BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033759
MASSSNSSQQEAVMRKQNNGPPYKFLVPLIYAPVLPLIRIGLRKNPVVRDRLFTAVLAGA
FAHGFYLVYPLFYSIDCFAGQFNCWFFYMVDYLLIGNYIAPLHVLLMCSILY

High Scoring Gene Products

Symbol, full name Information P value
AT1G68680 protein from Arabidopsis thaliana 1.7e-18

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033759
        (112 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2026930 - symbol:AT1G68680 "AT1G68680" species...   223  1.7e-18   1


>TAIR|locus:2026930 [details] [associations]
            symbol:AT1G68680 "AT1G68680" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005747 "mitochondrial respiratory chain complex
            I" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
            [GO:0009853 "photorespiration" evidence=RCA] EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0005747 EMBL:AY088271
            EMBL:BT024531 IPI:IPI00516730 RefSeq:NP_564939.1 UniGene:At.35496
            IntAct:Q8L9R6 STRING:Q8L9R6 PaxDb:Q8L9R6 PRIDE:Q8L9R6
            EnsemblPlants:AT1G68680.1 GeneID:843198 KEGG:ath:AT1G68680
            TAIR:At1g68680 eggNOG:NOG322076 HOGENOM:HOG000029107
            InParanoid:Q8L9R6 OMA:FAHGFYL PhylomeDB:Q8L9R6
            ProtClustDB:CLSN2689087 Genevestigator:Q8L9R6 Uniprot:Q8L9R6
        Length = 75

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 46/72 (63%), Positives = 54/72 (75%)

Query:     1 MASSSNSSQQEAVMRKQNNGPPYKFLVPLIYAPVLPLIRIGLRKNPVVRDRLFTAVLAGA 60
             MASSS+ S+   VM ++  G P KFLVPLIYAP LPLIR+ LR  PV+RDRLF  VL GA
Sbjct:     1 MASSSDPSKP--VMERKKKGAPIKFLVPLIYAPALPLIRLSLRHKPVLRDRLFGLVLVGA 58

Query:    61 FAHGFYLVYPLF 72
             FAHGFYLV  ++
Sbjct:    59 FAHGFYLVTDIY 70


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.332   0.146   0.470    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      112       112   0.00091  102 3  11 21  0.49    29
                                                     29  0.43    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  540 (57 KB)
  Total size of DFA:  117 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.15u 0.11s 12.26t   Elapsed:  00:00:00
  Total cpu time:  12.15u 0.11s 12.26t   Elapsed:  00:00:00
  Start:  Fri May 10 03:08:09 2013   End:  Fri May 10 03:08:09 2013

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