BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033761
(112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CCR|A Chain A, Structure Of Rice Ferricytochrome C At 2.0 Angstroms
Resolution
Length = 112
Score = 207 bits (528), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 97/111 (87%), Positives = 104/111 (93%)
Query: 2 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN 61
ASF EAPPGN KAGEKIFKTKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTTPGYSYS A+
Sbjct: 2 ASFSEAPPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTAD 61
Query: 62 KNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 112
KNMAV WEE TLYDYLLNP KYIPGTKMVFPGL KPQ+RADLI+YLK++T+
Sbjct: 62 KNMAVIWEENTLYDYLLNPXKYIPGTKMVFPGLXKPQERADLISYLKEATS 112
>pdb|1J3S|A Chain A, Solution Structure Of Reduced Recombinant Human Cytochrome
C
Length = 104
Score = 150 bits (379), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 68/102 (66%), Positives = 84/102 (82%)
Query: 10 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWE 69
G+ + G+KIF KC+QCHTVEKG HK GPNL+GLFGR++G PGYSY+AANKN + W
Sbjct: 1 GDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIWG 60
Query: 70 EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 111
E TL +YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct: 61 EDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 102
>pdb|2AIU|A Chain A, Crystal Structure Of Mouse Testicular Cytochrome C At 1.6
Angstrom
Length = 105
Score = 150 bits (378), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 69/103 (66%), Positives = 83/103 (80%)
Query: 10 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWE 69
G+A+AG+KIF KCAQCHTVEKG HK GPNL GLFGR++G PG+SY+ ANKN V W
Sbjct: 2 GDAEAGKKIFVQKCAQCHTVEKGGKHKTGPNLWGLFGRKTGQAPGFSYTDANKNKGVIWS 61
Query: 70 EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 112
E+TL +YL NPKKYIPGTKM+F G+KK +R DLI YLKQ+T+
Sbjct: 62 EETLMEYLENPKKYIPGTKMIFAGIKKKSEREDLIKYLKQATS 104
>pdb|3NWV|A Chain A, Human Cytochrome C G41s
pdb|3NWV|B Chain B, Human Cytochrome C G41s
pdb|3NWV|C Chain C, Human Cytochrome C G41s
pdb|3NWV|D Chain D, Human Cytochrome C G41s
Length = 104
Score = 148 bits (373), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 67/102 (65%), Positives = 83/102 (81%)
Query: 10 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWE 69
G+ + G+KIF KC+QCHTVEKG HK GPNL+GLFGR++ PGYSY+AANKN + W
Sbjct: 1 GDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTSQAPGYSYTAANKNKGIIWG 60
Query: 70 EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 111
E TL +YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct: 61 EDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 102
>pdb|1CRC|A Chain A, Cytochrome C At Low Ionic Strength
pdb|1CRC|B Chain B, Cytochrome C At Low Ionic Strength
pdb|1HRC|A Chain A, High-Resolution Three-Dimensional Structure Of Horse Heart
Cytochrome C
pdb|3O1Y|A Chain A, Electron Transfer Complexes: Experimental Mapping Of The
Redox- Dependent Cytochrome C Electrostatic Surface
pdb|3O1Y|B Chain B, Electron Transfer Complexes: Experimental Mapping Of The
Redox- Dependent Cytochrome C Electrostatic Surface
pdb|3O1Y|C Chain C, Electron Transfer Complexes: Experimental Mapping Of The
Redox- Dependent Cytochrome C Electrostatic Surface
pdb|3O20|A Chain A, Electron Transfer Complexes:experimental Mapping Of The
Redox- Dependent Cytochrome C Electrostatic Surface
pdb|3O20|B Chain B, Electron Transfer Complexes:experimental Mapping Of The
Redox- Dependent Cytochrome C Electrostatic Surface
pdb|3O20|C Chain C, Electron Transfer Complexes:experimental Mapping Of The
Redox- Dependent Cytochrome C Electrostatic Surface
pdb|1WEJ|F Chain F, Igg1 Fab Fragment (Of E8 Antibody) Complexed With Horse
Cytochrome C At 1.8 A Resolution
Length = 105
Score = 147 bits (371), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 65/102 (63%), Positives = 83/102 (81%)
Query: 10 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWE 69
G+ + G+KIF KCAQCHTVEKG HK GPNL+GLFGR++G PG++Y+ ANKN + W+
Sbjct: 2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWK 61
Query: 70 EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 111
E+TL +YL NPKKYIPGTKM+F G+KK +R DLIAYLK++T
Sbjct: 62 EETLMEYLENPKKYIPGTKMIFAGIKKKTEREDLIAYLKKAT 103
>pdb|2PCB|B Chain B, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U75|B Chain B, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1AKK|A Chain A, Solution Structure Of Oxidized Horse Heart Cytochrome C,
Nmr, Minimized Average Structure
pdb|1FI7|A Chain A, Solution Structure Of The Imidazole Complex Of Cytochrome
C
pdb|1FI9|A Chain A, Solution Structure Of The Imidazole Complex Of Cytochrome
C
pdb|1I5T|A Chain A, Solution Structure Of Cyanoferricytochrome C
pdb|1LC1|A Chain A, Solution Structure Of Reduced Horse Heart Cytochrome C In
30% Acetonitrile Solution, Nmr Minimized Average
Structure
pdb|1LC2|A Chain A, Solution Structure Of Reduced Horse Heart Cytochrome C In
30% Acetonitrile Solution, Nmr 30 Structures
pdb|1M60|A Chain A, Solution Structure Of Zinc-Substituted Cytochrome C
pdb|1OCD|A Chain A, Cytochrome C (Oxidized) From Equus Caballus, Nmr,
Minimized Average Structure
pdb|2FRC|A Chain A, Cytochrome C (Reduced) From Equus Caballus, Nmr, Minimized
Average Structure
pdb|2GIW|A Chain A, Solution Structure Of Reduced Horse Heart Cytochrome C,
Nmr, 40 Structures
pdb|3NBS|A Chain A, Crystal Structure Of Dimeric Cytochrome C From Horse Heart
pdb|3NBS|B Chain B, Crystal Structure Of Dimeric Cytochrome C From Horse Heart
pdb|3NBS|C Chain C, Crystal Structure Of Dimeric Cytochrome C From Horse Heart
pdb|3NBS|D Chain D, Crystal Structure Of Dimeric Cytochrome C From Horse Heart
pdb|3NBT|A Chain A, Crystal Structure Of Trimeric Cytochrome C From Horse
Heart
pdb|3NBT|B Chain B, Crystal Structure Of Trimeric Cytochrome C From Horse
Heart
pdb|3NBT|C Chain C, Crystal Structure Of Trimeric Cytochrome C From Horse
Heart
pdb|3NBT|D Chain D, Crystal Structure Of Trimeric Cytochrome C From Horse
Heart
pdb|3NBT|E Chain E, Crystal Structure Of Trimeric Cytochrome C From Horse
Heart
pdb|3NBT|F Chain F, Crystal Structure Of Trimeric Cytochrome C From Horse
Heart
Length = 104
Score = 147 bits (371), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 65/102 (63%), Positives = 83/102 (81%)
Query: 10 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWE 69
G+ + G+KIF KCAQCHTVEKG HK GPNL+GLFGR++G PG++Y+ ANKN + W+
Sbjct: 1 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWK 60
Query: 70 EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 111
E+TL +YL NPKKYIPGTKM+F G+KK +R DLIAYLK++T
Sbjct: 61 EETLMEYLENPKKYIPGTKMIFAGIKKKTEREDLIAYLKKAT 102
>pdb|2B4Z|A Chain A, Crystal Structure Of Cytochrome C From Bovine Heart At 1.5
A Resolution.
pdb|2YBB|Y Chain Y, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 104
Score = 146 bits (369), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 66/102 (64%), Positives = 82/102 (80%)
Query: 10 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWE 69
G+ + G+KIF KCAQCHTVEKG HK GPNL+GLFGR++G PG+SY+ ANKN + W
Sbjct: 1 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWG 60
Query: 70 EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 111
E+TL +YL NPKKYIPGTKM+F G+KK +R DLIAYLK++T
Sbjct: 61 EETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKAT 102
>pdb|1GIW|A Chain A, Solution Structure Of Reduced Horse Heart Cytochrome C,
Nmr, Minimized Average Structure
Length = 104
Score = 145 bits (366), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 64/101 (63%), Positives = 82/101 (81%)
Query: 11 NAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEE 70
+ + G+KIF KCAQCHTVEKG HK GPNL+GLFGR++G PG++Y+ ANKN + W+E
Sbjct: 2 DVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWKE 61
Query: 71 KTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 111
+TL +YL NPKKYIPGTKM+F G+KK +R DLIAYLK++T
Sbjct: 62 ETLMEYLENPKKYIPGTKMIFAGIKKKTEREDLIAYLKKAT 102
>pdb|1NMI|A Chain A, Solution Structure Of The Imidazole Complex Of Iso-1
Cytochrome C
pdb|2HV4|A Chain A, Nmr Solution Structure Refinement Of Yeast Iso-1-
Ferrocytochrome C
pdb|2ORL|A Chain A, Solution Structure Of The Cytochrome C- Para-Aminophenol
Adduct
pdb|3TYI|A Chain A, Crystal Structure Of Cytochrome C -
P-Sulfonatocalix[4]arene Complexes
pdb|3TYI|B Chain B, Crystal Structure Of Cytochrome C -
P-Sulfonatocalix[4]arene Complexes
Length = 108
Score = 137 bits (345), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/106 (61%), Positives = 77/106 (72%)
Query: 6 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMA 65
E G+AK G +FKT+C QCHTVEKG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 111
V W+E + +YL NPKKYIPGTKM F GLKK +DR DLI YLK++T
Sbjct: 62 VLWDENNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLITYLKKAT 107
>pdb|1S6V|B Chain B, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|D Chain D, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 108
Score = 137 bits (344), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/106 (61%), Positives = 77/106 (72%)
Query: 6 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMA 65
E G+AK G +FKT+C QCHTVEKG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 111
V W+E + +YL NPKKYIPGTKM F GLKK +DR DLI YLK++T
Sbjct: 62 VLWDENNMSEYLTNPKKYIPGTKMCFGGLKKEKDRNDLITYLKKAT 107
>pdb|2JQR|A Chain A, Solution Model Of Crosslinked Complex Of Cytochrome C And
Adrenodoxin
Length = 108
Score = 136 bits (343), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/106 (61%), Positives = 77/106 (72%)
Query: 6 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMA 65
E G+AK G +FKT+C QCHTVEKG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKCGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 111
V W+E + +YL NPKKYIPGTKM F GLKK +DR DLI YLK++T
Sbjct: 62 VLWDENNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLITYLKKAT 107
>pdb|1U74|B Chain B, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|D Chain D, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|2BCN|B Chain B, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
Length = 108
Score = 136 bits (342), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 64/106 (60%), Positives = 77/106 (72%)
Query: 6 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMA 65
E G+AK G +FKT+C QCHTVEKG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 111
V W+E + +YL NPKKYIPGTKM F GLKK +DR DLI YLK+++
Sbjct: 62 VLWDENNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLITYLKKAS 107
>pdb|2YCC|A Chain A, Oxidation State-Dependent Conformational Changes In
Cytochrome C
Length = 108
Score = 135 bits (340), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 64/106 (60%), Positives = 76/106 (71%)
Query: 6 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMA 65
E G+AK G +FKT+C QCHTVEKG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 111
V W+E + +YL NP KYIPGTKM F GLKK +DR DLI YLK++T
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKAT 107
>pdb|2PCC|B Chain B, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|D Chain D, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2GB8|B Chain B, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
Length = 108
Score = 135 bits (340), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 76/105 (72%)
Query: 6 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMA 65
E G+AK G +FKT+C QCHTVEKG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQS 110
V W+E + +YL NPKKYIPGTKM F GLKK +DR DLI YLK++
Sbjct: 62 VLWDENNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLITYLKKA 106
>pdb|1CYC|A Chain A, The Crystal Structure Of Bonito (Katsuo) Ferrocytochrome C
At 2.3 Angstroms Resolution. Ii. Structure And Function
pdb|1CYC|B Chain B, The Crystal Structure Of Bonito (Katsuo) Ferrocytochrome C
At 2.3 Angstroms Resolution. Ii. Structure And Function
Length = 103
Score = 134 bits (338), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 62/103 (60%), Positives = 76/103 (73%)
Query: 10 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWE 69
G+ G+K F KCAQCHTVE G HK GPNL GLFGR++G GYSY+ ANK+ + W
Sbjct: 1 GDVAKGKKTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWN 60
Query: 70 EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 112
E TL +YL NPKKYIPGTKM+F G+KK +R DL+AYLK +T+
Sbjct: 61 ENTLMEYLENPKKYIPGTKMIFAGIKKKGERQDLVAYLKSATS 103
>pdb|1CSW|A Chain A, Replacements In A Conserved Leucine Cluster In The
Hydrophobic Heme Pocket Of Cytochrome C
Length = 108
Score = 134 bits (338), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 76/106 (71%)
Query: 6 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMA 65
E G+AK G +FKT+C QCHTVEKG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 111
V W+E + +YL NP KYIPGTKM F G+KK +DR DLI YLK++T
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMAFGGMKKEKDRNDLITYLKKAT 107
>pdb|1CTY|A Chain A, Mutation Of Tyrosine-67 In Cytochrome C Significantly
Alters The Local Heme Environment
pdb|1CTZ|A Chain A, Mutation Of Tyrosine-67 In Cytochrome C Significantly
Alters The Local Heme Environment
Length = 108
Score = 134 bits (337), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 76/106 (71%)
Query: 6 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMA 65
E G+AK G +FKT+C QCHTVEKG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 111
V W+E + ++L NP KYIPGTKM F GLKK +DR DLI YLK++T
Sbjct: 62 VLWDENNMSEFLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKAT 107
>pdb|1YIC|A Chain A, The Oxidized Saccharomyces Cerevisiae Iso-1-Cytochrome C,
Nmr, 20 Structures
Length = 108
Score = 134 bits (337), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 76/106 (71%)
Query: 6 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMA 65
E G+AK G +FKT+C QCHTVEKG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 111
V W+E + +YL NP KYIPGTKM F GLKK +DR DLI YLK+++
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKAS 107
>pdb|1IRV|A Chain A, Cytochrome C Isozyme 1, Reduced, Mutant With Ile 75
Replaced By Met And Cys 102 Replaced By Thr
Length = 108
Score = 134 bits (337), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 76/106 (71%)
Query: 6 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMA 65
E G+AK G +FKT+C QCHTVEKG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 111
V W+E + +YL NP KY+PGTKM F GLKK +DR DLI YLK++T
Sbjct: 62 VLWDENNMSEYLTNPXKYMPGTKMAFGGLKKEKDRNDLITYLKKAT 107
>pdb|1YFC|A Chain A, Solution Nmr Structure Of A Yeast Iso-1-Ferrocytochrome C
Length = 108
Score = 134 bits (336), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 76/106 (71%)
Query: 6 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMA 65
E G+AK G +FKT+C QCHTVEKG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 111
V W+E + +YL NP KYIPGTKM F GLKK +DR DLI YLK+++
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKAS 107
>pdb|1CSV|A Chain A, Replacements In A Conserved Leucine Cluster In The
Hydrophobic Heme Pocket Of Cytochrome C
Length = 108
Score = 134 bits (336), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 75/106 (70%)
Query: 6 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMA 65
E G+AK G +FKT+C QCHTVEKG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 111
V W+E + +YL NP KYIPGTKM F G KK +DR DLI YLK++T
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMAFGGFKKEKDRNDLITYLKKAT 107
>pdb|1CHH|A Chain A, Structural Studies Of The Roles Of Residues 82 And 85 At
The Interactive Face Of Cytochrome C
Length = 108
Score = 134 bits (336), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 76/106 (71%)
Query: 6 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMA 65
E G+AK G +FKT+C QCHTVEKG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 111
V W+E + +YL NP KYIPGTKM + GLKK +DR DLI YLK++T
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMAYGGLKKEKDRNDLITYLKKAT 107
>pdb|2B12|B Chain B, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
Length = 108
Score = 134 bits (336), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/105 (60%), Positives = 76/105 (72%)
Query: 6 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMA 65
E G+AK G +FKT+C QCHTVEKG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQS 110
V W+E + +YL NPKKYIPGTKM + GLKK +DR DLI YLK++
Sbjct: 62 VLWDENNMSEYLTNPKKYIPGTKMAYGGLKKEKDRNDLITYLKKA 106
>pdb|2JTI|B Chain B, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 108
Score = 133 bits (335), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/105 (60%), Positives = 75/105 (71%)
Query: 6 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMA 65
E G+AK G +FK +C QCHTVEKG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKARCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQS 110
V W+E + +YL NPKKYIPGTKM F GLKK +DR DLI YLK++
Sbjct: 62 VLWDENNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLITYLKKA 106
>pdb|1KYO|W Chain W, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|3CX5|W Chain W, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|1YCC|A Chain A, High-Resolution Refinement Of Yeast Iso-1-Cytochrome C And
Comparisons With Other Eukaryotic Cytochromes C
Length = 108
Score = 133 bits (334), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 63/105 (60%), Positives = 75/105 (71%)
Query: 6 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMA 65
E G+AK G +FKT+C QCHTVEKG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQS 110
V W+E + +YL NP KYIPGTKM F GLKK +DR DLI YLK++
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKA 106
>pdb|1LMS|A Chain A, Structural Model For An Alkaline Form Of Ferricytochrome C
Length = 108
Score = 133 bits (334), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 75/106 (70%)
Query: 6 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMA 65
E G+AK G +FKT+C QCHTVEKG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 111
V W+E + +YL NP KYIPGT M F GLKK +DR DLI YLK++T
Sbjct: 62 VLWDENNMSEYLTNPAKYIPGTAMAFGGLKKEKDRNDLITYLKKAT 107
>pdb|1FHB|A Chain A, Three-Dimensional Solution Structure Of The Cyanide Adduct
Of A Met80ala Variant Of Saccharomyces Cerevisiae Iso-1-
Cytochrome C. Identification Of Ligand-Residue
Interactions In The Distal Heme Cavity
Length = 108
Score = 133 bits (334), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 76/106 (71%)
Query: 6 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMA 65
E G+AK G +FKT+C QCHTVEKG HK GPNL+G+FGRQSG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRQSGQAEGYSYTDANIKKN 61
Query: 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 111
V W+E + +YL NP KYIPGTK F GLKK +DR DLI YLK+++
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKAAFGGLKKEKDRNDLITYLKKAS 107
>pdb|1CSU|A Chain A, Replacements In A Conserved Leucine Cluster In The
Hydrophobic Heme Pocket Of Cytochrome C
Length = 108
Score = 133 bits (334), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 75/106 (70%)
Query: 6 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMA 65
E G+AK G +FKT+C QCHTVEKG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 111
V W+E + +YL NP KYIPGTKM F G KK +DR DLI YLK++T
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMAFGGCKKEKDRNDLITYLKKAT 107
>pdb|1YEB|A Chain A, Structure Determination And Analysis Of Yeast Iso-2-
Cytochrome C And A Composite Mutant Protein
Length = 108
Score = 133 bits (334), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 77/105 (73%)
Query: 6 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMA 65
E G+AK G +FKT+C QCHT+E+G +K GPNL+G+FGR SG GYSY+ AN N
Sbjct: 2 EFKAGSAKKGATLFKTRCQQCHTIEEGGPNKVGPNLHGIFGRHSGQVKGYSYTDANINKN 61
Query: 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQS 110
V W+E ++ +YL NP KYIPGTKM F GLKK +DR DLI YLK++
Sbjct: 62 VKWDEDSMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKA 106
>pdb|3CXH|W Chain W, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|1YEA|A Chain A, Structure Determination And Analysis Of Yeast Iso-2-
Cytochrome C And A Composite Mutant Protein
Length = 112
Score = 133 bits (334), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 59/102 (57%), Positives = 76/102 (74%)
Query: 9 PGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNW 68
PG+AK G +FKT+C QCHT+E+G +K GPNL+G+FGR SG GYSY+ AN N V W
Sbjct: 9 PGSAKKGATLFKTRCQQCHTIEEGGPNKVGPNLHGIFGRHSGQVKGYSYTDANINKNVKW 68
Query: 69 EEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQS 110
+E ++ +YL NP KYIPGTKM F GLKK +DR DLI Y+ ++
Sbjct: 69 DEDSMSEYLTNPXKYIPGTKMAFAGLKKEKDRNDLITYMTKA 110
>pdb|1CHJ|A Chain A, Structural Studies Of The Roles Of Residues 82 And 85 At
The Interactive Face Of Cytochrome C
Length = 108
Score = 133 bits (334), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 75/106 (70%)
Query: 6 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMA 65
E G+AK G +FKT+C QCHTVEKG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 111
V W+E + +YL NP KYIPGTKM F G KK +DR DLI YLK++T
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMAFGGAKKEKDRNDLITYLKKAT 107
>pdb|2B0Z|B Chain B, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
Length = 108
Score = 133 bits (334), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 63/105 (60%), Positives = 75/105 (71%)
Query: 6 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMA 65
E G+AK G +FKT+C QCHTVEKG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQS 110
V W+E + +YL NPKKYIPGTKM GLKK +DR DLI YLK++
Sbjct: 62 VLWDENNMSEYLTNPKKYIPGTKMAIGGLKKEKDRNDLITYLKKA 106
>pdb|2B11|B Chain B, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|D Chain D, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
Length = 108
Score = 133 bits (334), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 63/105 (60%), Positives = 76/105 (72%)
Query: 6 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMA 65
E G+AK G +FKT+C QCHTVEKG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQS 110
V W+E + +YL NPKKYIPGTKM + GLKK +DR DLI YLK++
Sbjct: 62 VLWDENNMSEYLTNPKKYIPGTKMAWGGLKKEKDRNDLITYLKKA 106
>pdb|1CSX|A Chain A, Replacements In A Conserved Leucine Cluster In The
Hydrophobic Heme Pocket Of Cytochrome C
Length = 108
Score = 132 bits (333), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 75/106 (70%)
Query: 6 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMA 65
E G+AK G +FKT+C QCHTVEKG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 111
V W+E + +YL NP KYIPGTKM F GLKK +DR D I YLK++T
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDSITYLKKAT 107
>pdb|3CYT|O Chain O, Redox Conformation Changes In Refined Tuna Cytochrome C
pdb|3CYT|I Chain I, Redox Conformation Changes In Refined Tuna Cytochrome C
pdb|5CYT|R Chain R, Refinement Of Myoglobin And Cytochrome C
Length = 104
Score = 132 bits (333), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 61/103 (59%), Positives = 75/103 (72%)
Query: 10 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWE 69
G+ G+K F KCAQCHTVE G HK GPNL GLFGR++G GYSY+ ANK+ + W
Sbjct: 2 GDVAKGKKTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWN 61
Query: 70 EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 112
TL +YL NPKKYIPGTKM+F G+KK +R DL+AYLK +T+
Sbjct: 62 NDTLMEYLENPKKYIPGTKMIFAGIKKKGERQDLVAYLKSATS 104
>pdb|1I54|A Chain A, Cytochrome C (Tuna) 2fe:1zn Mixed-Metal Porphyrins
pdb|1I54|B Chain B, Cytochrome C (Tuna) 2fe:1zn Mixed-Metal Porphyrins
pdb|1I55|A Chain A, Cytochrome C (Tuna) With 2zn:1fe Mixed-Metal Porphyrins
pdb|1I55|B Chain B, Cytochrome C (Tuna) With 2zn:1fe Mixed-Metal Porphyrins
pdb|1LFM|A Chain A, Crystal Structure Of Cobalt(Iii)-Substituted Cytochrome C
(Tuna)
pdb|1LFM|B Chain B, Crystal Structure Of Cobalt(Iii)-Substituted Cytochrome C
(Tuna)
Length = 103
Score = 132 bits (333), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 61/103 (59%), Positives = 75/103 (72%)
Query: 10 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWE 69
G+ G+K F KCAQCHTVE G HK GPNL GLFGR++G GYSY+ ANK+ + W
Sbjct: 1 GDVAKGKKTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWN 60
Query: 70 EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 112
TL +YL NPKKYIPGTKM+F G+KK +R DL+AYLK +T+
Sbjct: 61 NDTLMEYLENPKKYIPGTKMIFAGIKKKGERQDLVAYLKSATS 103
>pdb|2LIR|A Chain A, Nmr Solution Structure Of Yeast Iso-1-Cytochrome C Mutant
P71h In Oxidized States
pdb|2LIT|A Chain A, Nmr Solution Structure Of Yeast Iso-1-Cytochrome C Mutant
P71h In Reduced States
Length = 108
Score = 132 bits (333), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 75/106 (70%)
Query: 6 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMA 65
E G+AK G +FKT+C QCHTVEKG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 111
V W+E + +YL N KYIPGTKM F GLKK +DR DLI YLK++T
Sbjct: 62 VLWDENNMSEYLTNHAKYIPGTKMAFGGLKKEKDRNDLITYLKKAT 107
>pdb|1IRW|A Chain A, Cytochrome C Isozyme 1, Reduced, Mutant With Asn 52
Replaced By Ala And Cys 102 Replaced By Thr
Length = 108
Score = 132 bits (332), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 75/106 (70%)
Query: 6 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMA 65
E G+AK G +FKT+C QCHTVEKG HK GPNL+G+FGR SG GYSY+ A
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDAAIKKN 61
Query: 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 111
V W+E + +YL NP KYIPGTKM F GLKK +DR DLI YLK++T
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKAT 107
>pdb|1CRG|A Chain A, The Role Of A Conserved Internal Water Molecule And Its
Associated Hydrogen Bond Network In Cytochrome C
Length = 108
Score = 132 bits (332), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 75/106 (70%)
Query: 6 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMA 65
E G+AK G +FKT+C QCHTVEKG HK GPNL+G+FGR SG GYSY+ A
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDAIIKKN 61
Query: 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 111
V W+E + +YL NP KYIPGTKM F GLKK +DR DLI YLK++T
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKAT 107
>pdb|2B10|B Chain B, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|D Chain D, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
Length = 108
Score = 132 bits (331), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 63/105 (60%), Positives = 75/105 (71%)
Query: 6 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMA 65
E G+AK G +FKT+C QCHTVEKG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQS 110
V W+E + +YL NPKKYIPGTKM GLKK +DR DLI YLK++
Sbjct: 62 VLWDENNMSEYLTNPKKYIPGTKMASGGLKKEKDRNDLITYLKKA 106
>pdb|1CHI|A Chain A, Structural Studies Of The Roles Of Residues 82 And 85 At
The Interactive Face Of Cytochrome C
Length = 108
Score = 131 bits (330), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 75/106 (70%)
Query: 6 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMA 65
E G+AK G +FKT+C QCHTVEKG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 111
V W+E + +YL NP KYIPGTKM + G KK +DR DLI YLK++T
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMAYGGAKKEKDRNDLITYLKKAT 107
>pdb|1CRI|A Chain A, The Role Of A Conserved Internal Water Molecule And Its
Associated Hydrogen Bond Network In Cytochrome C
pdb|1CRJ|A Chain A, The Role Of A Conserved Internal Water Molecule And Its
Associated Hydrogen Bond Network In Cytochrome C
Length = 108
Score = 130 bits (328), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 75/106 (70%)
Query: 6 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMA 65
E G+AK G +FKT+C QCHTVEKG HK GPNL+G+FGR SG GYSY+ A
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDAIIKKN 61
Query: 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 111
V W+E + ++L NP KYIPGTKM F GLKK +DR DLI YLK++T
Sbjct: 62 VLWDENNMSEFLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKAT 107
>pdb|1CRH|A Chain A, The Role Of A Conserved Internal Water Molecule And Its
Associated Hydrogen Bond Network In Cytochrome C
Length = 108
Score = 130 bits (326), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 74/105 (70%)
Query: 6 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMA 65
E G+AK G +FKT+C QCHTVEKG HK GPNL+G+FGR SG GYSY+ A
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDAIIKKN 61
Query: 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQS 110
V W+E + +YL NP KYIPGTKM F GLKK +DR DLI YLK++
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKA 106
>pdb|1YTC|A Chain A, Thermodynamic Cycles As Probes Of Structure-Function
Relationships In Unfolded Proteins
Length = 112
Score = 130 bits (326), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 58/102 (56%), Positives = 75/102 (73%)
Query: 9 PGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNW 68
PG+AK G +FKT+C QCHT+E+G +K GPNL+G+FGR SG GYSY+ A N V W
Sbjct: 9 PGSAKKGATLFKTRCQQCHTIEEGGPNKVGPNLHGIFGRHSGQVKGYSYTDAIINKNVKW 68
Query: 69 EEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQS 110
+E ++ +YL NP KYIPGTKM F GLKK +DR DLI Y+ ++
Sbjct: 69 DEDSMSEYLTNPXKYIPGTKMAFAGLKKEKDRNDLITYMTKA 110
>pdb|1RAQ|A Chain A, The Structure And Function Of Omega Loop A Replacements In
Cytochrome C
Length = 108
Score = 129 bits (325), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 60/105 (57%), Positives = 75/105 (71%)
Query: 6 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMA 65
E G+AK G +FKT+C QCHTV++G +K GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVDQGGANKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQS 110
V W+E + +YL NP KYIPGTKM F GLKK +DR DLI YLK++
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKA 106
>pdb|1RAP|A Chain A, The Structure And Function Of Omega Loop A Replacements In
Cytochrome C
Length = 108
Score = 127 bits (320), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 59/105 (56%), Positives = 74/105 (70%)
Query: 6 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMA 65
E G+AK G +FKT+C QCHT ++G +K GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTFDQGGANKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQS 110
V W+E + +YL NP KYIPGTKM F GLKK +DR DLI YLK++
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKA 106
>pdb|1CIG|A Chain A, Structural And Functional Effects Of Multiple Mutations At
Distal Sites In Cytochrome C
Length = 108
Score = 127 bits (319), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 73/105 (69%)
Query: 6 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMA 65
E G+AK G +FKT+C QCHTVEKG HK GPNL+G+FG SG GYSY+ A
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGAHSGQAEGYSYTDAIIKKN 61
Query: 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQS 110
V W+E + +YL NP KYIPGTKM F GLKK +DR DLI YLK++
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKA 106
>pdb|1CIF|A Chain A, Structural And Functional Effects Of Multiple Mutations At
Distal Sites In Cytochrome C
Length = 108
Score = 127 bits (318), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 73/105 (69%)
Query: 6 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMA 65
E G+AK G +FKT+C QCHTVEKG HK GPNL+G+FG SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGAHSGQAEGYSYTDANIKKN 61
Query: 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQS 110
V W+E + +YL NP KYIPGTKM GLKK +DR DLI YLK++
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMASGGLKKEKDRNDLITYLKKA 106
>pdb|1CIE|A Chain A, Structural And Functional Effects Of Multiple Mutations At
Distal Sites In Cytochrome C
Length = 108
Score = 127 bits (318), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 73/105 (69%)
Query: 6 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMA 65
E G+AK G +FKT+C QCHTVEKG HK GPNL+G+FGR SG GYSY+ A
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDAIIKKN 61
Query: 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQS 110
V W+E + +YL NP KYIPGTKM GLKK +DR DLI YLK++
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMASGGLKKEKDRNDLITYLKKA 106
>pdb|1CIH|A Chain A, Structural And Functional Effects Of Multiple Mutations At
Distal Sites In Cytochrome C
Length = 108
Score = 124 bits (310), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/105 (57%), Positives = 72/105 (68%)
Query: 6 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMA 65
E G+AK G +FKT+C QCHTVEKG HK GPNL+G+FG SG GYSY+ A
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGAHSGQAEGYSYTDAIIKKN 61
Query: 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQS 110
V W+E + +YL NP KYIPGTKM GLKK +DR DLI YLK++
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMASGGLKKEKDRNDLITYLKKA 106
>pdb|2YK3|A Chain A, Crithidia Fasciculata Cytochrome C
pdb|2YK3|B Chain B, Crithidia Fasciculata Cytochrome C
pdb|2YK3|C Chain C, Crithidia Fasciculata Cytochrome C
Length = 114
Score = 122 bits (307), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 58/101 (57%), Positives = 70/101 (69%)
Query: 8 PPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVN 67
PPG+A GEK+FK + AQCHT +G + GPNL GL GR SGT GY+YS AN V
Sbjct: 10 PPGDAARGEKLFKGRAAQCHTANQGGANGVGPNLYGLVGRHSGTIEGYAYSKANAESGVV 69
Query: 68 WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 108
W L YL NP K++PGTKM F G+KKPQ+RAD+IAYL+
Sbjct: 70 WTPDVLDVYLENPXKFMPGTKMSFAGMKKPQERADVIAYLE 110
>pdb|4DY9|A Chain A, Leishmania Major Peroxidase Is A Cytochrome C Peroxidase
pdb|4GED|B Chain B, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 113
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/101 (54%), Positives = 70/101 (69%)
Query: 8 PPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVN 67
PPG+ + GEK+FK + AQCHT KG + GPNL G+ R SG G++YS AN V
Sbjct: 10 PPGDVERGEKLFKGRAAQCHTATKGGSNGVGPNLFGIVNRPSGKVEGFTYSKANAESGVI 69
Query: 68 WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 108
W + L YL NPKK++PGTKM F G+KKPQ+RAD+IAYL+
Sbjct: 70 WTPEVLDVYLENPKKFMPGTKMSFAGIKKPQERADVIAYLE 110
>pdb|1CO6|A Chain A, Crystal Structure Of Ferrocytochrome C2 From
Rhodopseudomonas Viridis
pdb|1IO3|A Chain A, Crystal Structure Of Ferricytochrome C2 From
Rhodopseudomonas Viridis
pdb|1CRY|A Chain A, Application Of An Automatic Molecular Replacement
Procedure To Crystal Structure Of Cytochrome C2 From
Rhodopseudomonas Viridis
Length = 107
Score = 115 bits (288), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 11 NAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEE 70
+A +GE++FK +C CH++ GA +K GP LNGLFGR SGT G++YS ANKN + W E
Sbjct: 2 DAASGEQVFK-QCLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTE 60
Query: 71 KTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 112
+ +Y+ +PK IPGTKM+F G+K Q +DLIAY+KQ A
Sbjct: 61 EVFREYIRDPKAKIPGTKMIFAGVKDEQKVSDLIAYIKQFNA 102
>pdb|1HRO|A Chain A, Molecular Structure Of A High Potential Cytochrome C2
Isolated From Rhodopila Globiformis
pdb|1HRO|B Chain B, Molecular Structure Of A High Potential Cytochrome C2
Isolated From Rhodopila Globiformis
Length = 106
Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 67/102 (65%), Gaps = 1/102 (0%)
Query: 7 APPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAV 66
APPG+ G+ +F T C CHT KGA +K GP+L G+ GR SG PGY+YS AN +
Sbjct: 3 APPGDPVEGKHLFHTICITCHTDIKGA-NKVGPSLYGVVGRHSGIEPGYNYSEANIKSGI 61
Query: 67 NWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 108
W L+ Y+ +P+K +PGTKM +PG PQ RAD+IAYL+
Sbjct: 62 VWTPDVLFKYIEHPQKIVPGTKMGYPGQPDPQKRADIIAYLE 103
>pdb|1QN2|A Chain A, Cytochrome Ch From Methylobacterium Extorquens
pdb|1QN2|B Chain B, Cytochrome Ch From Methylobacterium Extorquens
pdb|1QN2|C Chain C, Cytochrome Ch From Methylobacterium Extorquens
Length = 100
Score = 85.5 bits (210), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 62/103 (60%), Gaps = 5/103 (4%)
Query: 10 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGT-TPGYSYSAANKNMAVNW 68
G+A AGEK F C CH EK + GP L G+ G ++G GY++S A K + W
Sbjct: 2 GDAAAGEKAF-APCKACHNFEK---NGVGPTLKGVVGAKAGEGADGYAFSDALKKSGLTW 57
Query: 69 EEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 111
++ L +L +PKK +PGTKMVFPG+ P+ D+IAYLK +
Sbjct: 58 DQADLKQWLADPKKKVPGTKMVFPGISDPKKVDDIIAYLKTKS 100
>pdb|3M97|X Chain X, Structure Of The Soluble Domain Of Cytochrome C552 With
Its Flexible Linker Segment From Paracoccus
Denitrificans
Length = 140
Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 58/95 (61%), Gaps = 3/95 (3%)
Query: 14 AGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTL 73
AGEK+F KC CH ++ G GP+LNG+ GR G++YS K +W + L
Sbjct: 46 AGEKVFG-KCKACHKLDGNDG--VGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPEAL 102
Query: 74 YDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 108
++L NPK + GTKM F GL K +DRA+LIAYL+
Sbjct: 103 QEFLTNPKAVVKGTKMAFAGLPKIEDRANLIAYLE 137
>pdb|1C7M|A Chain A, Solution Structure Of The Functional Domain Of Paracoccus
Denitrificans Cytochrome C552 In The Reduced State
pdb|1I6D|A Chain A, Solution Structure Of The Functional Domain Of Paracoccus
Denitrificans Cytochrome C552 In The Reduced State
pdb|1I6E|A Chain A, Solution Structure Of The Functional Domain Of Paracoccus
Denitrificans Cytochrome C552 In The Oxidized State
Length = 100
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 58/95 (61%), Gaps = 3/95 (3%)
Query: 14 AGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTL 73
AGEK+F KC CH ++ G GP+LNG+ GR G++YS K +W + L
Sbjct: 6 AGEKVF-GKCKACHKLDGNDG--VGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPEAL 62
Query: 74 YDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 108
++L NPK + GTKM F GL K +DRA+LIAYL+
Sbjct: 63 QEFLTNPKAVVKGTKMAFAGLPKIEDRANLIAYLE 97
>pdb|1QL3|A Chain A, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Reduced State
pdb|1QL3|B Chain B, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Reduced State
pdb|1QL3|C Chain C, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Reduced State
pdb|1QL3|D Chain D, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Reduced State
pdb|1QL4|A Chain A, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Oxidised State
pdb|1QL4|B Chain B, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Oxidised State
pdb|1QL4|C Chain C, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Oxidised State
pdb|1QL4|D Chain D, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Oxidised State
Length = 99
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 58/95 (61%), Gaps = 3/95 (3%)
Query: 14 AGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTL 73
AGEK+F KC CH ++ G GP+LNG+ GR G++YS K +W + L
Sbjct: 5 AGEKVF-GKCKACHKLDGNDG--VGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPEAL 61
Query: 74 YDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 108
++L NPK + GTKM F GL K +DRA+LIAYL+
Sbjct: 62 QEFLTNPKAVVKGTKMAFAGLPKIEDRANLIAYLE 96
>pdb|1JDL|A Chain A, Structure Of Cytochrome C2 From Rhodospirillum Centenum
Length = 121
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 60/117 (51%), Gaps = 19/117 (16%)
Query: 10 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANK---NMAV 66
G+ GE +FK KC CH V A + GP L G+ RQ+GT PG++YSA N +
Sbjct: 3 GDPAKGEAVFK-KCMACHRVGPDAKNLVGPALTGVIDRQAGTAPGFNYSAINHAAGEAGL 61
Query: 67 NWEEKTLYDYLLNPKKYIP--------------GTKMVFPGLKKPQDRADLIAYLKQ 109
+W + + YL +P ++ TKMVF L Q+R D++AYLKQ
Sbjct: 62 HWTPENIIAYLPDPNAFLRKFLADAGHAEQAKGSTKMVFK-LPDEQERKDVVAYLKQ 117
>pdb|2C2C|A Chain A, Refinement Of The Crystal Structure Of Oxidized
Rhodospirillum Rubrum Cytochrome C2
pdb|3C2C|A Chain A, Refinement Of The Crystal Structure Of Oxidized
Rhodospirillum Rubrum Cytochrome C2
Length = 112
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 58/110 (52%), Gaps = 13/110 (11%)
Query: 10 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNM---AV 66
G+A AGEK+ K KC CHT ++G +K GPNL G+F + Y+YS + M +
Sbjct: 2 GDAAAGEKVSK-KCLACHTFDQGGANKVGPNLFGVFENTAAHKDNYAYSESYTEMKAKGL 60
Query: 67 NWEEKTLYDYLLNPKKYI--------PGTKMVFPGLKKPQDRADLIAYLK 108
W E L Y+ NPK ++ +KM F L K + ++IAYLK
Sbjct: 61 TWTEANLAAYVKNPKAFVLEKSGDPKAKSKMTFK-LTKDDEIENVIAYLK 109
>pdb|1HH7|A Chain A, Refined Crystal Structure Of Cytochrome C2 From
Rhodopseudomonas Palustris At 1.4 Angstrom Resolution
pdb|1I8O|A Chain A, Rhodopseudomonas Palustris Cyt C2 Ammonia Complex At 1.15
Angstrom Resolution
pdb|1I8P|A Chain A, Structure Determination Of The Ferrocytochrome C2 From
Rhodopseudomonas Palustris
pdb|1I8P|B Chain B, Structure Determination Of The Ferrocytochrome C2 From
Rhodopseudomonas Palustris
pdb|1I8P|C Chain C, Structure Determination Of The Ferrocytochrome C2 From
Rhodopseudomonas Palustris
pdb|1I8P|D Chain D, Structure Determination Of The Ferrocytochrome C2 From
Rhodopseudomonas Palustris
pdb|1FJ0|A Chain A, Structure Determination Of The Ferricytochrome C2 From
Rhodopseudomonas Palustris
pdb|1FJ0|B Chain B, Structure Determination Of The Ferricytochrome C2 From
Rhodopseudomonas Palustris
pdb|1FJ0|C Chain C, Structure Determination Of The Ferricytochrome C2 From
Rhodopseudomonas Palustris
pdb|1FJ0|D Chain D, Structure Determination Of The Ferricytochrome C2 From
Rhodopseudomonas Palustris
Length = 114
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 22/114 (19%)
Query: 11 NAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKN---MAVN 67
+AKAGE +FK +C CH +K + GP L G+ GR++GT G++YS N N +
Sbjct: 2 DAKAGEAVFK-QCMTCHRADK---NMVGPALAGVVGRKAGTAAGFTYSPLNHNSGEAGLV 57
Query: 68 WEEKTLYDYLLNPKKYIPG--------------TKMVFPGLKKPQDRADLIAYL 107
W + YL +P ++ TKM F L Q R D++AYL
Sbjct: 58 WTADNIVPYLADPNAFLKKFLTEKGKADQAVGVTKMTFK-LANEQQRKDVVAYL 110
>pdb|1COT|A Chain A, X-Ray Structure Of The Cytochrome C2 Isolated From
Paracoccus Denitrificans Refined To 1.7 Angstroms
Resolution
Length = 129
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 23/121 (19%)
Query: 10 GNAKAGEKIFKTKCAQCHTVEKGAGH------KQGPNLNGLFGRQSGTTPGYSY-----S 58
G+A GEK F KC CH ++ G K GPNL G+ GR+ + G+ Y
Sbjct: 3 GDAAKGEKEF-NKCKACHMIQAPDGTDIIKGGKTGPNLYGVVGRKIASEEGFKYGEGILE 61
Query: 59 AANKNMAVNWEEKTLYDYLLNPKKYI--------PGTKMVFPGLKKPQDRADLIAYLKQS 110
A KN + W E L +Y+ +PK ++ TKM F K +++AD++A+L Q+
Sbjct: 62 VAEKNPDLTWTEADLIEYVTDPKPWLVKMTDDKGAKTKMTF---KMGKNQADVVAFLAQN 118
Query: 111 T 111
+
Sbjct: 119 S 119
>pdb|2BGV|X Chain X, X-Ray Structure Of Ferric Cytochrome C-550 From Paracoccus
Versutus
Length = 134
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 23/121 (19%)
Query: 10 GNAKAGEKIFKTKCAQCHTVEK------GAGHKQGPNLNGLFGRQSGTTPGYSY-----S 58
G+A GEK F KC CH V+ G K GPNL G+ GR+ + G+ Y
Sbjct: 3 GDAAKGEKEF-NKCKACHMVQAPDGTDIVKGGKTGPNLYGVVGRKIASVEGFKYGDGILE 61
Query: 59 AANKNMAVNWEEKTLYDYLLNPKKYI--------PGTKMVFPGLKKPQDRADLIAYLKQS 110
A KN + W E L +Y+ +PK ++ TKM F K +++AD++A+L Q
Sbjct: 62 VAEKNPDMVWSEADLIEYVTDPKPWLVEKTGDSAAKTKMTF---KLGKNQADVVAFLAQH 118
Query: 111 T 111
+
Sbjct: 119 S 119
>pdb|155C|A Chain A, The Structure Of Paracoccus Denitrificans Cytochrome C550
Length = 135
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 22/119 (18%)
Query: 10 GNAKAGEKIFKTKCAQCHTVE-----KGAGHKQGPNLNGLFGRQSGTTPGYSY-----SA 59
G+A GEK F KC CH ++ G K GPNL G+ GR+ + G+ Y
Sbjct: 4 GDAAKGEKEF-NKCKACHMIQAPDGTDIKGGKTGPNLYGVVGRKIASEEGFKYGEGILEV 62
Query: 60 ANKNMAVNWEEKTLYDYLLNPKKYI--------PGTKMVFPGLKKPQDRADLIAYLKQS 110
A KN + W E L +Y+ +PK + TKM F K +++AD++A+L Q
Sbjct: 63 AEKNPDLTWTEANLIEYVTDPKPLVKKMTDDKGAKTKMTF---KMGKNQADVVAFLAQD 118
>pdb|2BH4|X Chain X, X-Ray Structure Of The M100k Variant Of Ferric Cyt C-550
From Paracoccus Versutus Determined At 100 K.
pdb|2BH5|X Chain X, X-Ray Structure Of The M100k Variant Of Ferric Cyt C-550
From Paracoccus Versutus Determined At 295 K
Length = 134
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 23/121 (19%)
Query: 10 GNAKAGEKIFKTKCAQCHTVEK------GAGHKQGPNLNGLFGRQSGTTPGYSY-----S 58
G+A GEK F KC CH V+ G K GPNL G+ GR+ + G+ Y
Sbjct: 3 GDAAKGEKEF-NKCKACHMVQAPDGTDIVKGGKTGPNLYGVVGRKIASVEGFKYGDGILE 61
Query: 59 AANKNMAVNWEEKTLYDYLLNPKKYI--------PGTKMVFPGLKKPQDRADLIAYLKQS 110
A KN + W E L +Y+ +PK ++ TK F K +++AD++A+L Q
Sbjct: 62 VAEKNPDMVWSEADLIEYVTDPKPWLVEKTGDSAAKTKKTF---KLGKNQADVVAFLAQH 118
Query: 111 T 111
+
Sbjct: 119 S 119
>pdb|1VYD|A Chain A, Crystal Structure Of Cytochrome C2 Mutant G95e
pdb|1VYD|B Chain B, Crystal Structure Of Cytochrome C2 Mutant G95e
Length = 116
Score = 48.5 bits (114), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 18/115 (15%)
Query: 10 GNAKAGEKIFKTKCAQCHTV------EKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKN 63
G+A GEK F KC CH++ E G K GPNL G+ GR +GT P + Y +
Sbjct: 1 GDAAKGEKEF-NKCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVA 59
Query: 64 MAVN---WEEKTLYDYLLNPKKYI--------PGTKMVFPGLKKPQDRADLIAYL 107
+ + W E+ + Y+ +P ++ T+M F K +D A +A +
Sbjct: 60 LGASGFAWTEEDIATYVKDPGAFLKEKLDDKKAKTEMAFKLAKGGEDVAAYLASV 114
>pdb|2CXB|A Chain A, Crystallization And X-Ray Structure Determination Of
Cytochrome C2 From Rhodobacter Sphaeroides In Three
Crystal Forms
pdb|2CXB|B Chain B, Crystallization And X-Ray Structure Determination Of
Cytochrome C2 From Rhodobacter Sphaeroides In Three
Crystal Forms
pdb|1L9B|C Chain C, X-ray Structure Of The Cytochrome-c(2)-photosynthetic
Reaction Center Electron Transfer Complex From
Rhodobacter Sphaeroides In Type Ii Co- Crystals
pdb|1L9J|C Chain C, X-Ray Structure Of The Cytochrome-C(2)-Photosynthetic
Reaction Center Electron Transfer Complex From
Rhodobacter Sphaeroides In Type I Co- Crystals
pdb|1L9J|D Chain D, X-Ray Structure Of The Cytochrome-C(2)-Photosynthetic
Reaction Center Electron Transfer Complex From
Rhodobacter Sphaeroides In Type I Co- Crystals
pdb|1CXA|A Chain A, Crystallization And X-Ray Structure Determination Of
Cytochrome C2 From Rhodobacter Sphaeroides In Three
Crystal Forms
pdb|1CXC|A Chain A, Crystallization And X-Ray Structure Determination Of
Cytochrome C2 From Rhodobacter Sphaeroides In Three
Crystal Forms
Length = 124
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 21/119 (17%)
Query: 10 GNAKAGEKIFKTKCAQCHTVEKGAGH-------KQGPNLNGLFGRQSGTTPGY-SYSAAN 61
G+ +AG K F +C CH + +G K GPNL G+ GR +GT + Y
Sbjct: 3 GDPEAGAKAF-NQCQTCHVIVDDSGTTIAGRNAKTGPNLYGVVGRTAGTQADFKGYGEGM 61
Query: 62 KNM---AVNWEEKTLYDYLLNPKKYI--------PGTKMVFPGLKKPQDRADLIAYLKQ 109
K + W+E+ Y+ +P K++ KM F LKK D ++ AYL+Q
Sbjct: 62 KEAGAKGLAWDEEHFVQYVQDPTKFLKEYTGDAKAKGKMTFK-LKKEADAHNIWAYLQQ 119
>pdb|1C2R|A Chain A, Molecular Structure Of Cytochrome C2 Isolated From
Rhodobacter Capsulatus Determined At 2.5 Angstroms
Resolution
pdb|1C2R|B Chain B, Molecular Structure Of Cytochrome C2 Isolated From
Rhodobacter Capsulatus Determined At 2.5 Angstroms
Resolution
Length = 116
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 10 GNAKAGEKIFKTKCAQCHTV------EKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKN 63
G+A GEK F KC CH++ E G K GPNL G+ GR +GT P + Y +
Sbjct: 1 GDAAKGEKEF-NKCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVA 59
Query: 64 MAVN---WEEKTLYDYLLNPKKYI 84
+ + W E+ + Y+ +P ++
Sbjct: 60 LGASGFAWTEEDIATYVKDPGAFL 83
>pdb|1C2N|A Chain A, Cytochrome C2, Nmr, 20 Structures
Length = 137
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 15 GEKIFKTKCAQCHTV------EKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVN- 67
GEK F KC CH++ E G K GPNL G+ GR +GT P + Y + + +
Sbjct: 27 GEKEF-NKCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVALGASG 85
Query: 68 --WEEKTLYDYLLNPKKYI 84
W E+ + Y+ +P ++
Sbjct: 86 FAWTEEDIATYVKDPGAFL 104
>pdb|2L4D|A Chain A, Cytochrome C Domain Of Pp3183 Protein From Pseudomonas
Putida
Length = 110
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 10 GNAKAGEKIFKTKCAQCHTV 29
G+ +GE+IF+T+C+ CHTV
Sbjct: 1 GSFTSGEQIFRTRCSSCHTV 20
>pdb|1B1X|A Chain A, Structure Of Diferric Mare Lactoferrin At 2.62a Resolution
pdb|1B7Z|A Chain A, Structure Of Oxalate Substituted Diferric Mare Lactoferrin
From Colostrum
pdb|1B7U|A Chain A, Structure Of Mare Apolactoferrin: The N And C Lobes Are In
The Closed Form
pdb|1QJM|A Chain A, Crystal Structure Of A Complex Of Lactoferrin With A
Lanthanide Ion (Sm3+) At 3.4 Anstrom Resolution
pdb|1I6B|A Chain A, Structure Of Equine Apolactoferrin At 3.2 A Resolution
Using Crystals Grown At 303k
pdb|3CR9|A Chain A, Crystal Structure Of The Complex Of Lactoferrin With 6-
(Hydroxymethyl)oxane-2,3,4,5-Tetrol At 3.49 A Resolution
Length = 689
Score = 32.3 bits (72), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 24 AQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKY 83
A+C ++ +GP+++ + R++ + AANK AV + +Y+ L+P K
Sbjct: 17 AKCAKFQRNMKKVRGPSVSCI--RKTSSFECIQAIAANKADAVTLDGGLVYEAGLHPYKL 74
Query: 84 IPGTKMVFPGLKKPQDRADLIAYLKQST 111
P V+ KPQ R +A +K+ +
Sbjct: 75 RPVAAEVYQTRGKPQTRYYAVAVVKKGS 102
>pdb|1F9B|A Chain A, Melanin Protein Interaction: X-Ray Structure Of The
Complex Of Mare Lactoferrin With Melanin Monomers
Length = 695
Score = 32.3 bits (72), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 24 AQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKY 83
A+C ++ +GP+++ + R++ + AANK AV + +Y+ L+P K
Sbjct: 23 AKCAKFQRNMKKVRGPSVSCI--RKTSSFECIQAIAANKADAVTLDGGLVYEAGLHPYKL 80
Query: 84 IPGTKMVFPGLKKPQDRADLIAYLKQST 111
P V+ KPQ R +A +K+ +
Sbjct: 81 RPVAAEVYQTRGKPQTRYYAVAVVKKGS 108
>pdb|2YEV|B Chain B, Structure Of Caa3-Type Cytochrome Oxidase
pdb|2YEV|E Chain E, Structure Of Caa3-Type Cytochrome Oxidase
Length = 337
Score = 32.3 bits (72), Expect = 0.072, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 15/109 (13%)
Query: 2 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQ-GPNLNGLFGRQSGTTPGYSYSAA 60
A AP + + G+++F+ CA CH V + GP L GL+G ++ G
Sbjct: 227 AKASPAPVADER-GQQVFQQNCAACHGVARSMPPAVIGPEL-GLWGNRTSLGAG------ 278
Query: 61 NKNMAVNWEEKTLYDYLLNPKKYIPGTKMV-FPGLKKPQDRADLIAYLK 108
V + L ++ +P PG KM FP L + +D L+ YL+
Sbjct: 279 ----IVENTPENLKAWIRDPAGMKPGVKMPGFPQLSE-EDLDALVRYLE 322
>pdb|1F1C|A Chain A, Crystal Structure Of Cytochrome C549
pdb|1F1C|B Chain B, Crystal Structure Of Cytochrome C549
Length = 129
Score = 28.5 bits (62), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 15/71 (21%)
Query: 13 KAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKT 72
K G+++F CAQCH + + P++N + TP AA
Sbjct: 25 KKGQQVFNAACAQCHAL---GVTRTNPDVNLSPEALALATPPRDNIAA------------ 69
Query: 73 LYDYLLNPKKY 83
L DY+ NP Y
Sbjct: 70 LVDYIKNPTTY 80
>pdb|3CP5|A Chain A, Cytochrome C From Rhodothermus Marinus
Length = 124
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 36/110 (32%)
Query: 12 AKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEK 71
A+ GE++F T C CH +++ GP L + R+ P Y
Sbjct: 34 AQQGEQLFNTYCTACHRLDE---RFIGPALRDVTKRRG---PVY---------------- 71
Query: 72 TLYDYLLNPKKYIP------------GTKMVFPGLKKPQDRADLIAYLKQ 109
+ + +LNP I GT M L + Q RA ++ YL+Q
Sbjct: 72 -IMNVMLNPNGMIQRHPVMKQLVQEYGTMMTDMALSEEQARA-ILEYLRQ 119
>pdb|3DMI|A Chain A, Crystallization And Structural Analysis Of Cytochrome C6
From The Diatom Phaeodactylum Tricornutum At 1.5 A
Resolution
Length = 88
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 10 GNAKAGEKIFKTKCAQCH 27
G+ AGE+IF CA CH
Sbjct: 1 GDVGAGEQIFNANCAACH 18
>pdb|1KB9|D Chain D, Yeast Cytochrome Bc1 Complex
pdb|1P84|D Chain D, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
Length = 246
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 26/92 (28%)
Query: 3 SFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN- 61
+FD A + + G ++++ CA CH++++ A T G S++
Sbjct: 23 TFDHA---SIRRGYQVYREVCAACHSLDRVAWR---------------TLVGVSHTNEEV 64
Query: 62 KNMAVNWEEKTLYDYLLNPKK-------YIPG 86
+NMA +E D NPKK YIPG
Sbjct: 65 RNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPG 96
>pdb|1KYO|D Chain D, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|O Chain O, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|2IBZ|D Chain D, Yeast Cytochrome Bc1 Complex With Stigmatellin
pdb|3CX5|D Chain D, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core
Interface For Electron Transfer.
pdb|3CX5|O Chain O, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core
Interface For Electron Transfer.
pdb|3CXH|D Chain D, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome
C Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|O Chain O, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome
C Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 248
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 26/92 (28%)
Query: 3 SFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN- 61
+FD A + + G ++++ CA CH++++ A T G S++
Sbjct: 23 TFDHA---SIRRGYQVYREVCAACHSLDRVAWR---------------TLVGVSHTNEEV 64
Query: 62 KNMAVNWEEKTLYDYLLNPKK-------YIPG 86
+NMA +E D NPKK YIPG
Sbjct: 65 RNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPG 96
>pdb|1EZV|D Chain D, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
Length = 245
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 26/92 (28%)
Query: 3 SFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN- 61
+FD A + + G ++++ CA CH++++ A T G S++
Sbjct: 23 TFDHA---SIRRGYQVYREVCAACHSLDRVAWR---------------TLVGVSHTNEEV 64
Query: 62 KNMAVNWEEKTLYDYLLNPKK-------YIPG 86
+NMA +E D NPKK YIPG
Sbjct: 65 RNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPG 96
>pdb|3QIB|D Chain D, Crystal Structure Of The 2b4 Tcr In Complex With MccI-Ek
Length = 270
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/13 (84%), Positives = 13/13 (100%)
Query: 99 DRADLIAYLKQST 111
+RADLIAYLKQ+T
Sbjct: 4 ERADLIAYLKQAT 16
>pdb|3O5C|A Chain A, Cytochrome C Peroxidase Bccp Of Shewanella Oneidensis
pdb|3O5C|B Chain B, Cytochrome C Peroxidase Bccp Of Shewanella Oneidensis
pdb|3O5C|C Chain C, Cytochrome C Peroxidase Bccp Of Shewanella Oneidensis
pdb|3O5C|D Chain D, Cytochrome C Peroxidase Bccp Of Shewanella Oneidensis
Length = 320
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 6 EAPPGNAKAGEKIFKTK-CAQCH 27
+A G+AKAG ++FK K C CH
Sbjct: 173 DAISGDAKAGYQLFKDKGCVSCH 195
>pdb|1GDV|A Chain A, Crystal Structure Of Cytochrome C6 From Red Alga
Porphyra Yezoensis At 1.57 A Resolution
Length = 85
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 15 GEKIFKTKCAQCH 27
GEK+F CA CH
Sbjct: 6 GEKVFSANCAACH 18
>pdb|1GM8|B Chain B, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
pdb|1GM7|B Chain B, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
pdb|1GKF|B Chain B, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
Length = 557
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 47 RQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDR---ADL 103
RQSG P K W+ K L + +NPK Y P + + PQ +DL
Sbjct: 199 RQSGHDPRLPVPGTGK-----WDWKGLLPFEMNPKVYNPQSGYIANWANSPQKDYPASDL 253
Query: 104 IAYL 107
A+L
Sbjct: 254 FAFL 257
>pdb|1FXH|B Chain B, Mutant Of Penicillin Acylase Impaired In Catalysis With
Phenylacetic Acid In The Active Site
pdb|1FXV|B Chain B, Penicillin Acylase Mutant Impaired In Catalysis With
Penicillin G In The Active Site
Length = 557
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 47 RQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDR---ADL 103
RQSG P K W+ K L + +NPK Y P + + PQ +DL
Sbjct: 199 RQSGHDPRLPVPGTGK-----WDWKGLLPFEMNPKVYNPQSGYIANWANSPQKDYPASDL 253
Query: 104 IAYL 107
A+L
Sbjct: 254 FAFL 257
>pdb|2C8S|A Chain A, Cytochrome Cl From Methylobacterium Extorquens
Length = 172
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 10/34 (29%)
Query: 13 KAGEKIFKTKCAQCHTVEKGAGH----KQGPNLN 42
+ GE +F T C+ CH GH K GP LN
Sbjct: 55 RNGESLFATSCSGCH------GHLAEGKLGPGLN 82
>pdb|2ZON|G Chain G, Crystal Structure Of Electron Transfer Complex Of
Nitrite Reductase With Cytochrome C
Length = 87
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 6 EAPPGNAKAGEKIFKTKCAQCHT 28
+AP AGEK++++ C CH
Sbjct: 3 DAPAQLDPAGEKLYRSACVVCHA 25
>pdb|1E3A|B Chain B, A Slow Processing Precursor Penicillin Acylase From
Escherichia Coli
Length = 560
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 47 RQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDR---ADL 103
RQSG P K W+ K L + +NPK Y P + + PQ +DL
Sbjct: 202 RQSGHDPRLPVPGTGK-----WDWKGLLPFEMNPKVYNPQSGYIANWNNSPQKDYPASDL 256
Query: 104 IAYL 107
A+L
Sbjct: 257 FAFL 260
>pdb|1PNK|B Chain B, Penicillin Acylase Has A Single-amino-acid Catalytic
Centre
pdb|1PNL|B Chain B, Penicillin Acylase Has A Single-amino-acid Catalytic
Centre
pdb|1PNM|B Chain B, Penicillin Acylase Has A Single-Amino-Acid Catalytic
Centre
pdb|1GM9|B Chain B, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
pdb|1GK9|B Chain B, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
pdb|1K7D|B Chain B, Penicillin Acylase With Phenyl Proprionic Acid
Length = 557
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 47 RQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDR---ADL 103
RQSG P K W+ K L + +NPK Y P + + PQ +DL
Sbjct: 199 RQSGHDPRLPVPGTGK-----WDWKGLLPFEMNPKVYNPQSGYIANWNNSPQKDYPASDL 253
Query: 104 IAYL 107
A+L
Sbjct: 254 FAFL 257
>pdb|1AI4|B Chain B, Penicillin Acylase Complexed With
3,4-Dihydroxyphenylacetic Acid
pdb|1AI5|B Chain B, Penicillin Acylase Complexed With M-Nitrophenylacetic Acid
pdb|1AI6|B Chain B, Penicillin Acylase With P-Hydroxyphenylacetic Acid
pdb|1AI7|B Chain B, Penicillin Acylase Complexed With Phenol
pdb|1AJN|B Chain B, Penicillin Acylase Complexed With P-Nitrophenylacetic Acid
pdb|1AJP|B Chain B, Penicillin Acylase Complexed With
2,5-Dihydroxyphenylacetic Acid
pdb|1AJQ|B Chain B, Penicillin Acylase Complexed With Thiopheneacetic Acid
Length = 557
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 47 RQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDR---ADL 103
RQSG P K W+ K L + +NPK Y P + + PQ +DL
Sbjct: 199 RQSGHDPRLPVPGTGK-----WDWKGLLPFEMNPKVYNPQSGYIANWNNSPQKDYPASDL 253
Query: 104 IAYL 107
A+L
Sbjct: 254 FAFL 257
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.131 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,893,745
Number of Sequences: 62578
Number of extensions: 155746
Number of successful extensions: 346
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 250
Number of HSP's gapped (non-prelim): 107
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)