Query         033759
Match_columns 112
No_of_seqs    17 out of 19
Neff          2.1 
Searched_HMMs 46136
Date          Fri Mar 29 05:59:08 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033759.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033759hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PF07966 A1_Propeptide:  A1 Pro  65.4     2.9 6.2E-05   23.7   0.6   17   37-53      1-17  (29)
  2 PF09928 DUF2160:  Predicted sm  53.7     9.1  0.0002   27.5   1.6   19   49-67     45-63  (88)
  3 PRK00972 tetrahydromethanopter  50.7      13 0.00028   31.6   2.3   63   23-90     65-127 (292)
  4 KOG3151 26S proteasome regulat  47.1     8.5 0.00019   32.2   0.7   51   49-106    56-123 (260)
  5 PF09443 CFC:  Cripto_Frl-1_Cry  44.2     8.6 0.00019   23.6   0.3   24   59-82      2-31  (36)
  6 COG5477 Predicted small integr  36.7      18  0.0004   26.5   1.1   19   49-67     54-72  (97)
  7 PF10801 DUF2537:  Protein of u  36.4      31 0.00067   24.5   2.1   21   41-61     53-73  (84)
  8 PF04991 LicD:  LicD family;  I  30.4      12 0.00026   26.5  -0.7   20   48-67      6-25  (205)
  9 PF11868 DUF3388:  Protein of u  29.9      28  0.0006   28.2   1.1   22   44-72      5-26  (192)
 10 smart00794 AgrD Staphylococcal  29.5     9.5  0.0002   24.4  -1.3   22   67-88     10-31  (45)
 11 COG4059 MtrE Tetrahydromethano  25.8      30 0.00064   29.5   0.7   31   54-85     92-122 (304)
 12 TIGR00766 ribonuclease, putati  24.9 1.3E+02  0.0028   22.9   3.9   60   38-98    186-255 (263)
 13 PF04206 MtrE:  Tetrahydrometha  23.4      66  0.0014   27.2   2.3   63   23-90     58-121 (269)
 14 KOG2292 Oligosaccharyltransfer  22.1      22 0.00048   33.4  -0.8   39   68-107   165-229 (751)
 15 PF05931 AgrD:  Staphylococcal   20.7      16 0.00036   23.2  -1.4   22   67-88     10-31  (45)
 16 COG3008 PqiB Paraquat-inducibl  20.1      26 0.00056   32.0  -0.8   32    1-38      1-32  (553)

No 1  
>PF07966 A1_Propeptide:  A1 Propeptide ;  InterPro: IPR012848 Most eukaryotic endopeptidases (MEROPS peptidase family A1) are synthesised with signal and propeptides. The animal pepsin-like endopeptidase propeptides form a distinct family of propeptides, which contain a conserved motif approximately 30 residues long. In pepsinogen A, the first 11 residues of the mature pepsin sequence are displaced by residues of the propeptide. The propeptide contains two helices that block the active site cleft, in particular the conserved Asp11 residue, in pepsin, hydrogen bonds to a conserved Arg residue in the propeptide. This hydrogen bond stabilises the propeptide conformation and is probably responsible for triggering the conversion of pepsinogen to pepsin under acidic conditions [, ]. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1AVF_Q 1HTR_P 3PSG_A 2PSG_A 3VCM_Q 1TZS_P.
Probab=65.37  E-value=2.9  Score=23.74  Aligned_cols=17  Identities=41%  Similarity=0.569  Sum_probs=11.6

Q ss_pred             eeeeccCCCchhhHHHH
Q 033759           37 LIRIGLRKNPVVRDRLF   53 (112)
Q Consensus        37 LIRIglrk~PvLRdrLF   53 (112)
                      ++||.++|.+.+|.+|=
T Consensus         1 l~rIPL~K~kS~R~~L~   17 (29)
T PF07966_consen    1 LVRIPLKKFKSMRETLR   17 (29)
T ss_dssp             -EEEEEEE---HHHHHH
T ss_pred             CEEEeccCCchHHHHHH
Confidence            58999999999999874


No 2  
>PF09928 DUF2160:  Predicted small integral membrane protein (DUF2160);  InterPro: IPR018678  The members of this family of hypothetical prokaryotic proteins have no known function. It is thought that they are transmembrane proteins, but their function has not been inferred yet. 
Probab=53.73  E-value=9.1  Score=27.49  Aligned_cols=19  Identities=47%  Similarity=0.747  Sum_probs=16.3

Q ss_pred             hHHHHHHHHHHHHhhhcee
Q 033759           49 RDRLFTAVLAGAFAHGFYL   67 (112)
Q Consensus        49 RdrLF~~vLagAFaHG~YL   67 (112)
                      -||||-+.|+.||.|=..+
T Consensus        45 GDRLFIsLL~sA~I~L~Wl   63 (88)
T PF09928_consen   45 GDRLFISLLGSAFIHLAWL   63 (88)
T ss_pred             cchhHHHHHHHHHHHHHHH
Confidence            5999999999999995543


No 3  
>PRK00972 tetrahydromethanopterin S-methyltransferase subunit E; Provisional
Probab=50.68  E-value=13  Score=31.64  Aligned_cols=63  Identities=22%  Similarity=0.326  Sum_probs=43.2

Q ss_pred             ceehhhhhhhcccceeeeccCCCchhhHHHHHHHHHHHHhhhceeccccccchhhhccchhhHHHHHH
Q 033759           23 YKFLVPLIYAPVLPLIRIGLRKNPVVRDRLFTAVLAGAFAHGFYLVYPLFYSIDCFAGQFNCWFFYMV   90 (112)
Q Consensus        23 ~kfLvPLiyAPvLpLIRIglrk~PvLRdrLF~~vLagAFaHG~YLlt~~Y~~~d~~~~~~~~~~~~~~   90 (112)
                      |-+..-+..+=..-++..+  -||++  .+--+.+.+|+.||.|-.|---+.+.+-+. ||-+.|.=+
T Consensus        65 ygl~~ai~g~vA~~lm~~~--~~~vl--Ai~~Ga~vaa~vhg~ya~taylGR~asq~~-F~QPvylDv  127 (292)
T PRK00972         65 YGLWCAIAGAVAWALMAFG--LNPVL--AIIVGAGVAALVHGVYATTAYLGRIASQSK-FGQPVYLDV  127 (292)
T ss_pred             hHHHHHHHHHHHHHHHHcC--ccHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-cCCceeHHH
Confidence            3334444444444555444  45888  566778889999999999988888887665 888876533


No 4  
>KOG3151 consensus 26S proteasome regulatory complex, subunit RPN12/PSMD8 [Posttranslational modification, protein turnover, chaperones]
Probab=47.10  E-value=8.5  Score=32.22  Aligned_cols=51  Identities=33%  Similarity=0.445  Sum_probs=37.4

Q ss_pred             hHHHHHHHHHHHHhhhceeccccccchhhhccchhhHHHHH-----------------HHHHHHhchhhhHHHHH
Q 033759           49 RDRLFTAVLAGAFAHGFYLVYPLFYSIDCFAGQFNCWFFYM-----------------VDYLLIGNYIAPLHVLL  106 (112)
Q Consensus        49 RdrLF~~vLagAFaHG~YLlt~~Y~~~d~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~  106 (112)
                      ||-+=.+|+..       +.|+-|++||.+..|.+|++|--                 .=|||-+|-||-.|..|
T Consensus        56 R~ilEi~vl~S-------I~t~D~~sFerY~~Qlk~YY~d~~~~l~~S~~~~~l~GLnLL~LLsqNRiaeFHteL  123 (260)
T KOG3151|consen   56 RDILEIGVLLS-------ILTKDFESFERYMNQLKPYYFDYNEKLSESEKKHKLLGLNLLYLLSQNRIAEFHTEL  123 (260)
T ss_pred             HHHHHHHHHHH-------HHhccHHHHHHHHHHhcchhcccccccCcchhhhHHHHHHHHHHHHhccHHHHHHHH
Confidence            44444455543       57889999999999999987632                 22678889999988765


No 5  
>PF09443 CFC:  Cripto_Frl-1_Cryptic (CFC);  InterPro: IPR019011 This entry represents the CFC domain found in the membrane protein Cripto (or teratocarcinoma-derived growth factor), a protein over expressed in many tumours [, ] and structurally similar to the C-terminal extracellular portions of Jagged 1 and Jagged 2 []. CFC is approx 40-residues long, compacted by three internal disulphide bridges, and binds Alk4 via a hydrophobic patch. CFC is structurally homologous to the VWFC-like domain [].  The protein Cripto is the founding member of the extra-cellular EGF-CFC growth factors, which are composed of two adjacent cysteine-rich domains: the EGF-like (IPR006210 from INTERPRO) and the CFC domains. Members of the EGF-CFC family play key roles in embryonic development and are also implicated in tumourigenesis []. The Cripto protein could play a role in the determination of the epiblastic cells that subsequently give rise to the mesoderm. Although both the EGF and CFC domains are involved in the tumourigenic activity of Crispto proteins, the CFC domain appears to play a crucial role, as it is through the CFC domain that Crispto interferes with the onco-suppressive activity of Activins, either by blocking the Activin receptor ALK4 or by antagonising proteins of the TGF-beta family [].  The Cryptic protein is involved in the correct establishment of the left-right axis. May play a role in mesoderm and/or neural patterning during gastrulation.; PDB: 2J5H_A.
Probab=44.22  E-value=8.6  Score=23.64  Aligned_cols=24  Identities=33%  Similarity=0.710  Sum_probs=8.7

Q ss_pred             HHHhhhceeccc------cccchhhhccch
Q 033759           59 GAFAHGFYLVYP------LFYSIDCFAGQF   82 (112)
Q Consensus        59 gAFaHG~YLlt~------~Y~~~d~~~~~~   82 (112)
                      ||+.||..+.-+      .|+.+-||..||
T Consensus         2 G~v~Hg~W~~~~C~lCrC~~G~LhC~p~~~   31 (36)
T PF09443_consen    2 GAVPHGEWVPKGCSLCRCWYGTLHCFPQQF   31 (36)
T ss_dssp             -----TT-SS---------SSS--S--SSS
T ss_pred             CCccCCCeeecCceeeEeecCcEEEcCccc
Confidence            689999998766      688888887764


No 6  
>COG5477 Predicted small integral membrane protein [Function unknown]
Probab=36.70  E-value=18  Score=26.46  Aligned_cols=19  Identities=42%  Similarity=0.714  Sum_probs=16.6

Q ss_pred             hHHHHHHHHHHHHhhhcee
Q 033759           49 RDRLFTAVLAGAFAHGFYL   67 (112)
Q Consensus        49 RdrLF~~vLagAFaHG~YL   67 (112)
                      -||||-..|+.||.|=..+
T Consensus        54 GDRLFisLLgsAyIhLAWl   72 (97)
T COG5477          54 GDRLFISLLGSAYIHLAWL   72 (97)
T ss_pred             cceehHHHHHHHHHHHHHH
Confidence            5999999999999996654


No 7  
>PF10801 DUF2537:  Protein of unknown function (DUF2537);  InterPro: IPR024244 This bacterial family of proteins has no known function.
Probab=36.41  E-value=31  Score=24.55  Aligned_cols=21  Identities=24%  Similarity=0.082  Sum_probs=16.7

Q ss_pred             ccCCCchhhHHHHHHHHHHHH
Q 033759           41 GLRKNPVVRDRLFTAVLAGAF   61 (112)
Q Consensus        41 glrk~PvLRdrLF~~vLagAF   61 (112)
                      ..|+.|++||-.+|+.++-+.
T Consensus        53 ~~R~~PV~RW~v~G~~~Gv~~   73 (84)
T PF10801_consen   53 LWRRRPVWRWFVLGAAAGVLA   73 (84)
T ss_pred             HhhcchHHHHHHHHHHHHHHH
Confidence            468899999999998776543


No 8  
>PF04991 LicD:  LicD family;  InterPro: IPR007074 The LicD family of proteins show high sequence similarity and are involved in phosphorylcholine metabolism. There is evidence to show that LicD2 mutants have a reduced ability to take up choline, have decreased ability to adhere to host cells and are less virulent []. Fukutin, which is a member of the LicD family, is a human protein which may be involved in the modification of glycan moieties of alpha-dystroglycan; defects in Fukutin are associated with congential muscular dystrophy [].
Probab=30.36  E-value=12  Score=26.47  Aligned_cols=20  Identities=30%  Similarity=0.449  Sum_probs=16.4

Q ss_pred             hhHHHHHHHHHHHHhhhcee
Q 033759           48 VRDRLFTAVLAGAFAHGFYL   67 (112)
Q Consensus        48 LRdrLF~~vLagAFaHG~YL   67 (112)
                      ++.-|.+|||-||.=||+.+
T Consensus         6 I~y~L~~GTLLGAvRh~gfI   25 (205)
T PF04991_consen    6 IKYWLDGGTLLGAVRHGGFI   25 (205)
T ss_pred             CeEEEECccHHHHHhcCCCC
Confidence            34557899999999999975


No 9  
>PF11868 DUF3388:  Protein of unknown function (DUF3388);  InterPro: IPR024514 This domain is found in a family of bacterial proteins that are functionally uncharacterised. Proteins in this family are typically between 261 to 275 amino acids in length and have a N-terminal ACT domain.
Probab=29.94  E-value=28  Score=28.19  Aligned_cols=22  Identities=41%  Similarity=0.609  Sum_probs=18.0

Q ss_pred             CCchhhHHHHHHHHHHHHhhhceeccccc
Q 033759           44 KNPVVRDRLFTAVLAGAFAHGFYLVYPLF   72 (112)
Q Consensus        44 k~PvLRdrLF~~vLagAFaHG~YLlt~~Y   72 (112)
                      +.|.|||||       |.-||-|+=-+.=
T Consensus         5 R~P~L~Drl-------AvRHGryi~rd~~   26 (192)
T PF11868_consen    5 REPKLRDRL-------AVRHGRYIDRDAD   26 (192)
T ss_pred             cCCchHHHH-------HhhcccccccccC
Confidence            369999998       8899999876543


No 10 
>smart00794 AgrD Staphylococcal AgrD protein. This family consists of several AgrD proteins from many Staphylococcus species. The agr locus was initially described in Staphylococcus aureus as an element controlling the production of exoproteins implicated in virulence. Its pattern of action has been shown to be complex, upregulating certain extracellular toxins and enzymes expressed post-exponentially and repressing some exponential-phase surface components. AgrD encodes the precursor of the autoinducing peptide (AIP).The AIP derived from AgrD by the action of AgrB interacts with AgrC in the membrane to activate AgrA, which upregulates transcription both from promoter P2, amplifying the response, and from P3, initiating the production of a novel effector: RNAIII. In S. aureus, delta-hemolysin is the only translation product of RNA III and is not involved in the regulatory functions of the transcript, which is therefore the primary agent for modulating the expression of other operons con
Probab=29.52  E-value=9.5  Score=24.44  Aligned_cols=22  Identities=32%  Similarity=0.437  Sum_probs=18.5

Q ss_pred             eccccccchhhhccchhhHHHH
Q 033759           67 LVYPLFYSIDCFAGQFNCWFFY   88 (112)
Q Consensus        67 Llt~~Y~~~d~~~~~~~~~~~~   88 (112)
                      +.++.+..|-.+||+-.||.|+
T Consensus        10 ~~t~~f~~IG~~a~~~~C~~~f   31 (45)
T smart00794       10 LFTKFFESIGNVAGYNPCTGYF   31 (45)
T ss_pred             HHHHHHHHHHHHhcCCcccccC
Confidence            4577888899999999999875


No 11 
>COG4059 MtrE Tetrahydromethanopterin S-methyltransferase, subunit E [Coenzyme metabolism]
Probab=25.77  E-value=30  Score=29.49  Aligned_cols=31  Identities=19%  Similarity=0.147  Sum_probs=24.5

Q ss_pred             HHHHHHHHhhhceeccccccchhhhccchhhH
Q 033759           54 TAVLAGAFAHGFYLVYPLFYSIDCFAGQFNCW   85 (112)
Q Consensus        54 ~~vLagAFaHG~YLlt~~Y~~~d~~~~~~~~~   85 (112)
                      -+...+|+.||+|.+|.--+.+.+ +.+|+-=
T Consensus        92 lGa~iaA~vH~~~Avts~mGR~~s-~s~F~qP  122 (304)
T COG4059          92 LGAGIAACVHGTFAVTSHMGRIAS-QSRFGQP  122 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh-HhhcCCc
Confidence            355667999999999999998888 6666643


No 12 
>TIGR00766 ribonuclease, putative. This family shows similarity to ribonuclease BN
Probab=24.87  E-value=1.3e+02  Score=22.89  Aligned_cols=60  Identities=13%  Similarity=0.141  Sum_probs=38.3

Q ss_pred             eeeccCCCchhhHHHHHHHHHHHH------hhhceec----cccccchhhhccchhhHHHHHHHHHHHhch
Q 033759           38 IRIGLRKNPVVRDRLFTAVLAGAF------AHGFYLV----YPLFYSIDCFAGQFNCWFFYMVDYLLIGNY   98 (112)
Q Consensus        38 IRIglrk~PvLRdrLF~~vLagAF------aHG~YLl----t~~Y~~~d~~~~~~~~~~~~~~~~~~~~~~   98 (112)
                      -+.--++++++|+.+-|++++++.      +=+.|+-    +..|+.+..+.+ +--|+++..--+++|--
T Consensus       186 y~~lP~~k~~~~~~l~Ga~~aa~~~~~~~~~fs~Y~~~~~~~~~y~~~gsvi~-lllWly~~~~ill~ga~  255 (263)
T TIGR00766       186 FTWMPREPVRLVTLARGTLMAAIGFELFKQVMTIYLPILLRSPSGAAFGSVLG-LMVFFYFFAWLILFATA  255 (263)
T ss_pred             HHHCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHhHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            343345567899999999998763      1122321    445566666665 56788887777777643


No 13 
>PF04206 MtrE:  Tetrahydromethanopterin S-methyltransferase, subunit E ;  InterPro: IPR005780  This model describes N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit E in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump.  5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate.  Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0006814 sodium ion transport, 0005737 cytoplasm, 0012506 vesicle membrane
Probab=23.36  E-value=66  Score=27.22  Aligned_cols=63  Identities=22%  Similarity=0.364  Sum_probs=40.7

Q ss_pred             ceehhhhhhhccccee-eeccCCCchhhHHHHHHHHHHHHhhhceeccccccchhhhccchhhHHHHHH
Q 033759           23 YKFLVPLIYAPVLPLI-RIGLRKNPVVRDRLFTAVLAGAFAHGFYLVYPLFYSIDCFAGQFNCWFFYMV   90 (112)
Q Consensus        23 ~kfLvPLiyAPvLpLI-RIglrk~PvLRdrLF~~vLagAFaHG~YLlt~~Y~~~d~~~~~~~~~~~~~~   90 (112)
                      |-++.-+..+=..-|+ .+++  ||++-  +-.+...+||.||.|-.|--.+.+.+ ..+||-+.|.=|
T Consensus        58 ygl~~ai~g~iA~~lm~~~~~--~~i~a--i~~Ga~vAa~v~g~ya~taylGR~~s-~~~F~QPvylDv  121 (269)
T PF04206_consen   58 YGLWCAIAGAIAWALMSAFGL--NPILA--IAIGAAVAALVHGVYATTAYLGRIAS-QKRFGQPVYLDV  121 (269)
T ss_pred             hhHHHHHHHHHHHHHHHHcCc--cHHHH--HHHHHHHHHHHHHHHHHHHHhhhHhh-HhhcCCCeehHH
Confidence            3333333333333344 3443  36553  44456678999999999999999988 778998887533


No 14 
>KOG2292 consensus Oligosaccharyltransferase, STT3 subunit [Posttranslational modification, protein turnover, chaperones]
Probab=22.09  E-value=22  Score=33.44  Aligned_cols=39  Identities=49%  Similarity=0.890  Sum_probs=25.9

Q ss_pred             ccccccc--hhhhccchh-------------hH-------HHHHHH----HHHHhchhhhHHHHHH
Q 033759           68 VYPLFYS--IDCFAGQFN-------------CW-------FFYMVD----YLLIGNYIAPLHVLLM  107 (112)
Q Consensus        68 lt~~Y~~--~d~~~~~~~-------------~~-------~~~~~~----~~~~~~~~~~~~~~~~  107 (112)
                      +.-+|||  |+-|+=||.             +|       +||||.    |..|-|.| ||||++.
T Consensus       165 VAGSYDNE~IAIfal~~T~ylwiKavkTGSifwa~~~aL~YFYMVsaWGGYvFiiNLI-PLHVlvl  229 (751)
T KOG2292|consen  165 VAGSYDNEGIAIFALLFTYYLWIKAVKTGSIFWAACCALAYFYMVSAWGGYVFIINLI-PLHVLVL  229 (751)
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhheeeccceEEEEech-HHHHHHH
Confidence            4456776  566766653             23       689985    56666654 9999864


No 15 
>PF05931 AgrD:  Staphylococcal AgrD protein;  InterPro: IPR009229 This family consists of several AgrD proteins from many Staphylococcus species. The agr locus was initially described in Staphylococcus aureus as an element controlling the production of exoproteins implicated in virulence. Its pattern of action has been shown to be complex, upregulating certain extracellular toxins and enzymes expressed post-exponentially and repressing some exponential-phase surface components. AgrD encodes the precursor of the autoinducing peptide (AIP).The AIP derived from AgrD by the action of AgrB interacts with AgrC in the membrane to activate AgrA, which upregulates transcription both from promoter P2, amplifying the response, and from P3, initiating the production of a novel effector: RNAIII. In S. aureus, delta-hemolysin is the only translation product of RNA III and is not involved in the regulatory functions of the transcript, which is therefore the primary agent for modulating the expression of other operons controlled by agr [].
Probab=20.72  E-value=16  Score=23.19  Aligned_cols=22  Identities=23%  Similarity=0.347  Sum_probs=18.2

Q ss_pred             eccccccchhhhccchhhHHHH
Q 033759           67 LVYPLFYSIDCFAGQFNCWFFY   88 (112)
Q Consensus        67 Llt~~Y~~~d~~~~~~~~~~~~   88 (112)
                      ++|+++..+-.++|.-.||.|+
T Consensus        10 ~~t~~f~~IG~~a~~~~C~~~~   31 (45)
T PF05931_consen   10 FFTKIFEFIGNVAGYNPCSGYF   31 (45)
T ss_pred             HHHHHHHHHHhhhccCccceec
Confidence            3577888888999999999875


No 16 
>COG3008 PqiB Paraquat-inducible protein B [General function prediction only]
Probab=20.12  E-value=26  Score=31.99  Aligned_cols=32  Identities=25%  Similarity=0.526  Sum_probs=20.7

Q ss_pred             CCCCCCcchHHHHHhhccCCCCceehhhhhhhccccee
Q 033759            1 MASSSNSSQQEAVMRKQNNGPPYKFLVPLIYAPVLPLI   38 (112)
Q Consensus         1 masss~ps~~e~v~rr~~r~~p~kfLvPLiyAPvLpLI   38 (112)
                      |++-+.++..++.+|++||      .-|+|..|++.|+
T Consensus         1 ~~~~~~~~~~~a~ir~~r~------~SpiWllPivAl~   32 (553)
T COG3008           1 MSQETPPSNGPAQIRKKRR------ISPIWLLPIVALL   32 (553)
T ss_pred             CCCCCCCCCCCccceeecC------CCchHHHHHHHHH
Confidence            4555666666666666666      6677777776553


Done!