Query 033761
Match_columns 112
No_of_seqs 116 out of 1077
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 09:43:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033761.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033761hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ccr_A Cytochrome C; electron 100.0 1.4E-28 4.9E-33 149.7 9.7 108 5-112 5-112 (112)
2 2w9k_A Cytochrome C, cytochrom 100.0 7.6E-28 2.6E-32 147.0 10.4 106 7-112 9-114 (114)
3 1ycc_A Cytochrome C; electron 100.0 1.1E-27 3.7E-32 144.9 10.1 106 7-112 3-108 (108)
4 1i54_A Cytochrome C; zinc-porp 99.9 2.3E-27 7.8E-32 142.2 9.8 103 10-112 1-103 (103)
5 3m97_X Cytochrome C-552, cytoc 99.9 1.3E-27 4.3E-32 151.0 8.9 100 9-111 41-140 (140)
6 1hro_A Cytochrome C2; electron 99.9 2.7E-27 9.1E-32 142.8 8.8 104 7-111 3-106 (106)
7 1co6_A Protein (cytochrome C2) 99.9 5.6E-27 1.9E-31 141.7 9.0 102 10-112 1-102 (107)
8 1cxc_A Cytochrome C2; electron 99.9 5E-27 1.7E-31 145.7 6.6 102 9-112 2-122 (124)
9 1vyd_A Cytochrome C2; electron 99.9 3.1E-27 1.1E-31 145.2 5.0 99 10-112 1-116 (116)
10 2bh4_X Cytochrome C-550; C-typ 99.9 3.7E-27 1.3E-31 148.1 5.4 99 9-111 2-119 (134)
11 3c2c_A Cytochrome C2; electron 99.9 1.7E-26 5.7E-31 140.7 6.7 100 10-111 2-112 (112)
12 155c_A Cytochrome C550; electr 99.9 3.4E-26 1.2E-30 143.8 7.5 99 9-111 3-119 (135)
13 1qn2_A Cytochrome CH; electron 99.9 9.4E-26 3.2E-30 134.8 8.1 98 10-111 2-100 (100)
14 1c2n_A Cytochrome C2; electron 99.9 1E-25 3.5E-30 141.9 6.0 99 10-112 22-137 (137)
15 1jdl_A C552, cytochrome C2, IS 99.9 2.9E-25 9.8E-30 136.7 7.1 102 9-112 2-120 (121)
16 1i8o_A Cytochrome C2; electron 99.9 4.6E-24 1.6E-28 130.4 6.3 96 10-111 1-114 (114)
17 1w2l_A Cytochrome oxidase subu 99.8 1E-20 3.4E-25 112.1 8.1 92 9-111 3-99 (99)
18 2c1d_B SOXX; sulfur oxidation, 99.8 5.1E-20 1.7E-24 115.5 7.5 86 7-112 21-137 (137)
19 1h32_B Cytochrome C, SOXX; ele 99.8 4.9E-20 1.7E-24 115.7 6.5 85 8-112 23-138 (138)
20 2l4d_A SCO1/SENC family protei 99.8 3.3E-20 1.1E-24 111.8 3.9 81 10-111 1-97 (110)
21 3o0r_C Nitric oxide reductase 99.8 7.4E-19 2.5E-23 111.0 6.9 88 7-111 44-133 (146)
22 1cno_A Cytochrome C552; electr 99.8 1.2E-19 4E-24 105.6 1.9 82 10-112 2-84 (87)
23 1c75_A Cytochrome C-553; heme, 99.7 2.6E-18 9E-23 96.3 5.6 70 14-111 2-71 (71)
24 3cp5_A Cytochrome C; electron 99.7 1.6E-18 5.6E-23 106.5 4.5 80 8-111 30-121 (124)
25 1cch_A Cytochrome C551; electr 99.7 1.3E-18 4.5E-23 99.7 3.7 79 14-111 2-82 (82)
26 1c53_A Cytochrome C553; electr 99.7 2.6E-18 9E-23 98.2 4.9 72 14-110 2-79 (79)
27 2exv_A Cytochrome C-551; alpha 99.7 2.5E-18 8.6E-23 98.6 4.4 79 14-111 2-82 (82)
28 2zzs_A Cytochrome C554; C-type 99.7 7.7E-19 2.6E-23 104.9 2.1 78 9-111 21-103 (103)
29 1e29_A Cytochrome C549; electr 99.7 7.9E-19 2.7E-23 110.1 2.1 89 8-111 22-123 (135)
30 3cu4_A Cytochrome C family pro 99.7 5.3E-18 1.8E-22 98.0 5.3 82 9-111 2-84 (85)
31 2gc4_D Cytochrome C-L; electro 99.7 2.9E-17 1E-21 104.0 9.1 83 8-111 42-124 (147)
32 1wve_C 4-cresol dehydrogenase 99.7 6E-18 2E-22 97.0 5.2 73 10-112 2-75 (80)
33 1f1c_A Cytochrome C549; dimeri 99.7 6.5E-18 2.2E-22 104.4 5.4 87 9-111 21-121 (129)
34 3ph2_B Cytochrome C6; photosyn 99.7 7.7E-18 2.6E-22 97.1 5.2 81 10-111 2-82 (86)
35 2ce0_A Cytochrome C6; chloropl 99.7 3.2E-17 1.1E-21 97.9 7.8 86 9-111 2-95 (105)
36 2d0s_A Cytochrome C, cytochrom 99.7 8.8E-18 3E-22 95.8 4.9 77 15-111 1-79 (79)
37 1gdv_A Cytochrome C6; RED ALGA 99.7 6E-18 2E-22 97.4 3.6 81 10-111 1-81 (85)
38 1f1f_A Cytochrome C6; heme, pr 99.7 8E-18 2.7E-22 97.7 4.1 85 10-111 1-85 (89)
39 3oa8_B SOXX; cytochrome, sulfu 99.7 8.4E-17 2.9E-21 107.1 9.0 85 8-111 94-203 (208)
40 3dmi_A Cytochrome C6; electron 99.7 1.4E-17 4.9E-22 96.4 4.6 83 10-111 1-83 (88)
41 2c8s_A Cytochrome C-L; HAEM, h 99.7 8.4E-17 2.9E-21 104.6 8.7 82 9-111 51-132 (172)
42 1ls9_A Cytochrome C6; omega lo 99.7 3.4E-17 1.2E-21 95.6 5.6 83 9-111 3-86 (91)
43 2d0w_A Cytochrome CL; electron 99.7 1.4E-16 4.8E-21 103.3 8.9 82 8-111 44-126 (170)
44 1c6r_A Cytochrome C6; electron 99.7 6.5E-17 2.2E-21 93.9 5.9 82 10-111 2-84 (89)
45 3dr0_A Cytochrome C6; photosyn 99.7 4.9E-17 1.7E-21 94.8 5.2 85 10-111 1-88 (93)
46 2zxy_A Cytochrome C552, cytoch 99.7 1.6E-17 5.4E-22 95.9 3.0 77 14-111 2-87 (87)
47 1a56_A C-551, ferricytochrome 99.7 1.1E-17 3.9E-22 95.8 2.2 78 15-111 1-81 (81)
48 2zon_G Cytochrome C551; nitrit 99.7 7.2E-18 2.5E-22 97.8 1.3 82 8-112 5-87 (87)
49 1cyi_A Cytochrome C6, cytochro 99.7 1.3E-16 4.3E-21 92.9 6.3 82 10-111 1-83 (90)
50 1ayg_A Cytochrome C-552; elect 99.7 3.4E-17 1.2E-21 93.7 3.8 76 17-111 3-80 (80)
51 3dp5_A OMCF, cytochrome C fami 99.7 1.1E-16 3.8E-21 95.2 4.9 80 9-109 16-96 (99)
52 2yev_B Cytochrome C oxidase su 99.4 3.3E-17 1.1E-21 116.3 0.0 88 12-111 236-325 (337)
53 3mk7_C Cytochrome C oxidase, C 99.6 1.3E-15 4.6E-20 106.9 7.2 83 9-112 219-303 (311)
54 1mz4_A Cytochrome C550; PSII a 99.6 4.9E-16 1.7E-20 97.2 3.9 85 9-111 23-123 (137)
55 1w5c_T Cytochrome C-550; photo 99.6 8.3E-16 2.8E-20 98.8 4.3 87 9-111 49-149 (163)
56 1kx2_A Mono-heme C-type cytoch 99.6 2.5E-16 8.6E-21 90.4 1.4 78 11-111 2-81 (81)
57 1c52_A Cytochrome-C552; electr 99.6 2.9E-16 1E-20 97.7 1.5 81 14-111 3-91 (131)
58 1m70_A Cytochrome C4; electron 99.6 4.4E-16 1.5E-20 101.7 2.3 83 9-111 97-190 (190)
59 1gks_A Cytochrome C551; haloph 99.6 2.2E-15 7.5E-20 85.8 4.2 73 14-110 1-77 (78)
60 1kb0_A Quinohemoprotein alcoho 99.6 2E-15 7E-20 115.0 5.3 83 7-111 588-670 (677)
61 1h1o_A Cytochrome C-552; elect 99.6 7E-16 2.4E-20 100.2 2.0 79 7-110 95-183 (183)
62 3mk7_B Cytochrome C oxidase, C 99.6 3.1E-15 1E-19 98.2 4.9 83 9-111 50-196 (203)
63 1cc5_A Cytochrome C5; electron 99.5 1.8E-15 6.3E-20 87.3 0.9 79 11-110 3-83 (83)
64 1kv9_A Type II quinohemoprotei 99.5 1.1E-14 3.8E-19 110.8 4.6 80 9-111 577-656 (668)
65 1yiq_A Quinohemoprotein alcoho 99.5 1.6E-14 5.5E-19 110.3 5.3 78 9-111 592-670 (689)
66 2xts_B Cytochrome; oxidoreduct 99.5 3.7E-14 1.3E-18 94.4 6.4 89 8-111 31-121 (205)
67 3vrd_A FCCA subunit, flavocyto 99.5 9E-15 3.1E-19 95.0 2.9 82 6-111 84-174 (174)
68 1nir_A Nitrite reductase; hemo 99.5 2.9E-14 1E-18 106.1 4.3 78 8-111 32-113 (543)
69 1qks_A Cytochrome CD1 nitrite 99.5 5E-14 1.7E-18 105.7 5.1 78 9-111 51-131 (567)
70 3mk7_C Cytochrome C oxidase, C 99.4 3.2E-14 1.1E-18 99.9 3.2 80 10-111 130-210 (311)
71 2zoo_A Probable nitrite reduct 99.4 3.1E-14 1.1E-18 103.8 3.1 82 10-111 337-425 (442)
72 1h1o_A Cytochrome C-552; elect 99.4 1.6E-14 5.3E-19 93.8 -0.1 82 9-111 3-87 (183)
73 3vrd_A FCCA subunit, flavocyto 99.4 6E-14 2E-18 91.1 1.9 71 17-111 5-77 (174)
74 1m70_A Cytochrome C4; electron 99.4 2.7E-13 9.2E-18 88.4 4.3 81 10-111 2-89 (190)
75 2blf_B SORB, sulfite\:cytochro 99.0 1.9E-10 6.4E-15 65.9 4.1 19 12-30 18-36 (81)
76 3oa8_A SOXA; cytochrome, sulfu 99.0 7.4E-11 2.5E-15 81.6 0.7 82 11-111 52-147 (275)
77 1zzh_A Cytochrome C peroxidase 98.9 8.2E-09 2.8E-13 73.0 8.6 36 67-111 268-303 (328)
78 3o5c_A Cytochrome C551 peroxid 98.9 1.2E-09 4E-14 77.0 3.9 37 66-111 255-291 (320)
79 4aan_A Cytochrome C551 peroxid 98.8 3.4E-09 1.2E-13 75.2 4.7 37 66-111 281-317 (341)
80 1iqc_A DI-heme peroxidase; pro 98.8 1.7E-09 5.7E-14 75.9 2.5 23 8-30 167-190 (308)
81 1h32_A SOXA, diheme cytochrome 98.8 4E-10 1.4E-14 77.3 -1.0 85 10-112 157-250 (261)
82 2c1v_A DI-HAEM cytochrome C pe 98.8 1.3E-08 4.3E-13 72.3 6.5 18 94-111 297-314 (338)
83 1nml_A DI-HAEM cytochrome C pe 98.8 1.1E-08 3.8E-13 72.2 5.8 19 94-112 283-301 (326)
84 2vhd_A Cytochrome C551 peroxid 98.7 1.4E-08 4.6E-13 71.7 5.8 18 94-111 283-300 (323)
85 2c1d_A SOXA; sulfur oxidation, 98.7 4.2E-09 1.4E-13 72.4 3.1 84 10-111 160-252 (264)
86 1e8e_A Cytochrome C''; oxidore 98.7 2.1E-09 7.1E-14 65.6 1.2 20 93-112 102-121 (124)
87 3a9f_A Cytochrome C; alpha hel 98.7 8.5E-09 2.9E-13 60.3 3.2 21 10-30 25-45 (92)
88 3cx5_D Cytochrome C1, heme pro 98.7 1.1E-07 3.7E-12 64.5 8.7 25 6-30 23-47 (248)
89 3hq9_A Cytochrome C551 peroxid 98.7 1.5E-08 5E-13 72.0 4.4 21 92-112 303-323 (345)
90 1jmx_A Amine dehydrogenase; ox 98.6 5.5E-09 1.9E-13 76.3 1.2 66 13-111 2-68 (494)
91 3sjl_A Methylamine utilization 98.6 2.2E-07 7.5E-12 66.6 9.0 23 7-29 184-207 (373)
92 1pp9_D Cytochrome C-1, cytochr 98.6 2.9E-07 9.8E-12 62.3 9.0 27 6-32 20-46 (241)
93 2yiu_B Cytochrome C1, heme pro 98.6 1.7E-07 5.8E-12 64.0 7.0 26 6-31 41-66 (263)
94 1dw0_A Cytochrome C; asparagin 98.6 4E-08 1.4E-12 59.1 3.2 82 9-110 19-112 (112)
95 3oa8_A SOXA; cytochrome, sulfu 98.5 3.6E-08 1.2E-12 68.1 3.0 88 10-111 163-263 (275)
96 2c1d_A SOXA; sulfur oxidation, 98.4 3.6E-08 1.2E-12 67.7 -0.1 19 94-112 128-146 (264)
97 1pby_A Quinohemoprotein amine 98.4 2.3E-07 8E-12 67.7 3.9 20 14-33 2-21 (489)
98 2qjy_B Cytochrome C1; cytochro 98.2 1.1E-05 3.7E-10 55.3 9.3 26 6-31 19-44 (269)
99 1h32_A SOXA, diheme cytochrome 98.2 6.8E-08 2.3E-12 66.2 -2.2 19 94-112 125-143 (261)
100 1zrt_D Cytochrome C1; cytochro 97.7 1.9E-05 6.4E-10 53.9 2.3 26 6-31 17-42 (258)
101 1zzh_A Cytochrome C peroxidase 97.5 0.00016 5.3E-09 51.1 5.5 24 8-31 30-62 (328)
102 1iqc_A DI-heme peroxidase; pro 97.3 0.0011 3.8E-08 46.3 7.4 16 96-111 135-150 (308)
103 2c1v_A DI-HAEM cytochrome C pe 97.1 0.0018 6.2E-08 45.9 7.4 22 9-30 42-72 (338)
104 2vhd_A Cytochrome C551 peroxid 97.1 0.0019 6.6E-08 45.4 6.9 22 9-30 28-58 (323)
105 1jmx_A Amine dehydrogenase; ox 97.0 3.6E-05 1.2E-09 56.5 -2.6 25 9-33 86-110 (494)
106 2fw5_A DHC, diheme cytochrome 96.9 0.0017 5.9E-08 40.3 4.8 16 14-29 15-30 (139)
107 2fwt_A DHC, diheme cytochrome 96.8 0.0042 1.5E-07 37.9 5.8 14 16-29 6-19 (125)
108 3hq9_A Cytochrome C551 peroxid 96.7 0.00079 2.7E-08 47.8 2.3 22 9-30 50-80 (345)
109 3o5c_A Cytochrome C551 peroxid 96.4 0.015 5E-07 40.9 7.5 22 9-30 24-54 (320)
110 3u99_A Diheme cytochrome C; cy 95.2 0.056 1.9E-06 33.8 5.6 13 17-29 13-25 (148)
111 1nml_A DI-HAEM cytochrome C pe 93.8 0.014 4.7E-07 41.1 0.5 22 9-30 28-58 (326)
112 1pby_A Quinohemoprotein amine 92.8 0.0098 3.3E-07 43.7 -1.6 21 10-30 87-107 (489)
113 4aan_A Cytochrome C551 peroxid 90.6 0.043 1.5E-06 38.9 -0.2 21 10-30 46-75 (341)
114 3sjl_A Methylamine utilization 86.9 0.11 3.7E-06 37.3 -0.3 21 10-30 9-38 (373)
115 3ayf_A Nitric oxide reductase; 85.9 0.34 1.2E-05 38.0 2.0 33 10-43 67-100 (800)
116 1ogy_B Diheme cytochrome C NAP 80.4 1.3 4.5E-05 27.0 2.6 11 22-32 97-107 (130)
117 3ml1_B NAPB, diheme cytochrome 76.9 1 3.6E-05 27.6 1.4 12 22-33 98-109 (135)
118 3b42_A GSU0935, methyl-accepti 75.3 0.86 3E-05 27.6 0.8 9 21-29 104-112 (135)
119 3b47_A GSU0582, methyl-accepti 73.9 0.87 3E-05 27.6 0.5 9 21-29 103-111 (134)
120 1jni_A NAPB;, diheme cytochrom 66.5 1.4 4.8E-05 26.6 0.3 10 22-31 96-105 (123)
121 1oqe_K Tumor necrosis factor r 64.8 0.96 3.3E-05 20.3 -0.5 10 21-30 15-24 (31)
122 2czs_A DHC2, cytochrome C, put 59.6 6.6 0.00023 21.6 2.2 9 20-28 34-42 (80)
123 3oao_A Uncharacterized protein 56.0 6.8 0.00023 24.3 2.1 18 92-109 77-94 (147)
124 2kvc_A Putative uncharacterize 54.2 12 0.0004 21.8 2.8 18 92-109 36-53 (103)
125 2lky_A Uncharacterized protein 54.0 12 0.00041 22.1 2.8 18 92-109 38-55 (112)
126 2m0n_A Putative uncharacterize 52.8 22 0.00076 21.0 3.8 17 92-108 38-54 (112)
127 1ci3_M Protein (cytochrome F); 51.1 3.3 0.00011 27.7 0.1 8 22-29 20-27 (249)
128 1hcz_A Cytochrome F; electron 50.9 3.3 0.00011 27.7 0.1 8 22-29 20-27 (252)
129 1e2w_A Cytochrome F; electron 50.8 3.3 0.00011 27.7 0.1 8 22-29 20-27 (251)
130 1vf5_C Cytochrome F; photosynt 47.3 4.1 0.00014 27.8 0.1 7 22-28 21-27 (289)
131 2hfg_R Tumor necrosis factor r 46.1 2.9 0.0001 20.8 -0.6 10 21-30 27-36 (51)
132 1p0t_A Tumor necrosis factor r 45.6 3.6 0.00012 21.4 -0.3 10 21-30 30-39 (63)
133 4g1a_A AQ-C16C19 peptide; heli 43.7 10 0.00036 16.5 1.1 11 18-28 11-21 (32)
134 3r1f_A ESX-1 secretion-associa 42.0 18 0.00062 21.7 2.4 18 94-111 111-128 (135)
135 3h34_A Cytochrome C7, cytochro 41.1 3.3 0.00011 22.3 -1.0 15 15-29 42-56 (70)
136 3ol3_A Putative uncharacterize 40.7 27 0.00092 20.4 2.9 18 92-109 41-58 (107)
137 1ehj_A Cytochrome C7; multi-he 39.5 4.7 0.00016 21.4 -0.5 15 15-29 40-55 (68)
138 2jxm_B Cytochrome F; copper, e 39.2 3.3 0.00011 27.6 -1.3 8 22-29 20-27 (249)
139 3mab_A Uncharacterized protein 39.0 25 0.00085 19.9 2.5 19 94-112 69-87 (93)
140 1sd4_A Penicillinase repressor 36.4 27 0.00091 19.9 2.5 18 94-111 107-124 (126)
141 2j7a_C Cytochrome C quinol deh 36.3 5.1 0.00018 24.8 -0.8 15 16-30 109-123 (159)
142 2je2_A Cytochrome P460; heme P 35.9 4.9 0.00017 25.9 -0.9 10 21-30 135-144 (186)
143 3r8n_M 30S ribosomal protein S 35.8 23 0.00078 20.9 2.1 16 94-109 46-61 (114)
144 2k3v_A Tetraheme cytochrome C- 35.4 11 0.00039 20.6 0.7 10 21-30 33-42 (86)
145 1rwj_A Cytochrome C family pro 34.7 12 0.0004 20.7 0.6 13 16-28 52-65 (82)
146 1b0n_A Protein (SINR protein); 34.5 20 0.00068 19.9 1.7 19 93-111 88-106 (111)
147 1xv3_A Penaeidin-4D, PEN-4D; a 33.6 15 0.00051 18.1 0.8 8 23-30 23-30 (47)
148 1m1q_A Small tetraheme cytochr 32.6 11 0.00037 20.9 0.3 10 22-31 57-66 (91)
149 3j20_O 30S ribosomal protein S 31.9 32 0.0011 21.3 2.3 17 93-109 52-68 (148)
150 1q90_A Apocytochrome F; membra 31.4 5.3 0.00018 27.3 -1.3 8 22-29 20-27 (292)
151 1al0_B Scaffolding protein GPB 30.8 13 0.00046 21.8 0.5 20 9-28 64-85 (120)
152 1m0f_B GPB, scaffolding protei 30.7 25 0.00085 18.5 1.4 19 10-28 13-33 (68)
153 1d4d_A Flavocytochrome C fumar 30.5 14 0.0005 27.4 0.7 9 22-30 15-23 (572)
154 3iz6_M 40S ribosomal protein S 29.4 40 0.0014 20.9 2.5 16 94-109 58-73 (152)
155 3h33_A Cytochrome C7, cytochro 29.4 7.6 0.00026 21.2 -0.7 15 15-29 42-57 (75)
156 2xzm_M RPS18E; ribosome, trans 29.0 41 0.0014 20.9 2.5 17 93-109 59-75 (155)
157 3h4n_A Cytochrome C7, cytochro 29.0 13 0.00044 19.8 0.2 8 22-29 27-34 (72)
158 1qo8_A Flavocytochrome C3 fuma 28.8 24 0.00082 26.1 1.6 7 22-28 35-41 (566)
159 4fs3_A Enoyl-[acyl-carrier-pro 28.6 42 0.0014 21.9 2.7 19 91-109 217-235 (256)
160 2vqe_M 30S ribosomal protein S 28.3 41 0.0014 20.2 2.3 16 94-109 47-62 (126)
161 3ubr_A Cytochrome C-552; DECA- 28.0 16 0.00056 26.7 0.6 8 22-29 167-174 (439)
162 1svd_M Ribulose bisphosphate c 28.0 95 0.0032 18.1 4.1 21 89-109 16-36 (110)
163 1oah_A Cytochrome C nitrite re 27.9 15 0.00052 27.4 0.4 9 23-31 188-196 (519)
164 2g9w_A Conserved hypothetical 27.6 42 0.0014 19.7 2.4 18 94-111 106-123 (138)
165 1rbl_M Ribulose 1,5 bisphospha 27.6 68 0.0023 18.7 3.2 21 89-109 14-34 (109)
166 3u5c_S 40S ribosomal protein S 27.1 44 0.0015 20.6 2.4 16 94-109 60-75 (146)
167 3gj3_B Nuclear pore complex pr 27.0 26 0.00089 15.8 1.0 9 22-30 23-31 (33)
168 1y0p_A Fumarate reductase flav 26.3 16 0.00053 27.1 0.3 9 22-30 13-21 (571)
169 1ft5_A Cytochrome C554; heme-s 26.1 18 0.00062 23.5 0.5 10 21-30 58-67 (211)
170 3v2d_4 50S ribosomal protein L 25.5 20 0.00068 19.3 0.5 9 21-29 34-42 (71)
171 3bxu_A Cytochrome C3; multihem 25.5 14 0.00048 19.6 -0.1 14 16-29 43-57 (71)
172 3g27_A 82 prophage-derived unc 25.3 8.7 0.0003 22.1 -1.0 10 22-31 53-62 (96)
173 3lqv_P Splicing factor 3B subu 25.0 29 0.00099 16.4 1.0 9 95-103 23-31 (39)
174 1vs6_Z 50S ribosomal protein L 24.5 22 0.00076 19.1 0.6 9 21-29 35-43 (70)
175 2ozy_A Cytochrome C-type prote 24.4 22 0.00075 21.8 0.7 10 20-29 85-94 (163)
176 1wdd_S Ribulose bisphosphate c 24.3 1.2E+02 0.0042 18.2 4.4 22 89-110 15-36 (128)
177 1b4u_A LIGA, LIGB, protocatech 24.1 26 0.00088 21.5 0.9 31 69-105 46-76 (139)
178 2rdz_A Cytochrome C-552; decah 24.0 16 0.00054 26.8 -0.1 9 22-30 182-190 (452)
179 4fgs_A Probable dehydrogenase 23.2 54 0.0019 22.0 2.5 20 90-109 234-253 (273)
180 3lcz_A YCZA, inhibitor of trap 23.0 20 0.00069 18.0 0.2 11 19-29 8-18 (53)
181 4h15_A Short chain alcohol deh 22.7 56 0.0019 21.7 2.5 20 90-109 221-240 (261)
182 1nkw_Y 50S ribosomal protein L 22.7 24 0.00082 19.1 0.5 9 21-29 34-42 (73)
183 3cao_A Cytochrome C3; tetrahem 22.6 20 0.00067 20.4 0.2 9 22-30 58-66 (103)
184 4fjo_A DNA repair protein REV1 22.1 61 0.0021 18.3 2.2 15 96-110 29-43 (97)
185 3vu7_H DNA repair protein REV1 21.7 56 0.0019 19.5 2.1 15 96-110 56-70 (124)
186 3pmq_A Decaheme cytochrome C M 21.6 25 0.00085 27.2 0.6 11 21-31 493-503 (669)
187 4b79_A PA4098, probable short- 21.1 59 0.002 21.5 2.3 20 90-109 203-222 (242)
188 2bx9_A Anti-trap, AT, tryptoph 21.0 24 0.00081 17.8 0.2 11 19-29 8-18 (53)
189 3l9k_W Dynein intermediate cha 21.0 60 0.0021 15.2 1.7 10 95-104 1-10 (38)
190 3ged_A Short-chain dehydrogena 20.8 75 0.0026 20.9 2.8 20 90-109 195-214 (247)
191 2npt_A Dual specificity mitoge 20.7 63 0.0021 18.5 2.0 13 96-108 72-84 (106)
192 2c6a_A Ubiquitin-protein ligas 20.6 42 0.0014 16.5 1.1 10 21-30 28-37 (46)
193 1v33_A DNA primase small subun 20.2 56 0.0019 23.3 2.1 16 94-109 181-196 (366)
194 1gyo_A Cytochrome C3, A dimeri 20.1 24 0.00082 20.4 0.2 9 22-30 51-59 (109)
No 1
>1ccr_A Cytochrome C; electron transport(cytochrome); HET: M3L HEM; 1.50A {Oryza sativa} SCOP: a.3.1.1
Probab=99.96 E-value=1.4e-28 Score=149.73 Aligned_cols=108 Identities=87% Similarity=1.426 Sum_probs=96.1
Q ss_pred CCCCCccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCC
Q 033761 5 DEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYI 84 (112)
Q Consensus 5 ~a~~~~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 84 (112)
.+...+++++|++||.++|++||++++.|....||+|.++..+..+..++|.|+..++..+..|+.++|.++|.++....
T Consensus 5 ~~~~~~~~~~G~~lf~~~C~~CHg~~g~g~~~~gP~L~~~~~r~~~~~~~~~y~~~~~~~~~~~~~~~l~~~i~~~~~~~ 84 (112)
T 1ccr_A 5 SEAPPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTADKNMAVIWEENTLYDYLLNPXKYI 84 (112)
T ss_dssp GGSCCCCHHHHHHHHHHHTTTTCCCSTTCCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHCCBCSHHHHHHHHHCHHHHS
T ss_pred hhcccccHHHHHHHHHhhcHHhCCCCCCCCCCCCCCccccccccccccCCccccHHHHhcCCccCHHHHHHHHhCccccC
Confidence 34567899999999998999999998876667899999998888888888999988888889999999999999987777
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhccC
Q 033761 85 PGTKMVFPGLKKPQDRADLIAYLKQSTA 112 (112)
Q Consensus 85 ~~~~m~~~~~ls~~e~~~l~ayl~~l~~ 112 (112)
+++||||..+||++||++|++||++|++
T Consensus 85 ~g~~m~~~~~ls~~ei~~l~aYl~~l~~ 112 (112)
T 1ccr_A 85 PGTKMVFPGLXKPQERADLISYLKEATS 112 (112)
T ss_dssp TTCCCCCCCCCCHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 8889999888899999999999999874
No 2
>2w9k_A Cytochrome C, cytochrome C555; electron transport, intermembrane space, metal-binding, thioether bond, respiratory chain, trypanosome; HET: M3L HEC; 1.55A {Crithidia fasciculata} PDB: 2yk3_A* 4dy9_A*
Probab=99.95 E-value=7.6e-28 Score=147.00 Aligned_cols=106 Identities=55% Similarity=0.962 Sum_probs=94.5
Q ss_pred CCCccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCCC
Q 033761 7 APPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPG 86 (112)
Q Consensus 7 ~~~~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 86 (112)
...+++++|++||.++|++||++++.|....||+|.++.++..+..+.|.|++.+...++.|+.++|.++|.+|....++
T Consensus 9 ~~~~~~~~G~~lf~~~C~~CH~~~g~g~~~~gP~L~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~l~~~i~~p~~~~~g 88 (114)
T 2w9k_A 9 LPPGDAARGEKLFKGRAAQCHTANQGGANGVGPNLYGLVGRHSGTIEGYAYSKANAESGVVWTPDVLDVYLENPXKFMPG 88 (114)
T ss_dssp CCCCCHHHHHHHHHHHTTTTCCCSTTCCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHCCCBCCHHHHHHHHHCHHHHSTT
T ss_pred CCCccHHHHHHHHHhhchhhCCCCCCCCCCCCCCcccccCccccccccccccHhHHhcCCccCHHHHHHHHHchhhhcCC
Confidence 44688999999999899999999887666789999999888888888888988888889999999999999998776778
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhccC
Q 033761 87 TKMVFPGLKKPQDRADLIAYLKQSTA 112 (112)
Q Consensus 87 ~~m~~~~~ls~~e~~~l~ayl~~l~~ 112 (112)
+.|||...||++|+++|++||++|+.
T Consensus 89 ~~Mp~~~~ls~~ei~~l~aYl~sl~~ 114 (114)
T 2w9k_A 89 TKMSFAGMKKPQERADVIAYLETLKG 114 (114)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHTCCC
T ss_pred CcccccccCCHHHHHHHHHHHHHccC
Confidence 88998888999999999999999863
No 3
>1ycc_A Cytochrome C; electron transport (cytochrome); HET: M3L HEM; 1.23A {Saccharomyces cerevisiae} SCOP: a.3.1.1 PDB: 1kyo_W* 3cx5_W* 2gb8_B* 2pcc_B* 2b12_B* 2jti_B* 2b11_B* 2b0z_B* 2bcn_B* 1u74_B* 2b10_B* 1yfc_A* 1yic_A* 1nmi_A* 2hv4_A* 2orl_A* 3tyi_A* 1crh_A* 2ycc_A* 1csw_A* ...
Probab=99.95 E-value=1.1e-27 Score=144.95 Aligned_cols=106 Identities=58% Similarity=1.038 Sum_probs=93.2
Q ss_pred CCCccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCCC
Q 033761 7 APPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPG 86 (112)
Q Consensus 7 ~~~~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 86 (112)
...+++++|+.||.++|++||++++.|....||+|.++..+..+..++|.++..+...+..|+.++|.+||.+|....++
T Consensus 3 ~~~~~~~~G~~lf~~~C~~CH~~~g~g~~~~gP~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~ 82 (108)
T 1ycc_A 3 FKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPXKYIPG 82 (108)
T ss_dssp CCCCCHHHHHHHHHHHTTTTCCCSTTCCCCSSCCCTTCTTSBTTCSTTCCCCHHHHHHCCBCCHHHHHHHHHCHHHHSTT
T ss_pred cccccHHHHHHHHHhhCcccCCCCCCCCCCCCCChhhhccccccccccccccHHHHhcCcccCHHHHHHHHHChhhhcCC
Confidence 34678999999999889999999887667789999999888877778888888888888899999999999998877778
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhccC
Q 033761 87 TKMVFPGLKKPQDRADLIAYLKQSTA 112 (112)
Q Consensus 87 ~~m~~~~~ls~~e~~~l~ayl~~l~~ 112 (112)
+.|||..++|++|+++|++||++|++
T Consensus 83 ~~Mp~~~l~s~~ei~~l~aYl~sl~e 108 (108)
T 1ycc_A 83 TKMAFGGLKKEKDRNDLITYLKKACE 108 (108)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_pred cccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 88998777799999999999999864
No 4
>1i54_A Cytochrome C; zinc-porphyrin, mixed-metal, electron transport; HET: HEM ZNH; 1.50A {Thunnus thynnus} SCOP: a.3.1.1 PDB: 1i55_A* 1lfm_A* 5cyt_R* 3cyt_O* 1cyc_A* 2aiu_A* 2b4z_A* 2ybb_Y* 1akk_A* 1fi7_A* 1fi9_A* 1giw_A* 1i5t_A* 1lc1_A* 1lc2_A* 1m60_A* 1ocd_A* 1u75_B* 2frc_A* 2giw_A* ...
Probab=99.95 E-value=2.3e-27 Score=142.25 Aligned_cols=103 Identities=59% Similarity=1.074 Sum_probs=90.5
Q ss_pred ccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCCCCCC
Q 033761 10 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKM 89 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m 89 (112)
+++++|++||.++|++||++++.|....||+|.++..+..+..++|.++..+...+..|+.++|..||.++....+++.|
T Consensus 1 gd~~~G~~lf~~~C~~CH~~~g~g~~~~gP~L~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~M 80 (103)
T 1i54_A 1 GDVAKGKKTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNNDTLMEYLENPKKYIPGTKM 80 (103)
T ss_dssp CCHHHHHHHHHHHTTTTCCCSTTCCCCSSCCCTTCTTSBTTCCTTCCCCHHHHHSCCBCSHHHHHHHHHCHHHHSTTCSC
T ss_pred CcHHHHHHHHHHhhHHhCCCCCCCCCCCCCCcccccCccccccCCccccHHHHhCCceECHHHHHHHHhCccccCCCCcC
Confidence 46889999999899999999987667789999999888877778888888888888999999999999998777777889
Q ss_pred CCCCCCCHHHHHHHHHHHHhccC
Q 033761 90 VFPGLKKPQDRADLIAYLKQSTA 112 (112)
Q Consensus 90 ~~~~~ls~~e~~~l~ayl~~l~~ 112 (112)
||..+++++|+++|++||++|++
T Consensus 81 p~~~l~~~~ei~~l~aYl~sl~~ 103 (103)
T 1i54_A 81 IFAGIKKKGERQDLVAYLKSATS 103 (103)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHCC
T ss_pred CccCCCCHHHHHHHHHHHHHhcC
Confidence 97665569999999999999874
No 5
>3m97_X Cytochrome C-552, cytochrome C552; electron transport chain (cytochrome), electron transfer, P. denitrificans, electron donor; HET: HEC; 1.33A {Paracoccus denitrificans} PDB: 1c7m_A* 1i6d_A* 1i6e_A* 1ql3_A* 1ql4_A*
Probab=99.95 E-value=1.3e-27 Score=151.00 Aligned_cols=100 Identities=42% Similarity=0.805 Sum_probs=91.8
Q ss_pred CccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCCCCC
Q 033761 9 PGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTK 88 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 88 (112)
.+++.+|+.|| ++|++||+++ +....||+|.++.++..+..++|.|++.++..++.|+.++|.+||.+|....+++.
T Consensus 41 ~~d~~~G~~lf-~~C~~CH~~~--~~~~~gP~L~gv~~r~~~~~~g~~Ys~al~~~g~~w~~e~L~~~I~~P~~~~pgt~ 117 (140)
T 3m97_X 41 SADPAAGEKVF-GKCKACHKLD--GNDGVGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPEALQEFLTNPKAVVKGTK 117 (140)
T ss_dssp TCCHHHHHHHG-GGTTTTCCSS--SCCSSSCCCTTCTTCBTTCSTTCCCCHHHHHHCSBCCHHHHHHHHHCHHHHSTTCS
T ss_pred ccCHHHHHHHH-HhhhhhcCCC--CCCCcCCCccccccccccccccccccHhhhhccccCCHHHHHHHHhcccccCCCCC
Confidence 57889999999 6999999983 34578999999999999999999999999999999999999999999998889999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcc
Q 033761 89 MVFPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 89 m~~~~~ls~~e~~~l~ayl~~l~ 111 (112)
|||.++++++|+++|++||++|+
T Consensus 118 Mp~~gllsdedi~aLiAYL~sLk 140 (140)
T 3m97_X 118 MAFAGLPKIEDRANLIAYLEGQQ 140 (140)
T ss_dssp CCCCCCCSHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcC
Confidence 99988899999999999999985
No 6
>1hro_A Cytochrome C2; electron transport, photosynthesis, heme; HET: HEM; 2.20A {Rhodopila globiformis} SCOP: a.3.1.1
Probab=99.94 E-value=2.7e-27 Score=142.84 Aligned_cols=104 Identities=48% Similarity=0.947 Sum_probs=91.0
Q ss_pred CCCccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCCC
Q 033761 7 APPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPG 86 (112)
Q Consensus 7 ~~~~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 86 (112)
...+++++|++||.++|++||++++. ....||+|.++..+..+..++|.+++.+...+..|+.++|..+|.+|....++
T Consensus 3 ~~~~~~~~G~~lf~~~C~~CH~~~g~-~~~~gP~L~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~g 81 (106)
T 1hro_A 3 APPGDPVEGKHLFHTICITCHTDIKG-ANKVGPSLYGVVGRHSGIEPGYNYSEANIKSGIVWTPDVLFKYIEHPQKIVPG 81 (106)
T ss_dssp CCCCCHHHHHHHHTTTGGGTCCSSTT-CBSSSCCCTTCTTCBTTCSTTBCCCHHHHHHCCBCCHHHHHHHHHCHHHHSTT
T ss_pred cccccHHHHHHHHHcchhhhCCCCCC-CCCCCCCCCCccccccccCCCccccHHHHhcCcccCHHHHHHHHhCccccCCC
Confidence 45689999999999899999999865 35679999999888877778888888888888899999999999998777778
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcc
Q 033761 87 TKMVFPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 87 ~~m~~~~~ls~~e~~~l~ayl~~l~ 111 (112)
+.|||..+++++|+++|++||++|+
T Consensus 82 ~~Mp~~~~~~~~ei~~l~aYl~sl~ 106 (106)
T 1hro_A 82 TKMGYPGQPDPQKRADIIAYLETLK 106 (106)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcC
Confidence 8899887778999999999999985
No 7
>1co6_A Protein (cytochrome C2); electron transport(heme protein); HET: HEM; 1.60A {Blastochloris viridis} SCOP: a.3.1.1 PDB: 1cry_A* 1io3_A*
Probab=99.94 E-value=5.6e-27 Score=141.69 Aligned_cols=102 Identities=52% Similarity=0.957 Sum_probs=90.9
Q ss_pred ccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCCCCCC
Q 033761 10 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKM 89 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m 89 (112)
+++++|++||.+ |++||++++.+....||+|.++..+..+..++|.|+..+...++.|+.++|..||.++....+++.|
T Consensus 1 gd~~~G~~lf~~-C~~CH~~~g~g~~~~gP~L~~~~~r~~~~~~~~~y~~~~~~~~~~~~~~~l~~~i~~~~~~~~g~~M 79 (107)
T 1co6_A 1 QDAASGEQVFKQ-CLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTEEVFREYIRDPKAKIPGTKM 79 (107)
T ss_dssp CCHHHHHHHHHH-HHTTCCCSTTCCCCSSCCCTTCTTCBTTCSTTCCCCHHHHTSCCBCCHHHHHHHHHCHHHHSTTCSC
T ss_pred CCHHHHHHHHHH-hHhhCCCCCCCCCCCCCCcccccCccccccCcccchHHHHhcCceecHHHHHHHHHCccccCCCCCC
Confidence 468899999998 9999999887667789999999888888888899999998889999999999999998777788889
Q ss_pred CCCCCCCHHHHHHHHHHHHhccC
Q 033761 90 VFPGLKKPQDRADLIAYLKQSTA 112 (112)
Q Consensus 90 ~~~~~ls~~e~~~l~ayl~~l~~ 112 (112)
||..++|++|+++|++||++|+.
T Consensus 80 p~~~l~s~~ei~~l~aYl~sl~~ 102 (107)
T 1co6_A 80 IFAGVKDEQKVSDLIAYIKQFNA 102 (107)
T ss_dssp CCCCCCCHHHHHHHHHHHHTBCT
T ss_pred CCCCCCCHHHHHHHHHHHHHccc
Confidence 97777799999999999999863
No 8
>1cxc_A Cytochrome C2; electron transport (cytochrome); HET: HEM; 1.60A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1cxa_A* 1l9b_C* 1l9j_C* 2cxb_A*
Probab=99.94 E-value=5e-27 Score=145.73 Aligned_cols=102 Identities=35% Similarity=0.751 Sum_probs=88.7
Q ss_pred CccHHHHHHHHHhcCCccccCcC-------CCCCCCCCCcccccCCccccCCCC-CCchhh---hcccccccHHHHHHHH
Q 033761 9 PGNAKAGEKIFKTKCAQCHTVEK-------GAGHKQGPNLNGLFGRQSGTTPGY-SYSAAN---KNMAVNWEEKTLYDYL 77 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~-------~g~~~~gP~l~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~l~~~l 77 (112)
.+++++|++||+ +|++||++.+ .+.+.+||+|.++.++..+..++| .|+..+ ...++.|+.++|..||
T Consensus 2 ~gd~~~G~~~F~-~C~~CH~v~~~~g~~~~g~~~~vGP~L~gv~~r~~~~~~g~~~ys~~l~~~~~~g~~w~~~~l~~~l 80 (124)
T 1cxc_A 2 EGDPEAGAKAFN-QCQTCHVIVDDSGTTIAGRNAKTGPNLYGVVGRTAGTQADFKGYGEGMKEAGAKGLAWDEEHFVQYV 80 (124)
T ss_dssp CSCHHHHHHHGG-GGGGTCCEECTTSCEEECCSCCSSCCCTTCTTCBTTCCTTCCCCCHHHHHHHHTTCBCCHHHHHHHH
T ss_pred CCCHHHHHHHHH-hhhhhcCCCCccccccccCCCCCCCCCcCccCCcccccccHHHhhHHHHhhhhcCccCCHHHHHHHH
Confidence 468999999995 8999999875 234678999999999998888888 888887 4578899999999999
Q ss_pred hCCCCCCCC--------CCCCCCCCCCHHHHHHHHHHHHhccC
Q 033761 78 LNPKKYIPG--------TKMVFPGLKKPQDRADLIAYLKQSTA 112 (112)
Q Consensus 78 ~~~~~~~~~--------~~m~~~~~ls~~e~~~l~ayl~~l~~ 112 (112)
.+|....++ +.|||. +++++|+++|++||++|+.
T Consensus 81 ~~P~~~~pg~~~d~~a~t~M~~~-l~~~~d~~dliaYL~sl~~ 122 (124)
T 1cxc_A 81 QDPTKFLKEYTGDAKAKGKMTFK-LKKEADAHNIWAYLQQVAV 122 (124)
T ss_dssp HCHHHHHHHHHSCTTCCCSCCCC-CCCHHHHHHHHHHHHHHCC
T ss_pred hChHhhCCCcccCcccCCCCCCc-cCCHHHHHHHHHHHHHcCC
Confidence 999887787 899988 7789999999999999863
No 9
>1vyd_A Cytochrome C2; electron transport, redox, mutant; HET: HEM; 2.3A {Rhodobacter capsulatus} SCOP: a.3.1.1 PDB: 1c2r_A*
Probab=99.94 E-value=3.1e-27 Score=145.16 Aligned_cols=99 Identities=34% Similarity=0.686 Sum_probs=86.1
Q ss_pred ccHHHHHHHHHhcCCccccCcCC------CCCCCCCCcccccCCccccCCCCCCchhhh---cccccccHHHHHHHHhCC
Q 033761 10 GNAKAGEKIFKTKCAQCHTVEKG------AGHKQGPNLNGLFGRQSGTTPGYSYSAANK---NMAVNWEEKTLYDYLLNP 80 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~------g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~l~~~ 80 (112)
+++++|++||+ +|++||++++. +...+||+|.++.+|..+..++|.|++++. ..++.|+.++|.+||.+|
T Consensus 1 gd~~~G~~~F~-~C~~CH~v~~~~g~~~~~~~~~GP~L~gv~gr~~~~~~gf~ys~~l~~~~~~g~~w~~~~L~~~l~~P 79 (116)
T 1vyd_A 1 GDAAKGEKEFN-KCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEEDIATYVKDP 79 (116)
T ss_dssp CCHHHHHHHGG-GTTTTCCEECTTSCEEECCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHHHTTCBCCHHHHHHHHHCH
T ss_pred CCHHHHHHHHH-cchhhCCCCCCCCccccccCccCcccccccccccccccccccCHHHHhhcccCccCCHHHHHHHHHCH
Confidence 47899999998 89999999854 456789999999999999999999999984 678899999999999999
Q ss_pred CCCCCC--------CCCCCCCCCCHHHHHHHHHHHHhccC
Q 033761 81 KKYIPG--------TKMVFPGLKKPQDRADLIAYLKQSTA 112 (112)
Q Consensus 81 ~~~~~~--------~~m~~~~~ls~~e~~~l~ayl~~l~~ 112 (112)
....++ +.|||. |+++|. +|++||++|++
T Consensus 80 ~~~~pg~~~d~~~~t~Mpf~--l~~~~~-dliaYL~sl~~ 116 (116)
T 1vyd_A 80 GAFLKEKLDDKKAKTEMAFK--LAKGGE-DVAAYLASVVK 116 (116)
T ss_dssp HHHHHHHHTCTTCCCSCCCC--CSSCHH-HHHHHHHHTCC
T ss_pred HHhCCCcccCccccCCCCCC--CCCHHH-HHHHHHHHhcC
Confidence 888787 899976 554444 99999999975
No 10
>2bh4_X Cytochrome C-550; C-type cytochrome, heme, electron transfer, axial ligand, pyrrolidone carboxylic acid; HET: HEC; 1.55A {Paracoccus versutus} PDB: 2bh5_X* 2bgv_X* 1cot_A*
Probab=99.94 E-value=3.7e-27 Score=148.09 Aligned_cols=99 Identities=36% Similarity=0.712 Sum_probs=88.9
Q ss_pred CccHHHHHHHHHhcCCccccCcCC------CCCCCCCCcccccCCccccCCCCCCchhh-----hcccccccHHHHHHHH
Q 033761 9 PGNAKAGEKIFKTKCAQCHTVEKG------AGHKQGPNLNGLFGRQSGTTPGYSYSAAN-----KNMAVNWEEKTLYDYL 77 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~~------g~~~~gP~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~l 77 (112)
.+++++|++||++ |++||++++. +.+.+||+|.++.++..+..++|.|++.+ ...++.|+.++|..||
T Consensus 2 ~gd~~~G~~lF~~-C~~CH~v~~~~g~~~~~~~~~GP~L~gv~gr~~~~~~gf~ys~~l~~~~~~~~g~~w~~~~L~~~l 80 (134)
T 2bh4_X 2 EGDAAKGEKEFNK-CKACHMVQAPDGTDIVKGGKTGPNLYGVVGRKIASVEGFKYGDGILEVAEKNPDMVWSEADLIEYV 80 (134)
T ss_dssp CCCHHHHHHHGGG-TTTTCCEECTTSCEEECCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHHHHCTTCBCCHHHHHHHH
T ss_pred CCcHHHHHHHHHH-hHhhcCCcCCCcccccccCCcCCCcccccCccccccccccccHHHhhhhccccCccCCHHHHHHHH
Confidence 4789999999986 9999999865 45788999999999999999999999888 7789999999999999
Q ss_pred hCCCCCCCC--------CCCCCCCCCCHHHHHHHHHHHHhcc
Q 033761 78 LNPKKYIPG--------TKMVFPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 78 ~~~~~~~~~--------~~m~~~~~ls~~e~~~l~ayl~~l~ 111 (112)
.+|....++ +.|||. |+++|+ +|++||++|+
T Consensus 81 ~~P~~~~pg~~~d~~a~t~Mpf~--Ls~~e~-dliaYL~sl~ 119 (134)
T 2bh4_X 81 TDPKPWLVEKTGDSAAKTKKTFK--LGKNQA-DVVAFLAQHS 119 (134)
T ss_dssp HCHHHHHHHHHCCTTCCCSCCCC--CCSCHH-HHHHHHHHTC
T ss_pred hCHHhcCCCcccCccccCCCCCC--CChHHH-HHHHHHHHcC
Confidence 999877777 899977 889999 9999999986
No 11
>3c2c_A Cytochrome C2; electron transport protein (cytochrome); HET: HEM; 1.68A {Rhodospirillum rubrum} SCOP: a.3.1.1 PDB: 2c2c_A*
Probab=99.93 E-value=1.7e-26 Score=140.71 Aligned_cols=100 Identities=41% Similarity=0.762 Sum_probs=85.7
Q ss_pred ccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhh---hcccccccHHHHHHHHhCCCCCCCC
Q 033761 10 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN---KNMAVNWEEKTLYDYLLNPKKYIPG 86 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~ 86 (112)
+++++|++||+ +|++||++++.+....||+|.++.++..++.++|.|++.+ +..++.|+.++|.+||.+|....++
T Consensus 2 gd~~~G~~lf~-~Ca~CH~~~g~g~~~~gP~L~gi~~r~~~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~i~~p~~~~~g 80 (112)
T 3c2c_A 2 GDAAAGEKVSK-KCLACHTFDQGGANKVGPNLFGVFENTAAHKDNYAYSESYTEMKAKGLTWTEANLAAYVKNPKAFVLE 80 (112)
T ss_dssp CCHHHHHHHGG-GGTTTCCCSTTCCCSSSCCCTTCTTSBSSCCTTSCCCHHHHHHHHTTCBCCHHHHHHHHHCHHHHHHH
T ss_pred ccHHHHHHHHH-hHHhhCCCCCCCCCCCCCCcccccCCcccccccccccHHHHhccccCcccCHHHHHHHHhChhhhcCC
Confidence 57899999998 9999999987766778999999999998999999998877 4578899999999999987643333
Q ss_pred --------CCCCCCCCCCHHHHHHHHHHHHhcc
Q 033761 87 --------TKMVFPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 87 --------~~m~~~~~ls~~e~~~l~ayl~~l~ 111 (112)
+.|||. +++++||++|++||++|+
T Consensus 81 ~~~~~~~~~~Mp~~-l~~~~di~~l~aYl~sl~ 112 (112)
T 3c2c_A 81 KSGDPKAKSKMTFK-LTKDDEIENVIAYLKTLK 112 (112)
T ss_dssp HHCCTTCCCSCCCC-CCCHHHHHHHHHHHTTCC
T ss_pred CcCCccccCCCCCc-CCCHHHHHHHHHHHHHcC
Confidence 678876 666899999999999985
No 12
>155c_A Cytochrome C550; electron transport; HET: HEM; 2.50A {Paracoccus denitrificans} SCOP: a.3.1.1
Probab=99.93 E-value=3.4e-26 Score=143.82 Aligned_cols=99 Identities=36% Similarity=0.731 Sum_probs=88.2
Q ss_pred CccHHHHHHHHHhcCCccccCcCC-----CCCCCCCCcccccCCccccCCCCCCchhh-----hcccccccHHHHHHHHh
Q 033761 9 PGNAKAGEKIFKTKCAQCHTVEKG-----AGHKQGPNLNGLFGRQSGTTPGYSYSAAN-----KNMAVNWEEKTLYDYLL 78 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~~-----g~~~~gP~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~l~ 78 (112)
.+++++|++||++ |++||++++. +.+.+||+|.++.++..+..++|.|++.+ ...++.|+.++|..||.
T Consensus 3 ~gd~~~G~~lF~~-CaaCH~~~~~~g~~~~~~~~GP~L~gv~gr~~~~~~gf~ys~~l~~~~~~~~~~~w~~~~L~~~i~ 81 (135)
T 155c_A 3 EGDAAKGEKEFNK-CKACHMIQAPDGTDIKGGKTGPNLYGVVGRKIASEEGFKYGEGILEVAEKNPDLTWTEANLIEYVT 81 (135)
T ss_dssp CCCSHHHHHHHTT-TTTTEECCCSSSCSSCCCSSEEECSSCTTSCTTCSSSSCCCHHHHHHHHHCSCCCCCSHHHHHHHH
T ss_pred ccCHHHHHHHHHH-HHHhcCCCCCCCccccCCCCCCCcccccCccccccccccchHHHhhhhhccccccCCHHHHHHHHh
Confidence 4688999999986 9999999865 45678999999999999999999999988 77889999999999999
Q ss_pred CCCCCCCC--------CCCCCCCCCCHHHHHHHHHHHHhcc
Q 033761 79 NPKKYIPG--------TKMVFPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 79 ~~~~~~~~--------~~m~~~~~ls~~e~~~l~ayl~~l~ 111 (112)
+|....++ +.|||. |+++|+ +|++||++|+
T Consensus 82 ~P~~~~pg~~~~~~~~t~Mpf~--L~~~e~-dliAYL~sl~ 119 (135)
T 155c_A 82 DPKPLVKKMTDDKGAKTKMTFK--MGKNQA-DVVAFLAQDD 119 (135)
T ss_dssp SSTTTTTTTSCCSCCCCSCCCC--CCSCHH-HHHHHHHHHS
T ss_pred CHHhhCCCccccccccCCCCCC--CCCHHH-HHHHHHHhcC
Confidence 99998888 899976 667777 9999999986
No 13
>1qn2_A Cytochrome CH; electron transport; HET: HEC; 2.01A {Methylobacterium extorquens} SCOP: a.3.1.1
Probab=99.93 E-value=9.4e-26 Score=134.79 Aligned_cols=98 Identities=46% Similarity=0.923 Sum_probs=85.8
Q ss_pred ccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCcccc-CCCCCCchhhhcccccccHHHHHHHHhCCCCCCCCCC
Q 033761 10 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGT-TPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTK 88 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 88 (112)
+++++|++||+ +|++||++++ ...||+|.++.++..+. .++|.|++++...++.|+.++|..||.+|....+++.
T Consensus 2 gd~~~G~~l~~-~C~~CH~~~~---~~~gP~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~g~~ 77 (100)
T 1qn2_A 2 GDAAAGEKAFA-PCKACHNFEK---NGVGPTLKGVVGAKAGEGADGYAFSDALKKSGLTWDQADLKQWLADPKKKVPGTK 77 (100)
T ss_dssp CCHHHHHHHTG-GGGGTCCSSS---CSSSCCCTTCTTSBTTTCTTTCCCCHHHHHHCCBCCHHHHHHHHHCHHHHSTTCS
T ss_pred ccHHHHHHHHH-HHHHhcCCCC---CCCCCCcccccCccccccCCCccccHHHHhcCcccCHHHHHHHHhCcccccCCCC
Confidence 67899999997 5999999873 46799999998887776 6788888899888999999999999999887777888
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcc
Q 033761 89 MVFPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 89 m~~~~~ls~~e~~~l~ayl~~l~ 111 (112)
|||..++|++|+++|++||++|+
T Consensus 78 Mp~~~~~s~~di~~l~aYl~sl~ 100 (100)
T 1qn2_A 78 MVFPGISDPKKVDDIIAYLKTKS 100 (100)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCHHHHHHHHHHHHhcC
Confidence 99878889999999999999985
No 14
>1c2n_A Cytochrome C2; electron transport; HET: HEC; NMR {Rhodobacter capsulatus} SCOP: a.3.1.1
Probab=99.92 E-value=1e-25 Score=141.92 Aligned_cols=99 Identities=34% Similarity=0.678 Sum_probs=86.8
Q ss_pred ccHHHHHHHHHhcCCccccCcCC------CCCCCCCCcccccCCccccCCCCCCchhhh---cccccccHHHHHHHHhCC
Q 033761 10 GNAKAGEKIFKTKCAQCHTVEKG------AGHKQGPNLNGLFGRQSGTTPGYSYSAANK---NMAVNWEEKTLYDYLLNP 80 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~------g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~l~~~ 80 (112)
+++++|+++|. +|++||++++. +...+||+|.++.++..+..++|.|++.+. +.++.|+.++|.+||.+|
T Consensus 22 ~~~~~G~~lf~-~C~~CH~~~~~~G~~~~~~~~~gP~L~~i~~r~~g~~~~~~ys~~l~~~~~~g~~w~~~~l~~~i~~p 100 (137)
T 1c2n_A 22 GDAAKGEKEFN-KCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEEDIATYVKDP 100 (137)
T ss_dssp CCHHHHHHHHH-HHTTTCCBCCTTSCCSBCCCCSSCCCTTCTTSCSSCCSSCCCCHHHHHHHHTTCCCCHHHHHHHTTST
T ss_pred cChHHHHHHHH-hHHhhCCCCCCCccccccccCCCcchhcccccccCCCCcccccHHHHhhhhcCccCCHHHHHHHHhCH
Confidence 78999999998 99999999854 245689999999999999999999988874 678999999999999999
Q ss_pred CCCCCC--------CCCCCCCCCCHHHHHHHHHHHHhccC
Q 033761 81 KKYIPG--------TKMVFPGLKKPQDRADLIAYLKQSTA 112 (112)
Q Consensus 81 ~~~~~~--------~~m~~~~~ls~~e~~~l~ayl~~l~~ 112 (112)
....++ +.|||. |+++|+ +|++||++|++
T Consensus 101 ~~~~~g~~~~~~~~~~Mp~~--Lsd~e~-~liaYL~sl~~ 137 (137)
T 1c2n_A 101 GAFLKEKLDDKKAKTGMAFK--LAKGGE-DVAAYLASVVK 137 (137)
T ss_dssp THHHHHHHTCSCCCCSCCCC--CSSSHH-HHHHHHHHHCC
T ss_pred HhhCCCcccccCcCCCCCCC--CCcHHH-HHHHHHHHccC
Confidence 876665 789975 899999 99999999875
No 15
>1jdl_A C552, cytochrome C2, ISO-2; alpha helix, electron transport; HET: HEM; 1.70A {Rhodospirillum centenum} SCOP: a.3.1.1
Probab=99.92 E-value=2.9e-25 Score=136.74 Aligned_cols=102 Identities=41% Similarity=0.811 Sum_probs=84.8
Q ss_pred CccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhh---hcccccccHHHHHHHHhCCCCCCC
Q 033761 9 PGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN---KNMAVNWEEKTLYDYLLNPKKYIP 85 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~ 85 (112)
.+++++|+.|| ++|++||++++.+...+||+|.++..+..+..+.|.|+..+ +..++.|+.++|..||.+|....+
T Consensus 2 ~gd~~~G~~lf-~~C~~CH~~~~~~~~~~gP~L~gi~~r~~~~~~~~~y~~~~~~~~~~g~~~~~~~l~~~i~~p~~~~~ 80 (121)
T 1jdl_A 2 DGDPAKGEAVF-KKCMACHRVGPDAKNLVGPALTGVIDRQAGTAPGFNYSAINHAAGEAGLHWTPENIIAYLPDPNAFLR 80 (121)
T ss_dssp -CCHHHHHHHG-GGTTTTCCCSTTCCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHHHTTCBCCHHHHHHHTTCHHHHHH
T ss_pred CCCHHHHHHHH-hhhhhhCCCCCCCCCCCCCCchhhcCCccccccCccccHHHHhhhhcCCccCHHHHHHHHhCcccccC
Confidence 46889999999 69999999987666778999999999888888888888776 456788999999999998765444
Q ss_pred C--------------CCCCCCCCCCHHHHHHHHHHHHhccC
Q 033761 86 G--------------TKMVFPGLKKPQDRADLIAYLKQSTA 112 (112)
Q Consensus 86 ~--------------~~m~~~~~ls~~e~~~l~ayl~~l~~ 112 (112)
+ +.|||. +++++|+++|++||++|+.
T Consensus 81 g~~~~~~~~~~~~~~~~Mp~~-l~~~~ei~~l~aYL~sl~~ 120 (121)
T 1jdl_A 81 KFLADAGHAEQAKGSTKMVFK-LPDEQERKDVVAYLKQFSP 120 (121)
T ss_dssp HHHHHTTCGGGGSSCCSCCCC-CCCHHHHHHHHHHHGGGCC
T ss_pred CcccccchhhcccccccCCcc-CCCHHHHHHHHHHHHHccc
Confidence 3 688976 4445999999999999863
No 16
>1i8o_A Cytochrome C2; electron transport, heme, ammonia, oxidized; HET: HEC; 1.15A {Rhodopseudomonas palustris} SCOP: a.3.1.1 PDB: 1fj0_A* 1hh7_A* 1i8p_A*
Probab=99.90 E-value=4.6e-24 Score=130.40 Aligned_cols=96 Identities=38% Similarity=0.769 Sum_probs=81.1
Q ss_pred ccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhh---cccccccHHHHHHHHhCCCCCCCC
Q 033761 10 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANK---NMAVNWEEKTLYDYLLNPKKYIPG 86 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~ 86 (112)
+++++|+.||+ .|++||+. +...+||+|.++.++..+..+++.|+..+. ..++.|+.++|.+||.+|....++
T Consensus 1 gd~~~G~~lf~-~C~~CH~~---~~~~~GP~l~gi~~r~~~~~~~~~y~~~~~~~~~~g~~w~~~~L~~~l~~p~~~~~g 76 (114)
T 1i8o_A 1 EDAKAGEAVFK-QCMTCHRA---DKNMVGPALAGVVGRKAGTAAGFTYSPLNHNSGEAGLVWTADNIVPYLADPNAFLKK 76 (114)
T ss_dssp CCHHHHHHHHH-HHTTTCCS---SSCSSSCCCTTCTTSBTTCCTTCCCCHHHHHHHHTTCBCCHHHHHHHHHCHHHHHHH
T ss_pred CcHHHHHHHHH-hHHhhCCC---cccCcCcccccccccccccccchhhhHHHhhccccCccccHHHHHHHHHCHHhhCCC
Confidence 46889999996 99999993 235679999999999988888888887773 577899999999999998765555
Q ss_pred --------------CCCCCCCCCCH-HHHHHHHHHHHhcc
Q 033761 87 --------------TKMVFPGLKKP-QDRADLIAYLKQST 111 (112)
Q Consensus 87 --------------~~m~~~~~ls~-~e~~~l~ayl~~l~ 111 (112)
+.|||. |++ +||++|++||++|+
T Consensus 77 ~~~d~~~~~~~~~~~~Mp~~--l~~~~d~~~liaYL~sl~ 114 (114)
T 1i8o_A 77 FLTEKGKADQAVGVTKMTFK--LANEQQRKDVVAYLATLK 114 (114)
T ss_dssp HHHHTTCGGGCCSCCSSCCC--CCCHHHHHHHHHHHHTTC
T ss_pred CcccccccccccccCcCCCC--CCCHHHHHHHHHHHHhcC
Confidence 789976 555 99999999999985
No 17
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Probab=99.84 E-value=1e-20 Score=112.13 Aligned_cols=92 Identities=24% Similarity=0.447 Sum_probs=70.7
Q ss_pred CccHHHHHHHHHhc-CCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCCC-
Q 033761 9 PGNAKAGEKIFKTK-CAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPG- 86 (112)
Q Consensus 9 ~~~~~~G~~lf~~~-C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~- 86 (112)
.+++++|+.||.++ |++||+.++. +..||.|.++.++......+ .+..|+.++|.++|.++....+.
T Consensus 3 ~~~~~~G~~l~~~~~C~~CHg~~g~--~~~gp~l~~~~~~~~~~~~~---------~~~~~~~~~l~~~i~~~~~~~~~g 71 (99)
T 1w2l_A 3 MPLAELGARLYREKACFSCHSIDGS--RLVGPSFKGLYGSTRTFEDG---------TTAVADENYLRESILQPGAKVVQG 71 (99)
T ss_dssp CCHHHHHHHHHHHTSGGGTCCSSSC--CSSSCCSTTCTTCEEEBTTS---------CEEECCHHHHHHHHHSTTSSCBTT
T ss_pred cccHHHHHHHHhhCChhhcCCCCCC--CCCCCCcccccccccccCCC---------CcccCCHHHHHHHHHccCcccccc
Confidence 46789999999998 9999998753 45689998876654322211 23468899999999998865432
Q ss_pred --CCCC-CCCCCCHHHHHHHHHHHHhcc
Q 033761 87 --TKMV-FPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 87 --~~m~-~~~~ls~~e~~~l~ayl~~l~ 111 (112)
..|| |...||++|+++|++||++|+
T Consensus 72 ~~~~Mp~~~~~ls~~ei~~l~~yl~sl~ 99 (99)
T 1w2l_A 72 YPNVMPASYASLSEREVAALIEFIKQQQ 99 (99)
T ss_dssp SCSCCCGGGGGCCHHHHHHHHHHHHTCC
T ss_pred ccccCccccccCCHHHHHHHHHHHHHcC
Confidence 3675 777799999999999999985
No 18
>2c1d_B SOXX; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus pantotrophus}
Probab=99.81 E-value=5.1e-20 Score=115.48 Aligned_cols=86 Identities=28% Similarity=0.488 Sum_probs=66.9
Q ss_pred CCCccHHHHHHHHH----hcCCccccCcCCCC----CCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHh
Q 033761 7 APPGNAKAGEKIFK----TKCAQCHTVEKGAG----HKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLL 78 (112)
Q Consensus 7 ~~~~~~~~G~~lf~----~~C~~CH~~~~~g~----~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 78 (112)
...+++.+|++||. .+|++||+.++.+. +..+|+|.++.. .|+.++|..+|.
T Consensus 21 ~~~~~~~~G~~lf~~~~~~~C~~CH~~~g~g~~~~~g~~gP~L~~~~~--------------------~~~~~~l~~~i~ 80 (137)
T 2c1d_B 21 GAPGNPEEGVRIMTTNALGNCVACHQIGALPDVEFPGTIAPPLDGAGD--------------------RWTEAQLRGIVA 80 (137)
T ss_dssp SSCCCHHHHHHHHTCTTTTCGGGTBCCTTCTTCCSCCCSBCCSTTHHH--------------------HSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhcccccChhhhcCCCCCCCccccccCCCCHhHhhh--------------------ccCHHHHHHHHc
Confidence 34578999999998 78999999887532 356788876533 247889999999
Q ss_pred CCCCCCCCCCCC-CC----------------------CCCCHHHHHHHHHHHHhccC
Q 033761 79 NPKKYIPGTKMV-FP----------------------GLKKPQDRADLIAYLKQSTA 112 (112)
Q Consensus 79 ~~~~~~~~~~m~-~~----------------------~~ls~~e~~~l~ayl~~l~~ 112 (112)
+|....++..|| |. ..||++||++|++||++|++
T Consensus 81 ~p~~~~~~~~Mp~~~~~~~~~~~g~~~~~~~~Mp~~~~~Ls~~ei~~l~aYl~sl~~ 137 (137)
T 2c1d_B 81 NAKMTFEGTFMPAFYKVDGFVRPGDGFSGKAGAEPLAPILNAQQIEDVVAFLVTLKE 137 (137)
T ss_dssp HGGGTSTTCSSCCSSCCSCCSSBBSTTSSSBCCSSCCCSSCHHHHHHHHHHHHTCCC
T ss_pred CccccCCCcccCccccccccccccccccccccChhhhcCCCHHHHHHHHHHHHHccC
Confidence 987666666665 43 26899999999999999874
No 19
>1h32_B Cytochrome C, SOXX; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.1 PDB: 1h31_B* 1h33_B* 2oz1_B*
Probab=99.81 E-value=4.9e-20 Score=115.65 Aligned_cols=85 Identities=29% Similarity=0.556 Sum_probs=65.2
Q ss_pred CCccHHHHHHHHHh----cCCccccCcCCC----CCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhC
Q 033761 8 PPGNAKAGEKIFKT----KCAQCHTVEKGA----GHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLN 79 (112)
Q Consensus 8 ~~~~~~~G~~lf~~----~C~~CH~~~~~g----~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 79 (112)
..+++.+|+.||.+ +|++||++++.+ ....||+|.++.. .|+.++|..+|.+
T Consensus 23 ~~~~~~~G~~lf~~~~~~~C~~CH~~~g~~~~~~~~~~gP~L~~~~~--------------------~~~~~~l~~~i~~ 82 (138)
T 1h32_B 23 APGDPVEGRRLMTDRSVGNCIACHEVTEMADAQFPGTVGPSLDGVAA--------------------RYPEAMIRGILVN 82 (138)
T ss_dssp SCCCHHHHHHHHHCTTTTCGGGTCCCTTC---CCCCSSSCCCTTHHH--------------------HSCHHHHHHHHHC
T ss_pred cCCCHHHHHHHHhhccCCChhhccCCCCcCccccCCcCCCChhHhcc--------------------cCCHHHHHHHHhC
Confidence 35789999999996 799999988631 3456898887643 2478899999999
Q ss_pred CCCCCCCCCCC-C----------------------CCCCCHHHHHHHHHHHHhccC
Q 033761 80 PKKYIPGTKMV-F----------------------PGLKKPQDRADLIAYLKQSTA 112 (112)
Q Consensus 80 ~~~~~~~~~m~-~----------------------~~~ls~~e~~~l~ayl~~l~~ 112 (112)
+....+++.|| | ...||++||++|++||++|++
T Consensus 83 ~~~~~~~~~Mp~~~~~~~~~~~~~~~~g~~~M~~~~~~Ls~~ei~~l~aYl~sl~~ 138 (138)
T 1h32_B 83 SKNVFPETVMPAYYRVEGFNRPGIAFTSKPIEGEIRPLMTAGQIEDVVAYLMTLTQ 138 (138)
T ss_dssp HHHHSTTCSSCCTTCCSCCSSBBSTTSCCBCCSCCCCSSCHHHHHHHHHHHTTCC-
T ss_pred cccCCCCCccCccccccccccccccccCcccCcccccCCCHHHHHHHHHHHHhcCC
Confidence 87555555554 3 236899999999999999874
No 20
>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron transport; HET: HEC; NMR {Pseudomonas putida}
Probab=99.79 E-value=3.3e-20 Score=111.80 Aligned_cols=81 Identities=30% Similarity=0.532 Sum_probs=57.3
Q ss_pred ccHHHHHHHHHhcCCccccCcCC--CCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCC--
Q 033761 10 GNAKAGEKIFKTKCAQCHTVEKG--AGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIP-- 85 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~--g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-- 85 (112)
+++++|+.||.++|++||+.++. +....+|+|.++..+. +.++|..+|.++....+
T Consensus 1 gd~~~G~~lf~~~C~~CH~~~g~~~g~~~~gP~L~~~~~~~--------------------~~~~l~~~i~~p~~~~~g~ 60 (110)
T 2l4d_A 1 GSFTSGEQIFRTRCSSCHTVGNTEPGQPGIGPDLLGVTRQR--------------------DANWLVRWLKVPDQMLAEK 60 (110)
T ss_dssp ----CHHHHHHHHTTTTCCSSCSBTTBCTTSCCCTTGGGTS--------------------CTTHHHHHTTSHHHHHHTT
T ss_pred CCHHHHHHHHHHhhHHhcCCCCCCCCCCCCCCChhhhhccc--------------------CHHHHHHHHhChhhhccCc
Confidence 36789999999899999999876 4467799999875443 34567777765443221
Q ss_pred ------------CCCCCCCCCCCHHHHHHHHHHHHhcc
Q 033761 86 ------------GTKMVFPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 86 ------------~~~m~~~~~ls~~e~~~l~ayl~~l~ 111 (112)
...||... ||++|+++|++||++++
T Consensus 61 ~~~~~~~~~g~~~~~Mp~~~-Ls~~ei~~l~~yl~~~~ 97 (110)
T 2l4d_A 61 DPLAMLLFEQYNRLAMPNMR-LGDAEVSALISYLEEET 97 (110)
T ss_dssp CHHHHHHHHHHTSCCCCCCC-CCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHhccCcCcCCCCC-CCHHHHHHHHHHHHHcc
Confidence 24675333 89999999999999875
No 21
>3o0r_C Nitric oxide reductase subunit C; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa}
Probab=99.77 E-value=7.4e-19 Score=111.05 Aligned_cols=88 Identities=23% Similarity=0.338 Sum_probs=67.3
Q ss_pred CCCccHHHHHHHHH-hcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCC
Q 033761 7 APPGNAKAGEKIFK-TKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIP 85 (112)
Q Consensus 7 ~~~~~~~~G~~lf~-~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 85 (112)
..++++++|++||+ .+|++||+.++.| ...+|+|.++..+... ...+.++|..||.++....+
T Consensus 44 ~~~~~~~~G~~l~~~~~C~~CH~~~g~g-~~~gP~L~~~~~~~~~---------------~~~~~~~l~~~i~~~~~~~~ 107 (146)
T 3o0r_C 44 AMSAAVVRGKLVWEQNNCVGCHTLLGEG-AYFAPELGNVVGRRGG---------------EEGFNTFLQAWMKIQPLNVP 107 (146)
T ss_dssp GCCHHHHHHHHHHHHHTGGGTSEETTEE-CSSSCBCSSGGGGTTH---------------HHHHHHHHHHHHHHCCCCCT
T ss_pred CCchHHHHHHHHHHhCCCcccCCCcCCC-CCCCCCchhhhhhccc---------------ccchHHHHHHHHhCcccCCC
Confidence 44678899999999 5699999998755 3578999987654321 01135799999999887766
Q ss_pred CC-CCCCCCCCCHHHHHHHHHHHHhcc
Q 033761 86 GT-KMVFPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 86 ~~-~m~~~~~ls~~e~~~l~ayl~~l~ 111 (112)
+. .||... ||++|+++|++||++++
T Consensus 108 g~~~Mp~~~-Ls~~ei~~l~ayl~~l~ 133 (146)
T 3o0r_C 108 GRRAMPQFH-LSEGQVDDLAEFLKWSS 133 (146)
T ss_dssp TSCCCCCCC-CCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCC-cCHHHHHHHHHHHHHhc
Confidence 64 676444 79999999999999875
No 22
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=99.76 E-value=1.2e-19 Score=105.57 Aligned_cols=82 Identities=24% Similarity=0.257 Sum_probs=56.4
Q ss_pred ccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCCCCCC
Q 033761 10 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKM 89 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m 89 (112)
+++++|+.||. +|++||+.++.|....+|+|.+.... +..+.|..++.......++..|
T Consensus 2 ~~~~~G~~ly~-~C~~CHg~~g~g~~~~~P~L~~~~~~--------------------~~~~~l~~~~~g~~~~~~~~~M 60 (87)
T 1cno_A 2 GDIEAGKAKAA-VCAACHGQNGISQVPIYPNLAGQKEQ--------------------YLVAALKAYKAGQRQGGQAPVM 60 (87)
T ss_dssp CCHHHHHHHGG-GTHHHHCTTSCCSSTTSCCCTTCCHH--------------------HHHHHHHHHHTTCBCSTTHHHH
T ss_pred ccHHHHHHHHH-HHHhhcCCCCCCCCCCCCCCCCCCHH--------------------HHHHHHHHHHcCCcCCCccccc
Confidence 57899999999 99999999887655567888753110 1233444444333222222356
Q ss_pred -CCCCCCCHHHHHHHHHHHHhccC
Q 033761 90 -VFPGLKKPQDRADLIAYLKQSTA 112 (112)
Q Consensus 90 -~~~~~ls~~e~~~l~ayl~~l~~ 112 (112)
+|...||++||++|++||++|++
T Consensus 61 p~~~~~ls~~ei~~l~~yl~~l~~ 84 (87)
T 1cno_A 61 QGQATALSDADIANLAAYYASNPA 84 (87)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHSCT
T ss_pred HHHHhhCCHHHHHHHHHHHHhCCc
Confidence 47677999999999999999864
No 23
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=99.74 E-value=2.6e-18 Score=96.31 Aligned_cols=70 Identities=23% Similarity=0.436 Sum_probs=55.3
Q ss_pred HHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCCCCCCCCCC
Q 033761 14 AGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPG 93 (112)
Q Consensus 14 ~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m~~~~ 93 (112)
+|+.||..+|++||+.++.| ..+|+|.++.. .|+.++|..+|.++.. .||. .
T Consensus 2 ~G~~l~~~~C~~CHg~~g~g--~~gP~L~~~~~--------------------~~~~~~l~~~i~~g~~-----~Mp~-~ 53 (71)
T 1c75_A 2 DAEAVVQQKCISCHGGDLTG--ASAPAIDKAGA--------------------NYSEEEILDIILNGQG-----GMPG-G 53 (71)
T ss_dssp CHHHHHHHHTHHHHCTTSSC--SSSCCCTTGGG--------------------TSCHHHHHHHHHHCBT-----TBCS-C
T ss_pred cHHHHHHHHHHHHcCCCCCC--CCCCCCccccc--------------------cCCHHHHHHHHHhCCC-----CCCC-C
Confidence 69999998999999987654 34788886532 2368899999988762 4654 6
Q ss_pred CCCHHHHHHHHHHHHhcc
Q 033761 94 LKKPQDRADLIAYLKQST 111 (112)
Q Consensus 94 ~ls~~e~~~l~ayl~~l~ 111 (112)
.||++|+++|++||++++
T Consensus 54 ~ls~~ei~~l~~yl~~~~ 71 (71)
T 1c75_A 54 IAKGAEAEAVAAWLAEKK 71 (71)
T ss_dssp SSCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 789999999999999874
No 24
>3cp5_A Cytochrome C; electron transfer protein, electron transport; HET: HEC; 1.24A {Rhodothermus marinus}
Probab=99.74 E-value=1.6e-18 Score=106.52 Aligned_cols=80 Identities=28% Similarity=0.509 Sum_probs=61.2
Q ss_pred CCccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCC--
Q 033761 8 PPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIP-- 85 (112)
Q Consensus 8 ~~~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-- 85 (112)
.++++.+|+.||.++|++||+.++ ...||.|.++..+. +.++|..+|.++....+
T Consensus 30 ~~~~~~~G~~l~~~~C~~CH~~~g---~~~gP~l~~~~~~~--------------------~~~~l~~~i~~~~~~~~~~ 86 (124)
T 3cp5_A 30 DAALAQQGEQLFNTYCTACHRLDE---RFIGPALRDVTKRR--------------------GPVYIMNVMLNPNGMIQRH 86 (124)
T ss_dssp CHHHHHHHHHHHHHHTTTTCCSSS---CSSSCCCTTHHHHS--------------------CHHHHHHHHHCHHHHHHHC
T ss_pred ChHHHHHHHHHHHHhhHHhCCCCC---CCCCCCcccccccc--------------------CHHHHHHHHhChHhhcccc
Confidence 456788999999999999999864 35689888764332 46789999988764211
Q ss_pred ----------CCCCCCCCCCCHHHHHHHHHHHHhcc
Q 033761 86 ----------GTKMVFPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 86 ----------~~~m~~~~~ls~~e~~~l~ayl~~l~ 111 (112)
+..||.. .||++|+++|++||++|+
T Consensus 87 ~~~~~~~~~~~~~Mp~~-~Ls~~ei~~l~~Yl~~l~ 121 (124)
T 3cp5_A 87 PVMKQLVQEYGTMMTDM-ALSEEQARAILEYLRQVA 121 (124)
T ss_dssp HHHHHHHHHHCSCCCCC-CCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhcCCCCCCCC-CCCHHHHHHHHHHHHHhC
Confidence 2467753 689999999999999875
No 25
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=99.73 E-value=1.3e-18 Score=99.72 Aligned_cols=79 Identities=24% Similarity=0.363 Sum_probs=58.7
Q ss_pred HHHHHHHh-cCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCCC-CCCCC
Q 033761 14 AGEKIFKT-KCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPG-TKMVF 91 (112)
Q Consensus 14 ~G~~lf~~-~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~m~~ 91 (112)
+|+.||.+ +|++||+.++.+ .||+|.++..+..+. ..+.++|..+|.++.....+ ..||.
T Consensus 2 ~G~~l~~~~~C~~CHg~~g~g---~gP~l~~~~~~~~~~---------------~~~~~~l~~~i~~g~~~~~~~~~Mp~ 63 (82)
T 1cch_A 2 DGEALFKSKPCAACHSVDTKM---VGPALKEVAAKNAGV---------------EGAADTLALHIKNGSQGVWGPIPMPP 63 (82)
T ss_dssp CSHHHHHHSTHHHHSCSSSCS---SSCCHHHHHHHSSSC---------------GGGHHHHHHHHHTCCCSSSSSCCCCC
T ss_pred cHHHHHHhCCChhhcCCCCCC---CCcChHHHHHHcCCC---------------chHHHHHHHHhhcCCCCCCCCCCCCC
Confidence 68999996 799999988643 589998765443211 11367999999998654322 45753
Q ss_pred CCCCCHHHHHHHHHHHHhcc
Q 033761 92 PGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 92 ~~~ls~~e~~~l~ayl~~l~ 111 (112)
. .||++|+++|++||++|+
T Consensus 64 ~-~ls~~ei~~l~~yl~~l~ 82 (82)
T 1cch_A 64 N-PVTEEEAKILAEWVLSLK 82 (82)
T ss_dssp C-SCCHHHHHHHHHHHHHCC
T ss_pred C-CCCHHHHHHHHHHHHhcC
Confidence 4 789999999999999985
No 26
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=99.73 E-value=2.6e-18 Score=98.18 Aligned_cols=72 Identities=15% Similarity=0.321 Sum_probs=51.1
Q ss_pred HHHHHHHhcCCccccCcCCCCC-CCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHh---CCC-CCCCCCC
Q 033761 14 AGEKIFKTKCAQCHTVEKGAGH-KQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLL---NPK-KYIPGTK 88 (112)
Q Consensus 14 ~G~~lf~~~C~~CH~~~~~g~~-~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---~~~-~~~~~~~ 88 (112)
+|+.||.. |++||+.++.|.. ..+|+|.+. +.+++...|. ++. ...++..
T Consensus 2 ~G~~ly~~-Ca~CHg~~g~g~~~~~~P~L~g~------------------------~~~~~~~~l~~~~~g~~~~~~~~~ 56 (79)
T 1c53_A 2 DGAALYKS-CVGCHGADGSKQAMGVGHAVKGQ------------------------KADELFKKLKGYADGSYGGEKKAV 56 (79)
T ss_pred cHHHHHHH-HHhccCCCCCCCCCCCCCcCCCC------------------------CHHHHHHHHHHHHcCCCCCCcccc
Confidence 69999997 9999999877654 457877753 2445555543 332 2223346
Q ss_pred CC-CCCCCCHHHHHHHHHHHHhc
Q 033761 89 MV-FPGLKKPQDRADLIAYLKQS 110 (112)
Q Consensus 89 m~-~~~~ls~~e~~~l~ayl~~l 110 (112)
|| |...||++||++|++||++|
T Consensus 57 Mp~~~~~Ls~~ei~~l~~Yl~sl 79 (79)
T 1c53_A 57 MTNLVKRYSDEEMKAMADYMSKL 79 (79)
T ss_pred hHHHHhhCCHHHHHHHHHHHHhC
Confidence 74 76779999999999999986
No 27
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=99.73 E-value=2.5e-18 Score=98.58 Aligned_cols=79 Identities=16% Similarity=0.243 Sum_probs=58.1
Q ss_pred HHHHHHH-hcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCC-CCCCCC
Q 033761 14 AGEKIFK-TKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIP-GTKMVF 91 (112)
Q Consensus 14 ~G~~lf~-~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~m~~ 91 (112)
+|+.||. .+|++||+.++.+ .||+|..+..+..+. .++.++|..+|+++..... ...||.
T Consensus 2 ~G~~l~~~~~C~~CHg~~g~g---~gp~l~~~~~~~~~~---------------~~~~~~l~~~i~~g~~~~~~~~~Mp~ 63 (82)
T 2exv_A 2 DPEVLAKNKGCVACHAIDTKM---VGPAYKDVAAKFAGQ---------------AGAEAELAQRIKNGSQGVWGPIPMPP 63 (82)
T ss_dssp CHHHHHHHTTGGGTCCSSSCC---SSCCHHHHHHHHTTC---------------TTHHHHHHHHHHHCBSSSSSSSCBCC
T ss_pred cHHHHHHhCCchhhcCCCCCC---CCcCHHHHHHHhcCC---------------cchHHHHHHHHHcCCCCCCCCCCCCC
Confidence 6999998 6799999988654 578888765433211 1257899999998765332 345753
Q ss_pred CCCCCHHHHHHHHHHHHhcc
Q 033761 92 PGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 92 ~~~ls~~e~~~l~ayl~~l~ 111 (112)
. .||++||++|++||++|+
T Consensus 64 ~-~ls~~ei~~l~~yl~~lk 82 (82)
T 2exv_A 64 N-AVSDDEAQTLAKWVLSQK 82 (82)
T ss_dssp C-CCCHHHHHHHHHHHHTCC
T ss_pred C-CCCHHHHHHHHHHHHhCC
Confidence 3 689999999999999885
No 28
>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}
Probab=99.73 E-value=7.7e-19 Score=104.88 Aligned_cols=78 Identities=27% Similarity=0.345 Sum_probs=54.6
Q ss_pred CccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHh----CCCCCC
Q 033761 9 PGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLL----NPKKYI 84 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~----~~~~~~ 84 (112)
.+++++|+.+|+ +|++||+.++.|....+|+|.+. +.+++..+|. ......
T Consensus 21 ~~~~~~G~~l~~-~C~~CHg~~g~g~~~~~p~L~g~------------------------~~~~~~~~l~~~~~g~~~~~ 75 (103)
T 2zzs_A 21 AGDAAAGQAKAA-VCAACHGADGNATIPGYPNLKGQ------------------------NEQYIVSSIKAYKNKERSGG 75 (103)
T ss_dssp -CCHHHHHHHTT-TTHHHHCTTSCCCSTTCCCCTTC------------------------CHHHHHHHHHHHHTTCBCST
T ss_pred cCCHHHHHHHHH-HHHhhcCCCCCCCCCCCCCCCCC------------------------CHHHHHHHHHHHHcCCCCCC
Confidence 678999999999 99999999887665567888753 2334444443 222111
Q ss_pred CCCCCC-CCCCCCHHHHHHHHHHHHhcc
Q 033761 85 PGTKMV-FPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 85 ~~~~m~-~~~~ls~~e~~~l~ayl~~l~ 111 (112)
....|| |...||++|+++|++||++|+
T Consensus 76 ~~~~Mp~~~~~ls~~ei~~l~~yl~~l~ 103 (103)
T 2zzs_A 76 LAAVMQAQASLLSDDDIANLAAYYSSLK 103 (103)
T ss_dssp THHHHHHHHTTCCHHHHHHHHHHHHHC-
T ss_pred cccchHHHHhhCCHHHHHHHHHHHHhCC
Confidence 112564 767799999999999999975
No 29
>1e29_A Cytochrome C549; electron transport, PSII associated cytochrome, low potential, BIS_histidinyl, PSII modulator; HET: HEC; 1.21A {Synechocystis SP} SCOP: a.3.1.1
Probab=99.73 E-value=7.9e-19 Score=110.07 Aligned_cols=89 Identities=24% Similarity=0.297 Sum_probs=62.4
Q ss_pred CCccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCCC-
Q 033761 8 PPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPG- 86 (112)
Q Consensus 8 ~~~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~- 86 (112)
..+++++|++||.++|++||+ . +.+.+||+|. + + . +.+.++ ....|+.++|.+||.+|....+.
T Consensus 22 ~~~d~~~G~~lf~~~Ca~CH~-~--g~~~~gP~L~-l-g-~----~~~~~s-----~~~~~~~~~L~~~l~~p~~~~~~~ 86 (135)
T 1e29_A 22 TARQFTNGQKIFVDTCTQCHL-Q--GKTKTNNNVS-L-G-L----ADLAGA-----EPRRDNVLALVEFLKNPKSYDGED 86 (135)
T ss_dssp CHHHHHHHHHHHHHHTHHHHG-G--GCBSSSSSCS-S-S-H----HHHHTS-----SSCCSSHHHHHHHHHSCBCTTSCS
T ss_pred CcccHHHHHHHHHhHHHHhcC-C--CCCCCCCCce-e-c-c----cccccc-----ccccCCHHHHHHHHhChhhccCcc
Confidence 346789999999989999999 3 3356789887 4 2 0 111111 11238999999999988654321
Q ss_pred ------------CCCCCCCCCCHHHHHHHHHHHHhcc
Q 033761 87 ------------TKMVFPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 87 ------------~~m~~~~~ls~~e~~~l~ayl~~l~ 111 (112)
.+||....||++|+++|++||.++.
T Consensus 87 ~~~~~~p~~~~~~~mp~~~~Lsd~ei~~laaYl~~~~ 123 (135)
T 1e29_A 87 DYSELHPNISRPDIYPEMRNYTEDDIFDVAGYTLIAP 123 (135)
T ss_dssp BCTTTSCCTTCTTTCGGGTTCCHHHHHHHHHHHHHHH
T ss_pred ccccccccccchhcccccccCCHHHHHHHHHHHHhcc
Confidence 2344334689999999999998874
No 30
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Probab=99.72 E-value=5.3e-18 Score=97.98 Aligned_cols=82 Identities=23% Similarity=0.367 Sum_probs=52.8
Q ss_pred CccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCCCCC
Q 033761 9 PGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTK 88 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 88 (112)
.+++++|+.||.++|++||+.++.+.. .+|.+. .+.+.... .++.+.|..+|+++. ..|
T Consensus 2 ~g~~~~G~~ly~~~Ca~CHg~~g~g~~-~~~~l~---------------~p~l~~~~-~~~~~~l~~~i~~g~----~~M 60 (85)
T 3cu4_A 2 GGSGAGGGELFATHCAGCHPQGGNTVH-PEKTLA---------------RARREANG-IRTVRDVAAYIRNPG----PGM 60 (85)
T ss_dssp -----CHHHHHHHHTTTTSGGGCCSSS-TTCCCC---------------HHHHHHTT-CCSHHHHHHHTTSCC----TTS
T ss_pred CccHHHHHHHHHHHhHHhCCCCCCCCC-CCCCCC---------------chhhhhcC-CCCHHHHHHHHHcCC----CCC
Confidence 357889999999999999998764421 112221 11121111 357889999998764 234
Q ss_pred CCCCC-CCCHHHHHHHHHHHHhcc
Q 033761 89 MVFPG-LKKPQDRADLIAYLKQST 111 (112)
Q Consensus 89 m~~~~-~ls~~e~~~l~ayl~~l~ 111 (112)
++|.. .||++||++|++||+++.
T Consensus 61 p~~~~~~ls~~ei~~l~~yi~~~~ 84 (85)
T 3cu4_A 61 PAFGEAMIPPADALKIGEYVVASF 84 (85)
T ss_dssp CCCCTTTSCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhC
Confidence 45776 799999999999999874
No 31
>2gc4_D Cytochrome C-L; electron transfer, methylamine dehydrogenase, blue copper protein, oxidoreductase, electron transport; HET: TRQ HEM; 1.90A {Paracoccus denitrificans} SCOP: a.3.1.1 PDB: 2gc7_D* 2mta_C* 1mg2_D* 1mg3_D*
Probab=99.72 E-value=2.9e-17 Score=104.04 Aligned_cols=83 Identities=19% Similarity=0.300 Sum_probs=62.0
Q ss_pred CCccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCCCC
Q 033761 8 PPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGT 87 (112)
Q Consensus 8 ~~~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 87 (112)
..+++.+|+.||..+|++||+.++.|. .+|+|.+.... + +..++.++|..+|.++. .+.
T Consensus 42 ~~~~~~~G~~l~~~~Ca~CHg~~g~g~--~gP~L~~~~~~---------~-------~~~~~~~~l~~~i~~G~---~~~ 100 (147)
T 2gc4_D 42 DPEILPEAEELYAGMCSGCHGHYAEGK--IGPGLNDAYWT---------Y-------PGNETDVGLFSTLYGGA---TGQ 100 (147)
T ss_dssp CTTTHHHHHHHHHHHTHHHHCTTSSCS--SSCCCSSSCCS---------S-------GGGGSHHHHHHHHHHCC---STT
T ss_pred CHHHHHHHHHHHHhhcHHhCCCCCCCC--CCCCCCccccc---------c-------cCcCCHHHHHHHHHcCC---CCC
Confidence 456789999999999999999887543 46888753211 1 01236888999998874 233
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcc
Q 033761 88 KMVFPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 88 ~m~~~~~ls~~e~~~l~ayl~~l~ 111 (112)
|++|...||++||++|++||+++.
T Consensus 101 Mp~~~~~ls~~ei~~l~~Yl~~l~ 124 (147)
T 2gc4_D 101 MGPMWGSLTLDEMLRTMAWVRHLY 124 (147)
T ss_dssp CCCCTTTSCHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhc
Confidence 446777899999999999999985
No 32
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Probab=99.72 E-value=6e-18 Score=97.03 Aligned_cols=73 Identities=23% Similarity=0.430 Sum_probs=56.3
Q ss_pred ccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCCCCCC
Q 033761 10 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKM 89 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m 89 (112)
+++.+|+.||..+|++||+.++ ..+|+|.+. .++.++|..+|+++.. .|+
T Consensus 2 ~~~~~G~~l~~~~C~~CHg~~g----g~~P~L~~~----------------------~~~~~~l~~~i~~g~~----~Mp 51 (80)
T 1wve_C 2 SQWGSGKNLYDKVCGHCHKPEV----GVGPVLEGR----------------------GLPEAYIKDIVRNGFR----AMP 51 (80)
T ss_dssp CCSSSHHHHHHHTTHHHHSTTT----CSSCCCTTS----------------------CCCHHHHHHHHHHCBT----TBC
T ss_pred ccHHHHHHHHHHHHHHhCCCCC----CCCCCCCCC----------------------CCCHHHHHHHHHhCcC----CCC
Confidence 4567899999999999999762 357887641 1368899999987652 344
Q ss_pred CCC-CCCCHHHHHHHHHHHHhccC
Q 033761 90 VFP-GLKKPQDRADLIAYLKQSTA 112 (112)
Q Consensus 90 ~~~-~~ls~~e~~~l~ayl~~l~~ 112 (112)
+|. ..||++|+++|++||+++++
T Consensus 52 ~~~~~~ls~~ei~~l~~yl~~~~~ 75 (80)
T 1wve_C 52 AFPASYVDDESLTQVAEYLSSLPA 75 (80)
T ss_dssp CCCTTTSCHHHHHHHHHHHHHSCC
T ss_pred CCcccCCCHHHHHHHHHHHHHCcC
Confidence 563 57899999999999999864
No 33
>1f1c_A Cytochrome C549; dimeric cytochrome, electron transport; HET: HEM; 2.30A {Arthrospira maxima} SCOP: a.3.1.1
Probab=99.72 E-value=6.5e-18 Score=104.40 Aligned_cols=87 Identities=20% Similarity=0.305 Sum_probs=62.0
Q ss_pred CccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCC------
Q 033761 9 PGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKK------ 82 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------ 82 (112)
.+++++|+.||.++|++||+.++ ...+|+|....... .......|+.++|..+|.++..
T Consensus 21 ~~~~~~G~~lf~~~Ca~CHg~~g---~~~gP~l~~~~~~l------------~~~~~~~~~~~~l~~~i~~~~~~~~~~~ 85 (129)
T 1f1c_A 21 LKEIKKGQQVFNAACAQCHALGV---TRTNPDVNLSPEAL------------ALATPPRDNIAALVDYIKNPTTYDGFVE 85 (129)
T ss_dssp HHHHHHHHHHHHHHTHHHHGGGC---CTTCSSSCSSHHHH------------HTSSSCCCSHHHHHHHHHSCBCTTSCSB
T ss_pred cccHHHHHHHHHhhhHHhcCCCC---CCCCCCcccCHHHH------------HhcCCccchHHHHHHHHhCCcccccchh
Confidence 46788999999999999999754 34578776311100 0111235789999999998763
Q ss_pred -------CCCCCCCC-CCCCCCHHHHHHHHHHHHhcc
Q 033761 83 -------YIPGTKMV-FPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 83 -------~~~~~~m~-~~~~ls~~e~~~l~ayl~~l~ 111 (112)
..++..|| | ..||++||++|++||+++.
T Consensus 86 ~~~~~~~~~~~~~Mp~~-~~Ls~~ei~~l~~Yl~~l~ 121 (129)
T 1f1c_A 86 ISELHPSLKSSDIFPKM-RNISEDDLYNVAGYILLQP 121 (129)
T ss_dssp CTTTSCSTTCTTTCGGG-SSCCHHHHHHHHHHHHHHH
T ss_pred HhhhhhcccCCCCCCCC-CCCCHHHHHHHHHHHHHcC
Confidence 13345675 6 6789999999999999875
No 34
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=99.72 E-value=7.7e-18 Score=97.10 Aligned_cols=81 Identities=19% Similarity=0.209 Sum_probs=57.9
Q ss_pred ccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCCCCCC
Q 033761 10 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKM 89 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m 89 (112)
+++++|+.||.++|++||+.++.+ ...+|.|....... -..++.+.+..+|.++. +.|+
T Consensus 2 ~~~~~G~~l~~~~C~~CHg~~~~~-~~~~p~l~~~~~~~----------------~~~~~~~~~~~~i~~g~----~~Mp 60 (86)
T 3ph2_B 2 ADLATGAKVFSANCAACHAGGINL-VNAEKTLKKEALEK----------------FGMNSIVAITTVVTNGK----AGMP 60 (86)
T ss_dssp CCHHHHHHHHHHHTHHHHCSSSCT-TCSSSSCCHHHHHH----------------TTCCSHHHHHHHHHHCB----TTBC
T ss_pred ccHHHHHHHHHHHhHHhCCCCCCC-CCCCCccChhhHHh----------------ccCCCHHHHHHHHHhCC----CCCC
Confidence 578999999998999999976543 33456665321000 01136788889988765 2344
Q ss_pred CCCCCCCHHHHHHHHHHHHhcc
Q 033761 90 VFPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 90 ~~~~~ls~~e~~~l~ayl~~l~ 111 (112)
+|...||++|+++|++||++++
T Consensus 61 ~~~~~ls~~ei~~l~~yl~~~~ 82 (86)
T 3ph2_B 61 AFKGRLTDDQIAAVAAYVLDQA 82 (86)
T ss_dssp CCTTTSCHHHHHHHHHHHHHHH
T ss_pred CcccCCCHHHHHHHHHHHHHhh
Confidence 6767899999999999999875
No 35
>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron, thylakoid, photosynthesis, metal-binding, electron transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB: 2ce1_A* 2dge_A* 2v07_A*
Probab=99.71 E-value=3.2e-17 Score=97.88 Aligned_cols=86 Identities=19% Similarity=0.278 Sum_probs=57.7
Q ss_pred CccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCCCC-
Q 033761 9 PGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGT- 87 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~- 87 (112)
++++++|++||..+|++||+.++.|.. .|+.+. .+.+...+ .++.++|..+|.++...+|..
T Consensus 2 a~~~~~G~~l~~~~Ca~CHg~~g~g~~-~g~~~~---------------~p~l~~~~-~~~~~~l~~~i~~g~~~Mp~~~ 64 (105)
T 2ce0_A 2 TLDIQRGATLFNRACAACHDTGGNIIQ-PGATLF---------------TKDLERNG-VDTEEEIYRVTYFGKGRMPGFG 64 (105)
T ss_dssp -CCHHHHHHHHHHHTTTTSGGGCCSSS-TTCCSS---------------HHHHHHTT-CCSHHHHHHHHHHCBTTBCBCB
T ss_pred chhHHHHHHHHHHHHHHhCCCCCCcCC-CCcccC---------------CcchhhcC-CCCHHHHHHHHHhCcCCCCccc
Confidence 467899999999999999998875431 233211 11111111 146889999998875433322
Q ss_pred -------CCCCCCCCCHHHHHHHHHHHHhcc
Q 033761 88 -------KMVFPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 88 -------~m~~~~~ls~~e~~~l~ayl~~l~ 111 (112)
|++|...||++||++|++||+++.
T Consensus 65 ~~~~~~~M~~~~~~ls~~ei~~l~~yl~~~~ 95 (105)
T 2ce0_A 65 EKCTPRGQCTFGPRLQDEEIKLLAEFVKFQA 95 (105)
T ss_dssp TTCCSGGGBCSSCCBCHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCHHHHHHHHHHHHHhh
Confidence 234556799999999999999874
No 36
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=99.71 E-value=8.8e-18 Score=95.84 Aligned_cols=77 Identities=14% Similarity=0.199 Sum_probs=55.7
Q ss_pred HHHHHH-hcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCC-CCCCCCCCC
Q 033761 15 GEKIFK-TKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKY-IPGTKMVFP 92 (112)
Q Consensus 15 G~~lf~-~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~m~~~ 92 (112)
|++||. .+|++||+.++.+ .||+|.++..+... .+.++|..+|+++... .+...||-.
T Consensus 1 ~~~l~~~~~C~~CHg~~g~~---~gP~l~~~~~~~~~-----------------~~~~~l~~~i~~g~~~~~~~~~Mp~~ 60 (79)
T 2d0s_A 1 DEALAKAKGCMACHAIDKKL---VGPSYKDVAKKYTE-----------------ADVPKLVEKVKKGGAGVWGPVPMPPH 60 (79)
T ss_dssp CHHHHHHTTGGGTCCSSSCS---SSCCHHHHHHHCCG-----------------GGHHHHHHHHHHCBCSSSCSSCBCCC
T ss_pred CHhHHhcCCChhhcCCCCCC---CCCCHHHHHHHHcc-----------------ccHHHHHHHHhcCCCCCCCCCCCCCC
Confidence 688997 4799999988643 58998876543211 0467899999887542 233456533
Q ss_pred CCCCHHHHHHHHHHHHhcc
Q 033761 93 GLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 93 ~~ls~~e~~~l~ayl~~l~ 111 (112)
..||++||++|++||++|+
T Consensus 61 ~~Ls~~ei~~l~~yl~~lk 79 (79)
T 2d0s_A 61 PQVAEADIEKIVRWVLTLK 79 (79)
T ss_dssp TTSCHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHhCc
Confidence 5789999999999999875
No 37
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=99.70 E-value=6e-18 Score=97.39 Aligned_cols=81 Identities=21% Similarity=0.231 Sum_probs=55.6
Q ss_pred ccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCCCCCC
Q 033761 10 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKM 89 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m 89 (112)
+++++|+.||..+|++||+.++.+. +|.+..+. +.+... ..++.+.|..+|+++. ..|+
T Consensus 1 ~~~~~G~~l~~~~C~~CHg~~g~g~---~~~~~~~~-------------~~l~~~-~~~~~~~l~~~i~~g~----~~Mp 59 (85)
T 1gdv_A 1 ADLDNGEKVFSANCAACHAGGNNAI---MPDKTLKK-------------DVLEAN-SMNTIDAITYQVQNGK----NAMP 59 (85)
T ss_dssp CHHHHHHHHHHHHTHHHHGGGCCSS---STTSCCCH-------------HHHHHT-TCCSHHHHHHHHHHCB----TTBC
T ss_pred CcHHHHHHHHHHhhHhhCCCCcCCC---CCCCCCCc-------------HHHHHc-cCCCHHHHHHHHHhCc----CCCC
Confidence 4678999999999999999876542 33221111 111111 2346888999998764 2333
Q ss_pred CCCCCCCHHHHHHHHHHHHhcc
Q 033761 90 VFPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 90 ~~~~~ls~~e~~~l~ayl~~l~ 111 (112)
+|...||++|+++|++||+++.
T Consensus 60 ~~~~~ls~~ei~~l~~yl~~~~ 81 (85)
T 1gdv_A 60 AFGGRLVDEDIEDAANYVLSQS 81 (85)
T ss_dssp CCTTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHh
Confidence 5766799999999999999875
No 38
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=99.70 E-value=8e-18 Score=97.69 Aligned_cols=85 Identities=21% Similarity=0.285 Sum_probs=57.1
Q ss_pred ccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCCCCCC
Q 033761 10 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKM 89 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m 89 (112)
+++++|+.||..+|++||+.++.+. ..+|+|....... ....+ ...+.+.|..+|.++. ..|+
T Consensus 1 g~~~~G~~l~~~~C~~CHg~~g~g~-~~~P~L~~~~~~~--~l~~~----------~~~~~~~l~~~i~~g~----~~Mp 63 (89)
T 1f1f_A 1 GDVAAGASVFSANCAACHMGGRNVI-VANKTLSKSDLAK--YLKGF----------DDDAVAAVAYQVTNGK----NAMP 63 (89)
T ss_dssp -CHHHHHHHHHHHTHHHHGGGCCSS-STTCCSSHHHHHH--HSTTT----------TTCHHHHHHHHHHHCB----TTBC
T ss_pred CcHHHHHHHHHHHhHHhCCCCCCCC-cCCCCCCHHHHHH--Hhhcc----------CccCHHHHHHHHHcCC----CCCC
Confidence 4688999999989999999987653 3578885311000 00000 0013678888887754 2333
Q ss_pred CCCCCCCHHHHHHHHHHHHhcc
Q 033761 90 VFPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 90 ~~~~~ls~~e~~~l~ayl~~l~ 111 (112)
+|...||++|+++|++||+++.
T Consensus 64 ~~~~~ls~~ei~~l~~yl~~~~ 85 (89)
T 1f1f_A 64 GFNGRLSPLQIEDVAAYVVDQA 85 (89)
T ss_dssp CCTTTSCHHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHh
Confidence 5777799999999999999875
No 39
>3oa8_B SOXX; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_B*
Probab=99.70 E-value=8.4e-17 Score=107.13 Aligned_cols=85 Identities=24% Similarity=0.408 Sum_probs=65.4
Q ss_pred CCccHHHHHHHHHh----------------cCCccccCcCCCC--CCCCCCcccccC-CccccCCCCCCchhhhcccccc
Q 033761 8 PPGNAKAGEKIFKT----------------KCAQCHTVEKGAG--HKQGPNLNGLFG-RQSGTTPGYSYSAANKNMAVNW 68 (112)
Q Consensus 8 ~~~~~~~G~~lf~~----------------~C~~CH~~~~~g~--~~~gP~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 68 (112)
..++.++|+.||.. +|++||++++.|. +..||+|.++.. +. |
T Consensus 94 ~~gd~~~Ge~lf~~G~g~~~~d~g~~ly~~~CaaCHg~dG~G~~~G~~GP~Lag~~~~r~-------------------~ 154 (208)
T 3oa8_B 94 VLGSWKDGAKVAQNGRGGQFSDPPGTVSGGNCYACHQLDPKEVSYGTLGPSLVGYGRERN-------------------F 154 (208)
T ss_dssp SCCCHHHHHHHHHCCCSSSTTSCTTCCCCCCGGGTCCCSTTCCCCCSSSCCCTTHHHHTT-------------------T
T ss_pred CccCHHHHHHHHhccccccccchhhhhhcccchhhCCCCCcCCCCCCcCCCccccccccc-------------------C
Confidence 35789999999985 7999999988763 467899998643 21 2
Q ss_pred cHHHHH---HHHhCCCCCCCCCCCC-CC--CCCCHHHHHHHHHHHHhcc
Q 033761 69 EEKTLY---DYLLNPKKYIPGTKMV-FP--GLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 69 ~~~~l~---~~l~~~~~~~~~~~m~-~~--~~ls~~e~~~l~ayl~~l~ 111 (112)
+.+.|. .+|.++....+++.|| |. +.||++||++|++||+++.
T Consensus 155 ~~~~L~~~~~~I~~~~~~~p~~~MP~fa~~g~LSdeEIaaLaaYL~s~~ 203 (208)
T 3oa8_B 155 SAEDAKIAFAKVYDAQASLACSSMPRFGVNGVLTEQQIKDVVAYLFDPE 203 (208)
T ss_dssp CHHHHHHHHHHHHCGGGTSTTCSSCCTTTTTSSCHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHhhCccCCCCCCCCCcccccCCCCHHHHHHHHHHHHccC
Confidence 455554 6788877666777785 65 4699999999999999875
No 40
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=99.70 E-value=1.4e-17 Score=96.42 Aligned_cols=83 Identities=27% Similarity=0.367 Sum_probs=55.4
Q ss_pred ccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCCCCCC
Q 033761 10 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKM 89 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m 89 (112)
+++++|+.||.++|++||+.++ ...+|.+........ .+. ....+.+.|..+|.++. +.|+
T Consensus 1 gd~~~G~~l~~~~C~~CHg~~g---~~~~p~~~~~~~~~~----~~l--------~~~~~~~~l~~~i~~g~----~~Mp 61 (88)
T 3dmi_A 1 GDVGAGEQIFNANCAACHAGGQ---NVIMPEKTLEKEALD----QYL--------AGGRTEKSIISQVTGGK----NAMP 61 (88)
T ss_dssp CCHHHHHHHHHHHTHHHHGGGC---CSSSTTSCSSHHHHH----HHS--------TTCSSHHHHHHHHHHCB----TTBC
T ss_pred CcHHHHHHHHHHHHHHhCCCCC---CCcCCCCCCCHHHHH----HHH--------hcCCCHHHHHHHHHcCc----CCCC
Confidence 4789999999999999999554 234565542211000 000 00125678888888765 2344
Q ss_pred CCCCCCCHHHHHHHHHHHHhcc
Q 033761 90 VFPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 90 ~~~~~ls~~e~~~l~ayl~~l~ 111 (112)
+|...||++||++|++||+++.
T Consensus 62 ~~~~~ls~~ei~~l~~yl~~~~ 83 (88)
T 3dmi_A 62 AFGGRLSDEEIANVAAYVLASA 83 (88)
T ss_dssp CCTTTSCHHHHHHHHHHHHHHH
T ss_pred CcCCCCCHHHHHHHHHHHHHHh
Confidence 5777899999999999999874
No 41
>2c8s_A Cytochrome C-L; HAEM, heme, electron transport, metal-binding; HET: HEM; 1.6A {Methylobacterium extorquens} SCOP: a.3.1.1
Probab=99.70 E-value=8.4e-17 Score=104.56 Aligned_cols=82 Identities=22% Similarity=0.388 Sum_probs=61.8
Q ss_pred CccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCCCCC
Q 033761 9 PGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTK 88 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 88 (112)
.+++.+|+.||..+|++||+.++.|. .||+|.+... .+ +..|+.+.|..+|.++.. +.|
T Consensus 51 ~~~~~~G~~lf~~~Ca~CHg~~g~G~--~gP~L~~~~~---------~~-------~~~~~~~~l~~~i~~G~~---g~M 109 (172)
T 2c8s_A 51 KSCLRNGESLFATSCSGCHGHLAEGK--LGPGLNDNYW---------TY-------PSNTTDVGLFATIFGGAN---GMM 109 (172)
T ss_dssp HHHHHHHHHHHHHHTHHHHCTTSSCS--SSCCSSSSCC---------SS-------GGGGSHHHHHHHHHTCTT---SSS
T ss_pred HHHHHHHHHHHHhhhHHhCCCCCCCC--CCCCCccccc---------cc-------cccCCHHHHHHHHHhCCC---CCC
Confidence 45678999999999999999987653 4798885321 11 112468899999998752 333
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcc
Q 033761 89 MVFPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 89 m~~~~~ls~~e~~~l~ayl~~l~ 111 (112)
++|...||++||++|++||++|.
T Consensus 110 P~~~~~Lsd~ei~~laaYl~sl~ 132 (172)
T 2c8s_A 110 GPHNENLTPDEMLQTIAWIRHLY 132 (172)
T ss_dssp CSCCCCSCHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc
Confidence 35777899999999999999986
No 42
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=99.69 E-value=3.4e-17 Score=95.57 Aligned_cols=83 Identities=16% Similarity=0.193 Sum_probs=57.0
Q ss_pred CccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhc-ccccccHHHHHHHHhCCCCCCCCC
Q 033761 9 PGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKN-MAVNWEEKTLYDYLLNPKKYIPGT 87 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~ 87 (112)
++++++|++||.++|++||+.++.+. ..+|.|.... +.. ....++.++|..+|.++. +.
T Consensus 3 ~~~~~~G~~l~~~~C~~CHg~~g~g~-~~~p~l~~~~---------------~~~~~~~~~~~~~l~~~i~~g~----~~ 62 (91)
T 1ls9_A 3 AELLADGKKVFAGNCAACHLGGNNSV-LADKTLKKDA---------------IEKYLEGGLTLEAIKYQVNNGK----GA 62 (91)
T ss_dssp HHHHHHHHHHHHHHTHHHHGGGCCSS-STTSCSSHHH---------------HHHHSTTCSCHHHHHHHHHHCB----TT
T ss_pred HHHHHHHHHHHHHHhHHhCCCCCCCC-CCCCCCCchh---------------HHHhccCCCCHHHHHHHHHcCc----CC
Confidence 45688999999999999999875432 2245554210 000 000135788999998764 33
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcc
Q 033761 88 KMVFPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 88 ~m~~~~~ls~~e~~~l~ayl~~l~ 111 (112)
|++|...||++||++|++||+++.
T Consensus 63 Mp~~~~~ls~~ei~~l~~yl~~~~ 86 (91)
T 1ls9_A 63 MPAWADRLDEDDIEAVSNYVYDQA 86 (91)
T ss_dssp BCCCTTTSCHHHHHHHHHHHHHHH
T ss_pred CcchhhhCCHHHHHHHHHHHHHhc
Confidence 445777899999999999999875
No 43
>2d0w_A Cytochrome CL; electron transfer, electron transport; HET: HEM; 1.98A {Hyphomicrobium denitrificans}
Probab=99.69 E-value=1.4e-16 Score=103.26 Aligned_cols=82 Identities=24% Similarity=0.400 Sum_probs=62.7
Q ss_pred CCccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCCCC
Q 033761 8 PPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGT 87 (112)
Q Consensus 8 ~~~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 87 (112)
..+++.+|+.||..+|++||+.++.| ..||+|.+..... ...|+.++|..+|.++.. +
T Consensus 44 ~~~~~~~G~~lf~~~Ca~CHg~~g~G--~~gP~L~~~~~~~----------------~~~~~~~~l~~~i~~G~~---~- 101 (170)
T 2d0w_A 44 VAGCLPKGEEIYLESCSGCHGHIGEG--KVGPGLNDSYWTY----------------PKNTTDKGLFETIFGGAN---G- 101 (170)
T ss_dssp CGGGHHHHHHHHHHHTHHHHCTTSCC--SSSCCSSSSCCSS----------------GGGGSHHHHHHHHHHCCS---T-
T ss_pred CHHHHHHHHHHHHhhhHHhCCCCCCC--CCCCCCccchhhc----------------cccCCHHHHHHHHHcCCC---C-
Confidence 35678899999999999999988754 3479887642211 112468899999988752 3
Q ss_pred CC-CCCCCCCHHHHHHHHHHHHhcc
Q 033761 88 KM-VFPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 88 ~m-~~~~~ls~~e~~~l~ayl~~l~ 111 (112)
+| +|...||++||++|++||++|.
T Consensus 102 ~Mp~~~~~Ls~~ei~~l~aYl~sl~ 126 (170)
T 2d0w_A 102 MMGPHGQDLELDNMLKLIAWIRHIQ 126 (170)
T ss_dssp TCCCCTTTSCHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcc
Confidence 55 5777899999999999999986
No 44
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=99.68 E-value=6.5e-17 Score=93.88 Aligned_cols=82 Identities=18% Similarity=0.313 Sum_probs=55.0
Q ss_pred ccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhc-ccccccHHHHHHHHhCCCCCCCCCC
Q 033761 10 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKN-MAVNWEEKTLYDYLLNPKKYIPGTK 88 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~ 88 (112)
+++++|+.||..+|++||+.++.+. ...|.|... .+.. ....++.+.|..+|.++. +.|
T Consensus 2 ~~~~~G~~l~~~~C~~CHg~~g~~~-~~~~~l~~~---------------~~~~~~~~~~~~~~l~~~i~~g~----~~M 61 (89)
T 1c6r_A 2 ADLALGKQTFEANCAACHAGGNNSV-IPDHTLRKA---------------AMEQFLQGGFNLEAITYQVENGK----GAM 61 (89)
T ss_dssp CCHHHHHHHHHHHTHHHHGGGCCSS-STTCCSSHH---------------HHHHHSTTCSSHHHHHHHHHHCB----TTB
T ss_pred ccHHHHHHHHHHHHHHHcCCCCCCC-CCCcCcCch---------------hHHHHhcCCCCHHHHHHHHHcCC----CCC
Confidence 5789999999999999999865432 112333210 0000 000135788889988764 233
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcc
Q 033761 89 MVFPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 89 m~~~~~ls~~e~~~l~ayl~~l~ 111 (112)
++|...||++|+++|++||+++.
T Consensus 62 p~~~~~ls~~ei~~l~~yl~~~~ 84 (89)
T 1c6r_A 62 PAWSGTLDDDEIAAVAAYVYDQA 84 (89)
T ss_dssp CCCTTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHHc
Confidence 35777899999999999999875
No 45
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=99.68 E-value=4.9e-17 Score=94.79 Aligned_cols=85 Identities=22% Similarity=0.331 Sum_probs=54.1
Q ss_pred ccHHHHHHHHHhcCCccccCcCCCCCCCCCCccc-ccC-CccccCCCCCCchhhhcccccccH-HHHHHHHhCCCCCCCC
Q 033761 10 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNG-LFG-RQSGTTPGYSYSAANKNMAVNWEE-KTLYDYLLNPKKYIPG 86 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~ 86 (112)
+++++|++||.++|++||+.++.+.. ..|.+.. ... ...... ....+. +.|..++.++. +
T Consensus 1 ~d~~~G~~l~~~~C~~CHg~~g~g~~-~~~~~~~~~~~~~l~~~~------------~~~~~~~~~~~~~i~~g~----~ 63 (93)
T 3dr0_A 1 ADAAAGAQVFAANCAACHAGGNNAVM-PTKTLKADALKTYLAGYK------------DGSKSLEEAVAYQVTNGQ----G 63 (93)
T ss_dssp CCHHHHHHHHHHHTHHHHGGGCCSSS-TTCCSSHHHHHHHSTTTT------------TTSSCHHHHHHHHHHHCB----T
T ss_pred CcHHHHHHHHHHHhHHhcCCCCCCCC-CCcccCcchHHHHHhhcc------------cccccHHHHHHHHHHcCC----C
Confidence 47899999999999999998764321 1222221 000 000000 001144 78888888765 2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcc
Q 033761 87 TKMVFPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 87 ~~m~~~~~ls~~e~~~l~ayl~~l~ 111 (112)
.|++|...||++|+++|++||++|.
T Consensus 64 ~Mp~~~~~ls~~ei~~l~~yl~~l~ 88 (93)
T 3dr0_A 64 AMPAFGGRLSDADIANVAAYIADQA 88 (93)
T ss_dssp TBCCCBTTBCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3335767899999999999999875
No 46
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=99.68 E-value=1.6e-17 Score=95.89 Aligned_cols=77 Identities=21% Similarity=0.349 Sum_probs=55.4
Q ss_pred HHHHHHHh-cCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCC----CCC
Q 033761 14 AGEKIFKT-KCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIP----GTK 88 (112)
Q Consensus 14 ~G~~lf~~-~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~----~~~ 88 (112)
+|++||.+ +|++||+.++. ..+|.|..+..+..+ +.++|..|+..+..... ...
T Consensus 2 ~G~~l~~~~~C~~CHg~~g~---g~gp~l~~l~~~~~~------------------~~~~l~~~~~~~~~~~~~~~~~~~ 60 (87)
T 2zxy_A 2 DGKAIFQQKGCGSCHQANVD---TVGPSLKKIAQAYAG------------------KEDQLIKFLKGEAPAIVDPAKEAI 60 (87)
T ss_dssp CHHHHHHHTTGGGTCCSSSC---SSSCCHHHHHHHTTT------------------CHHHHHHHHTTCSCCSSCGGGHHH
T ss_pred ChHHHHhcCCchhhcCCCCC---CCCCChHHHHHHhcC------------------CHHHHHHHHhcccccccCCCCCCC
Confidence 69999998 79999998764 357888766443211 35688888877654322 134
Q ss_pred C-CC---CCCCCHHHHHHHHHHHHhcc
Q 033761 89 M-VF---PGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 89 m-~~---~~~ls~~e~~~l~ayl~~l~ 111 (112)
| +| ...||++||++|++||++|+
T Consensus 61 Mp~~~~~~~~ls~~ei~~l~~yl~sl~ 87 (87)
T 2zxy_A 61 MKPQLTMLKGLSDAELKALADFILSHK 87 (87)
T ss_dssp HGGGGGGGGGCCHHHHHHHHHHHHTC-
T ss_pred CCCccccccCCCHHHHHHHHHHHHhcC
Confidence 6 46 46789999999999999884
No 47
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=99.67 E-value=1.1e-17 Score=95.81 Aligned_cols=78 Identities=17% Similarity=0.208 Sum_probs=56.6
Q ss_pred HHHHHH-hcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCC-CCCCCC-C
Q 033761 15 GEKIFK-TKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYI-PGTKMV-F 91 (112)
Q Consensus 15 G~~lf~-~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~m~-~ 91 (112)
|++||. .+|++||+.++. ..||.|.++..+..+. ..+.++|..+|+++.... +...|| |
T Consensus 1 ~~~l~~~~~C~~CHg~~g~---~~gp~l~~~~~~~~~~---------------~~~~~~l~~~i~~g~~~~~~~~~Mp~~ 62 (81)
T 1a56_A 1 DADLAKKNNCIACHQVETK---VVGPALKDIAAKYADK---------------DDAATYLAGKIKGGSSGVWGQIPMPPN 62 (81)
T ss_dssp CHHHHHHHSHHHHBCSSCB---SSSCCHHHHHHHHTTS---------------SSHHHHHHHHHHHCBSSSSSSCCBCSC
T ss_pred CHhHHhccCchhhCCCCCC---cCCcCHHHHHHHhcCC---------------ccHHHHHHHHHHcCCCCCCCCCCCCCC
Confidence 578998 689999998764 3578888765332111 013779999998876543 224564 6
Q ss_pred CCCCCHHHHHHHHHHHHhcc
Q 033761 92 PGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 92 ~~~ls~~e~~~l~ayl~~l~ 111 (112)
..||++|+++|++||++|+
T Consensus 63 -~~Ls~~ei~~l~~yl~~lk 81 (81)
T 1a56_A 63 -VNVSDADAKALADWILTLK 81 (81)
T ss_dssp -CSSSSHHHHHHHHHHHHHC
T ss_pred -CCCCHHHHHHHHHHHHhCC
Confidence 6789999999999999975
No 48
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}
Probab=99.67 E-value=7.2e-18 Score=97.80 Aligned_cols=82 Identities=18% Similarity=0.258 Sum_probs=53.9
Q ss_pred CCccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCCCC
Q 033761 8 PPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGT 87 (112)
Q Consensus 8 ~~~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 87 (112)
..+++.+|+.||.++|++||+.++.|.. ..|++.+... .+ ..+.+.+...+.++. +.
T Consensus 5 ~~~~~~~G~~l~~~~C~~CHg~~~~g~~-~~~~l~~~~~-------------~~-----~~~~~~~~~~i~~G~----~~ 61 (87)
T 2zon_G 5 PAQLDPAGEKLYRSACVVCHASGVANAP-KLGDKQAWAP-------------FL-----AQGADALLATVLKGK----GA 61 (87)
T ss_dssp --CCCHHHHHHHHHTTHHHHTTTGGGCC-CTTCHHHHHH-------------HH-----HHCHHHHHHHHHHCB----TT
T ss_pred chhhhhHHHHHHHHHhHHHcCCCCCCCC-CCCCHHHHHH-------------HH-----hcCHHHHHHHHHcCc----CC
Confidence 4567889999999999999998754421 1233332100 00 013567777777654 22
Q ss_pred CCCCCC-CCCHHHHHHHHHHHHhccC
Q 033761 88 KMVFPG-LKKPQDRADLIAYLKQSTA 112 (112)
Q Consensus 88 ~m~~~~-~ls~~e~~~l~ayl~~l~~ 112 (112)
|++|.. .||++|+++|++||+++++
T Consensus 62 Mp~~~~~~ls~~ei~~l~~yl~~~~~ 87 (87)
T 2zon_G 62 MPPRGGTAADEATLRAAVAYMMDAAR 87 (87)
T ss_dssp BCGGGGCCCCHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcC
Confidence 335665 7899999999999999875
No 49
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=99.67 E-value=1.3e-16 Score=92.88 Aligned_cols=82 Identities=16% Similarity=0.300 Sum_probs=54.9
Q ss_pred ccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhc-ccccccHHHHHHHHhCCCCCCCCCC
Q 033761 10 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKN-MAVNWEEKTLYDYLLNPKKYIPGTK 88 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~ 88 (112)
+++++|++||..+|++||+.++.+. ..+|.+.. ..+.. ....++.+.|..+|.++. +.|
T Consensus 1 ~~~~~G~~l~~~~C~~CHg~~g~g~-~~~~~l~~---------------~~~~~~~~~~~~~~~l~~~i~~g~----~~M 60 (90)
T 1cyi_A 1 ADLALGAQVFNGNCAACHMGGRNSV-MPEKTLDK---------------AALEQYLDGGFKVESIIYQVENGK----GAM 60 (90)
T ss_dssp CCHHHHHHHHHHHTHHHHGGGCCSS-STTSCSSH---------------HHHHHHSTTCSSHHHHHHHHHHCB----TTB
T ss_pred CcHHHHHHHHHHHHHHhCCCCCCCC-CCCCCCCh---------------HHHHHHhcCCCCHHHHHHHHhcCC----CCC
Confidence 4688999999989999999875432 11233321 00100 001246788888888763 233
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcc
Q 033761 89 MVFPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 89 m~~~~~ls~~e~~~l~ayl~~l~ 111 (112)
++|...||++||++|++||+++.
T Consensus 61 p~~~~~ls~~ei~~l~~yl~~~~ 83 (90)
T 1cyi_A 61 PAWADRLSEEEIQAVAEYVFKQA 83 (90)
T ss_dssp CCCTTTSCHHHHHHHHHHHHHHH
T ss_pred CcccccCCHHHHHHHHHHHHhcc
Confidence 35777799999999999999875
No 50
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=99.67 E-value=3.4e-17 Score=93.65 Aligned_cols=76 Identities=16% Similarity=0.209 Sum_probs=55.3
Q ss_pred HHHH-hcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCCC-CCCCCCCC
Q 033761 17 KIFK-TKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPG-TKMVFPGL 94 (112)
Q Consensus 17 ~lf~-~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~m~~~~~ 94 (112)
+||. .+|++||+.++. ..||+|.++..+... ..|+.++|..+|+++.....+ ..||.. .
T Consensus 3 ~l~~~~~C~~CHg~~g~---g~gP~l~~~~~~~~~---------------~~~~~~~l~~~i~~g~~~~~~~~~Mp~~-~ 63 (80)
T 1ayg_A 3 QLAKQKGCMACHDLKAK---KVGPAYADVAKKYAG---------------RKDAVDYLAGKIKKGGSGVWGSVPMPPQ-N 63 (80)
T ss_dssp TTTTSSSSGGGCCSSCC---SSSCCHHHHHHHCSS---------------CTTHHHHHHHHHHSCBCSSSCSCCBCCC-C
T ss_pred hhHhhCCchhhcCCCCC---CCCCChHHHHHHhcC---------------CccHHHHHHHHHHcCCCCCCCCCCCCCC-C
Confidence 5776 469999998764 368999876544321 124678999999998764433 337544 6
Q ss_pred CCHHHHHHHHHHHHhcc
Q 033761 95 KKPQDRADLIAYLKQST 111 (112)
Q Consensus 95 ls~~e~~~l~ayl~~l~ 111 (112)
||++||++|++||++|+
T Consensus 64 Lsd~ei~~l~~yl~~lk 80 (80)
T 1ayg_A 64 VTDAEAKQLAQWILSIK 80 (80)
T ss_dssp CCHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 89999999999999985
No 51
>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0
Probab=99.65 E-value=1.1e-16 Score=95.24 Aligned_cols=80 Identities=20% Similarity=0.324 Sum_probs=53.5
Q ss_pred CccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCCCCC
Q 033761 9 PGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTK 88 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 88 (112)
..++.+|++||..+|++||+.++. ..+|.... ..+.+..... .+.+.|..+|+++. +.|
T Consensus 16 ~~~~~~G~~ly~~~Ca~CHg~~g~---~~~p~~~~-------------~~~~l~~~~~-~~~~~l~~~i~~G~----~~M 74 (99)
T 3dp5_A 16 AVPNSGGGELFATHCAGCHPQGGN---TVHPEKTL-------------ARARREANGI-RTVRDVAAYIRNPG----PGM 74 (99)
T ss_dssp CCCCCCHHHHHHHHTTTTSGGGCC---SSSTTCCC-------------CHHHHHHTTC-CSHHHHHHHTTSCC----TTS
T ss_pred cccHHHHHHHHHHHHHHhCCCCCC---CCCCCCcc-------------ChHHHHhcCc-cCHHHHHHHHHcCC----CCC
Confidence 456788999999999999998652 22341110 0111111111 36788999998873 333
Q ss_pred CCCCC-CCCHHHHHHHHHHHHh
Q 033761 89 MVFPG-LKKPQDRADLIAYLKQ 109 (112)
Q Consensus 89 m~~~~-~ls~~e~~~l~ayl~~ 109 (112)
++|.. .||++||++|++||++
T Consensus 75 P~~~~~~Lsd~ei~~l~~Yi~~ 96 (99)
T 3dp5_A 75 PAFGEAMIPPADALKIGEYVVA 96 (99)
T ss_dssp CCCCTTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH
Confidence 45776 7999999999999986
No 52
>2yev_B Cytochrome C oxidase subunit 2; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Probab=99.42 E-value=3.3e-17 Score=116.29 Aligned_cols=88 Identities=27% Similarity=0.434 Sum_probs=68.6
Q ss_pred HHHHHHHHHhcCCccccCcCCCC-CCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCCCCCCC
Q 033761 12 AKAGEKIFKTKCAQCHTVEKGAG-HKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMV 90 (112)
Q Consensus 12 ~~~G~~lf~~~C~~CH~~~~~g~-~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m~ 90 (112)
.++|+++|+++|++||+.++.|. +..||+|+++..+.... .....|+.++|.++|+++....+++.||
T Consensus 236 ~~~G~~lf~~~Ca~CHg~~g~G~~~~~gP~L~gi~~r~~~~-----------~G~~~~~~~~L~~~I~~g~~~~~~~~MP 304 (337)
T 2yev_B 236 DERGQQVFQQNCAACHGVARSMPPAVIGPELGLWGNRTSLG-----------AGIVENTPENLKAWIRDPAGMKPGVKMP 304 (337)
Confidence 38999999999999999987653 35789999875543211 0112357889999999998777777886
Q ss_pred -CCCCCCHHHHHHHHHHHHhcc
Q 033761 91 -FPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 91 -~~~~ls~~e~~~l~ayl~~l~ 111 (112)
| ..||++|+++|++||++|+
T Consensus 305 ~~-~~LsdeEi~aL~aYL~sL~ 325 (337)
T 2yev_B 305 GF-PQLSEEDLDALVRYLEGLK 325 (337)
Confidence 6 7789999999999999986
No 53
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=99.61 E-value=1.3e-15 Score=106.92 Aligned_cols=83 Identities=17% Similarity=0.170 Sum_probs=63.0
Q ss_pred CccHHHHHHHHHhcCCccccCcCCCCCCC-CCCccc-ccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCCC
Q 033761 9 PGNAKAGEKIFKTKCAQCHTVEKGAGHKQ-GPNLNG-LFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPG 86 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~~g~~~~-gP~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 86 (112)
.+++++|++||..+|++||+.++.|.... +|+|++ ..... ..+.++|.+.|.++.. +
T Consensus 219 ~~~~~~G~~lf~~~Ca~CHg~~g~G~~~~~~P~L~~~~~~~~------------------~~~~~~l~~~i~~g~~---g 277 (311)
T 3mk7_C 219 DADLSAGKNVYAQTCAVCHGQGGEGMAALGAPKLNSAAGWIY------------------GSSLGQLQQTIRHGRN---G 277 (311)
T ss_dssp CCCHHHHHHHHHHTTHHHHCTTSCCBTTTTBCCSSCGGGCSS------------------CCSHHHHHHHHHHCBC---C
T ss_pred cccchhhHHHHhhhHHhcCCCCCCCCcccCCCCCCcchhhhc------------------cCCHHHHHHHHHhCcc---c
Confidence 47889999999999999999988765444 688886 21110 0257899999987642 3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhccC
Q 033761 87 TKMVFPGLKKPQDRADLIAYLKQSTA 112 (112)
Q Consensus 87 ~~m~~~~~ls~~e~~~l~ayl~~l~~ 112 (112)
.|+++...||++|+++|++||++|+.
T Consensus 278 ~MP~~~~~Ls~~ei~~laaYl~sl~~ 303 (311)
T 3mk7_C 278 QMPAQQQYLGDDKVHLLAAYVYSLSQ 303 (311)
T ss_dssp EECCCTTTTHHHHHHHHHHHHHHHCC
T ss_pred cCcccccCCCHHHHHHHHHHHHHcCC
Confidence 34457778999999999999999863
No 54
>1mz4_A Cytochrome C550; PSII associated cytochrome, electron transport; HET: HEM; 1.80A {Thermosynechococcus elongatus} SCOP: a.3.1.1 PDB: 1izl_V* 1s5l_V* 2axt_V* 3a0b_V* 3a0h_V* 3arc_V* 3bz1_V* 3bz2_V* 3kzi_V* 3prq_V* 3prr_V*
Probab=99.60 E-value=4.9e-16 Score=97.19 Aligned_cols=85 Identities=20% Similarity=0.271 Sum_probs=55.4
Q ss_pred CccHHHHHHHHHhcCCccccCcCCCCCCCCCCcc--cccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCC--
Q 033761 9 PGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLN--GLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYI-- 84 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-- 84 (112)
.+++++|++||..+|++||+.++.+... +|.+. .+.+. .+ ..|+.++|..+|.+|..+.
T Consensus 23 ~~~~~~G~~ly~~~Ca~CHg~~g~g~~~-~~~l~~~~l~~~----~p------------~~~~~~~l~~~l~~p~~~~~~ 85 (137)
T 1mz4_A 23 EKQYLEGKRLFQYACASCHVGGITKTNP-SLDLRTETLALA----TP------------PRDNIEGLVDYMKNPTTYDGE 85 (137)
T ss_dssp HHHHHHHHHHHHHHTHHHHGGGCCTTCG-GGCCCHHHHHTS----SS------------CCSSHHHHHHHHHSCBCTTSS
T ss_pred hHHHHHHHHHHHhhhHHhcCCCCCCCCC-CccccccccccC----CC------------chhHHHHHHHHHhCchhhccc
Confidence 4577899999999999999987643211 11111 11110 00 0235789999998854321
Q ss_pred -----------CCCCCC-CCCCCCHHHHHHHHHHHHhcc
Q 033761 85 -----------PGTKMV-FPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 85 -----------~~~~m~-~~~~ls~~e~~~l~ayl~~l~ 111 (112)
....|| | ..||++||++|++||+++.
T Consensus 86 ~~~~~~~~~~~~~~~MP~~-~~Lsd~ei~alaaYl~~~~ 123 (137)
T 1mz4_A 86 QEIAEVHPSLRSADIFPKM-RNLTEKDLVAIAGHILVEP 123 (137)
T ss_dssp SBCTTTSCCGGGTTTSGGG-TTCCHHHHHHHHHHHHHHH
T ss_pred chhhhcccccccCCCCCCC-CCCCHHHHHHHHHHHHHcc
Confidence 234564 6 4589999999999999875
No 55
>1w5c_T Cytochrome C-550; photosynthesis, water oxidation, photosystem, membrane protein; HET: CL1 CLA PHO HEM HEC BCR; 3.2A {Thermosynechococcus elongatus} SCOP: i.5.1.1
Probab=99.59 E-value=8.3e-16 Score=98.83 Aligned_cols=87 Identities=20% Similarity=0.271 Sum_probs=55.5
Q ss_pred CccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCC-----
Q 033761 9 PGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKY----- 83 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----- 83 (112)
.+++++|++||..+|++||+.++.+. +|.+........+..+. .++.++|..+++++...
T Consensus 49 ~~~~~~G~~lf~~~Ca~CHg~~g~g~---~p~~~l~~~~l~g~~p~------------~~~~~~l~~~l~~~~~~~g~~~ 113 (163)
T 1w5c_T 49 EKQYLEGKRLFQYACASCHVGGITKT---NPSLDLRTETLALATPP------------RDNIEGLVDYMKNPTTYDGEQE 113 (163)
T ss_dssp HHHHHHHHHHHHHHTHHHHGGGCCSS---STTSCCCHHHHHTSSSC------------CSSHHHHHHHHHSCBCTTSSSB
T ss_pred HHHHHHHHHHHHHhhHHhCCCCCCCC---CCCcCCCchhhccCCCC------------cccHHHHHHHHhCccccccchh
Confidence 45678999999999999999765432 33221000000000000 12577899999886431
Q ss_pred --------CCCCCCC-CCCCCCHHHHHHHHHHHHhcc
Q 033761 84 --------IPGTKMV-FPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 84 --------~~~~~m~-~~~~ls~~e~~~l~ayl~~l~ 111 (112)
.....|| | ..|||+|+++|++||++++
T Consensus 114 ~~~~~~~~~~~~~Mp~~-~~Lsd~ei~~laaYl~sl~ 149 (163)
T 1w5c_T 114 IAEVHPSLRSADIFPKM-RNLTEKDLVAIAGHILVEP 149 (163)
T ss_dssp CTTTSCCSTTTTTSGGG-TTCCHHHHHHHHHHHHHHH
T ss_pred hhhccccccccCcCCCC-CCCCHHHHHHHHHHHHHcc
Confidence 1123564 6 6789999999999999875
No 56
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*
Probab=99.58 E-value=2.5e-16 Score=90.37 Aligned_cols=78 Identities=12% Similarity=0.144 Sum_probs=49.2
Q ss_pred cHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCCCCCCC
Q 033761 11 NAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMV 90 (112)
Q Consensus 11 ~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m~ 90 (112)
++.+|+.||..+|++||+.++.| +|.+..+... .+.+. -+.++|...+.++.. .|++
T Consensus 2 ~~~~G~~ly~~~Ca~CHg~~~~g----~p~~~~~~~~----------~~~l~-----~~~~~l~~~i~~G~~----~Mp~ 58 (81)
T 1kx2_A 2 DLQDAEAIYNKACTVCHSMGVAG----APKSHNTADW----------EPRLA-----KGVDNLVKSVKTGLN----AMPP 58 (81)
T ss_dssp CCSCHHHHHHHSTTSSTTTTGGG----CCCTTCSTTT----------HHHHT-----TCSTTHHHHHHHTCT----TSCG
T ss_pred ccccHHHHHHHHHHHHcCCCCCC----CCCCCChhhh----------hhhhh-----cCHHHHHHHHHhCcC----CCCC
Confidence 34579999999999999975433 3555432110 00000 023466667766542 2334
Q ss_pred CCC--CCCHHHHHHHHHHHHhcc
Q 033761 91 FPG--LKKPQDRADLIAYLKQST 111 (112)
Q Consensus 91 ~~~--~ls~~e~~~l~ayl~~l~ 111 (112)
|.. .|||+||++|++||++++
T Consensus 59 ~~~~~~Lsd~ei~~l~~Yi~~~~ 81 (81)
T 1kx2_A 59 GGMCTDCTDEDYKAAIEFMSKAK 81 (81)
T ss_dssp GGGCSSCCHHHHHHHHHHHTSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcC
Confidence 543 689999999999999874
No 57
>1c52_A Cytochrome-C552; electron transport protein, MAD, thermostability; HET: HEM; 1.28A {Thermus thermophilus} SCOP: a.3.1.1 PDB: 1qyz_A* 1r0q_A* 2fwl_A* 1foc_A* 1dt1_A*
Probab=99.58 E-value=2.9e-16 Score=97.66 Aligned_cols=81 Identities=22% Similarity=0.206 Sum_probs=57.4
Q ss_pred HHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCC-------CCC
Q 033761 14 AGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKY-------IPG 86 (112)
Q Consensus 14 ~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-------~~~ 86 (112)
+|+.||.. |++||+.++.|....+|+|.+...... ....+.++|..+|.++... ..+
T Consensus 3 ~G~~ly~~-Ca~CHg~~g~G~~~~~P~L~~~~~~~~---------------~~~~~~~~l~~~i~~g~~g~~~~~g~~~~ 66 (131)
T 1c52_A 3 DGAKIYAQ-CAGCHQQNGQGIPGAFPPLAGHVAEIL---------------AKEGGREYLILVLLYGLQGQIEVKGMKYN 66 (131)
T ss_dssp CHHHHTHH-HHHHHCTTSCCBTTTBCCCTTHHHHHH---------------TSTTHHHHHHHHHHHCEEEEEEETTEEEE
T ss_pred cHHHHHHH-HHHhcCCCCCCCCCCCCCCCCCccccc---------------cccCCHHHHHHHHHhcccccccccCCccC
Confidence 69999999 999999988765556788876421000 0012577999999876421 113
Q ss_pred CCCC-CCCCCCHHHHHHHHHHHHhcc
Q 033761 87 TKMV-FPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 87 ~~m~-~~~~ls~~e~~~l~ayl~~l~ 111 (112)
..|| |. .||++||++|++||+++.
T Consensus 67 ~~MP~~~-~Lsd~ei~~l~~Yl~~~~ 91 (131)
T 1c52_A 67 GVMSSFA-QLKDEEIAAVLNHIATAW 91 (131)
T ss_dssp EEECCCT-TSCHHHHHHHHHHHHHTT
T ss_pred CCCCCcc-cCCHHHHHHHHHHHHHHc
Confidence 4564 66 889999999999999874
No 58
>1m70_A Cytochrome C4; electron transport, diheme protein; HET: HEC; 1.25A {Pseudomonas stutzeri} SCOP: a.3.1.4 a.3.1.4 PDB: 1etp_A* 1m6z_A*
Probab=99.58 E-value=4.4e-16 Score=101.75 Aligned_cols=83 Identities=25% Similarity=0.377 Sum_probs=57.7
Q ss_pred CccHHHHHHHHHh--------cCCccccCcCCCCCC-CCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhC
Q 033761 9 PGNAKAGEKIFKT--------KCAQCHTVEKGAGHK-QGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLN 79 (112)
Q Consensus 9 ~~~~~~G~~lf~~--------~C~~CH~~~~~g~~~-~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 79 (112)
.+++++|+.||.. +|++||+.++.|... .+|+|.+... .|..+.|..|...
T Consensus 97 ~~~~~~G~~l~~~~~~~~~~~~C~~CHg~~g~g~~~~~~P~L~g~~~--------------------~~~~~~l~~~~~g 156 (190)
T 1m70_A 97 PALAKQGEKLFRGGKLDQGMPACTGCHAPNGVGNDLAGFPKLGGQHA--------------------AYTAKQLTDFREG 156 (190)
T ss_dssp HHHHHHHHHHHHHCBGGGTBCCSHHHHCTTSCCBGGGTBCCCTTCCH--------------------HHHHHHHHHHHHT
T ss_pred ccchhhHHHHHhCCCcccCCcchhhcCCCCCCCCCCCCCCCcCCCCH--------------------HHHHHHHHHHHhC
Confidence 3567899999998 899999998766433 4688875411 1234455555544
Q ss_pred CCCCCCCC-CCC-CCCCCCHHHHHHHHHHHHhcc
Q 033761 80 PKKYIPGT-KMV-FPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 80 ~~~~~~~~-~m~-~~~~ls~~e~~~l~ayl~~l~ 111 (112)
.+...+.. .|| |...||++||++|++||++|+
T Consensus 157 ~~~~~~~~~~Mp~~~~~Ls~~ei~~l~~Yl~sl~ 190 (190)
T 1m70_A 157 NRTNDGDTMIMRGVAAKLSNKDIEALSSYIQGLH 190 (190)
T ss_dssp SCCTTTTTCHHHHHHTTCCHHHHHHHHHHHHTCC
T ss_pred CCCCCCccccHHHHHHhCCHHHHHHHHHHHHhCc
Confidence 33333333 575 767799999999999999985
No 59
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=99.57 E-value=2.2e-15 Score=85.83 Aligned_cols=73 Identities=23% Similarity=0.392 Sum_probs=51.1
Q ss_pred HHHHHHHh----cCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCCCCCC
Q 033761 14 AGEKIFKT----KCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKM 89 (112)
Q Consensus 14 ~G~~lf~~----~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m 89 (112)
.|++||.+ +|++||+.++.| +|.|...... ... ..+.+.|...|+++. +.|+
T Consensus 1 ~G~~ly~~g~~~~C~~CHg~~g~g----~P~l~~~~~~--------------~~~--~~~~~~l~~~i~~G~----~~Mp 56 (78)
T 1gks_A 1 DGESIYINGTAPTCSSCHDRGVAG----APELNAPEDW--------------ADR--PSSVDELVESTLAGK----GAMP 56 (78)
T ss_dssp CHHHHHHTSSSSCSHHHHTTTGGG----CCCTTCHHHH--------------HTS--CCCHHHHHHHHHHCB----TTBC
T ss_pred CHHHHHhhccccchhhhCCCCCCC----CCCCCCHHHh--------------hhc--cCCHHHHHHHHHcCC----CCCC
Confidence 48999997 899999987643 5776542100 000 015778888887764 3344
Q ss_pred CCCCCCCHHHHHHHHHHHHhc
Q 033761 90 VFPGLKKPQDRADLIAYLKQS 110 (112)
Q Consensus 90 ~~~~~ls~~e~~~l~ayl~~l 110 (112)
+|...||++||++|++||+++
T Consensus 57 ~~~~~Lsd~ei~~l~~yi~~~ 77 (78)
T 1gks_A 57 AYDGRADREDLVKAIEYMLST 77 (78)
T ss_dssp CCBTTBCHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHhh
Confidence 677789999999999999864
No 60
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.56 E-value=2e-15 Score=114.99 Aligned_cols=83 Identities=19% Similarity=0.297 Sum_probs=66.2
Q ss_pred CCCccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCCC
Q 033761 7 APPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPG 86 (112)
Q Consensus 7 ~~~~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 86 (112)
...+++++|++||.++|++||+.++.+....+|+|.++.. ++.++|.++|+++....+
T Consensus 588 ~~~~~~~~G~~l~~~~C~~CHg~~g~g~~~~~P~L~~~~~---------------------~~~~~l~~~i~~g~~~~~- 645 (677)
T 1kb0_A 588 YDPAKVEAGTMLYVANCVFCHGVPGVDRGGNIPNLGYMDA---------------------SYIENLPNFVFKGPAMVR- 645 (677)
T ss_dssp CCGGGHHHHHHHHHHHTHHHHCSTTTSCCSSSCCGGGSCH---------------------HHHHTHHHHHSSCTTGGG-
T ss_pred CChhhHHHHHHHHhhhhhhhCCCCCcCCCCCCCCccccCc---------------------ccHHHHHHHHHcCCCCCC-
Confidence 3456789999999999999999988775677899987532 257799999998875442
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcc
Q 033761 87 TKMVFPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 87 ~~m~~~~~ls~~e~~~l~ayl~~l~ 111 (112)
.|++|...||++||++|++||++|+
T Consensus 646 ~Mp~~~~~ls~~ei~~l~~Yl~~l~ 670 (677)
T 1kb0_A 646 GMPDFTGKLSGDDVESLKAFIQGTA 670 (677)
T ss_dssp TCCCCTTTSCTTHHHHHHHHHHHHH
T ss_pred CCCcccccCCHHHHHHHHHHHHhcc
Confidence 2445777799999999999999885
No 61
>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme; HET: HEM; 2.13A {Thiobacillus ferrooxidans} SCOP: a.3.1.4 a.3.1.4
Probab=99.56 E-value=7e-16 Score=100.23 Aligned_cols=79 Identities=23% Similarity=0.270 Sum_probs=55.8
Q ss_pred CCCccHHHHHHHHHh--------cCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHh
Q 033761 7 APPGNAKAGEKIFKT--------KCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLL 78 (112)
Q Consensus 7 ~~~~~~~~G~~lf~~--------~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 78 (112)
...+.+++|++||.. +|++||+.++.| ...+|+|.+. ...++..+|.
T Consensus 95 ~~~~~~~~G~~l~~~~~~~~~~~~C~~CHg~~g~g-~~~~P~L~~~------------------------~~~~~~~~l~ 149 (183)
T 1h1o_A 95 IKHAGAKEGKAIFNQGVTNEQIPACMECHGSDGQG-AGPFPRLAGQ------------------------RYGYIIQQLT 149 (183)
T ss_dssp CCCTTHHHHHHHHHHCBGGGTBCCTHHHHCTTSCC-BTTBCCCTTC------------------------CHHHHHHHHH
T ss_pred CchhhHHhHHHHHHcCCcccCCCcchhhCCCCCCC-CCCCCCCCCC------------------------CHHHHHHHHH
Confidence 345678999999998 899999998776 4556877753 2345555553
Q ss_pred CCCC-CCCCCCC-CCCCCCCHHHHHHHHHHHHhc
Q 033761 79 NPKK-YIPGTKM-VFPGLKKPQDRADLIAYLKQS 110 (112)
Q Consensus 79 ~~~~-~~~~~~m-~~~~~ls~~e~~~l~ayl~~l 110 (112)
+... ...+..| +|...||++||++|++||++|
T Consensus 150 ~~~~g~~~~~~Mp~~~~~Ls~~ei~~l~~yl~sl 183 (183)
T 1h1o_A 150 YFHNGTRVNTLMNQIAKNITVAQMKDVAAYLSSL 183 (183)
T ss_dssp HHHHTSSCCHHHHHHHTTCCHHHHHHHHHHHHHC
T ss_pred HHHcCCCCCcchHHHHHhCCHHHHHHHHHHHHhC
Confidence 3211 1122456 576679999999999999986
No 62
>3mk7_B Cytochrome C oxidase, CBB3-type, subunit O; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=99.56 E-value=3.1e-15 Score=98.24 Aligned_cols=83 Identities=23% Similarity=0.504 Sum_probs=61.5
Q ss_pred CccHHHHHHHHHh-cCCcccc--CcCC------------------------CCCCCCCCcccccCCccccCCCCCCchhh
Q 033761 9 PGNAKAGEKIFKT-KCAQCHT--VEKG------------------------AGHKQGPNLNGLFGRQSGTTPGYSYSAAN 61 (112)
Q Consensus 9 ~~~~~~G~~lf~~-~C~~CH~--~~~~------------------------g~~~~gP~l~~~~~~~~~~~~~~~~~~~~ 61 (112)
++.+.+|+.+|.+ .|..||+ +++. |.+..||+|+.+.++
T Consensus 50 t~~~~~Gr~iy~~eGC~~CHsQ~VR~~~~e~~r~G~~S~a~e~~yd~p~l~Gsgr~GPDLt~vG~R-------------- 115 (203)
T 3mk7_B 50 TALQLEGRDLYIREGCVGCHSQMIRPFRAETERYGHYSVAGESVYDHPFLWGSKRTGPDLARVGGR-------------- 115 (203)
T ss_dssp CHHHHHHHHHHHHHTGGGTCCCCCCSSHHHHHHHSSCCCGGGGTTCSSCCCCSBCSSCCCTTCTTT--------------
T ss_pred CHHHHHHHHHHHHCChhhccCCCCCCCchhhhcccccccchhhhhccccccCCCCCCcChhhhhcc--------------
Confidence 5567799999975 5999999 5442 124556666665544
Q ss_pred hcccccccHHHHHHHHhCCCCCCCCCCCC-CCC------------------------------------CCCHHHHHHHH
Q 033761 62 KNMAVNWEEKTLYDYLLNPKKYIPGTKMV-FPG------------------------------------LKKPQDRADLI 104 (112)
Q Consensus 62 ~~~~~~~~~~~l~~~l~~~~~~~~~~~m~-~~~------------------------------------~ls~~e~~~l~ 104 (112)
++.+++.+||.+|+...|++.|| |.. +++..|+++||
T Consensus 116 ------~s~~wl~~~I~dPq~v~PGS~MPay~~L~~~~~~~~~~~~~~~~l~~~gvpy~~~~i~~a~~~~~~~~e~~alv 189 (203)
T 3mk7_B 116 ------YSDDWHRAHLYNPRNVVPESKMPSYPWLVENTLDGKDTAKKMSALRMLGVPYTEEDIAGARDSVNGKTEMDAMV 189 (203)
T ss_dssp ------SCHHHHHHHHHCHHHHSTTCCCCCCTHHHHCBCCCTTHHHHHHHHHHTTCCCCHHHHTTSHHHHTTCBHHHHHH
T ss_pred ------CCHHHHHHHHhCccccCCCCCCCCCccccccccchHHHHHHHHHHHhcCCCCCHHHHHhHHHHhcchhHHHHHH
Confidence 47889999999999999999887 430 12346889999
Q ss_pred HHHHhcc
Q 033761 105 AYLKQST 111 (112)
Q Consensus 105 ayl~~l~ 111 (112)
+||.+|.
T Consensus 190 AYLq~Lg 196 (203)
T 3mk7_B 190 AYLQVLG 196 (203)
T ss_dssp HHHTTTT
T ss_pred HHHHHhC
Confidence 9999885
No 63
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1
Probab=99.51 E-value=1.8e-15 Score=87.29 Aligned_cols=79 Identities=11% Similarity=0.087 Sum_probs=47.3
Q ss_pred cHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCCCCCCC
Q 033761 11 NAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMV 90 (112)
Q Consensus 11 ~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m~ 90 (112)
.+..|++||.++|++||+.++.| +|.+...... .+.+.. ..+.+.|...+.++. +.|++
T Consensus 3 ~~~~G~~ly~~~Ca~CHg~~~~G----~p~~~~~~~~----------~~~l~~---~~~~~~l~~~i~~G~----~~MP~ 61 (83)
T 1cc5_A 3 GARSGDDVVAKYCNACHGTGLLN----APKVGDSAAW----------KTRADA---KGGLDGLLAQSLSGL----NAMPP 61 (83)
T ss_dssp CSSCSHHHHHHTTHHHHTTTTTT----CCCTTCHHHH----------HHHHHH---HTSSTTTHHHHHHCB----TTBCS
T ss_pred hhHHHHHHHHHHHHHHCcCCCCC----CCCCCCHHHH----------HHHhhc---ccCHHHHHHHHHcCc----cCCCC
Confidence 34579999999999999975432 3554432100 000000 001234555666554 23445
Q ss_pred CCC--CCCHHHHHHHHHHHHhc
Q 033761 91 FPG--LKKPQDRADLIAYLKQS 110 (112)
Q Consensus 91 ~~~--~ls~~e~~~l~ayl~~l 110 (112)
|.. .|||+||++|++||+++
T Consensus 62 ~~~~~~Lsd~ei~~v~~yi~~~ 83 (83)
T 1cc5_A 62 KGTCADCSDDELKAAIGKMSGL 83 (83)
T ss_dssp SSSCSSCCHHHHHHHHHHHHCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhC
Confidence 765 69999999999999864
No 64
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.50 E-value=1.1e-14 Score=110.78 Aligned_cols=80 Identities=16% Similarity=0.254 Sum_probs=61.7
Q ss_pred CccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCCCCC
Q 033761 9 PGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTK 88 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 88 (112)
.+++++|++||.++|+.||+.++.| ...+|+|.+... ++.+.+...|+++..... .|
T Consensus 577 ~~~~~~G~~l~~~~Ca~CHg~~g~g-~~~~P~L~~~~~---------------------~~~~~~~~~i~~G~~~~~-~M 633 (668)
T 1kv9_A 577 PEQVQAGKQLYGQFCSVCHGMGTIS-GGLIPDLRQSSD---------------------ATREHFQQIVLQGALKPL-GM 633 (668)
T ss_dssp HHHHHHHHHHHHHHTHHHHCGGGCC-CSSSCCGGGCCH---------------------HHHHTHHHHHHHCTTGGG-TC
T ss_pred HHHHHHHHHHHhhhhHhhCcCCCcC-CCCCCCCcCCCC---------------------CCHHHHHHHHHhCCCCCC-CC
Confidence 4567899999999999999998876 567898886421 146677888887654322 24
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcc
Q 033761 89 MVFPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 89 m~~~~~ls~~e~~~l~ayl~~l~ 111 (112)
++|...||++||++|++||++|.
T Consensus 634 p~~~~~ls~~ei~~l~~yl~~~~ 656 (668)
T 1kv9_A 634 PSFDDSLKPEEVEQIKLYVMSRE 656 (668)
T ss_dssp CCCTTTCCHHHHHHHHHHHHHHH
T ss_pred CccccCCCHHHHHHHHHHHHhcc
Confidence 45877899999999999999875
No 65
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.50 E-value=1.6e-14 Score=110.26 Aligned_cols=78 Identities=21% Similarity=0.365 Sum_probs=61.6
Q ss_pred CccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCCCCC
Q 033761 9 PGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTK 88 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 88 (112)
.+++++|++||.++|+.||+.++.| ...+|+|.+... ++.+.|..+|+++... ..
T Consensus 592 ~~~~~~G~~ly~~~Ca~CHg~~g~g-~~~~P~L~~~~~---------------------~~~~~~~~~i~~G~~~---~~ 646 (689)
T 1yiq_A 592 TASIEAGAKLYDGYCSQCHGIHAVS-GGVLPDLRKLTP---------------------EKHQMFLGILFGGRVP---DG 646 (689)
T ss_dssp HHHHHHHHHHHHHHTHHHHCGGGCC-CSSSCCTTSCCH---------------------HHHHTHHHHHTTTTGG---GT
T ss_pred HHHHHHHHHHHhhhhhhhCCCCCcC-CCCCCCcccCCc---------------------CCHHHHHHHHHcCCCC---CC
Confidence 4567899999999999999998876 566788875421 2577888888887643 34
Q ss_pred C-CCCCCCCHHHHHHHHHHHHhcc
Q 033761 89 M-VFPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 89 m-~~~~~ls~~e~~~l~ayl~~l~ 111 (112)
| +|...||++||++|++||+++.
T Consensus 647 Mp~~~~~ls~~ei~~l~~Yl~~~~ 670 (689)
T 1yiq_A 647 MPSFADAFTPEQVDQIHQYLIKRA 670 (689)
T ss_dssp CCCCTTTCCHHHHHHHHHHHHHHH
T ss_pred CCccccCCCHHHHHHHHHHHHhcc
Confidence 5 5777799999999999999875
No 66
>2xts_B Cytochrome; oxidoreductase-electron transport complex, SOX system, sulfa oxidation, molybdenum cofactor, heme, electron transfer; HET: MTE HEC; 1.33A {Paracoccus pantotrophus}
Probab=99.50 E-value=3.7e-14 Score=94.44 Aligned_cols=89 Identities=24% Similarity=0.343 Sum_probs=57.1
Q ss_pred CCccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHH-HHHHHHhCCCCCCCC
Q 033761 8 PPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEK-TLYDYLLNPKKYIPG 86 (112)
Q Consensus 8 ~~~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~ 86 (112)
..+++.+|+.||.++|++||+.++.|. ..+|.|.+........ ......+..|... .+...+. +
T Consensus 31 ~~~~~~~G~~Ly~~~Ca~CHG~~G~G~-~~~P~L~g~~~~l~~~-------~~~~~~g~~~~~~~~l~~~~~-------~ 95 (205)
T 2xts_B 31 GSGDVATGDALFADNCASCHGDFAEGL-DSWPVLAGGDGSLTDP-------RPVKTIGSYWPYLSTVYDYVH-------R 95 (205)
T ss_dssp CEEEHHHHHHHHHHHTHHHHCTTSSCS-TTSCCCSCCTTCTTSS-------SCCCCTTTTCCCHHHHHHHHH-------H
T ss_pred ChhhHHHHHHHHHhhhHHhCCCCCCCC-CCCCCccCCccccccc-------chhhhhccccchhHHHhccCc-------C
Confidence 357889999999999999999987653 3468887653221110 0011123334332 3433332 2
Q ss_pred CCC-CCCCCCCHHHHHHHHHHHHhcc
Q 033761 87 TKM-VFPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 87 ~~m-~~~~~ls~~e~~~l~ayl~~l~ 111 (112)
.|| +|...||++||++|++||+++.
T Consensus 96 ~MP~~~~~~LsdeEi~aL~aYl~sl~ 121 (205)
T 2xts_B 96 SMPFGSAQTLSVDDTYAITAFLLYSN 121 (205)
T ss_dssp HCSTTSCSCCCHHHHHHHHHHHHHHT
T ss_pred CCCcccccCCCHHHHHHHHHHHHhcc
Confidence 344 4667899999999999999885
No 67
>3vrd_A FCCA subunit, flavocytochrome C heme subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_C*
Probab=99.49 E-value=9e-15 Score=94.98 Aligned_cols=82 Identities=13% Similarity=0.151 Sum_probs=55.5
Q ss_pred CCCCccHHHHHHHHHhcCCccccCcCCCCC--CCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHh---CC
Q 033761 6 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGH--KQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLL---NP 80 (112)
Q Consensus 6 a~~~~~~~~G~~lf~~~C~~CH~~~~~g~~--~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---~~ 80 (112)
......+..|+.+|..+|++||+.+|.|.. ...|.|.+. ..++|...|. ++
T Consensus 84 ~~~~~~~~~g~~~~~~~Ca~CHg~~G~G~~~~~~~P~L~gq------------------------~~~yl~~~L~~~~~g 139 (174)
T 3vrd_A 84 SFDKALVAKGTKLHDKYCEKCHVESGKPLADQDEYHILAGQ------------------------WTPYLRYAIEDFRAE 139 (174)
T ss_dssp CCCGGGHHHHHHHHHHHTTTTSGGGGCCCTTCSSCCCCTTS------------------------CHHHHHHHHHHHHTT
T ss_pred ccchhhhccchhhhcchhHhhcCcCCCCCCCCCCCCccCCC------------------------CHHHHHHHHHHHHcC
Confidence 344567889999999999999999887643 224666543 2444544443 22
Q ss_pred CCCCC---CCCC-CCCCCCCHHHHHHHHHHHHhcc
Q 033761 81 KKYIP---GTKM-VFPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 81 ~~~~~---~~~m-~~~~~ls~~e~~~l~ayl~~l~ 111 (112)
..... ...| .|...|||+||++|++||.+++
T Consensus 140 ~r~~~~~~~~~M~~~a~~Lsd~eI~alaaY~~S~k 174 (174)
T 3vrd_A 140 RRPMEKKMASKLKELLKAEGEDGLDALFAFYASQQ 174 (174)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CcCCCCccchhhHHHHhhCCHHHHHHHHHHHHHcC
Confidence 22211 1246 4777799999999999999985
No 68
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.46 E-value=2.9e-14 Score=106.12 Aligned_cols=78 Identities=17% Similarity=0.306 Sum_probs=59.0
Q ss_pred CCccHHHHHHHHHhcCCccccCcCCCCCCCCCCccc-ccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCCC
Q 033761 8 PPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNG-LFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPG 86 (112)
Q Consensus 8 ~~~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 86 (112)
..+++++|++||.++|++||+.++.| ..||+|.. +..+ .+.++|..+|.++. ++
T Consensus 32 ~~~~~~~G~~l~~~~Ca~CHg~~g~g--~~~p~l~~~~~~~--------------------~~~~~l~~~i~~G~---~~ 86 (543)
T 1nir_A 32 SESEFNEAKQIYFQRCAGCHGVLRKG--ATGKPLTPDITQQ--------------------RGQQYLEALITYGT---PL 86 (543)
T ss_dssp CHHHHHHHHHHHHHHTHHHHTTTTCC--SSSSCCSHHHHHH--------------------HCHHHHHHHHHHCC---SS
T ss_pred ChhHHHHHHHHHhhhhHhhCCCCCCC--CCCCCCcchhccc--------------------CCHHHHHHHHHcCC---CC
Confidence 34567899999999999999988754 34788852 2111 15779999998864 24
Q ss_pred CCC-CCC--CCCCHHHHHHHHHHHHhcc
Q 033761 87 TKM-VFP--GLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 87 ~~m-~~~--~~ls~~e~~~l~ayl~~l~ 111 (112)
.| +|. ..||++||++|++||+++.
T Consensus 87 -~Mp~~~~~~~ls~~ei~~l~~yl~~~~ 113 (543)
T 1nir_A 87 -GMPNWGSSGELSKEQITLMAKYIQHTP 113 (543)
T ss_dssp -SCCCSTTTTSSCHHHHHHHHHHTTSCC
T ss_pred -CCCCcccccCCCHHHHHHHHHHHHhcc
Confidence 56 565 6899999999999999875
No 69
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.45 E-value=5e-14 Score=105.68 Aligned_cols=78 Identities=18% Similarity=0.270 Sum_probs=58.3
Q ss_pred CccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCCCCC
Q 033761 9 PGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTK 88 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 88 (112)
.+++++|++||.++|++||+.++.| ..||+|..... ..++.++|..+|+++.. + .
T Consensus 51 ~~~~~~G~~ly~~~Ca~CHg~~g~G--~~gp~L~~~~~-------------------~~~~~~~l~~~i~~G~~---~-~ 105 (567)
T 1qks_A 51 DAQYNEANKIYFERCAGCHGVLRKG--ATGKALTPDLT-------------------RDLGFDYLQSFITYASP---A-G 105 (567)
T ss_dssp HHHHHHHHHHHHHHTHHHHCTTSSC--SSSCCCCHHHH-------------------HHHCHHHHHHHHTTCCC---C-C
T ss_pred HHHHHHHHHHHhhhhHhhCCCCCCC--CCCCCCCchhh-------------------ccCCHHHHHHHHHhCCC---C-C
Confidence 3457899999999999999987754 45687753100 01257799999988642 3 5
Q ss_pred C-CCC--CCCCHHHHHHHHHHHHhcc
Q 033761 89 M-VFP--GLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 89 m-~~~--~~ls~~e~~~l~ayl~~l~ 111 (112)
| +|. ..||++||++|++||+++.
T Consensus 106 Mp~~~~~~~Lsd~ei~~l~~yi~~~~ 131 (567)
T 1qks_A 106 MPNWGTSGELSAEQVDLMANYLLLDP 131 (567)
T ss_dssp CTTTSCCCCCCHHHHHHHHHHHHSCC
T ss_pred CCCccccCCCCHHHHHHHHHHHhhcc
Confidence 6 575 7899999999999999875
No 70
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=99.44 E-value=3.2e-14 Score=99.89 Aligned_cols=80 Identities=16% Similarity=0.261 Sum_probs=59.1
Q ss_pred ccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCCCCCC
Q 033761 10 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKM 89 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m 89 (112)
+.+++|++||.++|++||+.++.|.. .+|+|.+..... ..+.++|..+|.++.. +.|+
T Consensus 130 ~~~~~G~~lf~~~Ca~CHg~~g~g~~-g~P~L~~~~~~~------------------g~~~~~l~~~i~~G~~---~~Mp 187 (311)
T 3mk7_C 130 QAVKMGARLFANYCSICHGSDAKGSL-GFPNLADQDWRW------------------GGDAASIKTSILNGRI---AAMP 187 (311)
T ss_dssp HHHHHHHHHHHHHTHHHHCTTSCCBT-TBCCSSSSCCSS------------------CCSHHHHHHHHHHCEE---CCBC
T ss_pred HHHHHHHHHHhhhHHHhCCCCCCCCC-CCCCCCCccccc------------------CCCHHHHHHHHHhCCc---CCCc
Confidence 34688999999999999999876543 258887642211 0157899999988742 3344
Q ss_pred CCCCCCCHHHHHHHHHHHHh-cc
Q 033761 90 VFPGLKKPQDRADLIAYLKQ-ST 111 (112)
Q Consensus 90 ~~~~~ls~~e~~~l~ayl~~-l~ 111 (112)
+|...||++|+++|++||++ ++
T Consensus 188 ~~~~~Ls~~ei~~laaYl~s~l~ 210 (311)
T 3mk7_C 188 AWGQAIGEEGVKNVAAFVRKDLA 210 (311)
T ss_dssp CCHHHHCHHHHHHHHHHHHHTTT
T ss_pred cccccCCHHHHHHHHHHHHhhcc
Confidence 57666899999999999998 74
No 71
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=99.44 E-value=3.1e-14 Score=103.83 Aligned_cols=82 Identities=13% Similarity=0.156 Sum_probs=57.7
Q ss_pred ccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCC---C--
Q 033761 10 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKY---I-- 84 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~-- 84 (112)
+++++|++||.++|++||+.++.|....+|+|.+.. . . ..+.+++..+++++... .
T Consensus 337 ~~~~~G~~ly~~~Ca~CHg~~g~g~~~~~P~L~~~~--~-------~----------~~~~~~~~~~i~~G~~~~~~~~g 397 (442)
T 2zoo_A 337 EQIRFGQRVYEANCMACHQANGEGIPGAFPPLAKSD--Y-------L----------NNNPLLGVNAIIKGLSGPIKVNN 397 (442)
T ss_dssp HHHHHHHHHHHHHTHHHHCTTSCCBTTTBCCCTTCH--H-------H----------HHCHHHHHHHHHHCEESCEEETT
T ss_pred hhhHHHHHHHHhhhHHhCCCCCCCCCCCCCCCCCcc--c-------c----------cCCHHHHHHHHHcCccccccccC
Confidence 457899999999999999998876555678887521 0 0 01355677777766432 0
Q ss_pred --CCCCCCCCCCCCHHHHHHHHHHHHhcc
Q 033761 85 --PGTKMVFPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 85 --~~~~m~~~~~ls~~e~~~l~ayl~~l~ 111 (112)
.+..||... ||++|+++|++||+++.
T Consensus 398 ~~~~~~MP~~~-Lsd~ei~~l~~Yl~~~~ 425 (442)
T 2zoo_A 398 VNYNGVMPAMN-LNDEDIANVITFVLNNW 425 (442)
T ss_dssp EEECCEECCCC-CCHHHHHHHHHHHHTST
T ss_pred CccCCCCCCCC-CCHHHHHHHHHHHHHhc
Confidence 124575333 89999999999999875
No 72
>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme; HET: HEM; 2.13A {Thiobacillus ferrooxidans} SCOP: a.3.1.4 a.3.1.4
Probab=99.41 E-value=1.6e-14 Score=93.83 Aligned_cols=82 Identities=17% Similarity=0.223 Sum_probs=45.8
Q ss_pred CccHHHHHHHHHhcCCccccCcCCCCC-CCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCC-CC
Q 033761 9 PGNAKAGEKIFKTKCAQCHTVEKGAGH-KQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYI-PG 86 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~~g~~-~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~ 86 (112)
++++.+|+.|| .+|++||+.++.+.. ..+|+|.+... .|..+.|..++...+... .+
T Consensus 3 ~~~~~~G~~l~-~~Ca~CHg~~g~g~~~~~~P~L~~~~~--------------------~~~~~~l~~~~~g~r~~~~~~ 61 (183)
T 1h1o_A 3 SADAPAPYRVS-SDCMVCHGMTGRDTLYPIVPRLAGQHK--------------------SYMEAQLKAYKDHSRADQNGE 61 (183)
T ss_dssp ---------CG-GGTHHHHCBTTBCCSSTTSCCCTTCCH--------------------HHHHHHHHHHHTTCCCCHHHH
T ss_pred cccHHHHHHHH-hHHHHhcCCCCCCCCCCCCCCCCCCCH--------------------HHHHHHHHHHHcCCCCCCCcc
Confidence 46788999999 899999999876543 45677765310 123334444433222100 02
Q ss_pred CCC-CCCCCCCHHHHHHHHHHHHhcc
Q 033761 87 TKM-VFPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 87 ~~m-~~~~~ls~~e~~~l~ayl~~l~ 111 (112)
..| +|...|+++|+++|++||+++.
T Consensus 62 ~~Mp~~~~~ls~~e~~al~~yl~~~~ 87 (183)
T 1h1o_A 62 IYMWPVAQALDSAKITALADYFNAQK 87 (183)
T ss_dssp HHTHHHHHTCCHHHHHHHHHHHHHCS
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHhCC
Confidence 346 4655689999999999999875
No 73
>3vrd_A FCCA subunit, flavocytochrome C heme subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_C*
Probab=99.40 E-value=6e-14 Score=91.07 Aligned_cols=71 Identities=20% Similarity=0.343 Sum_probs=51.0
Q ss_pred HHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCC-CCCCCCC-CCCCC
Q 033761 17 KIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKK-YIPGTKM-VFPGL 94 (112)
Q Consensus 17 ~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~m-~~~~~ 94 (112)
++|..+|++||+.+|.+.....|+|.+. +.++|..+|++... ...+..| ++...
T Consensus 5 ~~~a~~C~~CHg~~G~~~~~~~P~LaG~------------------------~~~~i~~~l~~~~~g~~~~~~M~~~~~~ 60 (174)
T 3vrd_A 5 EMLANNCAGCHGTRGNSAGPASPSIAQM------------------------DPAVFVEVMEQFKSGEIQSTIMGRIAKG 60 (174)
T ss_dssp HHHHGGGHHHHCGGGCCCCSSSCCCTTC------------------------CHHHHHHHHHHHHHTSSCCSSHHHHHTT
T ss_pred HHHHhhHHHhCCCcCCCCCCCCCCcCCC------------------------CHHHHHHHHHHhhcCCccccccchhhcc
Confidence 4556699999999887666667887653 46677777654321 2234456 56667
Q ss_pred CCHHHHHHHHHHHHhcc
Q 033761 95 KKPQDRADLIAYLKQST 111 (112)
Q Consensus 95 ls~~e~~~l~ayl~~l~ 111 (112)
||++||.+|++||.+++
T Consensus 61 Ls~~di~~la~Y~~s~~ 77 (174)
T 3vrd_A 61 YSTADFQKMAEYFKQQT 77 (174)
T ss_dssp SCHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHhhhhccc
Confidence 89999999999999875
No 74
>1m70_A Cytochrome C4; electron transport, diheme protein; HET: HEC; 1.25A {Pseudomonas stutzeri} SCOP: a.3.1.4 a.3.1.4 PDB: 1etp_A* 1m6z_A*
Probab=99.38 E-value=2.7e-13 Score=88.42 Aligned_cols=81 Identities=25% Similarity=0.291 Sum_probs=55.5
Q ss_pred ccHHHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCC------C
Q 033761 10 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKK------Y 83 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~ 83 (112)
+++++|+.| ..+|++||+.++.+....+|+|++... .|..+.|..++..... .
T Consensus 2 ~~~~~G~~l-~~~C~~CHg~~g~g~~~~~P~L~~~~~--------------------~~~~~~l~~~~~G~~~~~~~~~~ 60 (190)
T 1m70_A 2 GDAEAGQGK-VAVCGACHGVDGNSPAPNFPKLAGQGE--------------------RYLLKQLQDIKAGSTPGAPEGVG 60 (190)
T ss_dssp CCHHHHHTT-CGGGHHHHCTTSCCCCTTSCCCTTCCH--------------------HHHHHHHHHHHHHHSTTCCTTSS
T ss_pred cchhHHHHH-HhHHHhhcCCCCCCCCCCCCCCCCCCH--------------------HHHHHHHHHHHcCCccccccccC
Confidence 678999999 678999999988765556788875411 1344455554422110 0
Q ss_pred CCCCCC-CCCCCCCHHHHHHHHHHHHhcc
Q 033761 84 IPGTKM-VFPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 84 ~~~~~m-~~~~~ls~~e~~~l~ayl~~l~ 111 (112)
.....| +|...|+++|+++|++||+++.
T Consensus 61 ~~~~~Mp~~~~~ls~~e~~~l~~yl~~~~ 89 (190)
T 1m70_A 61 RKVLEMTGMLDPLSDQDLEDIAAYFSSQK 89 (190)
T ss_dssp CCCGGGTTTTTTCCHHHHHHHHHHHHHSC
T ss_pred CCCcchHHHHHHCCHHHHHHHHHHHHhCC
Confidence 224456 4667799999999999999875
No 75
>2blf_B SORB, sulfite\:cytochrome C oxidoreductase subunit B; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_B* 2c9x_B* 2ca3_B* 2ca4_B*
Probab=99.04 E-value=1.9e-10 Score=65.90 Aligned_cols=19 Identities=32% Similarity=0.781 Sum_probs=16.6
Q ss_pred HHHHHHHHHhcCCccccCc
Q 033761 12 AKAGEKIFKTKCAQCHTVE 30 (112)
Q Consensus 12 ~~~G~~lf~~~C~~CH~~~ 30 (112)
...|+.||.++|++||+..
T Consensus 18 ~~~G~~l~~~~C~~CH~~~ 36 (81)
T 2blf_B 18 PQPGFEAAQNNCAACHSVD 36 (81)
T ss_dssp SSTHHHHHHHHTTSSSCTH
T ss_pred CcchHHHHHHHHHHhcCCc
Confidence 3689999999999999864
No 76
>3oa8_A SOXA; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_A*
Probab=98.97 E-value=7.4e-11 Score=81.59 Aligned_cols=82 Identities=18% Similarity=0.242 Sum_probs=48.8
Q ss_pred cHHHHHHHHHh-------cCCccccCcCCCC-CC---CCCCcccccCCccccCCCCCCchhhhccccccc-HHHHHHHHh
Q 033761 11 NAKAGEKIFKT-------KCAQCHTVEKGAG-HK---QGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWE-EKTLYDYLL 78 (112)
Q Consensus 11 ~~~~G~~lf~~-------~C~~CH~~~~~g~-~~---~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~ 78 (112)
.++.|+.||.. +|++||+.++.+. .+ ..|.|..-.++ ..+ .+.|...+.
T Consensus 52 ~v~~G~~lf~~~~g~n~~~Ca~CHg~~G~g~~~G~~a~yP~l~~~~g~-------------------v~~L~~~I~~c~~ 112 (275)
T 3oa8_A 52 NVDRGEVLWSEPRGTRNVSLETCDLGEGPGKLEGAYAHLPRYFADTGK-------------------VMDLEQRLLWCME 112 (275)
T ss_dssp HHHHHHHHHTCCBTTTTBCSTTCBSSSSBTCCTTTGGGCSEEETTTTE-------------------EECHHHHHHHHHH
T ss_pred HHHHHHHHHcCcCCCCCCcccccCCccCCCcccChhhhCcCccccCCC-------------------HHHHHHHHHHHHH
Confidence 46889999986 6999999765432 11 13555432111 011 234444443
Q ss_pred CCCCCCC-CC-CCCCCCCCCHHHHHHHHHHHHhcc
Q 033761 79 NPKKYIP-GT-KMVFPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 79 ~~~~~~~-~~-~m~~~~~ls~~e~~~l~ayl~~l~ 111 (112)
....... +. |.|+...|+++||.+|++|+.+|+
T Consensus 113 ~~~g~~~~~~~M~p~~~~Ls~~di~~laaY~asls 147 (275)
T 3oa8_A 113 TIQGRDTKPLVAKPFSGPGRTSDMEDLVAFIANKS 147 (275)
T ss_dssp HTTCCCCHHHHHSCSCBTTBCCHHHHHHHHHHHTT
T ss_pred ccccccccccccccccccCCHHHHHHHHHHHHHcC
Confidence 3221110 11 337777789999999999999886
No 77
>1zzh_A Cytochrome C peroxidase; heme groups, oxidoreductase; HET: HEC; 2.70A {Rhodobacter capsulatus}
Probab=98.89 E-value=8.2e-09 Score=72.96 Aligned_cols=36 Identities=14% Similarity=0.267 Sum_probs=25.1
Q ss_pred cccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcc
Q 033761 67 NWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~~~~~m~~~~~ls~~e~~~l~ayl~~l~ 111 (112)
.++.+....+.... . +...||++|+++|++||++|+
T Consensus 268 ~~tL~evv~~y~~~-------~--~~~~Ls~~E~~~LvaFL~tLt 303 (328)
T 1zzh_A 268 VWDLREAVSVMANS-------Q--LGATLDDTQVDQITAFLGTLT 303 (328)
T ss_dssp BCCHHHHHHHHHSS-------T--TSCCCCHHHHHHHHHHHGGGC
T ss_pred cCCHHHHHHHhhcc-------c--cCCCCCHHHHHHHHHHHHHcC
Confidence 34666666665431 1 223589999999999999996
No 78
>3o5c_A Cytochrome C551 peroxidase; diheme cytochrome, hydrogen peroxide, oxidoreductase; HET: HEM; 1.80A {Shewanella oneidensis}
Probab=98.88 E-value=1.2e-09 Score=76.98 Aligned_cols=37 Identities=11% Similarity=0.243 Sum_probs=25.3
Q ss_pred ccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcc
Q 033761 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~~~~~m~~~~~ls~~e~~~l~ayl~~l~ 111 (112)
..++.+....++... .+...||++|+++|++||++|+
T Consensus 255 ~~~tL~evv~~~~~~---------~~~~~Ls~~E~~~LvaFL~sLt 291 (320)
T 3o5c_A 255 SVWTLEEAVNTMADI---------QLGQKLTEKETKEMVAFLNSLT 291 (320)
T ss_dssp CBCSHHHHHHHHHHH---------HHSCCCCHHHHHHHHHHHHTTC
T ss_pred CcCcHHHHHHHhccc---------ccccCCCHHHHHHHHHHHHHcC
Confidence 335666666554321 1233589999999999999997
No 79
>4aan_A Cytochrome C551 peroxidase; oxidoreductase, multiheme cytochromes, conformational rearra; HET: HEC; 1.22A {Geobacter sulfurreducens} PDB: 4aam_A* 4aal_A* 4aao_A*
Probab=98.82 E-value=3.4e-09 Score=75.20 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=24.9
Q ss_pred ccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcc
Q 033761 66 VNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~~~~~m~~~~~ls~~e~~~l~ayl~~l~ 111 (112)
..++.+...++...... + -.||++|+++||+||++|+
T Consensus 281 ~~~tLeevv~~y~~~~~-------~--~~Lt~~E~~~LvAFL~tLt 317 (341)
T 4aan_A 281 KVWKLKDAVKIMGSAQL-------G--ISITDADADKIVTFLNTLT 317 (341)
T ss_dssp CBCCHHHHHHHHHHHHH-------S--CCCCHHHHHHHHHHHHTTC
T ss_pred CcCCHHHHHHHHhccCc-------C--CCCCHHHHHHHHHHHHccC
Confidence 34566666665432110 1 1389999999999999997
No 80
>1iqc_A DI-heme peroxidase; proteobacteria, B subdivision, ammonia-oxidizing bacteria, oxidoreductase; HET: HEM; 1.80A {Nitrosomonas europaea} SCOP: a.3.1.5 a.3.1.5
Probab=98.80 E-value=1.7e-09 Score=75.92 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=19.0
Q ss_pred CCccHHHHHHHHHh-cCCccccCc
Q 033761 8 PPGNAKAGEKIFKT-KCAQCHTVE 30 (112)
Q Consensus 8 ~~~~~~~G~~lf~~-~C~~CH~~~ 30 (112)
.+.++.+|+.||.. .|++||+..
T Consensus 167 lt~~~~~G~~LF~~~gCa~CH~~~ 190 (308)
T 1iqc_A 167 LNQDELEGYNLFKGSGCVQCHNGP 190 (308)
T ss_dssp SCHHHHHHHHHHHHHTGGGTSCTT
T ss_pred CCHHHHHHHHHHcCCChhhcCCCc
Confidence 35677899999997 799999854
No 81
>1h32_A SOXA, diheme cytochrome C; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.8 a.3.1.8 PDB: 1h31_A* 1h33_A* 2oz1_A*
Probab=98.78 E-value=4e-10 Score=77.33 Aligned_cols=85 Identities=18% Similarity=0.174 Sum_probs=46.3
Q ss_pred ccHHHHHHHHHh-------cCCccccCcCCCCCCCCCCcc-cccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCC
Q 033761 10 GNAKAGEKIFKT-------KCAQCHTVEKGAGHKQGPNLN-GLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPK 81 (112)
Q Consensus 10 ~~~~~G~~lf~~-------~C~~CH~~~~~g~~~~gP~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 81 (112)
+++++|++||.. +|++||+.+ .|....+|.|. +++. ..+.|.+. .+..|+... -+.+..
T Consensus 157 ~~~~~G~~lF~~~~g~~~~~Ca~CHg~~-~G~~~g~~~l~~~~~~----~~p~Yr~~-----~g~~~tl~~---ri~~~~ 223 (261)
T 1h32_A 157 STWEKGREIYYTRYGQLDLSCASCHEQY-FDHYIRADHLSQGQIN----GFPSYRLK-----NARLNAVHD---RFRGCI 223 (261)
T ss_dssp HHHHHHHHHHTCCBTTTTBCHHHHHTTS-TTSEETTEECCCCCCT----TCSEEETT-----TTEEECHHH---HHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcccccCCCC-CCCCCCCCcCCCCccc----CCcceecc-----CcchhhHHH---HHHHHH
Confidence 467899999987 599999975 23212234443 2221 11111110 111222222 222111
Q ss_pred CCCCCCCC-CCCCCCCHHHHHHHHHHHHhccC
Q 033761 82 KYIPGTKM-VFPGLKKPQDRADLIAYLKQSTA 112 (112)
Q Consensus 82 ~~~~~~~m-~~~~~ls~~e~~~l~ayl~~l~~ 112 (112)
..| .....||++||.+|++||.+|++
T Consensus 224 -----~~m~~~~~~Ls~~ei~aLaaYl~sL~~ 250 (261)
T 1h32_A 224 -----RDTRGVPFAVGSPEFVALELYVASRGN 250 (261)
T ss_dssp -----HTTTBCCCCTTCHHHHHHHHHHHHHTT
T ss_pred -----hccCCCCCCCChHHHHHHHHHHHHhcC
Confidence 133 23445899999999999999863
No 82
>2c1v_A DI-HAEM cytochrome C peroxidase; electron transport, heme, oxidoreductase, periplasmic; HET: HEC; 1.2A {Paracoccus pantotrophus} PDB: 2c1u_A*
Probab=98.78 E-value=1.3e-08 Score=72.28 Aligned_cols=18 Identities=28% Similarity=0.283 Sum_probs=16.8
Q ss_pred CCCHHHHHHHHHHHHhcc
Q 033761 94 LKKPQDRADLIAYLKQST 111 (112)
Q Consensus 94 ~ls~~e~~~l~ayl~~l~ 111 (112)
.||++|+++|++||++|+
T Consensus 297 ~Ls~~E~~~LvaFL~sLt 314 (338)
T 2c1v_A 297 ELTDQQAEDITAFLGTLT 314 (338)
T ss_dssp CCCHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHcC
Confidence 489999999999999997
No 83
>1nml_A DI-HAEM cytochrome C peroxidase; oxidoreductase, electron transport; HET: HEM CIT; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.5 a.3.1.5 PDB: 1rz5_A* 1rz6_A*
Probab=98.76 E-value=1.1e-08 Score=72.23 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHHHHhccC
Q 033761 94 LKKPQDRADLIAYLKQSTA 112 (112)
Q Consensus 94 ~ls~~e~~~l~ayl~~l~~ 112 (112)
.||++|+++|++||++|+.
T Consensus 283 ~Ls~~e~~~LvAFL~sLt~ 301 (326)
T 1nml_A 283 ELNNDEVKSIVAFLKTLTG 301 (326)
T ss_dssp CCCHHHHHHHHHHHGGGCC
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 5899999999999999973
No 84
>2vhd_A Cytochrome C551 peroxidase; iron, heme, transport, metal-binding, oxidoreduc electron transport; HET: HEC; 2.3A {Pseudomonas aeruginosa} SCOP: a.3.1.5 a.3.1.5 PDB: 1eb7_A*
Probab=98.75 E-value=1.4e-08 Score=71.72 Aligned_cols=18 Identities=22% Similarity=0.499 Sum_probs=16.8
Q ss_pred CCCHHHHHHHHHHHHhcc
Q 033761 94 LKKPQDRADLIAYLKQST 111 (112)
Q Consensus 94 ~ls~~e~~~l~ayl~~l~ 111 (112)
.||++|+++|++||++|+
T Consensus 283 ~Ls~~E~~~LvaFL~tLt 300 (323)
T 2vhd_A 283 QLAPDDVENIVAFLHSLS 300 (323)
T ss_dssp CCCHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHcC
Confidence 589999999999999986
No 85
>2c1d_A SOXA; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus denitrificans}
Probab=98.75 E-value=4.2e-09 Score=72.38 Aligned_cols=84 Identities=17% Similarity=0.201 Sum_probs=45.7
Q ss_pred ccHHHHHHHHHhc-------CCccccCcCCCCCCCCCCcc-cccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCC
Q 033761 10 GNAKAGEKIFKTK-------CAQCHTVEKGAGHKQGPNLN-GLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPK 81 (112)
Q Consensus 10 ~~~~~G~~lf~~~-------C~~CH~~~~~g~~~~gP~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 81 (112)
+++++|++||..+ |++||+.+ .|.....|.|. ++.. ..+.|.+. .+..|+... .+.+.
T Consensus 160 ~~~~~G~~lF~~~~G~~~~aCa~CHg~~-~G~~~~~~~l~~g~~~----~~p~Y~~~-----~~~~~t~~~---r~~~~- 225 (264)
T 2c1d_A 160 PYWEHGKEIYYTRYGQLEMSCANCHEDN-AGNMIRADHLSQGQIN----GFPTYRLK-----DSGMVTAQH---RFVGC- 225 (264)
T ss_dssp HHHHHHHHHHHCCBTTTTBCHHHHHTTS-TTSEETTEECCCCCCT----TCSEEETT-----TTEEECHHH---HHHHH-
T ss_pred HHHHHHHHHHHhhcCCCCCcccccCCCC-CCCCcCCCcCCCcccc----CCcchhhc-----ccccccHHH---HHHHH-
Confidence 4678999999976 99999976 33111223332 2211 11112111 011122222 21111
Q ss_pred CCCCCCCCC-CCCCCCHHHHHHHHHHHHhcc
Q 033761 82 KYIPGTKMV-FPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 82 ~~~~~~~m~-~~~~ls~~e~~~l~ayl~~l~ 111 (112)
...|+ ....||++||.+|++||.+|.
T Consensus 226 ----~~~M~~~~~~Ls~~ei~aLaaYv~sL~ 252 (264)
T 2c1d_A 226 ----VRDTRAETFKAGSDDFKALELYVASRG 252 (264)
T ss_dssp ----HHTTTBCCCCTTCHHHHHHHHHHHHHT
T ss_pred ----HhhccCCCCCCCHHHHHHHHHHHHHcc
Confidence 11343 455689999999999999986
No 86
>1e8e_A Cytochrome C''; oxidoreductase(cytochrome), ligand detachment, redox-BOHR effect, paramagnetic; HET: HEC; NMR {Methylophilus methylotrophus} SCOP: a.3.1.1 PDB: 1gu2_A* 1oae_A*
Probab=98.74 E-value=2.1e-09 Score=65.56 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=17.4
Q ss_pred CCCCHHHHHHHHHHHHhccC
Q 033761 93 GLKKPQDRADLIAYLKQSTA 112 (112)
Q Consensus 93 ~~ls~~e~~~l~ayl~~l~~ 112 (112)
..+|++|..||++||.++++
T Consensus 102 r~cTa~EK~D~~ayL~s~~~ 121 (124)
T 1e8e_A 102 ADCSPSEKANFIAYLLTETK 121 (124)
T ss_dssp SCCCHHHHHHHHHHHTTCCC
T ss_pred cCCCHHHHHHHHHHHHHcCC
Confidence 35799999999999999864
No 87
>3a9f_A Cytochrome C; alpha helix, mono heme, electron transport; HET: HEC P33 PGE PG4; 1.30A {Chlorobaculum tepidum}
Probab=98.71 E-value=8.5e-09 Score=60.30 Aligned_cols=21 Identities=29% Similarity=0.727 Sum_probs=18.8
Q ss_pred ccHHHHHHHHHhcCCccccCc
Q 033761 10 GNAKAGEKIFKTKCAQCHTVE 30 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~ 30 (112)
.+...|+.||+++|.+||+.+
T Consensus 25 ~~~~~g~~l~~~kC~~CHs~d 45 (92)
T 3a9f_A 25 FDFDAAKKLVDVRCNKCHTLD 45 (92)
T ss_dssp CCHHHHHHHHHHHSSSSSCSG
T ss_pred cChHhHHHHHHhHHHHhcCCc
Confidence 367899999999999999975
No 88
>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*
Probab=98.70 E-value=1.1e-07 Score=64.54 Aligned_cols=25 Identities=20% Similarity=0.670 Sum_probs=21.4
Q ss_pred CCCCccHHHHHHHHHhcCCccccCc
Q 033761 6 EAPPGNAKAGEKIFKTKCAQCHTVE 30 (112)
Q Consensus 6 a~~~~~~~~G~~lf~~~C~~CH~~~ 30 (112)
..+.+++++|.++|.++|++||+.+
T Consensus 23 ~~D~aslqRG~qvy~~~CaaCHsl~ 47 (248)
T 3cx5_D 23 TFDHASIRRGYQVYREVCAACHSLD 47 (248)
T ss_dssp CCCHHHHHHHHHHHHHTGGGTCCCT
T ss_pred CcchHhHhhhHHHHHHhhhhccCcc
Confidence 3445678999999999999999976
No 89
>3hq9_A Cytochrome C551 peroxidase; oxidoreductase; HET: HEM; 1.52A {Geobacter sulfurreducens} PDB: 3hq6_A* 3hq8_A* 3hq7_A*
Probab=98.69 E-value=1.5e-08 Score=72.03 Aligned_cols=21 Identities=14% Similarity=0.093 Sum_probs=18.2
Q ss_pred CCCCCHHHHHHHHHHHHhccC
Q 033761 92 PGLKKPQDRADLIAYLKQSTA 112 (112)
Q Consensus 92 ~~~ls~~e~~~l~ayl~~l~~ 112 (112)
...||++|+++|++||++|+.
T Consensus 303 ~~~Ls~~E~~~LvaFL~sLt~ 323 (345)
T 3hq9_A 303 GIKLSDDESEAIAAFLGSLTG 323 (345)
T ss_dssp TCCCCHHHHHHHHHHHHTTCC
T ss_pred ccCCCHHHHHHHHHHHHHhCC
Confidence 346899999999999999973
No 90
>1jmx_A Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jmz_A*
Probab=98.64 E-value=5.5e-09 Score=76.33 Aligned_cols=66 Identities=17% Similarity=0.279 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCCccccCcCCCCCCCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHHHhCCCCCCCCCCC-CC
Q 033761 13 KAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKM-VF 91 (112)
Q Consensus 13 ~~G~~lf~~~C~~CH~~~~~g~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m-~~ 91 (112)
+.|+.||..+|++||+.+++|. +..+.... -+.+.....+.. |+ .+
T Consensus 2 a~Gk~LF~~NCAaCHGagaqG~------~~~Is~qr-------------------~S~e~Wq~tV~R--------Mp~a~ 48 (494)
T 1jmx_A 2 EQGPSLLQNKCMGCHIPEGNDT------YSRISHQR-------------------KTPEGWLMSIAR--------MQVMH 48 (494)
T ss_dssp CCHHHHHHHHHBTTBCEEETTE------ETTGGGCE-------------------ECHHHHHHHHHH--------HHHHH
T ss_pred chhhHHHhhhhhhhcCCCccCc------cccccccC-------------------CCHHHHHHHHHh--------hhhhh
Confidence 3699999999999999876542 11111100 012222222221 22 24
Q ss_pred CCCCCHHHHHHHHHHHHhcc
Q 033761 92 PGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 92 ~~~ls~~e~~~l~ayl~~l~ 111 (112)
...|+++|+.+|++||.++.
T Consensus 49 Ga~LSdEEI~aVAaYLasls 68 (494)
T 1jmx_A 49 GLQISDDDRRTLVKYLADKQ 68 (494)
T ss_dssp CCCCCHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHhC
Confidence 55689999999999998763
No 91
>3sjl_A Methylamine utilization protein MAUG; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 3sle_A* 3svw_A* 3sxt_A* 3l4o_A* 3pxs_A* 3pxt_A* 3pxw_A* 3l4m_A* 3sws_A* 3orv_A* 3rmz_A* 3rlm_A* 3rn0_A* 3rn1_A*
Probab=98.62 E-value=2.2e-07 Score=66.63 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=19.1
Q ss_pred CCCccHHHHHHHHHh-cCCccccC
Q 033761 7 APPGNAKAGEKIFKT-KCAQCHTV 29 (112)
Q Consensus 7 ~~~~~~~~G~~lf~~-~C~~CH~~ 29 (112)
..+.++.+|..||.. +|++||..
T Consensus 184 aLt~~e~rG~~LF~~~~C~~CH~g 207 (373)
T 3sjl_A 184 KFTPLEEFGYTVFITWNCRLCHMQ 207 (373)
T ss_dssp CCCHHHHHHHHHHHHSGGGGTSSS
T ss_pred cCCHHHHHHHHHHCcCCCccccCC
Confidence 356778899999976 69999974
No 92
>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ...
Probab=98.62 E-value=2.9e-07 Score=62.27 Aligned_cols=27 Identities=19% Similarity=0.530 Sum_probs=22.2
Q ss_pred CCCCccHHHHHHHHHhcCCccccCcCC
Q 033761 6 EAPPGNAKAGEKIFKTKCAQCHTVEKG 32 (112)
Q Consensus 6 a~~~~~~~~G~~lf~~~C~~CH~~~~~ 32 (112)
..+.+++++|.++|.++|++||+.+..
T Consensus 20 ~~D~~slqRG~qvy~~~CaaCHSl~y~ 46 (241)
T 1pp9_D 20 SLDHTSIRRGFQVYKQVCSSCHSMDYV 46 (241)
T ss_dssp CCCHHHHHHHHHHHHHTGGGTCCCTTC
T ss_pred CcchHHHhhhHHHHHHhhhhccCcccc
Confidence 344567899999999999999997643
No 93
>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans}
Probab=98.58 E-value=1.7e-07 Score=64.00 Aligned_cols=26 Identities=15% Similarity=0.484 Sum_probs=21.6
Q ss_pred CCCCccHHHHHHHHHhcCCccccCcC
Q 033761 6 EAPPGNAKAGEKIFKTKCAQCHTVEK 31 (112)
Q Consensus 6 a~~~~~~~~G~~lf~~~C~~CH~~~~ 31 (112)
..+.++++||.++|.++|++||+.+.
T Consensus 41 ~~D~aslqRG~qVy~evCaaCHsl~~ 66 (263)
T 2yiu_B 41 KFDQHQLQRGLQVYTEVCSACHGLRY 66 (263)
T ss_dssp CCCHHHHHHHHHHHHHTGGGTCCCTT
T ss_pred ccchHHHHHHHHHHHHHhhccCCccc
Confidence 34456789999999999999999764
No 94
>1dw0_A Cytochrome C; asparagine ligation, oxygen binding, disulfide bridge, oxygen storage/transport complex; HET: HEM; 1.82A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1dw1_A* 1dw2_A* 1dw3_A*
Probab=98.56 E-value=4e-08 Score=59.11 Aligned_cols=82 Identities=21% Similarity=0.437 Sum_probs=44.4
Q ss_pred CccHHHHHHHHHh----------cCCccccCcCCCCC--CCCCCcccccCCccccCCCCCCchhhhcccccccHHHHHHH
Q 033761 9 PGNAKAGEKIFKT----------KCAQCHTVEKGAGH--KQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDY 76 (112)
Q Consensus 9 ~~~~~~G~~lf~~----------~C~~CH~~~~~g~~--~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 76 (112)
..++++|+.||.+ .|++||+.+....+ ..|-.+..+. ....+-.++ +.+.+..|
T Consensus 19 ~~~a~RG~alf~~~~~~~~g~~pSCaSCHg~~p~~~g~~~tgk~I~p~A----p~~np~Rft----------D~akvekw 84 (112)
T 1dw0_A 19 PADAERGRALFLSTQTGGKPDTPSCTTCHGADVTRAGQTRTGKEIAPLA----PSATPDRFT----------DSARVEKW 84 (112)
T ss_dssp CCCHHHHHHHHHCCCSSSCTTCCSTHHHHCSSTTSCEECTTSCEECCSS----TTTSTTTTC----------CHHHHHHH
T ss_pred cccHHHHHHHHhhhcccCCCCCCcccccCCCCcccCcccccCCcccCcC----CccCccccC----------CHHHHHHH
Confidence 5688999999932 49999997653211 1111111110 001111111 45566666
Q ss_pred HhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhc
Q 033761 77 LLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQS 110 (112)
Q Consensus 77 l~~~~~~~~~~~m~~~~~ls~~e~~~l~ayl~~l 110 (112)
... +..=-+....|.+|..|+++||.++
T Consensus 85 f~r------nc~~v~gr~cta~EK~d~l~~l~~~ 112 (112)
T 1dw0_A 85 LGR------NCNSVIGRDCTPGEKADLLAWLAAQ 112 (112)
T ss_dssp HHH------HHHHHHSSCCCHHHHHHHHHHHHTC
T ss_pred HHh------hhhHHHcccCCHHHHHHHHHHHHhC
Confidence 532 1000122346899999999999874
No 95
>3oa8_A SOXA; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_A*
Probab=98.54 E-value=3.6e-08 Score=68.13 Aligned_cols=88 Identities=19% Similarity=0.228 Sum_probs=48.0
Q ss_pred ccHHHHHHHH-------HhcCCccccCcCCCCCC-CCCCcccccC---CccccCCCCCCchhhhcccccccHH-HHHHHH
Q 033761 10 GNAKAGEKIF-------KTKCAQCHTVEKGAGHK-QGPNLNGLFG---RQSGTTPGYSYSAANKNMAVNWEEK-TLYDYL 77 (112)
Q Consensus 10 ~~~~~G~~lf-------~~~C~~CH~~~~~g~~~-~gP~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l 77 (112)
+.+++|++|| ...|++||+.+|.|... ..|.|.+... ...++.+.|.... ...|+.. .+..-.
T Consensus 163 ~~~~~G~~lf~~r~G~~~~~Ca~CHg~~G~g~~~~~~P~L~g~~qg~~~~~gq~p~Y~~~q-----~~~~~~~~R~~~c~ 237 (275)
T 3oa8_A 163 EMYAIGEALFFRRSSINDFSCSTCHGAAGKRIRLQALPQLDVPGKDAQLTMATWPTYRVSQ-----SALRTMQHRMWDCY 237 (275)
T ss_dssp HHHHHHHHHHHCCBTTTTBCHHHHHSSSSCEETTEECCCCSSSSHHHHHHHTTCSEEEGGG-----TEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCchHhhCCCcCCCCCccCCCcccccccccccccccCHHHHHHH-----hhhhhhhhcccchh
Confidence 3567899999 24699999988765322 3577774200 0001122221110 0112211 111111
Q ss_pred hCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHhcc
Q 033761 78 LNPKKYIPGTKM-VFPGLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 78 ~~~~~~~~~~~m-~~~~~ls~~e~~~l~ayl~~l~ 111 (112)
..| .....|+++||.+|++||.+|+
T Consensus 238 ---------~~M~~~a~~l~~~ei~ALa~Yl~~ls 263 (275)
T 3oa8_A 238 ---------RQMRMPAPDYASEAVTALTLYLTKQA 263 (275)
T ss_dssp ---------HHTTCCCCCTTCHHHHHHHHHHHHHT
T ss_pred ---------hhhccCCCCCChHHHHHHHHHHHHhC
Confidence 134 3455689999999999999886
No 96
>2c1d_A SOXA; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus denitrificans}
Probab=98.39 E-value=3.6e-08 Score=67.72 Aligned_cols=19 Identities=5% Similarity=0.163 Sum_probs=16.4
Q ss_pred CCCHHHHHHHHHHHHhccC
Q 033761 94 LKKPQDRADLIAYLKQSTA 112 (112)
Q Consensus 94 ~ls~~e~~~l~ayl~~l~~ 112 (112)
.++++|+.+|++|+++|++
T Consensus 128 ~l~~~~~~alaaY~~sls~ 146 (264)
T 2c1d_A 128 GVTSDNMKDMLSLISLQSR 146 (264)
T ss_dssp CTTSHHHHHHHHHHHHTTT
T ss_pred cccHHHHHHHHHHHHHHhc
Confidence 4678999999999999863
No 97
>1pby_A Quinohemoprotein amine dehydrogenase 60 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jju_A*
Probab=98.38 E-value=2.3e-07 Score=67.69 Aligned_cols=20 Identities=30% Similarity=0.843 Sum_probs=17.2
Q ss_pred HHHHHHHhcCCccccCcCCC
Q 033761 14 AGEKIFKTKCAQCHTVEKGA 33 (112)
Q Consensus 14 ~G~~lf~~~C~~CH~~~~~g 33 (112)
.|+.||.++|++||+.+.+|
T Consensus 2 ~GkeLv~anCasCHsad~~G 21 (489)
T 1pby_A 2 TGEEVLQNACAACHVQHEDG 21 (489)
T ss_dssp CHHHHHHHTGGGTSCBCTTS
T ss_pred ChHHHHHhhhHhhcCCCccc
Confidence 58999999999999987544
No 98
>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B*
Probab=98.23 E-value=1.1e-05 Score=55.26 Aligned_cols=26 Identities=19% Similarity=0.477 Sum_probs=21.9
Q ss_pred CCCCccHHHHHHHHHhcCCccccCcC
Q 033761 6 EAPPGNAKAGEKIFKTKCAQCHTVEK 31 (112)
Q Consensus 6 a~~~~~~~~G~~lf~~~C~~CH~~~~ 31 (112)
..+.++++||.++|.+.|++||+.+.
T Consensus 19 ~~D~asLqRG~qVy~evCaaCHsl~~ 44 (269)
T 2qjy_B 19 TFDQHQLQRGLQVYTEVCAACHGMKF 44 (269)
T ss_dssp CCCHHHHHHHHHHHHHTGGGTCCCTT
T ss_pred CcCHHHHHHHHHHHHHHHhhcCCchh
Confidence 34557889999999999999999764
No 99
>1h32_A SOXA, diheme cytochrome C; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.8 a.3.1.8 PDB: 1h31_A* 1h33_A* 2oz1_A*
Probab=98.19 E-value=6.8e-08 Score=66.23 Aligned_cols=19 Identities=11% Similarity=0.074 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHHHhccC
Q 033761 94 LKKPQDRADLIAYLKQSTA 112 (112)
Q Consensus 94 ~ls~~e~~~l~ayl~~l~~ 112 (112)
.++++|+.+|++|+++|++
T Consensus 125 ~l~~~~i~alaaY~~sls~ 143 (261)
T 1h32_A 125 DYIGPDMTAMVALIASVSR 143 (261)
T ss_dssp CTTSHHHHHHHHHHHHTTT
T ss_pred ccCHHHHHHHHHHHHHHhc
Confidence 4689999999999999863
No 100
>1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A {Rhodobacter capsulatus}
Probab=97.66 E-value=1.9e-05 Score=53.86 Aligned_cols=26 Identities=15% Similarity=0.512 Sum_probs=21.8
Q ss_pred CCCCccHHHHHHHHHhcCCccccCcC
Q 033761 6 EAPPGNAKAGEKIFKTKCAQCHTVEK 31 (112)
Q Consensus 6 a~~~~~~~~G~~lf~~~C~~CH~~~~ 31 (112)
..+.++++||.++|.+.|++||+...
T Consensus 17 ~~D~asLqRG~qvy~evCa~CHsl~~ 42 (258)
T 1zrt_D 17 KYDQAQLRRGFQVYNEVCSACHGMKF 42 (258)
T ss_dssp CCCHHHHHHHHHHHHHTTTTTCCCTT
T ss_pred CcCHHHHHHHHHHHHHHHhhcCCchh
Confidence 34557889999999999999999653
No 101
>1zzh_A Cytochrome C peroxidase; heme groups, oxidoreductase; HET: HEC; 2.70A {Rhodobacter capsulatus}
Probab=97.52 E-value=0.00016 Score=51.08 Aligned_cols=24 Identities=25% Similarity=0.562 Sum_probs=18.6
Q ss_pred CCccHHHHHHHHHh---------cCCccccCcC
Q 033761 8 PPGNAKAGEKIFKT---------KCAQCHTVEK 31 (112)
Q Consensus 8 ~~~~~~~G~~lf~~---------~C~~CH~~~~ 31 (112)
..+.++.|+.||.. .|++||..+.
T Consensus 30 ~~~~v~lGk~LF~D~~LS~~~~~SCasCH~~~~ 62 (328)
T 1zzh_A 30 TRDKIDLGAMLFFDPRMSKSGVFSCQSCHNVGL 62 (328)
T ss_dssp TTHHHHHHHHHHHCGGGSTTSSCCHHHHSBTTT
T ss_pred CHHHHHHHHHHhCCcccccCCCcchhhcCCccc
Confidence 35667899999964 3999998753
No 102
>1iqc_A DI-heme peroxidase; proteobacteria, B subdivision, ammonia-oxidizing bacteria, oxidoreductase; HET: HEM; 1.80A {Nitrosomonas europaea} SCOP: a.3.1.5 a.3.1.5
Probab=97.28 E-value=0.0011 Score=46.29 Aligned_cols=16 Identities=0% Similarity=-0.035 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHhcc
Q 033761 96 KPQDRADLIAYLKQST 111 (112)
Q Consensus 96 s~~e~~~l~ayl~~l~ 111 (112)
.++++.+|++|+++|.
T Consensus 135 ~~~~~~Aia~y~~tl~ 150 (308)
T 1iqc_A 135 IDRITTAIAQFEETLV 150 (308)
T ss_dssp HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhhhC
Confidence 4889999999999874
No 103
>2c1v_A DI-HAEM cytochrome C peroxidase; electron transport, heme, oxidoreductase, periplasmic; HET: HEC; 1.2A {Paracoccus pantotrophus} PDB: 2c1u_A*
Probab=97.14 E-value=0.0018 Score=45.86 Aligned_cols=22 Identities=27% Similarity=0.668 Sum_probs=17.7
Q ss_pred CccHHHHHHHHHh---------cCCccccCc
Q 033761 9 PGNAKAGEKIFKT---------KCAQCHTVE 30 (112)
Q Consensus 9 ~~~~~~G~~lf~~---------~C~~CH~~~ 30 (112)
.+.++.|+.||.. .|++||...
T Consensus 42 ~~~v~lGk~LF~D~~LS~~~~~SCasCH~~~ 72 (338)
T 2c1v_A 42 AEKIELGKVLFFDPRMSSSGLISCQTCHNVG 72 (338)
T ss_dssp HHHHHHHHHHHTCGGGSTTSSCCHHHHSBTT
T ss_pred HHHHHHHHHHhcCcccccCCCcchhhcCCcc
Confidence 4567899999975 599999865
No 104
>2vhd_A Cytochrome C551 peroxidase; iron, heme, transport, metal-binding, oxidoreduc electron transport; HET: HEC; 2.3A {Pseudomonas aeruginosa} SCOP: a.3.1.5 a.3.1.5 PDB: 1eb7_A*
Probab=97.07 E-value=0.0019 Score=45.42 Aligned_cols=22 Identities=32% Similarity=0.717 Sum_probs=17.5
Q ss_pred CccHHHHHHHHHhc---------CCccccCc
Q 033761 9 PGNAKAGEKIFKTK---------CAQCHTVE 30 (112)
Q Consensus 9 ~~~~~~G~~lf~~~---------C~~CH~~~ 30 (112)
.+.++.|+.||... |++||..+
T Consensus 28 ~~~v~lGk~LF~d~~LS~~~~~sCasCH~~~ 58 (323)
T 2vhd_A 28 EQQRELGKKLFFDPRLSRSHVLSCNTCHNVG 58 (323)
T ss_dssp HHHHHHHHHHHTCGGGSSSSCCCHHHHSCGG
T ss_pred HHHHHHHHHHhcCccccCCCCcchhhcCCCc
Confidence 34578899999744 99999874
No 105
>1jmx_A Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jmz_A*
Probab=96.98 E-value=3.6e-05 Score=56.52 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=20.4
Q ss_pred CccHHHHHHHHHhcCCccccCcCCC
Q 033761 9 PGNAKAGEKIFKTKCAQCHTVEKGA 33 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~~g 33 (112)
..++++|++||..+|++||+.++.+
T Consensus 86 ~~~va~G~eLF~~NCAaCHG~dGkG 110 (494)
T 1jmx_A 86 LNTVEQFDTQLSETCGRCHSGARVA 110 (494)
T ss_dssp TTCCCCCCHHHHHHHSSSSCSHHHH
T ss_pred cchhhhHHHHHhhhhhhcCCcccCc
Confidence 4456789999999999999987644
No 106
>2fw5_A DHC, diheme cytochrome C; electron transfer, electron transport; HET: HEM; 2.00A {Rhodobacter sphaeroides}
Probab=96.88 E-value=0.0017 Score=40.34 Aligned_cols=16 Identities=25% Similarity=0.781 Sum_probs=13.3
Q ss_pred HHHHHHHhcCCccccC
Q 033761 14 AGEKIFKTKCAQCHTV 29 (112)
Q Consensus 14 ~G~~lf~~~C~~CH~~ 29 (112)
.++.+|.++|++||..
T Consensus 15 ~~~~~y~~~C~~CH~a 30 (139)
T 2fw5_A 15 VTDPLTRTECSACHMA 30 (139)
T ss_dssp CCCHHHHHHTTSSSCC
T ss_pred ccHHHHHHHHHhccCC
Confidence 3577999999999974
No 107
>2fwt_A DHC, diheme cytochrome C; diheme protein, electron transfer, sphaeroides heme protein, oxygen-binding, electron transpor; HET: HEM; 1.85A {Rhodobacter sphaeroides}
Probab=96.76 E-value=0.0042 Score=37.91 Aligned_cols=14 Identities=29% Similarity=0.916 Sum_probs=12.2
Q ss_pred HHHHHhcCCccccC
Q 033761 16 EKIFKTKCAQCHTV 29 (112)
Q Consensus 16 ~~lf~~~C~~CH~~ 29 (112)
+.+|.++|++||..
T Consensus 6 ~~~y~~~C~~CH~a 19 (125)
T 2fwt_A 6 DPLTRTECSACHMA 19 (125)
T ss_dssp CHHHHHHTSSSSCC
T ss_pred HHHHHHHHHhccCC
Confidence 57899999999974
No 108
>3hq9_A Cytochrome C551 peroxidase; oxidoreductase; HET: HEM; 1.52A {Geobacter sulfurreducens} PDB: 3hq6_A* 3hq8_A* 3hq7_A*
Probab=96.68 E-value=0.00079 Score=47.84 Aligned_cols=22 Identities=27% Similarity=0.729 Sum_probs=17.6
Q ss_pred CccHHHHHHHHHh---------cCCccccCc
Q 033761 9 PGNAKAGEKIFKT---------KCAQCHTVE 30 (112)
Q Consensus 9 ~~~~~~G~~lf~~---------~C~~CH~~~ 30 (112)
...++.|+.||.. .|++||.++
T Consensus 50 ~~~v~lG~~LF~d~rLS~~~~~sCasCH~~~ 80 (345)
T 3hq9_A 50 PVKVELGKMLYFDPRLSASHLISCNTCHNVG 80 (345)
T ss_dssp HHHHHHHHHHHHCGGGSTTSCCCHHHHSBTT
T ss_pred HHHHHHHHHHhCCcccCCCCCCchhhcCChh
Confidence 3457789999964 599999875
No 109
>3o5c_A Cytochrome C551 peroxidase; diheme cytochrome, hydrogen peroxide, oxidoreductase; HET: HEM; 1.80A {Shewanella oneidensis}
Probab=96.44 E-value=0.015 Score=40.94 Aligned_cols=22 Identities=27% Similarity=0.788 Sum_probs=17.0
Q ss_pred CccHHHHHHHHHh---------cCCccccCc
Q 033761 9 PGNAKAGEKIFKT---------KCAQCHTVE 30 (112)
Q Consensus 9 ~~~~~~G~~lf~~---------~C~~CH~~~ 30 (112)
.+.++-|+.||-. .|++||.++
T Consensus 24 ~~kv~LGk~LFfD~rLS~~~~~SCasCH~p~ 54 (320)
T 3o5c_A 24 PEKVELGKMLFFEPRLSKSGFISCNSCHNLS 54 (320)
T ss_dssp HHHHHHHHHHHTCGGGSTTSCCCHHHHSCTT
T ss_pred HHHHHHHHHHhCCcccCCCCCCCccccCCcc
Confidence 4556789999953 399999765
No 110
>3u99_A Diheme cytochrome C; cytochrome C fold, electron transfer protein, electron trans diheme protein, bacterium shewanella baltica OS155; HET: HEC; 1.15A {Shewanella baltica}
Probab=95.20 E-value=0.056 Score=33.84 Aligned_cols=13 Identities=23% Similarity=0.848 Sum_probs=10.6
Q ss_pred HHHHhcCCccccC
Q 033761 17 KIFKTKCAQCHTV 29 (112)
Q Consensus 17 ~lf~~~C~~CH~~ 29 (112)
..|.+.|++||-.
T Consensus 13 ~~Y~~eCgsCH~A 25 (148)
T 3u99_A 13 AEYTAECGSCHMA 25 (148)
T ss_dssp HHHHHHHSSSSCC
T ss_pred HHHHHHHHhCCcc
Confidence 4688899999964
No 111
>1nml_A DI-HAEM cytochrome C peroxidase; oxidoreductase, electron transport; HET: HEM CIT; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.5 a.3.1.5 PDB: 1rz5_A* 1rz6_A*
Probab=93.81 E-value=0.014 Score=41.08 Aligned_cols=22 Identities=27% Similarity=0.613 Sum_probs=17.4
Q ss_pred CccHHHHHHHHHh---------cCCccccCc
Q 033761 9 PGNAKAGEKIFKT---------KCAQCHTVE 30 (112)
Q Consensus 9 ~~~~~~G~~lf~~---------~C~~CH~~~ 30 (112)
.+.++.|+.||.. .|++||...
T Consensus 28 ~~~v~lGk~LF~D~~LS~~~~~sCasCH~~~ 58 (326)
T 1nml_A 28 QAKVELGKMEFFEPRLSSSHLISCNTCHNVG 58 (326)
T ss_dssp HHHHHHHHHHHTCGGGSTTSCCCHHHHSCTT
T ss_pred HHHHHHHHHHhcCcccccCCCccchhcCCcc
Confidence 3567899999964 499999864
No 112
>1pby_A Quinohemoprotein amine dehydrogenase 60 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jju_A*
Probab=92.80 E-value=0.0098 Score=43.73 Aligned_cols=21 Identities=14% Similarity=0.491 Sum_probs=16.7
Q ss_pred ccHHHHHHHHHhcCCccccCc
Q 033761 10 GNAKAGEKIFKTKCAQCHTVE 30 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~ 30 (112)
+++..|..+|..+|+.||+..
T Consensus 87 ~~~~~ggelfr~nCA~CHn~A 107 (489)
T 1pby_A 87 AWDEGPDTSMTQTCGRCHSYA 107 (489)
T ss_dssp CCCCCSSHHHHHHHSSSSCTH
T ss_pred CcccCchhhHHhhHhhhCCch
Confidence 355567899999999999854
No 113
>4aan_A Cytochrome C551 peroxidase; oxidoreductase, multiheme cytochromes, conformational rearra; HET: HEC; 1.22A {Geobacter sulfurreducens} PDB: 4aam_A* 4aal_A* 4aao_A*
Probab=90.62 E-value=0.043 Score=38.89 Aligned_cols=21 Identities=29% Similarity=0.711 Sum_probs=15.7
Q ss_pred ccHHHHHHHHHh---------cCCccccCc
Q 033761 10 GNAKAGEKIFKT---------KCAQCHTVE 30 (112)
Q Consensus 10 ~~~~~G~~lf~~---------~C~~CH~~~ 30 (112)
+.++-|+.||.. .|++||.+.
T Consensus 46 ~kv~LGr~LFfD~~LS~~~~~SCASCH~~~ 75 (341)
T 4aan_A 46 SRVELGRMLFFDPRLSASHLISCNTCHNVG 75 (341)
T ss_dssp HHHHHHHHHHHCGGGSTTSCCCHHHHSBGG
T ss_pred HHHHHHHHHhcCcccCCCcCCCccccCCcc
Confidence 346779999942 399999754
No 114
>3sjl_A Methylamine utilization protein MAUG; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 3sle_A* 3svw_A* 3sxt_A* 3l4o_A* 3pxs_A* 3pxt_A* 3pxw_A* 3l4m_A* 3sws_A* 3orv_A* 3rmz_A* 3rlm_A* 3rn0_A* 3rn1_A*
Probab=86.87 E-value=0.11 Score=37.26 Aligned_cols=21 Identities=33% Similarity=0.702 Sum_probs=15.5
Q ss_pred ccHHHHHHHHHh---------cCCccccCc
Q 033761 10 GNAKAGEKIFKT---------KCAQCHTVE 30 (112)
Q Consensus 10 ~~~~~G~~lf~~---------~C~~CH~~~ 30 (112)
+.++-|+.||-. .|++||.+.
T Consensus 9 ~kv~LGk~LFfD~rLS~~~~iSCaSCH~p~ 38 (373)
T 3sjl_A 9 ALAALGAQLFVDPALSRNATQSCATCHDPA 38 (373)
T ss_dssp HHHHHHHHHHTCGGGSTTSCCCHHHHSBGG
T ss_pred HHHHHHHHHhCCCccCCCCCcCchhhCCcc
Confidence 456779999931 399999865
No 115
>3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A {Geobacillus stearothermophilus} PDB: 3ayg_A*
Probab=85.94 E-value=0.34 Score=38.04 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=27.0
Q ss_pred ccHHHHHHHHHh-cCCccccCcCCCCCCCCCCccc
Q 033761 10 GNAKAGEKIFKT-KCAQCHTVEKGAGHKQGPNLNG 43 (112)
Q Consensus 10 ~~~~~G~~lf~~-~C~~CH~~~~~g~~~~gP~l~~ 43 (112)
+|+.+||.+|++ .|-.||++=|.| .-.||+++.
T Consensus 67 ~dI~~Gq~~~q~~g~m~~GSi~GhG-aY~aPD~TA 100 (800)
T 3ayf_A 67 ETIIGGQAVFQKYGLMDYGTVLGHG-SYMGPDYTA 100 (800)
T ss_dssp HHHHHHHHHHHHTTGGGTSEETTEE-CSSSCBHHH
T ss_pred HHHHHhHHHHHHcCCcccCccccCC-cccCcchHH
Confidence 468999999997 499999998765 466898874
No 116
>1ogy_B Diheme cytochrome C NAPB molecule: nitrate reductase; oxidoreductase; HET: MGD HEC; 3.2A {Rhodobacter sphaeroides} SCOP: a.138.1.3
Probab=80.40 E-value=1.3 Score=26.97 Aligned_cols=11 Identities=27% Similarity=0.803 Sum_probs=6.0
Q ss_pred cCCccccCcCC
Q 033761 22 KCAQCHTVEKG 32 (112)
Q Consensus 22 ~C~~CH~~~~~ 32 (112)
+|..||.+..+
T Consensus 97 fCtQCHVpQad 107 (130)
T 1ogy_B 97 FCTACHVPQTN 107 (130)
T ss_dssp CGGGTCCBCBC
T ss_pred ecccccCcccc
Confidence 36666665443
No 117
>3ml1_B NAPB, diheme cytochrome C NAPB; heterodimer, oxidoreductase; HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_B*
Probab=76.90 E-value=1 Score=27.56 Aligned_cols=12 Identities=33% Similarity=0.811 Sum_probs=9.2
Q ss_pred cCCccccCcCCC
Q 033761 22 KCAQCHTVEKGA 33 (112)
Q Consensus 22 ~C~~CH~~~~~g 33 (112)
+|..||.++.+.
T Consensus 98 fCtQCHVPQada 109 (135)
T 3ml1_B 98 FCTQCHVPQADT 109 (135)
T ss_dssp SGGGTCCBCBSS
T ss_pred eeccccCccccC
Confidence 599999876543
No 118
>3b42_A GSU0935, methyl-accepting chemotaxis protein, putative; PAS domain, C-type heme containing sensor, unknown function, signaling protein; HET: HEM; 1.90A {Geobacter sulfurreducens}
Probab=75.31 E-value=0.86 Score=27.56 Aligned_cols=9 Identities=33% Similarity=1.176 Sum_probs=7.2
Q ss_pred hcCCccccC
Q 033761 21 TKCAQCHTV 29 (112)
Q Consensus 21 ~~C~~CH~~ 29 (112)
..|.+||..
T Consensus 104 ~~Cl~CH~~ 112 (135)
T 3b42_A 104 QRCQSCHDA 112 (135)
T ss_dssp GGGGGTSCT
T ss_pred cChHhhcCC
Confidence 469999964
No 119
>3b47_A GSU0582, methyl-accepting chemotaxis protein; PAS domain, C-type heme containing sensor, unknown function, signaling protein; HET: HEM; 2.00A {Geobacter sulfurreducens}
Probab=73.91 E-value=0.87 Score=27.61 Aligned_cols=9 Identities=33% Similarity=1.114 Sum_probs=7.4
Q ss_pred hcCCccccC
Q 033761 21 TKCAQCHTV 29 (112)
Q Consensus 21 ~~C~~CH~~ 29 (112)
..|.+||..
T Consensus 103 ~~C~~CH~~ 111 (134)
T 3b47_A 103 VRCQSCHEQ 111 (134)
T ss_dssp TTGGGTSCT
T ss_pred CCchhhhCC
Confidence 369999975
No 120
>1jni_A NAPB;, diheme cytochrome C NAPB; dihaem cytochrome C, proteolytic fragment, nitrate reductase subunit, oxidoreductase; HET: HEM; 1.25A {Haemophilus influenzae} SCOP: a.138.1.3
Probab=66.52 E-value=1.4 Score=26.59 Aligned_cols=10 Identities=40% Similarity=0.916 Sum_probs=6.5
Q ss_pred cCCccccCcC
Q 033761 22 KCAQCHTVEK 31 (112)
Q Consensus 22 ~C~~CH~~~~ 31 (112)
.|..||.+..
T Consensus 96 ~CtqCHVPQ~ 105 (123)
T 1jni_A 96 FCLQCHVSQA 105 (123)
T ss_dssp CGGGTCCC--
T ss_pred ecccccCCcc
Confidence 4888888754
No 121
>1oqe_K Tumor necrosis factor receptor superfamily member 13C; ligand receptor complex, immune system; 2.50A {Homo sapiens} SCOP: g.24.1.2
Probab=64.76 E-value=0.96 Score=20.25 Aligned_cols=10 Identities=20% Similarity=0.760 Sum_probs=8.0
Q ss_pred hcCCccccCc
Q 033761 21 TKCAQCHTVE 30 (112)
Q Consensus 21 ~~C~~CH~~~ 30 (112)
++|++||-..
T Consensus 15 R~CVaC~Ll~ 24 (31)
T 1oqe_K 15 RHCVACGLLR 24 (31)
T ss_dssp TEEEEGGGSC
T ss_pred hcceEEEEEe
Confidence 5899999754
No 122
>2czs_A DHC2, cytochrome C, putative; diheme, C-type cytochrome, electron transport; HET: HEM; 1.50A {Geobacter sulfurreducens}
Probab=59.62 E-value=6.6 Score=21.59 Aligned_cols=9 Identities=33% Similarity=1.195 Sum_probs=6.9
Q ss_pred HhcCCcccc
Q 033761 20 KTKCAQCHT 28 (112)
Q Consensus 20 ~~~C~~CH~ 28 (112)
++.|.+||-
T Consensus 34 E~~C~~CH~ 42 (80)
T 2czs_A 34 DRQCVECHH 42 (80)
T ss_dssp HHHHTTTSC
T ss_pred Hhcchhhcc
Confidence 446999993
No 123
>3oao_A Uncharacterized protein from DUF2059 family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.72A {Pseudomonas aeruginosa} PDB: 2x3o_A
Probab=56.01 E-value=6.8 Score=24.26 Aligned_cols=18 Identities=17% Similarity=0.145 Sum_probs=15.1
Q ss_pred CCCCCHHHHHHHHHHHHh
Q 033761 92 PGLKKPQDRADLIAYLKQ 109 (112)
Q Consensus 92 ~~~ls~~e~~~l~ayl~~ 109 (112)
...+|++|+.+|++|.+|
T Consensus 77 ~~~fT~~El~~l~~FY~s 94 (147)
T 3oao_A 77 TTNFTESELKDLNAFYQS 94 (147)
T ss_dssp HHHSCHHHHHHHHHHHHS
T ss_pred HHHCCHHHHHHHHHHHCC
Confidence 344699999999999976
No 124
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=54.25 E-value=12 Score=21.81 Aligned_cols=18 Identities=6% Similarity=-0.116 Sum_probs=15.0
Q ss_pred CCCCCHHHHHHHHHHHHh
Q 033761 92 PGLKKPQDRADLIAYLKQ 109 (112)
Q Consensus 92 ~~~ls~~e~~~l~ayl~~ 109 (112)
...||++|+.+|++.|..
T Consensus 36 ~r~Ltdeev~~Va~~L~~ 53 (103)
T 2kvc_A 36 CRRLSHDEVKAVANELMR 53 (103)
T ss_dssp TTTSCHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHH
Confidence 356899999999999853
No 125
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=53.98 E-value=12 Score=22.10 Aligned_cols=18 Identities=6% Similarity=0.010 Sum_probs=15.0
Q ss_pred CCCCCHHHHHHHHHHHHh
Q 033761 92 PGLKKPQDRADLIAYLKQ 109 (112)
Q Consensus 92 ~~~ls~~e~~~l~ayl~~ 109 (112)
...||++|+.+|++.|..
T Consensus 38 ~r~Ltdeev~~Va~~L~~ 55 (112)
T 2lky_A 38 TRRLTNDEIKAIAEDLEK 55 (112)
T ss_dssp TTTCCHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHH
Confidence 356899999999999853
No 126
>2m0n_A Putative uncharacterized protein; tuberculosis, structural genomics, seattle structural genomi for infectious disease, ssgcid; NMR {Mycobacterium abscessus}
Probab=52.85 E-value=22 Score=20.96 Aligned_cols=17 Identities=12% Similarity=0.134 Sum_probs=13.5
Q ss_pred CCCCCHHHHHHHHHHHH
Q 033761 92 PGLKKPQDRADLIAYLK 108 (112)
Q Consensus 92 ~~~ls~~e~~~l~ayl~ 108 (112)
...||++|+.+|+.-|.
T Consensus 38 ~R~LtdeEV~~Va~~L~ 54 (112)
T 2m0n_A 38 RRTLTEEQVQEVVAKLT 54 (112)
T ss_dssp CSSCCHHHHHHHHHHHT
T ss_pred hccCCHHHHHHHHHHHH
Confidence 44589999999998774
No 127
>1ci3_M Protein (cytochrome F); electron transfer protein, complex subunit, electron transpo; HET: HEM; 1.90A {Phormidium laminosum} SCOP: b.2.6.1 b.84.2.2 PDB: 1tu2_B*
Probab=51.07 E-value=3.3 Score=27.67 Aligned_cols=8 Identities=50% Similarity=1.215 Sum_probs=6.4
Q ss_pred cCCccccC
Q 033761 22 KCAQCHTV 29 (112)
Q Consensus 22 ~C~~CH~~ 29 (112)
.|+.||-.
T Consensus 20 VCANCHLa 27 (249)
T 1ci3_M 20 VCANCHLA 27 (249)
T ss_dssp GGGGTCCS
T ss_pred Eeeccccc
Confidence 49999963
No 128
>1hcz_A Cytochrome F; electron transport, photosynthesis, cytochrome B6F complex, chloroplast transmembrane; HET: HEM; 1.96A {Brassica rapa} SCOP: b.2.6.1 b.84.2.2 PDB: 1tkw_B* 1ctm_A* 2pcf_B*
Probab=50.88 E-value=3.3 Score=27.69 Aligned_cols=8 Identities=50% Similarity=1.215 Sum_probs=6.4
Q ss_pred cCCccccC
Q 033761 22 KCAQCHTV 29 (112)
Q Consensus 22 ~C~~CH~~ 29 (112)
.|+.||-.
T Consensus 20 VCANCHLA 27 (252)
T 1hcz_A 20 VCANCHLA 27 (252)
T ss_dssp GGGGTCCS
T ss_pred Eeeccccc
Confidence 49999963
No 129
>1e2w_A Cytochrome F; electron transport proteins, internal water chain, photosynthetic function impaired; HET: HEC; 1.6A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 PDB: 1cfm_A* 1ewh_A* 1e2v_A* 1e2z_A*
Probab=50.84 E-value=3.3 Score=27.67 Aligned_cols=8 Identities=50% Similarity=1.215 Sum_probs=6.4
Q ss_pred cCCccccC
Q 033761 22 KCAQCHTV 29 (112)
Q Consensus 22 ~C~~CH~~ 29 (112)
.|+.||-.
T Consensus 20 VCANCHLA 27 (251)
T 1e2w_A 20 VCANCHLA 27 (251)
T ss_dssp GGGGTCCS
T ss_pred Eeeccccc
Confidence 49999963
No 130
>1vf5_C Cytochrome F; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.2.6.1 b.84.2.2 f.23.23.1 PDB: 2d2c_C* 2e74_C* 2e75_C* 2e76_C* 2zt9_C*
Probab=47.31 E-value=4.1 Score=27.76 Aligned_cols=7 Identities=57% Similarity=1.383 Sum_probs=6.0
Q ss_pred cCCcccc
Q 033761 22 KCAQCHT 28 (112)
Q Consensus 22 ~C~~CH~ 28 (112)
.|+.||-
T Consensus 21 VCANCHL 27 (289)
T 1vf5_C 21 VCANCHL 27 (289)
T ss_dssp GGGGTCC
T ss_pred Eeecccc
Confidence 4999996
No 131
>2hfg_R Tumor necrosis factor receptor superfamily member; FAB fragment, TNFRSF, antibody-receptor complex, CRD, immune; 2.61A {Homo sapiens}
Probab=46.13 E-value=2.9 Score=20.79 Aligned_cols=10 Identities=20% Similarity=0.760 Sum_probs=7.9
Q ss_pred hcCCccccCc
Q 033761 21 TKCAQCHTVE 30 (112)
Q Consensus 21 ~~C~~CH~~~ 30 (112)
.+|++||-..
T Consensus 27 R~CVaC~Ll~ 36 (51)
T 2hfg_R 27 RHCVACGLLR 36 (51)
T ss_dssp TEEEECEECC
T ss_pred hcceeeEEEe
Confidence 4899999754
No 132
>1p0t_A Tumor necrosis factor receptor superfamily member 13C; BAFF, BLys, stall, BAFF-R, BR-3, protein binding; 3.30A {Homo sapiens} PDB: 1osx_A
Probab=45.56 E-value=3.6 Score=21.36 Aligned_cols=10 Identities=20% Similarity=0.760 Sum_probs=8.0
Q ss_pred hcCCccccCc
Q 033761 21 TKCAQCHTVE 30 (112)
Q Consensus 21 ~~C~~CH~~~ 30 (112)
.+|++||-..
T Consensus 30 R~CVaC~Ll~ 39 (63)
T 1p0t_A 30 RHCVACGLLR 39 (63)
T ss_dssp TEEECGGGSC
T ss_pred hcceeeEEee
Confidence 5899999754
No 133
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=43.73 E-value=10 Score=16.51 Aligned_cols=11 Identities=36% Similarity=0.945 Sum_probs=8.1
Q ss_pred HHHhcCCcccc
Q 033761 18 IFKTKCAQCHT 28 (112)
Q Consensus 18 lf~~~C~~CH~ 28 (112)
..+++|+.|..
T Consensus 11 aleqkcaaceq 21 (32)
T 4g1a_A 11 ALEQKCAACEQ 21 (32)
T ss_dssp HHHHHTSSHHH
T ss_pred HHHHHHHHHHH
Confidence 34568999974
No 134
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=41.99 E-value=18 Score=21.66 Aligned_cols=18 Identities=0% Similarity=-0.001 Sum_probs=15.6
Q ss_pred CCCHHHHHHHHHHHHhcc
Q 033761 94 LKKPQDRADLIAYLKQST 111 (112)
Q Consensus 94 ~ls~~e~~~l~ayl~~l~ 111 (112)
.||+++++.|..+|..+.
T Consensus 111 ~Ls~e~~~~l~~ii~~l~ 128 (135)
T 3r1f_A 111 GLPSAAQQKVLDRIDELR 128 (135)
T ss_dssp SCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 379999999999998775
No 135
>3h34_A Cytochrome C7, cytochrome C3; multiheme cytochrome, geobacter sulfurreducen electron transport; HET: HEM; 1.60A {Geobacter sulfurreducens} SCOP: a.138.1.1
Probab=41.08 E-value=3.3 Score=22.26 Aligned_cols=15 Identities=33% Similarity=0.822 Sum_probs=11.1
Q ss_pred HHHHHHhcCCccccC
Q 033761 15 GEKIFKTKCAQCHTV 29 (112)
Q Consensus 15 G~~lf~~~C~~CH~~ 29 (112)
.+.++.+.|..||..
T Consensus 42 ~k~~~~~~C~~CH~~ 56 (70)
T 3h34_A 42 GKDYAHKTCKGCHEV 56 (70)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred hhhhhcChhHHHhhh
Confidence 355676789999974
No 136
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=40.66 E-value=27 Score=20.42 Aligned_cols=18 Identities=0% Similarity=-0.127 Sum_probs=14.9
Q ss_pred CCCCCHHHHHHHHHHHHh
Q 033761 92 PGLKKPQDRADLIAYLKQ 109 (112)
Q Consensus 92 ~~~ls~~e~~~l~ayl~~ 109 (112)
...||++|+.+|+..|..
T Consensus 41 ~R~Ltddev~~Va~~L~~ 58 (107)
T 3ol3_A 41 KRSLTEDEVVRAAQAILR 58 (107)
T ss_dssp TCCCCHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHh
Confidence 456899999999988854
No 137
>1ehj_A Cytochrome C7; multi-heme, electron transport; HET: HEC; NMR {Desulfuromonas acetoxidans} SCOP: a.138.1.1 PDB: 1f22_A* 1hh5_A* 1lm2_A* 1new_A* 2new_A* 1kwj_A* 1l3o_A*
Probab=39.50 E-value=4.7 Score=21.45 Aligned_cols=15 Identities=27% Similarity=0.629 Sum_probs=11.7
Q ss_pred HHHHHH-hcCCccccC
Q 033761 15 GEKIFK-TKCAQCHTV 29 (112)
Q Consensus 15 G~~lf~-~~C~~CH~~ 29 (112)
++..|. ..|..||..
T Consensus 40 ~~~~~h~~~C~~CH~~ 55 (68)
T 1ehj_A 40 DKKSAHKDACKTCHKS 55 (68)
T ss_dssp CHHHHHHHSHHHHGGG
T ss_pred HHHHHhccHHHHHhcc
Confidence 467777 689999964
No 138
>2jxm_B Cytochrome F; copper, electron transport, metal-binding, transport; HET: HEC; NMR {Prochlorothrix hollandica} SCOP: i.4.1.1
Probab=39.20 E-value=3.3 Score=27.62 Aligned_cols=8 Identities=50% Similarity=1.215 Sum_probs=6.4
Q ss_pred cCCccccC
Q 033761 22 KCAQCHTV 29 (112)
Q Consensus 22 ~C~~CH~~ 29 (112)
.|+.||-.
T Consensus 20 VCANCHLa 27 (249)
T 2jxm_B 20 VCANCHLA 27 (249)
T ss_dssp THHHHCCS
T ss_pred Eeeccccc
Confidence 39999963
No 139
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=38.96 E-value=25 Score=19.91 Aligned_cols=19 Identities=5% Similarity=0.057 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHHHhccC
Q 033761 94 LKKPQDRADLIAYLKQSTA 112 (112)
Q Consensus 94 ~ls~~e~~~l~ayl~~l~~ 112 (112)
.++++++.+|.+|+.+++.
T Consensus 69 ~l~~~~K~~L~~~~~~lk~ 87 (93)
T 3mab_A 69 GLDEAKKIELKKFHQSLEG 87 (93)
T ss_dssp GSCHHHHHHHHHHHHHHCC
T ss_pred HCCHHHHHHHHHHHHHhhc
Confidence 4789999999999998863
No 140
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=36.39 E-value=27 Score=19.92 Aligned_cols=18 Identities=11% Similarity=0.104 Sum_probs=15.5
Q ss_pred CCCHHHHHHHHHHHHhcc
Q 033761 94 LKKPQDRADLIAYLKQST 111 (112)
Q Consensus 94 ~ls~~e~~~l~ayl~~l~ 111 (112)
.+|++|++.|..+|..+.
T Consensus 107 ~ls~ee~~~l~~~L~~~~ 124 (126)
T 1sd4_A 107 ELNNKEIEELRDILNDIS 124 (126)
T ss_dssp CSCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhhh
Confidence 479999999999998765
No 141
>2j7a_C Cytochrome C quinol dehydrogenase NRFH; cytochrome C nitrite reductase, NRFA, NAPC/NIRT family, membrane complex, oxidoreductase; HET: HEM LMT; 2.3A {Desulfovibrio vulgaris} PDB: 2vr0_C*
Probab=36.25 E-value=5.1 Score=24.77 Aligned_cols=15 Identities=27% Similarity=0.893 Sum_probs=10.4
Q ss_pred HHHHHhcCCccccCc
Q 033761 16 EKIFKTKCAQCHTVE 30 (112)
Q Consensus 16 ~~lf~~~C~~CH~~~ 30 (112)
..+....|.+||+..
T Consensus 109 ~~~~~~~C~~CH~~~ 123 (159)
T 2j7a_C 109 KEVVNANCKACHTMT 123 (159)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCCCcccccccCccc
Confidence 345556799999854
No 142
>2je2_A Cytochrome P460; heme P460, cross-linked heme, metal binding protein; HET: HEC; 1.8A {Nitrosomonas europaea} PDB: 2je3_A*
Probab=35.90 E-value=4.9 Score=25.92 Aligned_cols=10 Identities=40% Similarity=1.069 Sum_probs=7.7
Q ss_pred hcCCccccCc
Q 033761 21 TKCAQCHTVE 30 (112)
Q Consensus 21 ~~C~~CH~~~ 30 (112)
..|.+||...
T Consensus 135 ~~C~~CH~~~ 144 (186)
T 2je2_A 135 AECAACHKEN 144 (186)
T ss_dssp TTTHHHHHHH
T ss_pred ccchhhCCcc
Confidence 4699999753
No 143
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=35.78 E-value=23 Score=20.92 Aligned_cols=16 Identities=6% Similarity=-0.134 Sum_probs=13.7
Q ss_pred CCCHHHHHHHHHHHHh
Q 033761 94 LKKPQDRADLIAYLKQ 109 (112)
Q Consensus 94 ~ls~~e~~~l~ayl~~ 109 (112)
.||++|+..|.++|..
T Consensus 46 ~Lt~~ei~~l~~~i~~ 61 (114)
T 3r8n_M 46 ELSEGQIDTLRDEVAK 61 (114)
T ss_dssp TCCHHHHHHHHHHHSS
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5799999999999843
No 144
>2k3v_A Tetraheme cytochrome C-type; multihaem cytochromes, redox proteins, electron transport, iron, metal-binding, periplasm, transport; HET: HEM; NMR {Shewanella frigidimarina}
Probab=35.43 E-value=11 Score=20.65 Aligned_cols=10 Identities=30% Similarity=0.850 Sum_probs=7.9
Q ss_pred hcCCccccCc
Q 033761 21 TKCAQCHTVE 30 (112)
Q Consensus 21 ~~C~~CH~~~ 30 (112)
..|.+||+..
T Consensus 33 ~~C~~CH~~~ 42 (86)
T 2k3v_A 33 EQCQSCHGSL 42 (86)
T ss_dssp HHTSSSSCCG
T ss_pred chHhHhccCH
Confidence 4799999853
No 145
>1rwj_A Cytochrome C family protein; multiheme cytochrome C, geobacter metallireducens, heme coordination in C-type cytochromes; HET: HEM; 1.70A {Geobacter sulfurreducens} SCOP: a.138.1.1
Probab=34.71 E-value=12 Score=20.67 Aligned_cols=13 Identities=31% Similarity=0.813 Sum_probs=9.0
Q ss_pred HHHHH-hcCCcccc
Q 033761 16 EKIFK-TKCAQCHT 28 (112)
Q Consensus 16 ~~lf~-~~C~~CH~ 28 (112)
+.++. ..|..||.
T Consensus 52 ~~~~~g~~C~~CH~ 65 (82)
T 1rwj_A 52 ADMDKGKSCGACHN 65 (82)
T ss_dssp HHHHTTCGGGGTTT
T ss_pred HHHHcCChhHHHhC
Confidence 34554 46999995
No 146
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=34.51 E-value=20 Score=19.94 Aligned_cols=19 Identities=11% Similarity=0.111 Sum_probs=15.0
Q ss_pred CCCCHHHHHHHHHHHHhcc
Q 033761 93 GLKKPQDRADLIAYLKQST 111 (112)
Q Consensus 93 ~~ls~~e~~~l~ayl~~l~ 111 (112)
..|+++++..|..|+..+.
T Consensus 88 ~~l~~e~~~~i~~~i~~l~ 106 (111)
T 1b0n_A 88 SGVSKKQFREFLDYQKWRK 106 (111)
T ss_dssp SCCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 3578999999999987653
No 147
>1xv3_A Penaeidin-4D, PEN-4D; antimicrobial peptide, antifungal peptide, cysteine-rich, disulfide bond, oxidative folding, proline- rich, shrimp, antibiotic; NMR {Synthetic}
Probab=33.59 E-value=15 Score=18.08 Aligned_cols=8 Identities=25% Similarity=0.854 Sum_probs=6.8
Q ss_pred CCccccCc
Q 033761 23 CAQCHTVE 30 (112)
Q Consensus 23 C~~CH~~~ 30 (112)
|.+||++.
T Consensus 23 C~sC~~is 30 (47)
T 1xv3_A 23 CDVCYGIP 30 (47)
T ss_dssp TTCTTTSC
T ss_pred CccccccC
Confidence 99999864
No 148
>1m1q_A Small tetraheme cytochrome C; atomic structure of oxidized tetraheme cytochrome C, electron transport; HET: HEM; 0.97A {Shewanella oneidensis mr-1} SCOP: a.138.1.3 PDB: 1m1p_A* 1m1r_A*
Probab=32.62 E-value=11 Score=20.92 Aligned_cols=10 Identities=50% Similarity=1.182 Sum_probs=8.0
Q ss_pred cCCccccCcC
Q 033761 22 KCAQCHTVEK 31 (112)
Q Consensus 22 ~C~~CH~~~~ 31 (112)
.|+.||.+..
T Consensus 57 ~C~~CH~pH~ 66 (91)
T 1m1q_A 57 VCADCHAVHD 66 (91)
T ss_dssp CGGGTCCTTT
T ss_pred cHhHhchhhh
Confidence 6999998653
No 149
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=31.90 E-value=32 Score=21.30 Aligned_cols=17 Identities=12% Similarity=0.169 Sum_probs=14.4
Q ss_pred CCCCHHHHHHHHHHHHh
Q 033761 93 GLKKPQDRADLIAYLKQ 109 (112)
Q Consensus 93 ~~ls~~e~~~l~ayl~~ 109 (112)
+.||++|+..|.++|..
T Consensus 52 g~Lt~~ei~~i~~~i~~ 68 (148)
T 3j20_O 52 GYLTDEQVKKIEEILAD 68 (148)
T ss_dssp TBCCHHHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHHhc
Confidence 35899999999999864
No 150
>1q90_A Apocytochrome F; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 f.23.23.1
Probab=31.43 E-value=5.3 Score=27.25 Aligned_cols=8 Identities=50% Similarity=1.215 Sum_probs=6.3
Q ss_pred cCCccccC
Q 033761 22 KCAQCHTV 29 (112)
Q Consensus 22 ~C~~CH~~ 29 (112)
.|+.||-.
T Consensus 20 VCANCHLA 27 (292)
T 1q90_A 20 VCANCHLA 27 (292)
T ss_dssp THHHHCCC
T ss_pred Eeeccccc
Confidence 39999963
No 151
>1al0_B Scaffolding protein GPB; complex (virus capsid proteins), bacteriophage, procapsid, chaperone, icosahedral virus; 3.50A {Enterobacteria phage PHIX174} PDB: 1cd3_B
Probab=30.82 E-value=13 Score=21.77 Aligned_cols=20 Identities=20% Similarity=0.405 Sum_probs=4.9
Q ss_pred CccHHHHHHHHHhc--CCcccc
Q 033761 9 PGNAKAGEKIFKTK--CAQCHT 28 (112)
Q Consensus 9 ~~~~~~G~~lf~~~--C~~CH~ 28 (112)
..+++.|+.+|... |+-|--
T Consensus 64 ~~~iE~~k~~~~R~FG~A~~~d 85 (120)
T 1al0_B 64 RDEIEAGKSYCSRRFGGATCDD 85 (120)
T ss_dssp ----------------CCCCST
T ss_pred HHHHHHHHHHHHHHcCCCCcch
Confidence 35778899999874 999974
No 152
>1m0f_B GPB, scaffolding protein B; bacteriophage, cryo electron microscopy, procapsid, morphogenesis, microviridae, assembly; 16.00A {Enterobacteria phage ALPHA3} SCOP: i.6.1.1
Probab=30.71 E-value=25 Score=18.46 Aligned_cols=19 Identities=21% Similarity=0.441 Sum_probs=14.9
Q ss_pred ccHHHHHHHHHhc--CCcccc
Q 033761 10 GNAKAGEKIFKTK--CAQCHT 28 (112)
Q Consensus 10 ~~~~~G~~lf~~~--C~~CH~ 28 (112)
.+++.|+..|... |+.|--
T Consensus 13 ~eie~~ks~~~R~fG~A~~dd 33 (68)
T 1m0f_B 13 DEIEAGKSYCSRRFGGATCDD 33 (68)
T ss_pred HHHHHHHHHHHHHcCCCCcch
Confidence 4678899999864 999974
No 153
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=30.46 E-value=14 Score=27.38 Aligned_cols=9 Identities=33% Similarity=1.091 Sum_probs=7.6
Q ss_pred cCCccccCc
Q 033761 22 KCAQCHTVE 30 (112)
Q Consensus 22 ~C~~CH~~~ 30 (112)
.|.+||+..
T Consensus 15 ~C~~CH~~~ 23 (572)
T 1d4d_A 15 GCDSCHVSD 23 (572)
T ss_dssp CSTTTSSSS
T ss_pred ChhhhCCCC
Confidence 699999864
No 154
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=29.41 E-value=40 Score=20.91 Aligned_cols=16 Identities=13% Similarity=0.179 Sum_probs=14.2
Q ss_pred CCCHHHHHHHHHHHHh
Q 033761 94 LKKPQDRADLIAYLKQ 109 (112)
Q Consensus 94 ~ls~~e~~~l~ayl~~ 109 (112)
.||++|+..|.++|..
T Consensus 58 ~Lt~~ei~~l~~~i~~ 73 (152)
T 3iz6_M 58 ELSAEEMDRLMAVVHN 73 (152)
T ss_dssp TSCHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHh
Confidence 5899999999999964
No 155
>3h33_A Cytochrome C7, cytochrome C3; multiheme cytochrome, geobacter sulfurreducen electron transport; HET: HEM; 2.25A {Geobacter sulfurreducens} SCOP: a.138.1.1
Probab=29.39 E-value=7.6 Score=21.16 Aligned_cols=15 Identities=27% Similarity=0.625 Sum_probs=10.5
Q ss_pred HHHHHHhc-CCccccC
Q 033761 15 GEKIFKTK-CAQCHTV 29 (112)
Q Consensus 15 G~~lf~~~-C~~CH~~ 29 (112)
++..+... |..||.-
T Consensus 42 ~~~~~h~~~C~~CH~~ 57 (75)
T 3h33_A 42 DKVMAHGKGCKGCHEE 57 (75)
T ss_dssp SHHHHTTTTTHHHHHH
T ss_pred hHhHHhcChhHHHhhh
Confidence 34556666 9999964
No 156
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=29.02 E-value=41 Score=20.94 Aligned_cols=17 Identities=12% Similarity=0.259 Sum_probs=14.7
Q ss_pred CCCCHHHHHHHHHHHHh
Q 033761 93 GLKKPQDRADLIAYLKQ 109 (112)
Q Consensus 93 ~~ls~~e~~~l~ayl~~ 109 (112)
+.||++|+..|.++|..
T Consensus 59 ~~Lt~~ei~~l~~~i~~ 75 (155)
T 2xzm_M 59 GLLTEDQCNKITDLIAD 75 (155)
T ss_dssp SCSCHHHHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHhC
Confidence 35899999999999875
No 157
>3h4n_A Cytochrome C7, cytochrome C3; multiheme cytochrome, geobacter sulfurreducen electron transport; HET: HEM; 1.35A {Geobacter sulfurreducens} SCOP: a.138.1.1
Probab=28.97 E-value=13 Score=19.83 Aligned_cols=8 Identities=38% Similarity=1.227 Sum_probs=6.7
Q ss_pred cCCccccC
Q 033761 22 KCAQCHTV 29 (112)
Q Consensus 22 ~C~~CH~~ 29 (112)
.|..||..
T Consensus 27 ~C~~CH~~ 34 (72)
T 3h4n_A 27 ECKACHET 34 (72)
T ss_dssp GGGGTSSS
T ss_pred ChhhhcCC
Confidence 59999973
No 158
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=28.75 E-value=24 Score=26.08 Aligned_cols=7 Identities=43% Similarity=1.388 Sum_probs=4.7
Q ss_pred cCCcccc
Q 033761 22 KCAQCHT 28 (112)
Q Consensus 22 ~C~~CH~ 28 (112)
.|.+||+
T Consensus 35 ~C~~CH~ 41 (566)
T 1qo8_A 35 QCKSCHG 41 (566)
T ss_dssp HHHHHHC
T ss_pred HHhhhCc
Confidence 4777775
No 159
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=28.64 E-value=42 Score=21.90 Aligned_cols=19 Identities=16% Similarity=0.114 Sum_probs=14.9
Q ss_pred CCCCCCHHHHHHHHHHHHh
Q 033761 91 FPGLKKPQDRADLIAYLKQ 109 (112)
Q Consensus 91 ~~~~ls~~e~~~l~ayl~~ 109 (112)
....-+++|+..++.||.+
T Consensus 217 l~R~g~peevA~~v~fL~S 235 (256)
T 4fs3_A 217 LKRNVDQVEVGKTAAYLLS 235 (256)
T ss_dssp TSSCCCHHHHHHHHHHHHS
T ss_pred CCCCcCHHHHHHHHHHHhC
Confidence 3334579999999999975
No 160
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=28.28 E-value=41 Score=20.21 Aligned_cols=16 Identities=13% Similarity=0.146 Sum_probs=14.0
Q ss_pred CCCHHHHHHHHHHHHh
Q 033761 94 LKKPQDRADLIAYLKQ 109 (112)
Q Consensus 94 ~ls~~e~~~l~ayl~~ 109 (112)
.||++|+..|.++|..
T Consensus 47 ~Lt~~ei~~l~~~i~~ 62 (126)
T 2vqe_M 47 DLTEAEVVRLREYVEN 62 (126)
T ss_dssp GCCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5799999999999863
No 161
>3ubr_A Cytochrome C-552; DECA-heme, electron transfer, redox, CYMA, oxidoreductase; HET: HEC; 2.59A {Shewanella oneidensis}
Probab=27.97 E-value=16 Score=26.70 Aligned_cols=8 Identities=63% Similarity=1.269 Sum_probs=6.8
Q ss_pred cCCccccC
Q 033761 22 KCAQCHTV 29 (112)
Q Consensus 22 ~C~~CH~~ 29 (112)
.|++||..
T Consensus 167 VCaQCHve 174 (439)
T 3ubr_A 167 VCAQCHVE 174 (439)
T ss_dssp TTTTTSSC
T ss_pred HHHhccce
Confidence 59999974
No 162
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=27.96 E-value=95 Score=18.13 Aligned_cols=21 Identities=10% Similarity=0.059 Sum_probs=16.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHh
Q 033761 89 MVFPGLKKPQDRADLIAYLKQ 109 (112)
Q Consensus 89 m~~~~~ls~~e~~~l~ayl~~ 109 (112)
+.|-.-||++||..=|.|+.+
T Consensus 16 fSyLP~lt~eqI~kQV~Yll~ 36 (110)
T 1svd_M 16 FSYLPPMNAERIRAQIKYAIA 36 (110)
T ss_dssp TTTSCCCCHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHH
Confidence 445566899999999999865
No 163
>1oah_A Cytochrome C nitrite reductase; nitrogen cycle, respiratory nitrite ammonification; HET: HEM; 2.3A {Desulfovibrio desulfuricans} SCOP: a.138.1.3
Probab=27.94 E-value=15 Score=27.41 Aligned_cols=9 Identities=44% Similarity=1.125 Sum_probs=7.5
Q ss_pred CCccccCcC
Q 033761 23 CAQCHTVEK 31 (112)
Q Consensus 23 C~~CH~~~~ 31 (112)
|..||++..
T Consensus 188 C~dCHgp~s 196 (519)
T 1oah_A 188 CANCHDPAT 196 (519)
T ss_dssp GGGTBCTTT
T ss_pred hhhcCCccc
Confidence 999998754
No 164
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=27.63 E-value=42 Score=19.73 Aligned_cols=18 Identities=11% Similarity=-0.005 Sum_probs=14.5
Q ss_pred CCCHHHHHHHHHHHHhcc
Q 033761 94 LKKPQDRADLIAYLKQST 111 (112)
Q Consensus 94 ~ls~~e~~~l~ayl~~l~ 111 (112)
.+|++|++.|..+|..+.
T Consensus 106 ~ls~eE~~~L~~lL~~~~ 123 (138)
T 2g9w_A 106 RVGADEADALRRALAELE 123 (138)
T ss_dssp HSCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhh
Confidence 368999999999987653
No 165
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=27.56 E-value=68 Score=18.71 Aligned_cols=21 Identities=14% Similarity=0.184 Sum_probs=16.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHh
Q 033761 89 MVFPGLKKPQDRADLIAYLKQ 109 (112)
Q Consensus 89 m~~~~~ls~~e~~~l~ayl~~ 109 (112)
+.|-.-||++||..=|.|+.+
T Consensus 14 fSyLP~lt~eqI~kQI~Yll~ 34 (109)
T 1rbl_M 14 FSYLPPLSDRQIAAQIEYMIE 34 (109)
T ss_dssp TTTSSCCCHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHH
Confidence 555556899999999999865
No 166
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=27.08 E-value=44 Score=20.59 Aligned_cols=16 Identities=0% Similarity=0.146 Sum_probs=14.1
Q ss_pred CCCHHHHHHHHHHHHh
Q 033761 94 LKKPQDRADLIAYLKQ 109 (112)
Q Consensus 94 ~ls~~e~~~l~ayl~~ 109 (112)
.||++|+..|.++|..
T Consensus 60 ~Lt~~ei~~l~~~i~~ 75 (146)
T 3u5c_S 60 ELTQEELERIVQIMQN 75 (146)
T ss_dssp SCCHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHh
Confidence 5899999999999864
No 167
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=26.99 E-value=26 Score=15.83 Aligned_cols=9 Identities=44% Similarity=1.051 Sum_probs=7.1
Q ss_pred cCCccccCc
Q 033761 22 KCAQCHTVE 30 (112)
Q Consensus 22 ~C~~CH~~~ 30 (112)
+|.+|++..
T Consensus 23 kC~aC~tpk 31 (33)
T 3gj3_B 23 KCVACETPK 31 (33)
T ss_dssp BCTTTCCBC
T ss_pred EEcccCCCC
Confidence 699998754
No 168
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=26.31 E-value=16 Score=27.08 Aligned_cols=9 Identities=44% Similarity=1.239 Sum_probs=7.2
Q ss_pred cCCccccCc
Q 033761 22 KCAQCHTVE 30 (112)
Q Consensus 22 ~C~~CH~~~ 30 (112)
.|..||++.
T Consensus 13 ~C~~CH~~~ 21 (571)
T 1y0p_A 13 ECDSCHTPD 21 (571)
T ss_dssp CGGGTSCTT
T ss_pred ChhhcCCCc
Confidence 699999864
No 169
>1ft5_A Cytochrome C554; heme-stacking, electron transport; HET: HEM; 1.60A {Nitrosomonas europaea} SCOP: a.138.1.3 PDB: 1bvb_A* 1ft6_A*
Probab=26.08 E-value=18 Score=23.52 Aligned_cols=10 Identities=30% Similarity=0.833 Sum_probs=7.9
Q ss_pred hcCCccccCc
Q 033761 21 TKCAQCHTVE 30 (112)
Q Consensus 21 ~~C~~CH~~~ 30 (112)
..|..||...
T Consensus 58 ~~C~~CH~~~ 67 (211)
T 1ft5_A 58 KDCVGCHVDG 67 (211)
T ss_dssp TTTGGGSBSS
T ss_pred ccccccCCCc
Confidence 3599999864
No 170
>3v2d_4 50S ribosomal protein L31; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_3 2hgj_3 2hgu_3 2j03_4 2v47_4 2v49_4 2wdi_4 2wdj_4 2wdl_4 2wdn_4 2wh2_4 2wrj_4 2wrl_4 2wro_4 2wrr_4 2x9s_4 2x9u_4 2xg0_4 2xg2_4 2xqe_4 ...
Probab=25.50 E-value=20 Score=19.35 Aligned_cols=9 Identities=33% Similarity=1.110 Sum_probs=6.9
Q ss_pred hcCCccccC
Q 033761 21 TKCAQCHTV 29 (112)
Q Consensus 21 ~~C~~CH~~ 29 (112)
..|+.||-.
T Consensus 34 di~S~~HPF 42 (71)
T 3v2d_4 34 EVCSKCHPF 42 (71)
T ss_dssp SCCTTTSSS
T ss_pred EecCCCCCC
Confidence 369999963
No 171
>3bxu_A Cytochrome C3; multiheme cytochromes, electron transport; HET: HEM; 1.35A {Geobacter sulfurreducens} PDB: 1os6_A* 2ldo_A*
Probab=25.46 E-value=14 Score=19.57 Aligned_cols=14 Identities=21% Similarity=0.691 Sum_probs=10.2
Q ss_pred HHHHH-hcCCccccC
Q 033761 16 EKIFK-TKCAQCHTV 29 (112)
Q Consensus 16 ~~lf~-~~C~~CH~~ 29 (112)
+..+. ..|..||..
T Consensus 43 ~~~~~~~~C~~CH~~ 57 (71)
T 3bxu_A 43 KEMAHGKSCKGCHEE 57 (71)
T ss_dssp HHHHHTTTTHHHHHH
T ss_pred hhccccCHHHHHhcc
Confidence 45665 579999963
No 172
>3g27_A 82 prophage-derived uncharacterized protein YBCO; E.coli, prophage-associated, zinc-binding, structural genomi 2; 2.10A {Escherichia coli k-12}
Probab=25.31 E-value=8.7 Score=22.08 Aligned_cols=10 Identities=30% Similarity=0.846 Sum_probs=7.5
Q ss_pred cCCccccCcC
Q 033761 22 KCAQCHTVEK 31 (112)
Q Consensus 22 ~C~~CH~~~~ 31 (112)
.|+.||..=+
T Consensus 53 ~Cs~CH~~iD 62 (96)
T 3g27_A 53 ACSACHDEID 62 (96)
T ss_dssp ECHHHHHHHT
T ss_pred hHHHHHHHHh
Confidence 4999998543
No 173
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=24.97 E-value=29 Score=16.40 Aligned_cols=9 Identities=0% Similarity=0.065 Sum_probs=7.4
Q ss_pred CCHHHHHHH
Q 033761 95 KKPQDRADL 103 (112)
Q Consensus 95 ls~~e~~~l 103 (112)
|||+|+++|
T Consensus 23 ltDEeLD~m 31 (39)
T 3lqv_P 23 LSDEELDAM 31 (39)
T ss_dssp CCHHHHHHT
T ss_pred CCHHHHHHh
Confidence 689999876
No 174
>1vs6_Z 50S ribosomal protein L31; ribosome, kasugamycin; 3.46A {Escherichia coli} SCOP: d.325.1.2 PDB: 1vs8_Z 2aw4_Z 2awb_Z 2j28_Z 2rdo_Z 2vhm_Z 2vhn_Z 3bbx_Z 3e1b_S 3e1d_S 3iyx_A 3iyy_A 3izt_b* 3izu_b* 3j0t_2* 3j0w_2* 3j0y_2* 3j11_2* 3j12_2* 3j14_2*
Probab=24.49 E-value=22 Score=19.07 Aligned_cols=9 Identities=33% Similarity=1.113 Sum_probs=7.1
Q ss_pred hcCCccccC
Q 033761 21 TKCAQCHTV 29 (112)
Q Consensus 21 ~~C~~CH~~ 29 (112)
..|+.||-.
T Consensus 35 di~s~~HPF 43 (70)
T 1vs6_Z 35 DVCSKCHPF 43 (70)
T ss_dssp BCCSSSCCB
T ss_pred eecCCCCcc
Confidence 469999963
No 175
>2ozy_A Cytochrome C-type protein NRFB; pentaheme C-type cytochrome, electron transport; HET: HEC; 1.74A {Escherichia coli} PDB: 2p0b_A*
Probab=24.38 E-value=22 Score=21.76 Aligned_cols=10 Identities=30% Similarity=0.866 Sum_probs=7.2
Q ss_pred HhcCCccccC
Q 033761 20 KTKCAQCHTV 29 (112)
Q Consensus 20 ~~~C~~CH~~ 29 (112)
...|.+||+.
T Consensus 85 ~~~C~~CH~~ 94 (163)
T 2ozy_A 85 NSVCMSCHLP 94 (163)
T ss_dssp HHHHTTTCCH
T ss_pred cChhhhhCCC
Confidence 3469999974
No 176
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=24.30 E-value=1.2e+02 Score=18.18 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=17.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhc
Q 033761 89 MVFPGLKKPQDRADLIAYLKQS 110 (112)
Q Consensus 89 m~~~~~ls~~e~~~l~ayl~~l 110 (112)
+.|-..||++||..=|.||.+.
T Consensus 15 fSyLP~lt~eqI~kQI~Yll~q 36 (128)
T 1wdd_S 15 LSYLPPLTVEDLLKQIEYLLRS 36 (128)
T ss_dssp TTTSSCCCHHHHHHHHHHHHHT
T ss_pred cccCCCCCHHHHHHHHHHHHHC
Confidence 4455568999999999998653
No 177
>1b4u_A LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: a.88.1.1 PDB: 1bou_A
Probab=24.07 E-value=26 Score=21.51 Aligned_cols=31 Identities=13% Similarity=0.297 Sum_probs=20.4
Q ss_pred cHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 033761 69 EEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIA 105 (112)
Q Consensus 69 ~~~~l~~~l~~~~~~~~~~~m~~~~~ls~~e~~~l~a 105 (112)
+.++..+|..||..+... | -||++|+++|.+
T Consensus 46 ~~~~RerF~aDpeA~l~~----~--gLTeEEr~AV~~ 76 (139)
T 1b4u_A 46 KAENRERFKADESAYLDE----W--NLTPAAKAAVLA 76 (139)
T ss_dssp SHHHHHHHHHCHHHHHHT----T--TCCHHHHHHHHH
T ss_pred CHHHHHHHHhCHHHHHHH----c--CCCHHHHHHHHc
Confidence 466777777776643321 2 278999998864
No 178
>2rdz_A Cytochrome C-552; decaheme, reductase, calcium, electron transport, iron, metal-binding, oxidoreductase, periplasm, transport; HET: HEC; 1.74A {Escherichia coli} SCOP: a.138.1.3 PDB: 1gu6_A* 3l1t_A* 3tor_A* 2rf7_A*
Probab=24.02 E-value=16 Score=26.77 Aligned_cols=9 Identities=44% Similarity=0.959 Sum_probs=7.4
Q ss_pred cCCccccCc
Q 033761 22 KCAQCHTVE 30 (112)
Q Consensus 22 ~C~~CH~~~ 30 (112)
.|++||...
T Consensus 182 vCaqCH~~y 190 (452)
T 2rdz_A 182 VCGQCHVEY 190 (452)
T ss_dssp HHTTTSSCC
T ss_pred hhhhccccc
Confidence 599999854
No 179
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=23.16 E-value=54 Score=22.04 Aligned_cols=20 Identities=10% Similarity=0.187 Sum_probs=15.1
Q ss_pred CCCCCCCHHHHHHHHHHHHh
Q 033761 90 VFPGLKKPQDRADLIAYLKQ 109 (112)
Q Consensus 90 ~~~~~ls~~e~~~l~ayl~~ 109 (112)
|....-+++|+..++.||.+
T Consensus 234 PlgR~g~peeiA~~v~FLaS 253 (273)
T 4fgs_A 234 PMGRVGRAEEVAAAALFLAS 253 (273)
T ss_dssp TTSSCBCHHHHHHHHHHHHS
T ss_pred CCCCCcCHHHHHHHHHHHhC
Confidence 33334479999999999975
No 180
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=23.05 E-value=20 Score=18.01 Aligned_cols=11 Identities=27% Similarity=0.875 Sum_probs=7.7
Q ss_pred HHhcCCccccC
Q 033761 19 FKTKCAQCHTV 29 (112)
Q Consensus 19 f~~~C~~CH~~ 29 (112)
++..|..||+.
T Consensus 8 ~~~~C~~C~Gs 18 (53)
T 3lcz_A 8 LETTCPNCNGS 18 (53)
T ss_dssp HEEECTTTTTS
T ss_pred eeccCcCCccc
Confidence 34569999973
No 181
>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*
Probab=22.74 E-value=56 Score=21.66 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=15.8
Q ss_pred CCCCCCCHHHHHHHHHHHHh
Q 033761 90 VFPGLKKPQDRADLIAYLKQ 109 (112)
Q Consensus 90 ~~~~~ls~~e~~~l~ayl~~ 109 (112)
|....-+++|+..++.||.+
T Consensus 221 PlgR~g~peevA~~v~fLaS 240 (261)
T 4h15_A 221 PLGRPAKPEEVANLIAFLAS 240 (261)
T ss_dssp TTSSCBCHHHHHHHHHHHHS
T ss_pred CCCCCcCHHHHHHHHHHHhC
Confidence 44445589999999999975
No 182
>1nkw_Y 50S ribosomal protein L31; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_Y* 1nwy_Y* 1pnu_Y 1pny_Y 1sm1_Y* 1vor_1 1vou_1 1vow_1 1voy_1 1vp0_1 1xbp_Y* 1yl3_4 2b66_4 2b9n_4 2b9p_4
Probab=22.67 E-value=24 Score=19.13 Aligned_cols=9 Identities=11% Similarity=0.135 Sum_probs=6.9
Q ss_pred hcCCccccC
Q 033761 21 TKCAQCHTV 29 (112)
Q Consensus 21 ~~C~~CH~~ 29 (112)
..|+.||-.
T Consensus 34 di~s~~HPF 42 (73)
T 1nkw_Y 34 DVWSGVHPF 42 (73)
T ss_pred EECCCCCcC
Confidence 459999963
No 183
>3cao_A Cytochrome C3; tetraheme, oxidised form, electron transport; HET: HEM; 1.60A {Desulfovibrio africanus} SCOP: a.138.1.1 PDB: 3car_A*
Probab=22.64 E-value=20 Score=20.38 Aligned_cols=9 Identities=44% Similarity=1.346 Sum_probs=7.1
Q ss_pred cCCccccCc
Q 033761 22 KCAQCHTVE 30 (112)
Q Consensus 22 ~C~~CH~~~ 30 (112)
.|..||+..
T Consensus 58 ~C~~CH~~~ 66 (103)
T 3cao_A 58 PCSDCHALE 66 (103)
T ss_dssp CGGGTCCSS
T ss_pred chhhhcCcc
Confidence 599999753
No 184
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=22.10 E-value=61 Score=18.25 Aligned_cols=15 Identities=13% Similarity=0.253 Sum_probs=13.2
Q ss_pred CHHHHHHHHHHHHhc
Q 033761 96 KPQDRADLIAYLKQS 110 (112)
Q Consensus 96 s~~e~~~l~ayl~~l 110 (112)
.++|+..|..||..+
T Consensus 29 ~~~DV~~l~~yL~~l 43 (97)
T 4fjo_A 29 MEEDILQVVRYCTDL 43 (97)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 489999999999865
No 185
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=21.73 E-value=56 Score=19.46 Aligned_cols=15 Identities=13% Similarity=0.257 Sum_probs=13.2
Q ss_pred CHHHHHHHHHHHHhc
Q 033761 96 KPQDRADLIAYLKQS 110 (112)
Q Consensus 96 s~~e~~~l~ayl~~l 110 (112)
.++|+..|+.||..|
T Consensus 56 ~~~DV~~l~~yL~~l 70 (124)
T 3vu7_H 56 MEEDILQVVKYCTDL 70 (124)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 489999999999865
No 186
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=21.57 E-value=25 Score=27.18 Aligned_cols=11 Identities=27% Similarity=0.782 Sum_probs=8.5
Q ss_pred hcCCccccCcC
Q 033761 21 TKCAQCHTVEK 31 (112)
Q Consensus 21 ~~C~~CH~~~~ 31 (112)
.+|+.||..+.
T Consensus 493 ~~C~~CHn~~~ 503 (669)
T 3pmq_A 493 GQCQLCHNPNM 503 (669)
T ss_dssp TTGGGTSSTTS
T ss_pred CcccCcCCCCC
Confidence 36999998753
No 187
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=21.12 E-value=59 Score=21.48 Aligned_cols=20 Identities=15% Similarity=0.140 Sum_probs=15.1
Q ss_pred CCCCCCCHHHHHHHHHHHHh
Q 033761 90 VFPGLKKPQDRADLIAYLKQ 109 (112)
Q Consensus 90 ~~~~~ls~~e~~~l~ayl~~ 109 (112)
|....-+++|+..++.||.+
T Consensus 203 PlgR~g~peeiA~~v~fLaS 222 (242)
T 4b79_A 203 PLARWGEAPEVASAAAFLCG 222 (242)
T ss_dssp TTCSCBCHHHHHHHHHHHTS
T ss_pred CCCCCcCHHHHHHHHHHHhC
Confidence 33334479999999999965
No 188
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=21.03 E-value=24 Score=17.76 Aligned_cols=11 Identities=18% Similarity=0.845 Sum_probs=8.2
Q ss_pred HHhcCCccccC
Q 033761 19 FKTKCAQCHTV 29 (112)
Q Consensus 19 f~~~C~~CH~~ 29 (112)
+...|..||+.
T Consensus 8 ~~~~C~~C~Gs 18 (53)
T 2bx9_A 8 LEVACPKCERA 18 (53)
T ss_dssp HEEECTTTTTS
T ss_pred ccccCCCCcce
Confidence 44569999984
No 189
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=20.96 E-value=60 Score=15.18 Aligned_cols=10 Identities=10% Similarity=0.215 Sum_probs=7.2
Q ss_pred CCHHHHHHHH
Q 033761 95 KKPQDRADLI 104 (112)
Q Consensus 95 ls~~e~~~l~ 104 (112)
||++|+.+|.
T Consensus 1 LseEEk~~I~ 10 (38)
T 3l9k_W 1 LSEEQKQMII 10 (38)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHh
Confidence 5788887764
No 190
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=20.81 E-value=75 Score=20.95 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=15.4
Q ss_pred CCCCCCCHHHHHHHHHHHHh
Q 033761 90 VFPGLKKPQDRADLIAYLKQ 109 (112)
Q Consensus 90 ~~~~~ls~~e~~~l~ayl~~ 109 (112)
|....-+++|+..++.||.+
T Consensus 195 Pl~R~g~pediA~~v~fL~s 214 (247)
T 3ged_A 195 PAGKVGTPKDISNMVLFLCQ 214 (247)
T ss_dssp TTSSCBCHHHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHHh
Confidence 33444589999999999975
No 191
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=20.71 E-value=63 Score=18.46 Aligned_cols=13 Identities=8% Similarity=0.355 Sum_probs=11.6
Q ss_pred CHHHHHHHHHHHH
Q 033761 96 KPQDRADLIAYLK 108 (112)
Q Consensus 96 s~~e~~~l~ayl~ 108 (112)
||+|++++..|.-
T Consensus 72 SDeE~kAMlsyy~ 84 (106)
T 2npt_A 72 SDEEMKAMLSYYY 84 (106)
T ss_dssp SHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHH
Confidence 8999999999874
No 192
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=20.64 E-value=42 Score=16.48 Aligned_cols=10 Identities=20% Similarity=0.943 Sum_probs=7.6
Q ss_pred hcCCccccCc
Q 033761 21 TKCAQCHTVE 30 (112)
Q Consensus 21 ~~C~~CH~~~ 30 (112)
.+|..|+.++
T Consensus 28 r~C~rCw~LR 37 (46)
T 2c6a_A 28 SHCNRCWALR 37 (46)
T ss_dssp SSCTTTCCCC
T ss_pred chhhHHHhhc
Confidence 4688888875
No 193
>1v33_A DNA primase small subunit; nucleotidyl transferase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: DNA; 1.80A {Pyrococcus horikoshii} SCOP: d.264.1.1 PDB: 1v34_A* 1g71_A*
Probab=20.21 E-value=56 Score=23.28 Aligned_cols=16 Identities=6% Similarity=0.347 Sum_probs=14.0
Q ss_pred CCCHHHHHHHHHHHHh
Q 033761 94 LKKPQDRADLIAYLKQ 109 (112)
Q Consensus 94 ~ls~~e~~~l~ayl~~ 109 (112)
.|+.+++.+|+.||..
T Consensus 181 ~l~~~~R~~IvdYl~~ 196 (366)
T 1v33_A 181 KLDSKSRERILSFVSA 196 (366)
T ss_dssp TCCHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHhhhEEe
Confidence 3799999999999964
No 194
>1gyo_A Cytochrome C3, A dimeric class III C-type cytochrome; electron transport, DI-tetraheme, AB initio, electron transfer; HET: HEC; 1.2A {Desulfovibrio gigas} SCOP: a.138.1.1
Probab=20.06 E-value=24 Score=20.38 Aligned_cols=9 Identities=56% Similarity=1.198 Sum_probs=7.2
Q ss_pred cCCccccCc
Q 033761 22 KCAQCHTVE 30 (112)
Q Consensus 22 ~C~~CH~~~ 30 (112)
.|..||+..
T Consensus 51 ~C~~CH~~~ 59 (109)
T 1gyo_A 51 KCADCHIDR 59 (109)
T ss_dssp CGGGTCCCC
T ss_pred chhhhcCCc
Confidence 699999843
Done!