Query 033759
Match_columns 112
No_of_seqs 17 out of 19
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 09:40:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033759.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033759hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tzs_P Activation peptide from 42.1 10 0.00034 19.2 1.1 18 37-54 3-20 (35)
2 1htr_P Progastricsin (Pro segm 39.0 10 0.00035 20.2 0.8 18 37-54 2-19 (43)
3 3vcm_P Prorenin; aspartic prot 32.5 14 0.00049 20.9 0.8 19 36-54 7-25 (43)
4 4f4s_A ATP synthase subunit 9, 19.8 62 0.0021 21.5 2.2 23 41-63 36-59 (76)
5 3ndq_A Transcription elongatio 17.2 23 0.00079 24.0 -0.4 17 41-57 73-91 (108)
6 2eqo_A TNF receptor-associated 17.1 30 0.001 25.4 0.1 12 19-30 35-46 (140)
7 3zvk_A VAPC2, toxin of toxin-a 15.8 78 0.0027 19.7 1.9 32 46-80 95-126 (134)
8 2dt6_A Splicing factor 3 subun 15.1 62 0.0021 19.7 1.2 19 10-28 22-40 (64)
9 3mxn_B RECQ-mediated genome in 13.7 54 0.0019 24.4 0.8 18 10-27 13-30 (150)
10 3psg_A Pepsinogen; hydrolase(a 12.5 62 0.0021 24.6 0.8 18 37-54 1-18 (370)
No 1
>1tzs_P Activation peptide from cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=42.10 E-value=10 Score=19.22 Aligned_cols=18 Identities=33% Similarity=0.672 Sum_probs=15.4
Q ss_pred eeeeccCCCchhhHHHHH
Q 033759 37 LIRIGLRKNPVVRDRLFT 54 (112)
Q Consensus 37 LIRIglrk~PvLRdrLF~ 54 (112)
++||.++|.+.+|.++--
T Consensus 3 l~rIpL~K~~s~r~~l~~ 20 (35)
T 1tzs_P 3 LHRVPLRRHPSLKKKLRA 20 (35)
T ss_pred EEEEEeEEchHHHHHHHH
Confidence 679999999999998754
No 2
>1htr_P Progastricsin (Pro segment); aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_P
Probab=39.02 E-value=10 Score=20.16 Aligned_cols=18 Identities=17% Similarity=0.445 Sum_probs=15.6
Q ss_pred eeeeccCCCchhhHHHHH
Q 033759 37 LIRIGLRKNPVVRDRLFT 54 (112)
Q Consensus 37 LIRIglrk~PvLRdrLF~ 54 (112)
++||.++|.+.+|.++--
T Consensus 2 l~RIpL~K~~s~R~~l~~ 19 (43)
T 1htr_P 2 VVKVPLKKFKSIRETMKE 19 (43)
T ss_dssp CEEEEEEECCCHHHHHHH
T ss_pred eEEEeeeEcchHHHHHHH
Confidence 689999999999998754
No 3
>3vcm_P Prorenin; aspartic proteases, hydrolase; HET: NAG; 2.93A {Homo sapiens}
Probab=32.46 E-value=14 Score=20.93 Aligned_cols=19 Identities=32% Similarity=0.495 Sum_probs=16.4
Q ss_pred ceeeeccCCCchhhHHHHH
Q 033759 36 PLIRIGLRKNPVVRDRLFT 54 (112)
Q Consensus 36 pLIRIglrk~PvLRdrLF~ 54 (112)
.++||.++|.+.+|.++-.
T Consensus 7 ~l~RIPL~k~kS~R~~l~e 25 (43)
T 3vcm_P 7 TFKRIFLKRMPSIRESLKE 25 (43)
T ss_dssp CCEEEEEEECCCHHHHHHH
T ss_pred ceeEEeeeecccHHHHHHH
Confidence 5789999999999998754
No 4
>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*
Probab=19.83 E-value=62 Score=21.47 Aligned_cols=23 Identities=35% Similarity=0.742 Sum_probs=16.5
Q ss_pred ccCCCchhhHHHHH-HHHHHHHhh
Q 033759 41 GLRKNPVVRDRLFT-AVLAGAFAH 63 (112)
Q Consensus 41 glrk~PvLRdrLF~-~vLagAFaH 63 (112)
|.-+||.+++.+|+ ..|+-|++-
T Consensus 36 ~~aRnP~~~~~l~~~~ilG~Al~E 59 (76)
T 4f4s_A 36 GVSRNPSIKDTVFPMAILGFALSE 59 (76)
T ss_dssp HHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred HHhcChhHHHhHHHHHHHHHHHHH
Confidence 45679999999995 455556543
No 5
>3ndq_A Transcription elongation factor A protein 1; helix bundle; 1.93A {Homo sapiens}
Probab=17.20 E-value=23 Score=23.95 Aligned_cols=17 Identities=29% Similarity=0.612 Sum_probs=13.3
Q ss_pred ccC--CCchhhHHHHHHHH
Q 033759 41 GLR--KNPVVRDRLFTAVL 57 (112)
Q Consensus 41 glr--k~PvLRdrLF~~vL 57 (112)
-+| |||.||.++..+.+
T Consensus 73 NLKd~kNp~Lr~~vl~G~i 91 (108)
T 3ndq_A 73 NLKDAKNPNLRKNVLCGNI 91 (108)
T ss_dssp HHTCTTCHHHHHHHHHTSS
T ss_pred HcCCCCCHHHHHHHHcCCc
Confidence 355 99999999887654
No 6
>2eqo_A TNF receptor-associated factor 3-interacting protein 1; STN_TRAF3IP1_ND domain, interleukin 13 receptor alpha 1-binding protein-1 [HOMO sapiens]; NMR {Homo sapiens}
Probab=17.14 E-value=30 Score=25.40 Aligned_cols=12 Identities=33% Similarity=0.999 Sum_probs=8.1
Q ss_pred CCCCceehhhhh
Q 033759 19 NGPPYKFLVPLI 30 (112)
Q Consensus 19 r~~p~kfLvPLi 30 (112)
++|||+||-=++
T Consensus 35 ~kPPFRFLhDIv 46 (140)
T 2eqo_A 35 SKPPFRYLHDII 46 (140)
T ss_dssp TSCCHHHHHHHH
T ss_pred cCCCHHHHHHHH
Confidence 778888875443
No 7
>3zvk_A VAPC2, toxin of toxin-antitoxin system; antitoxin-toxin-DNA complex, protein-DNA complex; HET: DNA MES; 2.50A {Rickettsia felis}
Probab=15.83 E-value=78 Score=19.69 Aligned_cols=32 Identities=19% Similarity=0.048 Sum_probs=22.3
Q ss_pred chhhHHHHHHHHHHHHhhhceeccccccchhhhcc
Q 033759 46 PVVRDRLFTAVLAGAFAHGFYLVYPLFYSIDCFAG 80 (112)
Q Consensus 46 PvLRdrLF~~vLagAFaHG~YLlt~~Y~~~d~~~~ 80 (112)
....|++ ..|.|..||..++|.--..|+.+.|
T Consensus 95 ~~~~D~l---IaA~A~~~~~~lvT~d~~df~~~~g 126 (134)
T 3zvk_A 95 IGNNDLL---IASHAIAENATLVTNNIKEFKRIPN 126 (134)
T ss_dssp CCHHHHH---HHHHHHHHTCEEEESSTTTSCSCTT
T ss_pred CCccHHH---HHHHHHHCCCEEEECCHHHhcCCCC
Confidence 3456765 5677999999999976555555543
No 8
>2dt6_A Splicing factor 3 subunit 1; structure genomics, SF3A120, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=15.06 E-value=62 Score=19.67 Aligned_cols=19 Identities=26% Similarity=0.653 Sum_probs=15.1
Q ss_pred HHHHHhhccCCCCceehhh
Q 033759 10 QEAVMRKQNNGPPYKFLVP 28 (112)
Q Consensus 10 ~e~v~rr~~r~~p~kfLvP 28 (112)
.+..+.|+++.|.|.||-|
T Consensus 22 E~~l~~~e~~np~F~FL~~ 40 (64)
T 2dt6_A 22 EARIRQNEINNPKFNFLNP 40 (64)
T ss_dssp HHHHHHHSTTCGGGGGGST
T ss_pred HHHHHHhccCCCCcccCCC
Confidence 5566777788899999976
No 9
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=13.75 E-value=54 Score=24.42 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=9.2
Q ss_pred HHHHHhhccCCCCceehh
Q 033759 10 QEAVMRKQNNGPPYKFLV 27 (112)
Q Consensus 10 ~e~v~rr~~r~~p~kfLv 27 (112)
..+...++++.||.|+|.
T Consensus 13 ~~~~~~~~~~~PpvK~l~ 30 (150)
T 3mxn_B 13 GGPAGVRLPRSPPLKVLA 30 (150)
T ss_dssp -------CCSSCCEECCH
T ss_pred CCCcccccCCCCcHHHHH
Confidence 455677888888888875
No 10
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=12.46 E-value=62 Score=24.58 Aligned_cols=18 Identities=22% Similarity=0.519 Sum_probs=15.4
Q ss_pred eeeeccCCCchhhHHHHH
Q 033759 37 LIRIGLRKNPVVRDRLFT 54 (112)
Q Consensus 37 LIRIglrk~PvLRdrLF~ 54 (112)
|+||.|+|.+.+|.+|-.
T Consensus 1 ~~~ipl~~~~s~r~~~~~ 18 (370)
T 3psg_A 1 LVKVPLVRKKSLRQNLIK 18 (370)
T ss_dssp CEEEEEEECCCHHHHHHH
T ss_pred CEEEEeEEcCcHHHHHHh
Confidence 579999999999998854
Done!