..|..+|-..
T Consensus 23 ~LlIWT~eDV~~~a~-g--------me~--~lTd~E~~aVL~~I~~~ 58 (139)
T PF07128_consen 23 ALLIWTREDVRALAD-G--------MEY--NLTDDEARAVLARIGDI 58 (139)
T ss_pred EEEEecHHHHHHHHh-c--------CCC--CCCHHHHHHHHHHHhcC
Confidence 356788888877733 1 211 24799999999888654
No 78
>COG3005 TorC Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit [Energy production and conversion]
Probab=40.15 E-value=11 Score=25.18 Aligned_cols=15 Identities=20% Similarity=0.494 Sum_probs=10.4
Q ss_pred HHHHHhhCccccccc
Q 033758 16 EKIFKTKCAQCHTVV 30 (112)
Q Consensus 16 ~~lf~~~C~~CH~~~ 30 (112)
+..+...|..||..+
T Consensus 130 kan~s~eCr~CH~~~ 144 (190)
T COG3005 130 KANDSAECRNCHNFD 144 (190)
T ss_pred Hhhcchhhhhccchh
Confidence 334444699999876
No 79
>PF02304 Phage_B: Scaffold protein B; InterPro: IPR003513 This is a family of proteins from single-stranded DNA bacteriophages. Scaffold proteins B and D are required for procapsid formation. Sixty copies of the internal scaffold protein B are found in the procapsid.; GO: 0019069 viral capsid assembly, 0046729 viral procapsid; PDB: 1CD3_B 1AL0_B.
Probab=39.82 E-value=19 Score=21.85 Aligned_cols=18 Identities=28% Similarity=0.684 Sum_probs=12.8
Q ss_pred CHHHHHHHHHhh--Cccccc
Q 033758 11 NPKAGEKIFKTK--CAQCHT 28 (112)
Q Consensus 11 ~~~~G~~lf~~~--C~~CH~ 28 (112)
+++.|+.+|..+ |+.|--
T Consensus 63 ~iE~~ka~~~R~FG~A~~~d 82 (117)
T PF02304_consen 63 DIEAGKAACARRFGCATCDD 82 (117)
T ss_dssp HHHHHHHHHHHHHHSS--SC
T ss_pred HHHHHHHHHHHHcCCCCcch
Confidence 457899999875 999974
No 80
>cd07922 CarBa CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. 2-aminophenol 1,6-dioxygenase is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, the enzyme has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=39.02 E-value=14 Score=21.22 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=21.1
Q ss_pred eCHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHH
Q 033758 68 WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLI 104 (112)
Q Consensus 68 ~~~~~l~~~l~~~~~~~~~~~m~~~~~l~~~ei~~l~ 104 (112)
.+++...+|+.+|..... . .+ ||++|++.|.
T Consensus 15 ~dp~~rerF~~DPea~~~----~-~g-Lt~eE~~aL~ 45 (81)
T cd07922 15 KDPGLIERFQDDPSAVFE----E-YG-LTPAERAALR 45 (81)
T ss_pred cCHHHHHHHHHCHHHHHH----H-cC-CCHHHHHHHH
Confidence 367788888888875433 1 23 5699988774
No 81
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=38.95 E-value=71 Score=20.28 Aligned_cols=9 Identities=33% Similarity=0.899 Sum_probs=7.4
Q ss_pred hCccccccc
Q 033758 22 KCAQCHTVV 30 (112)
Q Consensus 22 ~C~~CH~~~ 30 (112)
.|..||...
T Consensus 28 rC~~C~n~~ 36 (147)
T TIGR02826 28 GCKGCHSPE 36 (147)
T ss_pred CCCCCCChH
Confidence 599999864
No 82
>PHA00003 B internal scaffolding protein
Probab=37.90 E-value=26 Score=21.34 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=14.9
Q ss_pred CHHHHHHHHHhh--Cccccc
Q 033758 11 NPKAGEKIFKTK--CAQCHT 28 (112)
Q Consensus 11 ~~~~G~~lf~~~--C~~CH~ 28 (112)
+++.|+.+|... |+.|--
T Consensus 66 ~iEagk~~c~RrFGgAtcdd 85 (120)
T PHA00003 66 DIEAGKAICARRFGGATCDD 85 (120)
T ss_pred HHHHHHHHHHHHcCCCCcch
Confidence 568899999874 999974
No 83
>COG3303 NrfA Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit [Inorganic ion transport and metabolism]
Probab=37.32 E-value=11 Score=28.12 Aligned_cols=14 Identities=43% Similarity=0.904 Sum_probs=11.0
Q ss_pred HHHHhhCccccccc
Q 033758 17 KIFKTKCAQCHTVV 30 (112)
Q Consensus 17 ~lf~~~C~~CH~~~ 30 (112)
.-|.+.|+.||.-+
T Consensus 327 ~~f~stCanCH~Qs 340 (501)
T COG3303 327 DNFASTCANCHTQS 340 (501)
T ss_pred HHHHHHHhhhhhhh
Confidence 45777899999853
No 84
>PF13435 Cytochrome_C554: Cytochrome c554 and c-prime; PDB: 1BVB_A 1FT5_A 1FT6_A 1SP3_A.
Probab=37.08 E-value=26 Score=20.51 Aligned_cols=11 Identities=36% Similarity=0.794 Sum_probs=8.4
Q ss_pred hhCcccccccC
Q 033758 21 TKCAQCHTVVK 31 (112)
Q Consensus 21 ~~C~~CH~~~~ 31 (112)
..|..||....
T Consensus 49 ~~C~~CH~~~~ 59 (130)
T PF13435_consen 49 DSCTSCHTPGG 59 (130)
T ss_dssp CCCGGGSCCTT
T ss_pred CcccccCCCcc
Confidence 46999998653
No 85
>TIGR03152 cyto_c552_HCOOH formate-dependent cytochrome c nitrite reductase, c552 subunit. Members of this protein family are cytochrome c552, a component of cytochrome c nitrite reductase, which is known more formally as nitrite reductase (cytochrome; ammonia-forming) (EC 1.7.2.2). Nitrate can be reduced by several enzymes. EC 1.7.2.2 reduces nitrite all the way to ammonia, rather than to ammonium hydroxide (nitrite reductase (NAD(P)H), EC 1.7.1.4) or nitric oxide (nitrite reductase (NO-forming), EC 1.7.2.1). Some examples of EC 1.7.2.2 occur in a seven gene system that enables formate-dependent nitrite reduction, but is also found in simpler contexts. Members of this protein family, however, belong to the formate-dependent system.
Probab=36.61 E-value=53 Score=25.05 Aligned_cols=18 Identities=11% Similarity=0.143 Sum_probs=9.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHh
Q 033758 89 MVFPGLKKPQDRADLIAYLKE 109 (112)
Q Consensus 89 m~~~~~l~~~ei~~l~ayl~s 109 (112)
+||..=++ +++|.+|...
T Consensus 190 fPW~~G~~---ve~~~~yyd~ 207 (439)
T TIGR03152 190 FPWDKGTD---VDSMEKYYDE 207 (439)
T ss_pred CCCCCCCC---HHHHHHHHhh
Confidence 45543332 4566777644
No 86
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=36.53 E-value=42 Score=23.11 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=16.2
Q ss_pred CCCCCCCHHHHHHHHHHHHh
Q 033758 90 VFPGLKKPQDRADLIAYLKE 109 (112)
Q Consensus 90 ~~~~~l~~~ei~~l~ayl~s 109 (112)
|...+-..+|+++++.||.+
T Consensus 218 Pmgr~G~~EevA~~V~fLAS 237 (256)
T KOG1200|consen 218 PMGRLGEAEEVANLVLFLAS 237 (256)
T ss_pred CccccCCHHHHHHHHHHHhc
Confidence 55555579999999999975
No 87
>COG5204 SPT4 Transcription elongation factor SPT4 [Transcription]
Probab=36.04 E-value=45 Score=19.92 Aligned_cols=35 Identities=17% Similarity=0.057 Sum_probs=19.2
Q ss_pred CHHHHHHHHhCCCCCCCC-CCCCCCCCCCHHHHHHHH
Q 033758 69 EEKTLYDYLLNPKKYIPG-TKMVFPGLKKPQDRADLI 104 (112)
Q Consensus 69 ~~~~l~~~l~~~~~~~~~-~~m~~~~~l~~~ei~~l~ 104 (112)
+..|+.+|.+-... .+| ..|-..+.|+++-+++|-
T Consensus 62 t~SWVakWqrid~f-~~GlYA~~V~G~L~edvve~L~ 97 (112)
T COG5204 62 TNSWVAKWQRIDEF-RKGLYAMVVEGALSEDVVEDLE 97 (112)
T ss_pred cHHHHHHHhhhccc-ccceeEEEEcccCCHHHHHHHH
Confidence 45677777643221 221 234456778777776664
No 88
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=34.67 E-value=15 Score=17.84 Aligned_cols=8 Identities=25% Similarity=0.933 Sum_probs=6.7
Q ss_pred hCcccccc
Q 033758 22 KCAQCHTV 29 (112)
Q Consensus 22 ~C~~CH~~ 29 (112)
.|..|||+
T Consensus 21 ~C~~C~G~ 28 (41)
T PF13453_consen 21 VCPSCGGI 28 (41)
T ss_pred ECCCCCeE
Confidence 59999985
No 89
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=34.52 E-value=16 Score=19.24 Aligned_cols=13 Identities=15% Similarity=0.590 Sum_probs=9.6
Q ss_pred HHhhCcccccccC
Q 033758 19 FKTKCAQCHTVVK 31 (112)
Q Consensus 19 f~~~C~~CH~~~~ 31 (112)
|.-.|..||..+|
T Consensus 21 ~aLIC~~C~~hNG 33 (54)
T PF10058_consen 21 YALICSKCFSHNG 33 (54)
T ss_pred eeEECcccchhhc
Confidence 3335999999865
No 90
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=34.12 E-value=18 Score=25.30 Aligned_cols=15 Identities=20% Similarity=0.231 Sum_probs=9.9
Q ss_pred CHHHHHHHHHHHHhh
Q 033758 96 KPQDRADLIAYLKES 110 (112)
Q Consensus 96 ~~~ei~~l~ayl~sl 110 (112)
+..++..|...|+.+
T Consensus 204 D~~~~~~l~~~L~~l 218 (261)
T cd03271 204 HFHDVKKLLEVLQRL 218 (261)
T ss_pred CHHHHHHHHHHHHHH
Confidence 466777777766654
No 91
>PF09722 DUF2384: Protein of unknown function (DUF2384); InterPro: IPR024467 This domain is found predominantly in proteobacterial proteins. Its function in unknown.
Probab=34.05 E-value=41 Score=17.19 Aligned_cols=41 Identities=17% Similarity=0.337 Sum_probs=27.0
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhh
Q 033758 69 EEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110 (112)
Q Consensus 69 ~~~~l~~~l~~~~~~~~~~~m~~~~~l~~~ei~~l~ayl~sl 110 (112)
+.+....|+..|.....+ .-|..-+.|...+..|.+||..+
T Consensus 10 d~~~a~~Wl~~p~~~l~g-~~Plel~~t~~G~~~V~~~L~~~ 50 (54)
T PF09722_consen 10 DEDKARRWLRTPNPALGG-RTPLELLRTEAGAERVLDYLDRI 50 (54)
T ss_pred CHHHHHHHHHChHHHhCC-CCHHHHHcChHHHHHHHHHHHHH
Confidence 567888999877665432 12222223588888999998765
No 92
>PF14522 Cytochrome_C7: Cytochrome c7; PDB: 3OV0_A 3OUQ_A 3H4N_A 3BXU_B 1OS6_A 2LDO_A 3OUE_A 3H33_A 1RWJ_A 1LM2_A ....
Probab=33.50 E-value=17 Score=19.08 Aligned_cols=8 Identities=50% Similarity=1.290 Sum_probs=6.9
Q ss_pred hCcccccc
Q 033758 22 KCAQCHTV 29 (112)
Q Consensus 22 ~C~~CH~~ 29 (112)
.|..||..
T Consensus 14 ~C~~CH~~ 21 (65)
T PF14522_consen 14 NCASCHSD 21 (65)
T ss_dssp CGCCTSTT
T ss_pred ChhhhCCC
Confidence 59999985
No 93
>PRK11586 napB nitrate reductase cytochrome C550 subunit; Provisional
Probab=33.43 E-value=18 Score=23.27 Aligned_cols=17 Identities=35% Similarity=0.794 Sum_probs=11.1
Q ss_pred HHHHHHHh--hCccccccc
Q 033758 14 AGEKIFKT--KCAQCHTVV 30 (112)
Q Consensus 14 ~G~~lf~~--~C~~CH~~~ 30 (112)
+|.++=.. .|.+||...
T Consensus 72 ~gyqIt~n~N~CL~CH~~~ 90 (149)
T PRK11586 72 EGYQVTTNTNRCLQCHGVE 90 (149)
T ss_pred CCceeccCCCcCccCCCHh
Confidence 45544433 499999865
No 94
>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c
Probab=33.38 E-value=22 Score=20.05 Aligned_cols=31 Identities=19% Similarity=0.485 Sum_probs=20.7
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 033758 69 EEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIA 105 (112)
Q Consensus 69 ~~~~l~~~l~~~~~~~~~~~m~~~~~l~~~ei~~l~a 105 (112)
+++...+|+.+|..... .| + ||++|+++|.+
T Consensus 15 ~~~~re~f~~dp~a~~~----~~-~-Lt~eE~~al~~ 45 (77)
T cd07321 15 KPEVKERFKADPEAVLA----EY-G-LTPEEKAALLA 45 (77)
T ss_pred CHHHHHHHHhCHHHHHH----Hc-C-CCHHHHHHHHc
Confidence 56778888888765432 22 2 56999988753
No 95
>PF04320 DUF469: Protein with unknown function (DUF469); InterPro: IPR007416 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.
Probab=33.18 E-value=61 Score=19.48 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=15.7
Q ss_pred CCCCHHHHHHHHHHHHhhc
Q 033758 93 GLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 93 ~~l~~~ei~~l~ayl~sl~ 111 (112)
+..|++++++|.+||+..+
T Consensus 68 gs~tee~R~~v~~WL~~~~ 86 (101)
T PF04320_consen 68 GSCTEEDRAAVEAWLKARP 86 (101)
T ss_pred CCCCHHHHHHHHHHHHhCC
Confidence 3457999999999998765
No 96
>PHA02902 putative IMV membrane protein; Provisional
Probab=33.16 E-value=52 Score=18.09 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=15.6
Q ss_pred CCCCCCCHHHHHHHHHHHHh
Q 033758 90 VFPGLKKPQDRADLIAYLKE 109 (112)
Q Consensus 90 ~~~~~l~~~ei~~l~ayl~s 109 (112)
.|.+.+|++|++++=.++.+
T Consensus 49 ~F~D~lTpDQirAlHrlvT~ 68 (70)
T PHA02902 49 LFKDSLTPDQIKALHRLVSL 68 (70)
T ss_pred hhhccCCHHHHHHHHHHHhc
Confidence 36777899999998877643
No 97
>PF12408 DUF3666: Ribose-5-phosphate isomerase ; InterPro: IPR022133 This domain family is found in bacteria, and is approximately 50 amino acids in length. The family is found in association with PF02502 from PFAM. There are two completely conserved residues (D and F) that may be functionally important. ; PDB: 3ONO_A 3C5Y_N 2PPW_A.
Probab=32.70 E-value=30 Score=17.86 Aligned_cols=14 Identities=29% Similarity=0.446 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhh
Q 033758 97 PQDRADLIAYLKES 110 (112)
Q Consensus 97 ~~ei~~l~ayl~sl 110 (112)
.-+-..|++|++++
T Consensus 35 ncqd~eI~~yvk~l 48 (48)
T PF12408_consen 35 NCQDEEIAAYVKEL 48 (48)
T ss_dssp H---HHHHHHHHCC
T ss_pred cCCcHHHHHHHHcC
Confidence 33556778888764
No 98
>CHL00037 petA cytochrome f
Probab=32.66 E-value=15 Score=26.44 Aligned_cols=8 Identities=50% Similarity=1.215 Sum_probs=6.5
Q ss_pred hCcccccc
Q 033758 22 KCAQCHTV 29 (112)
Q Consensus 22 ~C~~CH~~ 29 (112)
.|+.||=.
T Consensus 55 VCANCHLA 62 (320)
T CHL00037 55 VCANCHLA 62 (320)
T ss_pred Eeeccccc
Confidence 49999964
No 99
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=31.99 E-value=29 Score=17.18 Aligned_cols=17 Identities=24% Similarity=0.562 Sum_probs=13.5
Q ss_pred HHHHHHHHHhhCccccc
Q 033758 12 PKAGEKIFKTKCAQCHT 28 (112)
Q Consensus 12 ~~~G~~lf~~~C~~CH~ 28 (112)
..+|..+....|..|..
T Consensus 9 LL~G~~ML~~~Cp~C~~ 25 (41)
T PF06677_consen 9 LLQGWTMLDEHCPDCGT 25 (41)
T ss_pred HHHhHhHhcCccCCCCC
Confidence 45788888889999954
No 100
>PRK02693 apocytochrome f; Reviewed
Probab=31.95 E-value=16 Score=26.13 Aligned_cols=8 Identities=50% Similarity=1.215 Sum_probs=6.5
Q ss_pred hCcccccc
Q 033758 22 KCAQCHTV 29 (112)
Q Consensus 22 ~C~~CH~~ 29 (112)
.|+.||=.
T Consensus 48 VCANCHLA 55 (312)
T PRK02693 48 VCANCHLA 55 (312)
T ss_pred Eeeccccc
Confidence 49999964
No 101
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=31.94 E-value=55 Score=18.97 Aligned_cols=21 Identities=14% Similarity=0.112 Sum_probs=16.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhh
Q 033758 90 VFPGLKKPQDRADLIAYLKES 110 (112)
Q Consensus 90 ~~~~~l~~~ei~~l~ayl~sl 110 (112)
.|.+.+|++|++++=.++.+-
T Consensus 47 ~F~D~lTpDQVrAlHRlvTsS 67 (92)
T PHA02681 47 SFEDKMTDDQVRAFHALVTSS 67 (92)
T ss_pred hhhccCCHHHHHHHHHHHhCC
Confidence 367778899999998887653
No 102
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=31.74 E-value=16 Score=23.68 Aligned_cols=8 Identities=38% Similarity=1.364 Sum_probs=6.8
Q ss_pred hCcccccc
Q 033758 22 KCAQCHTV 29 (112)
Q Consensus 22 ~C~~CH~~ 29 (112)
.|+.||-+
T Consensus 86 ACSTCHVi 93 (159)
T KOG3309|consen 86 ACSTCHVI 93 (159)
T ss_pred cccceEEE
Confidence 59999975
No 103
>PF14537 Cytochrom_c3_2: Cytochrome c3; PDB: 1D4C_A 1D4E_A 1D4D_A 2K3V_A 1QO8_D 2P0B_A 2OZY_A 1M64_A 1JRX_A 1QJD_A ....
Probab=30.99 E-value=20 Score=19.48 Aligned_cols=8 Identities=38% Similarity=1.161 Sum_probs=6.6
Q ss_pred hCcccccc
Q 033758 22 KCAQCHTV 29 (112)
Q Consensus 22 ~C~~CH~~ 29 (112)
.|..||+.
T Consensus 8 ~C~~CH~~ 15 (80)
T PF14537_consen 8 NCVDCHGP 15 (80)
T ss_dssp TGGGTSSS
T ss_pred ChhHhCCC
Confidence 69999974
No 104
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=29.23 E-value=20 Score=21.26 Aligned_cols=8 Identities=25% Similarity=0.916 Sum_probs=6.8
Q ss_pred hCcccccc
Q 033758 22 KCAQCHTV 29 (112)
Q Consensus 22 ~C~~CH~~ 29 (112)
+|++||..
T Consensus 44 ~C~TC~v~ 51 (102)
T COG0633 44 ACGTCRVK 51 (102)
T ss_pred ccCccEEE
Confidence 69999975
No 105
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=29.01 E-value=71 Score=19.01 Aligned_cols=18 Identities=17% Similarity=0.080 Sum_probs=13.6
Q ss_pred CCCCCHHHHHHHHHHHHh
Q 033758 92 PGLKKPQDRADLIAYLKE 109 (112)
Q Consensus 92 ~~~l~~~ei~~l~ayl~s 109 (112)
...||++|+.+|++-|..
T Consensus 33 ~r~Ltd~ev~~Va~~L~~ 50 (96)
T PF11829_consen 33 RRRLTDDEVAEVAAELAA 50 (96)
T ss_dssp TTTS-HHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHh
Confidence 355889999999998843
No 106
>CHL00136 rpl31 ribosomal protein L31; Validated
Probab=28.94 E-value=23 Score=19.61 Aligned_cols=10 Identities=10% Similarity=0.012 Sum_probs=7.7
Q ss_pred hhCccccccc
Q 033758 21 TKCAQCHTVV 30 (112)
Q Consensus 21 ~~C~~CH~~~ 30 (112)
..|+.||-..
T Consensus 36 dv~s~~HPfy 45 (68)
T CHL00136 36 DIWSGNHPFY 45 (68)
T ss_pred EeCCCCCccC
Confidence 4699999654
No 107
>PF07102 DUF1364: Protein of unknown function (DUF1364); InterPro: IPR010774 This entry is represented by Bacteriophage 82, YbcO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 95 residues in length. The function of this family is unknown.; PDB: 3G27_A.
Probab=28.80 E-value=12 Score=22.18 Aligned_cols=8 Identities=38% Similarity=1.149 Sum_probs=5.6
Q ss_pred hCcccccc
Q 033758 22 KCAQCHTV 29 (112)
Q Consensus 22 ~C~~CH~~ 29 (112)
.|+.||..
T Consensus 53 aCs~CHd~ 60 (94)
T PF07102_consen 53 ACSACHDE 60 (94)
T ss_dssp E-HHHHHH
T ss_pred hHHHHHHH
Confidence 39999974
No 108
>PF02335 Cytochrom_C552: Cytochrome c552; InterPro: IPR003321 The enzyme cytochrome c nitrite reductase (c552) catalyses the six-electron reduction of nitrite to ammonia as one of the key steps in the biological nitrogen cycle, where it participates in the anaerobic energy metabolism of dissimilatory nitrate ammonification. Cytochrome c nitrite reductase from Sulfurospirillum deleyianum is a functional dimer, with 10 close-packed haem groups of type c and an unusual lysine-coordinated high-spin haem at the active site [].; GO: 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1QDB_B 3TTB_B 3BNJ_A 3BNG_A 1FS8_A 2E80_A 3BNH_A 1FS7_A 2E81_A 3BNF_A ....
Probab=28.68 E-value=28 Score=26.41 Aligned_cols=10 Identities=30% Similarity=1.102 Sum_probs=8.0
Q ss_pred HHhhCccccc
Q 033758 19 FKTKCAQCHT 28 (112)
Q Consensus 19 f~~~C~~CH~ 28 (112)
+...|..||.
T Consensus 271 ~~~sC~~CH~ 280 (434)
T PF02335_consen 271 IENSCQTCHS 280 (434)
T ss_dssp HHHCTTTTST
T ss_pred hhhHHhhhcC
Confidence 4467999997
No 109
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=28.60 E-value=63 Score=18.70 Aligned_cols=14 Identities=7% Similarity=0.318 Sum_probs=12.1
Q ss_pred CHHHHHHHHHHHHh
Q 033758 96 KPQDRADLIAYLKE 109 (112)
Q Consensus 96 ~~~ei~~l~ayl~s 109 (112)
||+|+++.+.|.-+
T Consensus 58 SDeEm~AMlsyy~~ 71 (91)
T cd06395 58 SDEEMKAMLSYYCS 71 (91)
T ss_pred chHHHHHHHHHHHH
Confidence 69999999999754
No 110
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=28.57 E-value=34 Score=17.37 Aligned_cols=13 Identities=15% Similarity=0.404 Sum_probs=9.5
Q ss_pred CCCHHHHHHHHHH
Q 033758 94 LKKPQDRADLIAY 106 (112)
Q Consensus 94 ~l~~~ei~~l~ay 106 (112)
.||++|+.+|-.|
T Consensus 2 fLT~~El~elTG~ 14 (47)
T PF13986_consen 2 FLTDEELQELTGY 14 (47)
T ss_pred CCCHHHHHHHHCC
Confidence 4678888887655
No 111
>PF03264 Cytochrom_NNT: NapC/NirT cytochrome c family, N-terminal region; InterPro: IPR005126 Within the NapC/NirT family of cytochrome c proteins, some members, such as NapC P33932 from SWISSPROT and NirT P24038 from SWISSPROT, bind four haem groups, while others, such as TorC P33226 from SWISSPROT, bind five haems. This family aligns the common N-terminal region that contains four haem-binding C-X(2)-CH motifs.; PDB: 2VR0_F 2J7A_C.
Probab=28.20 E-value=20 Score=23.23 Aligned_cols=18 Identities=33% Similarity=0.709 Sum_probs=11.5
Q ss_pred HHHHHHHHhh----Cccccccc
Q 033758 13 KAGEKIFKTK----CAQCHTVV 30 (112)
Q Consensus 13 ~~G~~lf~~~----C~~CH~~~ 30 (112)
...+..+... |..||...
T Consensus 113 ~~~~~~~~~~~~~~C~~CH~~~ 134 (173)
T PF03264_consen 113 EDSWKRFKANDDSTCLNCHSDL 134 (173)
T ss_dssp -HHHHHHHHH---HHHHHCHHH
T ss_pred HHHHHHHHhhhcccCcccCCCc
Confidence 3445555544 99999864
No 112
>PF11256 DUF3055: Protein of unknown function (DUF3055); InterPro: IPR021415 This family of proteins with unknown function appear to be restricted to Firmicutes.
Probab=27.88 E-value=69 Score=18.47 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=13.3
Q ss_pred CHHHHHHHHHHHHhh
Q 033758 96 KPQDRADLIAYLKES 110 (112)
Q Consensus 96 ~~~ei~~l~ayl~sl 110 (112)
+++|.++|.+||..+
T Consensus 67 ~~eea~eL~~fl~~~ 81 (81)
T PF11256_consen 67 SEEEAEELREFLYEL 81 (81)
T ss_pred CHHHHHHHHHHHhhC
Confidence 799999999999764
No 113
>PRK00019 rpmE 50S ribosomal protein L31; Reviewed
Probab=27.58 E-value=25 Score=19.71 Aligned_cols=10 Identities=30% Similarity=0.966 Sum_probs=7.7
Q ss_pred hhCccccccc
Q 033758 21 TKCAQCHTVV 30 (112)
Q Consensus 21 ~~C~~CH~~~ 30 (112)
..|+.||-..
T Consensus 36 di~s~~HPFy 45 (72)
T PRK00019 36 DVCSKCHPFY 45 (72)
T ss_pred EeCCCCCCcC
Confidence 4699999654
No 114
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=26.61 E-value=71 Score=15.49 Aligned_cols=13 Identities=31% Similarity=0.460 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhhc
Q 033758 99 DRADLIAYLKEST 111 (112)
Q Consensus 99 ei~~l~ayl~sl~ 111 (112)
+++.++.||++.+
T Consensus 2 d~~~~~~~l~~~Q 14 (44)
T PF00432_consen 2 DVEKLIRFLLSCQ 14 (44)
T ss_dssp HHHHHHHHHHHTB
T ss_pred CHHHHHHHHHHHC
Confidence 5778888887653
No 115
>PF15161 Neuropep_like: Neuropeptide-like
Probab=26.05 E-value=21 Score=19.13 Aligned_cols=9 Identities=33% Similarity=1.043 Sum_probs=7.1
Q ss_pred hCccccccc
Q 033758 22 KCAQCHTVV 30 (112)
Q Consensus 22 ~C~~CH~~~ 30 (112)
-|..||...
T Consensus 15 PCVDCHAFe 23 (65)
T PF15161_consen 15 PCVDCHAFE 23 (65)
T ss_pred CchhhHHHH
Confidence 599999753
No 116
>cd08168 Cytochrom_C3 Heme-binding domain of the class III cytochrome C family and related proteins. This alignment models heme binding core motifs as encountered in the cytochrome C3 family and related proteins. Cytochrome C3 is a tetraheme protein found in sulfate-reducing bacteria which use either thiosulfate or sulfate as the ultimate electron acceptors. C3 is an integral part of a complex electron transfer chain. The model also contains triheme cytochromes C7 which function in electron transfer during Fe(III) respiration by Geobacter sulfurreducens (PpcA, PpcB, PpcC, PpcD, and PpcE) and four repeated core motifs as found in the 16-heme cytochrome C HmcA of Desulfovibrio vulgaris Hildenborough which plays a role in electron transfer through the membrane following periplasmic oxidation of hydrogen (resulting in sulfate reduction in the cytoplasm).
Probab=26.03 E-value=19 Score=20.35 Aligned_cols=14 Identities=29% Similarity=0.831 Sum_probs=8.8
Q ss_pred HHHHhhCccccccc
Q 033758 17 KIFKTKCAQCHTVV 30 (112)
Q Consensus 17 ~lf~~~C~~CH~~~ 30 (112)
..|-..|..||..-
T Consensus 55 ~a~H~~C~~CH~~~ 68 (85)
T cd08168 55 DAFHNSCIGCHKEM 68 (85)
T ss_pred HHHHHhHHHHHHHH
Confidence 33444688888754
No 117
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=25.84 E-value=66 Score=20.35 Aligned_cols=17 Identities=24% Similarity=0.493 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHhhcC
Q 033758 96 KPQDRADLIAYLKESTA 112 (112)
Q Consensus 96 ~~~ei~~l~ayl~sl~~ 112 (112)
+++++++++++++++++
T Consensus 107 ~~~~iD~fi~~v~~~p~ 123 (149)
T PF14566_consen 107 DPEDIDAFINFVKSLPK 123 (149)
T ss_dssp -HHHHHHHHHHHHTS-T
T ss_pred CHHHHHHHHHHHHhCCC
Confidence 59999999999999863
No 118
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=25.81 E-value=78 Score=15.21 Aligned_cols=15 Identities=40% Similarity=0.550 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhhc
Q 033758 97 PQDRADLIAYLKEST 111 (112)
Q Consensus 97 ~~ei~~l~ayl~sl~ 111 (112)
++|++.|++|-+++.
T Consensus 2 ~~d~~aLl~~k~~l~ 16 (43)
T PF08263_consen 2 NQDRQALLAFKKSLN 16 (43)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred cHHHHHHHHHHHhcc
Confidence 678899999887764
No 119
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=25.73 E-value=1.4e+02 Score=19.97 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=23.2
Q ss_pred HHHHhCCCCCCCCCCCCCCC----CCCHHHHHHHHHHHHhhc
Q 033758 74 YDYLLNPKKYIPGTKMVFPG----LKKPQDRADLIAYLKEST 111 (112)
Q Consensus 74 ~~~l~~~~~~~~~~~m~~~~----~l~~~ei~~l~ayl~sl~ 111 (112)
..++.+|....+ ..+|.+ -.+|.|+.+|+.||..+.
T Consensus 140 ~~~~~~P~N~i~--I~~f~~~~~~~~~D~eL~~L~~yL~~la 179 (195)
T TIGR02245 140 RNFLMNPQNGLK--IRPFKKAHANRGTDQELLKLTQYLKTIA 179 (195)
T ss_pred HHHhcCCCCccc--cCCccccCCCCcccHHHHHHHHHHHHHh
Confidence 455556655433 224432 236999999999999875
No 120
>PRK01397 50S ribosomal protein L31; Provisional
Probab=25.59 E-value=29 Score=19.81 Aligned_cols=11 Identities=9% Similarity=-0.188 Sum_probs=8.1
Q ss_pred HhhCccccccc
Q 033758 20 KTKCAQCHTVV 30 (112)
Q Consensus 20 ~~~C~~CH~~~ 30 (112)
...|+.||-..
T Consensus 34 vdi~s~~HPFy 44 (78)
T PRK01397 34 MDVDFRKHPAW 44 (78)
T ss_pred EEeCCCCCCcC
Confidence 34699999653
No 121
>TIGR03823 FliZ flagellar regulatory protein FliZ. FliZ is involved in the regulation of flagellar assembly and possibly also the down-regulation of the motile phenotype. FliZ interacts with the flagellar translational activator FlhCD complex.
Probab=25.44 E-value=22 Score=23.11 Aligned_cols=10 Identities=40% Similarity=1.258 Sum_probs=7.8
Q ss_pred HhhCcccccc
Q 033758 20 KTKCAQCHTV 29 (112)
Q Consensus 20 ~~~C~~CH~~ 29 (112)
+++|+.||..
T Consensus 22 QthCshC~K~ 31 (168)
T TIGR03823 22 QTHCSHCHKL 31 (168)
T ss_pred cchhhhhcch
Confidence 3479999975
No 122
>PF06252 DUF1018: Protein of unknown function (DUF1018); InterPro: IPR009363 This family consists of several bacterial and phage proteins, related to Gp16 of phage Mu, of unknown function.
Probab=25.31 E-value=74 Score=19.26 Aligned_cols=14 Identities=14% Similarity=0.143 Sum_probs=7.0
Q ss_pred CHHHHHHHHHHHHh
Q 033758 96 KPQDRADLIAYLKE 109 (112)
Q Consensus 96 ~~~ei~~l~ayl~s 109 (112)
+..++.-|-+-...
T Consensus 56 ~~~q~~KI~aLw~~ 69 (119)
T PF06252_consen 56 TSAQLRKIRALWKQ 69 (119)
T ss_pred chHHHHHHHHHHHH
Confidence 35555555554443
No 123
>cd07921 PCA_45_Doxase_A_like Subunit A of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and similar enzymes. This subfamily includes the A subunit of protocatechuate (PCA) 4,5-dioxygenase (LigAB) and two subfamilies of unknown function. The A subunit is the smaller, non-catalytic subunit of LigAB. PCA 4,5-dioxygenase catalyzes the oxidization and subsequent ring-opening of PCA (or 3,4-dihydroxybenzoic acid), which is an intermediate in the breakdown of lignin and other compounds. PCA 4,5-dioxygenase is one of the aromatic ring opening dioxygenases which play key roles in the degradation of aromatic compounds. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit.
Probab=25.04 E-value=43 Score=20.32 Aligned_cols=31 Identities=10% Similarity=0.287 Sum_probs=20.0
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 033758 69 EEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIA 105 (112)
Q Consensus 69 ~~~~l~~~l~~~~~~~~~~~m~~~~~l~~~ei~~l~a 105 (112)
++++..+|+.++..... .| + ||++|+++|.+
T Consensus 25 ~a~~Re~F~aD~eAy~~----~~-g-LTeEe~~AV~~ 55 (106)
T cd07921 25 KAENREAFKADEEAYCD----KF-G-LTEEQKQAVLD 55 (106)
T ss_pred CHHHHHHHHhCHHHHHH----Hc-C-CCHHHHHHHHh
Confidence 46677788777765432 12 2 56999988753
No 124
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=24.72 E-value=49 Score=15.65 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=11.1
Q ss_pred CHHHHHHHHHHHHhhc
Q 033758 96 KPQDRADLIAYLKEST 111 (112)
Q Consensus 96 ~~~ei~~l~ayl~sl~ 111 (112)
|.+|.+|-+.||.++.
T Consensus 6 t~eEF~dp~~yi~~i~ 21 (34)
T PF02375_consen 6 TMEEFKDPIKYISSIE 21 (34)
T ss_dssp -HHHHS-HHHHHHHHH
T ss_pred CHHHHhCHHHHHHHHH
Confidence 5788888899987653
No 125
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=24.54 E-value=50 Score=16.39 Aligned_cols=16 Identities=19% Similarity=0.335 Sum_probs=13.0
Q ss_pred CHHHHHHHHHHHHhhc
Q 033758 96 KPQDRADLIAYLKEST 111 (112)
Q Consensus 96 ~~~ei~~l~ayl~sl~ 111 (112)
|.+|..|-+.|+.++.
T Consensus 8 t~eEF~Dp~~yi~~i~ 23 (42)
T smart00545 8 TMEEFKDPLAYISKIR 23 (42)
T ss_pred CHHHHHCHHHHHHHHH
Confidence 6889999999987753
No 126
>PRK11582 flagella biosynthesis protein FliZ; Provisional
Probab=23.68 E-value=26 Score=22.86 Aligned_cols=10 Identities=40% Similarity=1.122 Sum_probs=7.8
Q ss_pred HhhCcccccc
Q 033758 20 KTKCAQCHTV 29 (112)
Q Consensus 20 ~~~C~~CH~~ 29 (112)
+++|+.||..
T Consensus 22 QthCshC~K~ 31 (169)
T PRK11582 22 QTHCAHCRKL 31 (169)
T ss_pred ccchhhhccc
Confidence 3479999975
No 127
>PF10955 DUF2757: Protein of unknown function (DUF2757); InterPro: IPR020115 This entry contains proteins with no known function.
Probab=23.56 E-value=22 Score=20.20 Aligned_cols=13 Identities=38% Similarity=0.846 Sum_probs=10.6
Q ss_pred CCCHHHHHHHHHH
Q 033758 94 LKKPQDRADLIAY 106 (112)
Q Consensus 94 ~l~~~ei~~l~ay 106 (112)
.||++|++++|.|
T Consensus 31 ~Lt~eEr~dmI~~ 43 (76)
T PF10955_consen 31 HLTPEERQDMISY 43 (76)
T ss_pred cCCHHHHhhheEE
Confidence 4679999999876
No 128
>PF02276 CytoC_RC: Photosynthetic reaction centre cytochrome C subunit; InterPro: IPR003158 The photosynthetic apparatus in non-oxygenic bacteria consists of light-harvesting (LH) protein-pigment complexes LH1 and LH2, which use carotenoid and bacteriochlorophyll as primary donors []. LH1 acts as the energy collection hub, temporarily storing it before its transfer to the photosynthetic reaction centre (RC) []. Electrons are transferred from the primary donor via an intermediate acceptor (bacteriopheophytin) to the primary acceptor (quinine Qa), and finally to the secondary acceptor (quinone Qb), resulting in the formation of ubiquinol QbH2. RC uses the excitation energy to shuffle electrons across the membrane, transferring them via ubiquinol to the cytochrome bc1 complex in order to establish a proton gradient across the membrane, which is used by ATP synthetase to form ATP [, , ]. The core complex is anchored in the cell membrane, consisting of one unit of RC surrounded by LH1; in some species there may be additional subunits []. RC consists of three subunits: L (light), M (medium), and H (heavy). Subunits L and M provide the scaffolding for the chromophore, while subunit H contains a cytoplasmic domain []. In Rhodopseudomonas viridis, there is also a non-membranous tetrahaem cytochrome (4Hcyt) subunit on the periplasmic surface. In the purple bacterium Rhodocyclus gelatinosus (Rhodopseudomonas gelatinosa), a high potential Fe-S protein (HiPIP) acts as an electron donor to reaction centre-bound cyt bc1 under anaerobic conditions in the light, while cyt c acts as a soluble electron carrier under aerobic conditions in the dark in order to re-reduce the oxidized electron donor [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0019684 photosynthesis, light reaction, 0030077 plasma membrane light-harvesting complex; PDB: 7PRC_C 6PRC_C 2X5V_C 2X5U_C 2WJM_C 2JBL_C 3T6D_C 3D38_C 2WJN_C 1VRN_C ....
Probab=23.35 E-value=16 Score=26.45 Aligned_cols=10 Identities=50% Similarity=1.052 Sum_probs=6.2
Q ss_pred HHhhCccccc
Q 033758 19 FKTKCAQCHT 28 (112)
Q Consensus 19 f~~~C~~CH~ 28 (112)
..-+|+.||.
T Consensus 285 ~KvnC~TCHq 294 (314)
T PF02276_consen 285 PKVNCATCHQ 294 (314)
T ss_dssp -B--HHHHHT
T ss_pred cccchhhhhc
Confidence 4457999997
No 129
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=23.32 E-value=30 Score=24.08 Aligned_cols=8 Identities=38% Similarity=1.020 Sum_probs=6.6
Q ss_pred hCcccccc
Q 033758 22 KCAQCHTV 29 (112)
Q Consensus 22 ~C~~CH~~ 29 (112)
.|++||-.
T Consensus 199 ~C~GC~m~ 206 (239)
T COG1579 199 VCGGCHMK 206 (239)
T ss_pred cccCCeee
Confidence 49999964
No 130
>PF01197 Ribosomal_L31: Ribosomal protein L31; InterPro: IPR002150 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L31 is one of the proteins from the large ribosomal subunit. L31 is a protein of 66 to 97 amino-acid residues which has only been found so far in bacteria and in some plant and algal chloroplasts.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3D5D_4 3PYO_1 3D5B_4 3PYV_1 3PYT_1 3MRZ_1 3MS1_1 3PYR_1 3F1F_4 3F1H_4 ....
Probab=22.73 E-value=37 Score=18.78 Aligned_cols=10 Identities=30% Similarity=0.926 Sum_probs=7.7
Q ss_pred hhCccccccc
Q 033758 21 TKCAQCHTVV 30 (112)
Q Consensus 21 ~~C~~CH~~~ 30 (112)
..|+.||-..
T Consensus 37 di~s~~HPfy 46 (69)
T PF01197_consen 37 DICSNCHPFY 46 (69)
T ss_dssp CSCSSSSCTT
T ss_pred eecCCCCEEE
Confidence 4699999754
No 131
>PRK00528 rpmE 50S ribosomal protein L31; Reviewed
Probab=22.56 E-value=36 Score=18.97 Aligned_cols=11 Identities=9% Similarity=-0.164 Sum_probs=8.2
Q ss_pred HhhCccccccc
Q 033758 20 KTKCAQCHTVV 30 (112)
Q Consensus 20 ~~~C~~CH~~~ 30 (112)
...|+.||-..
T Consensus 37 vdv~s~~HPfy 47 (71)
T PRK00528 37 LDIDSGNHPAW 47 (71)
T ss_pred EEECCCCCccE
Confidence 34699999654
No 132
>PF15332 LIME1: Lck-interacting transmembrane adapter 1
Probab=22.54 E-value=35 Score=23.15 Aligned_cols=8 Identities=38% Similarity=1.020 Sum_probs=6.7
Q ss_pred Cccccccc
Q 033758 23 CAQCHTVV 30 (112)
Q Consensus 23 C~~CH~~~ 30 (112)
|.+||..+
T Consensus 2 CtaC~R~d 9 (228)
T PF15332_consen 2 CTACHRPD 9 (228)
T ss_pred cccccCch
Confidence 99999854
No 133
>COG3043 NapB Nitrate reductase cytochrome c-type subunit [Energy production and conversion]
Probab=22.36 E-value=60 Score=20.95 Aligned_cols=8 Identities=50% Similarity=1.481 Sum_probs=5.5
Q ss_pred hCcccccc
Q 033758 22 KCAQCHTV 29 (112)
Q Consensus 22 ~C~~CH~~ 29 (112)
.|-+||+.
T Consensus 88 ~CLsCH~~ 95 (155)
T COG3043 88 RCLSCHSV 95 (155)
T ss_pred hhhhccCH
Confidence 37777774
No 134
>PRK11125 nrfA cytochrome c nitrite reductase subunit c552; Provisional
Probab=22.11 E-value=31 Score=26.59 Aligned_cols=10 Identities=60% Similarity=1.404 Sum_probs=8.2
Q ss_pred HHhhCccccc
Q 033758 19 FKTKCAQCHT 28 (112)
Q Consensus 19 f~~~C~~CH~ 28 (112)
+...|..||.
T Consensus 311 ~~~~C~~CH~ 320 (480)
T PRK11125 311 FDQTCANCHT 320 (480)
T ss_pred HHHHHHhCCC
Confidence 5567999997
No 135
>PRK11659 cytochrome c nitrite reductase pentaheme subunit; Provisional
Probab=21.71 E-value=29 Score=23.02 Aligned_cols=10 Identities=40% Similarity=1.079 Sum_probs=8.4
Q ss_pred hCcccccccC
Q 033758 22 KCAQCHTVVK 31 (112)
Q Consensus 22 ~C~~CH~~~~ 31 (112)
.|..||++-+
T Consensus 134 ~C~~CH~~H~ 143 (183)
T PRK11659 134 TCASCHSLHP 143 (183)
T ss_pred chhhhhhccc
Confidence 5999999864
No 136
>PF03892 NapB: Nitrate reductase cytochrome c-type subunit (NapB); InterPro: IPR005591 The napB gene encodes a dihaem cytochrome c, the small subunit of a heterodimeric periplasmic nitrate reductase [].; PDB: 3O5A_B 3ML1_B 1OGY_L 1JNI_A.
Probab=21.70 E-value=33 Score=21.70 Aligned_cols=9 Identities=44% Similarity=0.951 Sum_probs=5.0
Q ss_pred hCccccccc
Q 033758 22 KCAQCHTVV 30 (112)
Q Consensus 22 ~C~~CH~~~ 30 (112)
.|..||..-
T Consensus 111 fC~qCHvpQ 119 (133)
T PF03892_consen 111 FCTQCHVPQ 119 (133)
T ss_dssp SGGGT--B-
T ss_pred eeccccCcc
Confidence 399999763
No 137
>TIGR00105 L31 ribosomal protein L31. This family consists exclusively of bacterial (and organellar) 50S ribosomal protein L31. In some species, such as Bacillus subtilis, this protein exists in two forms (RpmE and YtiA), one of which (RpmE) contains a pair of motifs, CXC and CXXC, for binding zinc.
Probab=21.62 E-value=38 Score=18.66 Aligned_cols=10 Identities=30% Similarity=0.952 Sum_probs=7.6
Q ss_pred hhCccccccc
Q 033758 21 TKCAQCHTVV 30 (112)
Q Consensus 21 ~~C~~CH~~~ 30 (112)
..|+.||-..
T Consensus 36 di~s~~HPfy 45 (68)
T TIGR00105 36 DICSKCHPFY 45 (68)
T ss_pred EECCCCcccC
Confidence 4699999654
No 138
>PRK01678 rpmE2 50S ribosomal protein L31 type B; Reviewed
Probab=21.57 E-value=38 Score=19.76 Aligned_cols=11 Identities=9% Similarity=0.072 Sum_probs=8.1
Q ss_pred HhhCccccccc
Q 033758 20 KTKCAQCHTVV 30 (112)
Q Consensus 20 ~~~C~~CH~~~ 30 (112)
...|+.||-..
T Consensus 48 vdi~S~~HPFy 58 (87)
T PRK01678 48 VEISSASHPFY 58 (87)
T ss_pred EEeCCCCCCcC
Confidence 34699999654
No 139
>PF13099 DUF3944: Domain of unknown function (DUF3944)
Probab=21.50 E-value=1.1e+02 Score=14.67 Aligned_cols=15 Identities=27% Similarity=0.275 Sum_probs=12.1
Q ss_pred CCCHHHHHHHHHHHH
Q 033758 94 LKKPQDRADLIAYLK 108 (112)
Q Consensus 94 ~l~~~ei~~l~ayl~ 108 (112)
..+++|+++|+.+|.
T Consensus 12 ~cs~edL~~L~~~Lt 26 (35)
T PF13099_consen 12 ECSNEDLKDLVDILT 26 (35)
T ss_pred HCCHHHHHHHHHHHh
Confidence 347999999998875
No 140
>COG3183 Predicted restriction endonuclease [Defense mechanisms]
Probab=21.04 E-value=25 Score=24.82 Aligned_cols=9 Identities=44% Similarity=1.221 Sum_probs=7.4
Q ss_pred hCccccccc
Q 033758 22 KCAQCHTVV 30 (112)
Q Consensus 22 ~C~~CH~~~ 30 (112)
.|+.||.+-
T Consensus 243 lCpNCH~mv 251 (272)
T COG3183 243 LCPNCHKMV 251 (272)
T ss_pred cCccHHHHH
Confidence 599999863
No 141
>TIGR03146 cyt_nit_nrfB cytochrome c nitrite reductase, pentaheme subunit. Members of this protein family contain five copies of the CXXCH heme-binding motif, and are the NrfB component of the multisubunit enzyme, cytochrome c nitrite reductase.
Probab=20.89 E-value=33 Score=21.69 Aligned_cols=10 Identities=50% Similarity=1.112 Sum_probs=8.1
Q ss_pred hCcccccccC
Q 033758 22 KCAQCHTVVK 31 (112)
Q Consensus 22 ~C~~CH~~~~ 31 (112)
.|..||++-+
T Consensus 111 ~C~~CH~~H~ 120 (145)
T TIGR03146 111 TCASCHTLHP 120 (145)
T ss_pred Chhhhccccc
Confidence 4999998764
No 142
>COG0254 RpmE Ribosomal protein L31 [Translation, ribosomal structure and biogenesis]
Probab=20.68 E-value=41 Score=19.06 Aligned_cols=10 Identities=30% Similarity=0.966 Sum_probs=7.7
Q ss_pred hhCccccccc
Q 033758 21 TKCAQCHTVV 30 (112)
Q Consensus 21 ~~C~~CH~~~ 30 (112)
..|+.||-..
T Consensus 38 dV~s~~HPFy 47 (75)
T COG0254 38 DVCSKCHPFY 47 (75)
T ss_pred EeCCCCCCcC
Confidence 4699999654
No 143
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=20.51 E-value=35 Score=21.81 Aligned_cols=8 Identities=50% Similarity=1.323 Sum_probs=6.4
Q ss_pred hCcccccc
Q 033758 22 KCAQCHTV 29 (112)
Q Consensus 22 ~C~~CH~~ 29 (112)
.|+.||-.
T Consensus 79 ~CgtC~V~ 86 (143)
T PTZ00490 79 QCATCHVY 86 (143)
T ss_pred EeCCCEEE
Confidence 49999964
No 144
>TIGR03631 bact_S13 30S ribosomal protein S13. This model describes bacterial ribosomal protein S13, to the exclusion of the homologous archaeal S13P and eukaryotic ribosomal protein S18. This model identifies some (but not all) instances of chloroplast and mitochondrial S13, which is of bacterial type.
Probab=20.39 E-value=1.2e+02 Score=18.53 Aligned_cols=16 Identities=0% Similarity=-0.087 Sum_probs=13.6
Q ss_pred CCCCHHHHHHHHHHHH
Q 033758 93 GLKKPQDRADLIAYLK 108 (112)
Q Consensus 93 ~~l~~~ei~~l~ayl~ 108 (112)
+.|+++|+..|..+|.
T Consensus 44 ~~L~~~qi~~l~~~l~ 59 (113)
T TIGR03631 44 KDLTEEELNAIREEIE 59 (113)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 4567999999999985
No 145
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=20.33 E-value=73 Score=13.31 Aligned_cols=17 Identities=12% Similarity=0.239 Sum_probs=12.0
Q ss_pred CHHHHHHHHHhhCcccc
Q 033758 11 NPKAGEKIFKTKCAQCH 27 (112)
Q Consensus 11 ~~~~G~~lf~~~C~~CH 27 (112)
+....+.+|.+.+..|+
T Consensus 2 ~~~~~r~i~e~~l~~~~ 18 (33)
T smart00386 2 DIERARKIYERALEKFP 18 (33)
T ss_pred cHHHHHHHHHHHHHHCC
Confidence 45677888887666665
No 146
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=20.18 E-value=1e+02 Score=19.79 Aligned_cols=17 Identities=35% Similarity=0.380 Sum_probs=13.7
Q ss_pred CCCCHHHHHHHHHHHHh
Q 033758 93 GLKKPQDRADLIAYLKE 109 (112)
Q Consensus 93 ~~l~~~ei~~l~ayl~s 109 (112)
+-+|.+|++.|.+||+.
T Consensus 31 ~elT~eEl~lv~~ylkR 47 (146)
T PF07295_consen 31 GELTREELALVSAYLKR 47 (146)
T ss_pred hhcCHHHHHHHHHHHHH
Confidence 34679999999999963
No 147
>PF15182 OTOS: Otospiralin
Probab=20.13 E-value=1.6e+02 Score=16.14 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=16.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhc
Q 033758 88 KMVFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 88 ~m~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
.||+=.. |..|.+.-|+|+++|.
T Consensus 16 a~PYWPf-stsDFW~YveyFrtlG 38 (69)
T PF15182_consen 16 AMPYWPF-STSDFWNYVEYFRTLG 38 (69)
T ss_pred cCCcCCc-cchHHHHHHHHHHHhc
Confidence 4543333 3779999999999874
No 148
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=20.07 E-value=1.2e+02 Score=16.54 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=12.2
Q ss_pred CHHHHHHHHHHHHhh
Q 033758 96 KPQDRADLIAYLKES 110 (112)
Q Consensus 96 ~~~ei~~l~ayl~sl 110 (112)
++++++..++||+..
T Consensus 55 ~~~~~~~a~~~L~~~ 69 (76)
T PF09383_consen 55 DDEEIEKAIAYLREQ 69 (76)
T ss_dssp -HHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC
Confidence 578899999999864
Done!