BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033762
(112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EO4|A Chain A, The Crystal Structure Of A Domain From Methanocaldococcus
Jannaschii Dsm 2661
pdb|3EO4|B Chain B, The Crystal Structure Of A Domain From Methanocaldococcus
Jannaschii Dsm 2661
pdb|3EO4|C Chain C, The Crystal Structure Of A Domain From Methanocaldococcus
Jannaschii Dsm 2661
pdb|3EO4|D Chain D, The Crystal Structure Of A Domain From Methanocaldococcus
Jannaschii Dsm 2661
Length = 164
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 2 VGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGE 61
VG VN+ + DN E+ I+I E GK + + +V +++ + ++N G A+I E
Sbjct: 78 VGSVNVSQLNTDN---PEIGILIGEFFLWGKHIGRHSVSLVLKW-LKNIGYKKAHARILE 133
Query: 62 SNGASLRLFQKLGFE 76
+N S++LF+ LGF+
Sbjct: 134 NNIRSIKLFESLGFK 148
>pdb|3TTH|A Chain A, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|B Chain B, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|C Chain C, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|D Chain D, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|E Chain E, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|F Chain F, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|G Chain G, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|H Chain H, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|I Chain I, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|J Chain J, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|K Chain K, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|L Chain L, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
Length = 170
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 23 MIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 75
+I P GKG A +A + + YA +H + E N A+L +++K GF
Sbjct: 89 IIISPGEEGKGYATEATDLTVEYAFSILNLHKIYLLVDEDNPAALHIYRKSGF 141
>pdb|2FL4|A Chain A, The Crystal Structure Of The SpermineSPERMIDINE
ACETYLTRANSFERASE From Enterococcus Faecalis
Length = 149
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 31/53 (58%)
Query: 23 MIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 75
+ + + +G+G K A ++M +E + + + ++N +++RL+Q+LGF
Sbjct: 76 FLIDQRFQGQGYGKAACRLLMLKLIEKYQTNKLYLSVYDTNSSAIRLYQQLGF 128
>pdb|3DR8|A Chain A, Structure Of Ynca, A Putative Acetyltransferase From
Salmonella Typhimurium With Its Cofactor Acetyl-Coa
pdb|3DR8|B Chain B, Structure Of Ynca, A Putative Acetyltransferase From
Salmonella Typhimurium With Its Cofactor Acetyl-Coa
pdb|3DR6|A Chain A, Structure Of Ynca, A Putative Acetyltransferase From
Salmonella Typhimurium
pdb|3DR6|B Chain B, Structure Of Ynca, A Putative Acetyltransferase From
Salmonella Typhimurium
pdb|3DR6|C Chain C, Structure Of Ynca, A Putative Acetyltransferase From
Salmonella Typhimurium
Length = 174
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 32/80 (40%), Gaps = 11/80 (13%)
Query: 26 EPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIFK 85
P +GKGL + +L + G HV A I N AS+RL LGF
Sbjct: 91 HPAHQGKGLGRK-LLSRLIDEARRCGKHVXVAGIESQNAASIRLHHSLGF---------- 139
Query: 86 EVTLELPVENAKREELLVLT 105
VT + P K L LT
Sbjct: 140 TVTAQXPQVGVKFGRWLDLT 159
>pdb|2JLM|A Chain A, Structure Of A Putative Acetyltransferase (Aciad1637) From
Acinetobacter Baylyi Adp1
pdb|2JLM|B Chain B, Structure Of A Putative Acetyltransferase (Aciad1637) From
Acinetobacter Baylyi Adp1
pdb|2JLM|C Chain C, Structure Of A Putative Acetyltransferase (Aciad1637) From
Acinetobacter Baylyi Adp1
pdb|2JLM|D Chain D, Structure Of A Putative Acetyltransferase (Aciad1637) From
Acinetobacter Baylyi Adp1
pdb|2JLM|E Chain E, Structure Of A Putative Acetyltransferase (Aciad1637) From
Acinetobacter Baylyi Adp1
pdb|2JLM|F Chain F, Structure Of A Putative Acetyltransferase (Aciad1637) From
Acinetobacter Baylyi Adp1
Length = 182
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 30 RGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 75
RG GL+K + ++ AVE+ +HV I +N AS++L QKLGF
Sbjct: 103 RGLGLSKHLMNELIKRAVES-EVHVMVGCIDATNVASIQLHQKLGF 147
>pdb|1VHS|A Chain A, Crystal Structure Of A Putative Phosphinothricin N-
Acetyltransferase
pdb|1VHS|B Chain B, Crystal Structure Of A Putative Phosphinothricin N-
Acetyltransferase
Length = 175
Score = 31.2 bits (69), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 18 AEVEIMIAEPKSRGKGLAKDAVLMMMAYAV-ENFGIHVFRAKIGESNGASLRLFQKLGF 75
AEV I I E RGKG+ + L+ A + N GI A I N SL+LF+K GF
Sbjct: 83 AEVSIYIDE-ACRGKGVG--SYLLQEALRIAPNLGIRSLXAFIFGHNKPSLKLFEKHGF 138
>pdb|3EC4|A Chain A, Crystal Structure Of Putative Acetyltransferase From The
Gnat Family (yp_497011.1) From Novosphingobium
Aromaticivorans Dsm 12444 At 1.80 A Resolution
pdb|3EC4|B Chain B, Crystal Structure Of Putative Acetyltransferase From The
Gnat Family (yp_497011.1) From Novosphingobium
Aromaticivorans Dsm 12444 At 1.80 A Resolution
Length = 228
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 17 LAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 76
LAEV + P+ RG+GLA + ++A + + SN +++RL++ LGF
Sbjct: 157 LAEVSGVCTWPEYRGRGLAARLIRKVIAGXAARGEVPYLHSYA--SNASAIRLYESLGFR 214
>pdb|3KKW|A Chain A, Crystal Structure Of His-Tagged Form Of Pa4794 Protein
Length = 182
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIG 60
++G N Y + + + M+ P +RG G+A+ + +M A E + + +
Sbjct: 83 VLGFANFY--QWQHGDFCALGNMMVAPAARGLGVARYLIGVMENLAREQYKARLMKISCF 140
Query: 61 ESNGASLRLFQKLGFEDISYSE 82
+N A L L+ +LG++ + +E
Sbjct: 141 NANAAGLLLYTQLGYQPRAIAE 162
>pdb|2J8M|A Chain A, Structure Of P. Aeruginosa Acetyltransferase Pa4866
pdb|2J8M|B Chain B, Structure Of P. Aeruginosa Acetyltransferase Pa4866
pdb|2J8N|A Chain A, Structure Of P. Aeruginosa Acetyltransferase Pa4866 Solved
At Room Temperature
pdb|2J8N|B Chain B, Structure Of P. Aeruginosa Acetyltransferase Pa4866 Solved
At Room Temperature
pdb|2J8R|A Chain A, Structure Of P. Aeruginosa Acetyltransferase Pa4866 Solved
In Complex With L-Methionine Sulfoximine
pdb|2J8R|B Chain B, Structure Of P. Aeruginosa Acetyltransferase Pa4866 Solved
In Complex With L-Methionine Sulfoximine
Length = 172
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 30 RGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 76
RGKGL + ++ A G+HV A I N AS+ L ++LGFE
Sbjct: 95 RGKGLGVQLLQALIERARAQ-GLHVMVAAIESGNAASIGLHRRLGFE 140
>pdb|3PGP|A Chain A, Crystal Structure Of Pa4794 - Gnat Superfamily Protein In
Complex With Accoa
Length = 162
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIG 60
++G N Y + + + M+ P +RG G+A+ + +M A E + + +
Sbjct: 63 VLGFANFY--QWQHGDFCALGNMMVAPAARGLGVARYLIGVMENLAREQYKARLMKISCF 120
Query: 61 ESNGASLRLFQKLGFEDISYSE 82
+N A L L+ +LG++ + +E
Sbjct: 121 NANAAGLLLYTQLGYQPRAIAE 142
>pdb|1YR0|A Chain A, Crystal Structure Of Phosphinothricin Acetyltransferase
From Agrobacterium Tumefaciens
pdb|1YR0|B Chain B, Crystal Structure Of Phosphinothricin Acetyltransferase
From Agrobacterium Tumefaciens
pdb|1YR0|C Chain C, Crystal Structure Of Phosphinothricin Acetyltransferase
From Agrobacterium Tumefaciens
pdb|1YR0|D Chain D, Crystal Structure Of Phosphinothricin Acetyltransferase
From Agrobacterium Tumefaciens
Length = 175
Score = 30.8 bits (68), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 29 SRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS-YSEI 83
+RG G+ K ++ +A N +HV A I N AS+RL + LGF + +SE+
Sbjct: 95 ARGHGIGKRLXQALIDHAGGN-DVHVLIAAIEAENTASIRLHESLGFRVVGRFSEV 149
>pdb|1YVO|A Chain A, Hypothetical Acetyltransferase From P.Aeruginosa Pa01
pdb|1YVO|B Chain B, Hypothetical Acetyltransferase From P.Aeruginosa Pa01
Length = 172
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 30 RGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 76
RGKGL + ++ A G+HV A I N AS+ L ++LGFE
Sbjct: 95 RGKGLGVQLLQALIERARAQ-GLHVXVAAIESGNAASIGLHRRLGFE 140
>pdb|2BL1|A Chain A, Crystal Structure Of A Putative Phosphinothricin
Acetyltransferase (Pa4866) From Pseudomonas Aeruginosa
Pac1
Length = 172
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 30 RGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 76
RGKGL + ++ A G+HV A I N AS+ L ++LGFE
Sbjct: 95 RGKGLGVQLLQALIERARAQ-GLHVXVAAIESGNAASIGLHRRLGFE 140
>pdb|1S3Z|A Chain A, Aminoglycoside N-Acetyltransferase Aac(6')-Iy In Complex
With Coa And Ribostamycin
pdb|1S3Z|B Chain B, Aminoglycoside N-Acetyltransferase Aac(6')-Iy In Complex
With Coa And Ribostamycin
pdb|1S5K|A Chain A, Aminoglycoside N-Acetyltransferase Aac(6')-Iy In Complex
With Coa And N-Terminal His(6)-Tag (Crystal Form 1)
pdb|1S5K|B Chain B, Aminoglycoside N-Acetyltransferase Aac(6')-Iy In Complex
With Coa And N-Terminal His(6)-Tag (Crystal Form 1)
pdb|1S60|A Chain A, Aminoglycoside N-Acetyltransferase Aac(6')-Iy In Complex
With Coa And N-Terminal His(6)-Tag (Crystal Form 2)
pdb|2VBQ|A Chain A, Structure Of Aac(6')-Iy In Complex With Bisubstrate Analog
Coa-S-Monomethyl-Acetylneamine.
pdb|2VBQ|B Chain B, Structure Of Aac(6')-Iy In Complex With Bisubstrate Analog
Coa-S-Monomethyl-Acetylneamine
Length = 165
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 8 YMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASL 67
Y+N D+ + +E + P R +G+AK + + + N G + N S
Sbjct: 86 YVNGCDSSPVVFLEGIFVLPSFRQRGVAKQLIAAVQRWGT-NKGCREMASDTSPENTISQ 144
Query: 68 RLFQKLGFED 77
++ Q LGFE+
Sbjct: 145 KVHQALGFEE 154
>pdb|1Z4E|A Chain A, Crystal Structure Of Transcriptional Regulator From
Bacillus Halodurans C-125
pdb|1Z4E|B Chain B, Crystal Structure Of Transcriptional Regulator From
Bacillus Halodurans C-125
Length = 153
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 18 AEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 76
A +E + +RG+G+ V + A E G H+ + + +LR +++LGF+
Sbjct: 86 ATIEGVRTHSAARGQGIGSQLVCWAIERAKER-GCHLIQLTTDKQRPDALRFYEQLGFK 143
>pdb|3FBU|A Chain A, The Crystal Structure Of The Acetyltransferase (gnat
Family) From Bacillus Anthracis
pdb|3FBU|B Chain B, The Crystal Structure Of The Acetyltransferase (gnat
Family) From Bacillus Anthracis
Length = 168
Score = 28.9 bits (63), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 23 MIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLG 74
+ PK KG A +A + Y + +H A N S R+ +K+G
Sbjct: 88 WVFNPKYFNKGYASEAAQATLKYGFKEMKLHRIIATCQPENTPSYRVMEKIG 139
>pdb|1WWZ|A Chain A, Crystal Structure Of Ph1933 From Pyrococcus Horikoshii Ot3
pdb|1WWZ|B Chain B, Crystal Structure Of Ph1933 From Pyrococcus Horikoshii Ot3
Length = 159
Score = 28.5 bits (62), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 23 MIAEPKSRGKGLAKDAVLMMMAY-AVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYS 81
+ + K +GKG+ + ++ + + N I ++ +GE N ++ L++K GF+ + S
Sbjct: 91 FVVDKKFQGKGIGRKLLITCLDFLGKYNDTIELW---VGEKNYGAMNLYEKFGFKKVGKS 147
Query: 82 EIF 84
I+
Sbjct: 148 GIW 150
>pdb|2FS5|A Chain A, Crystal Structure Of Tdp-Fucosamine Acetyltransferase
(Wecd)- Apo Form
pdb|2FS5|B Chain B, Crystal Structure Of Tdp-Fucosamine Acetyltransferase
(Wecd)- Apo Form
pdb|2FT0|A Chain A, Crystal Structure Of Tdp-Fucosamine Acetyltransferase
(Wecd)- Complex With Acetyl-Coa
pdb|2FT0|B Chain B, Crystal Structure Of Tdp-Fucosamine Acetyltransferase
(Wecd)- Complex With Acetyl-Coa
Length = 235
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 56 RAKIGESNGASLRLFQKLGFEDISYSEIFKEVTLELPVEN 95
+AKI SN L Q+LGF S + EV L LPV N
Sbjct: 56 QAKIAASNTGELDALQQLGF-----SLVEGEVDLALPVNN 90
>pdb|4FD5|A Chain A, Crystal Structure Of Arylalkylamine N-Acetyltransferase 2
From Aedes Aegypti
pdb|4FD6|A Chain A, Crystal Structure Of Native Arylalkylamine
N-Acetyltransferase 2 From The Yellow Fever Mosquito,
Aedes Aegypti
Length = 222
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGA-SLRLFQKLG 74
++ E+ I+ + + RGKGLAK + A++ G V + ++ GA S R+ LG
Sbjct: 129 KIFEIRILSVDSRFRGKGLAKKLIEKSEELALDR-GFQVMKT---DATGAFSQRVVSSLG 184
Query: 75 F---EDISYSEIFKEVTLELPVENAKREELLVLT 105
F +I+Y++ E ++ V + E+L ++
Sbjct: 185 FITKCEINYTDYLDENGEQIFVVDPPHEKLKIMC 218
>pdb|3ZYY|X Chain X, Reductive Activator For Corrinoid,Iron-Sulfur Protein
pdb|3ZYY|Y Chain Y, Reductive Activator For Corrinoid,Iron-Sulfur Protein
Length = 631
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 83 IFKEVTLELPVE--NAKREELLVLTANVVRH 111
+FKEV+LELPV + R++L LTA R
Sbjct: 125 LFKEVSLELPVPTLDDPRDDLSRLTATFSRQ 155
>pdb|2GE3|A Chain A, Crystal Structure Of Probable Acetyltransferase From
Agrobacterium Tumefaciens
pdb|2GE3|B Chain B, Crystal Structure Of Probable Acetyltransferase From
Agrobacterium Tumefaciens
pdb|2GE3|C Chain C, Crystal Structure Of Probable Acetyltransferase From
Agrobacterium Tumefaciens
pdb|2GE3|D Chain D, Crystal Structure Of Probable Acetyltransferase From
Agrobacterium Tumefaciens
Length = 170
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 75
P R KGL + A E FG+H + N ++ L++K+GF
Sbjct: 95 PAYRNKGLGARLXRRTLDAAHE-FGLHRIELSVHADNARAIALYEKIGF 142
>pdb|1Y9K|A Chain A, Iaa Acetyltransferase From Bacillus Cereus Atcc 14579
pdb|1Y9K|B Chain B, Iaa Acetyltransferase From Bacillus Cereus Atcc 14579
pdb|1Y9K|C Chain C, Iaa Acetyltransferase From Bacillus Cereus Atcc 14579
pdb|1Y9K|D Chain D, Iaa Acetyltransferase From Bacillus Cereus Atcc 14579
Length = 157
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 30 RGKGLAKDAVLMMMAYAVEN---FGIHVFRAKIGESNGASLRLFQKLGFEDIS 79
+GKG+ K ++ +AVE +G G S+ + L L+QK GF S
Sbjct: 74 QGKGIGKK----LLRHAVETAKGYGXSKLEVGTGNSSVSQLALYQKCGFRIFS 122
>pdb|4B8B|A Chain A, N-Terminal Domain Of The Yeast Not1
pdb|4B8B|B Chain B, N-Terminal Domain Of The Yeast Not1
Length = 603
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 36 KDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIFKEVTLELPVEN 95
K ++L +++ A N + + R ++ S+G L FQ+ FED +Y+ + + L V+
Sbjct: 190 KQSLLYLLSIASLNLELFLQREEL--SDGPMLAYFQECFFEDFNYAPEYLILAL---VKE 244
Query: 96 AKREELLVLTANVV 109
KR LL+ V+
Sbjct: 245 MKRFVLLIENRTVI 258
>pdb|3D3F|A Chain A, Crystal Structure Of Yvgn And Cofactor Nadph From Bacillus
Subtilis
pdb|3D3F|B Chain B, Crystal Structure Of Yvgn And Cofactor Nadph From Bacillus
Subtilis
Length = 275
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 36 KDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIFKE---VTLELP 92
KD V + + FG+ VF+ + G S++ K G+ I + I+K V + +
Sbjct: 5 KDTVKLHNGVEMPWFGLGVFKVENGNEATESVKAAIKNGYRSIDTAAIYKNEEGVGIGIK 64
Query: 93 VENAKREELLVLT 105
REEL + +
Sbjct: 65 ESGVAREELFITS 77
>pdb|3F7J|A Chain A, B.Subtilis Yvgn
pdb|3F7J|B Chain B, B.Subtilis Yvgn
Length = 276
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 36 KDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIFKE---VTLELP 92
KD V + + FG+ VF+ + G S++ K G+ I + I+K V + +
Sbjct: 6 KDTVKLHNGVEMPWFGLGVFKVENGNEATESVKAAIKNGYRSIDTAAIYKNEEGVGIGIK 65
Query: 93 VENAKREELLVLT 105
REEL + +
Sbjct: 66 ESGVAREELFITS 78
>pdb|4F9J|A Chain A, Structure Of Escherichia Coli Pgab 42-655 In Complex With
Iron
pdb|4F9J|B Chain B, Structure Of Escherichia Coli Pgab 42-655 In Complex With
Iron
Length = 618
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 10/57 (17%)
Query: 53 HVFRAKIGESNGASLRLFQKLGFEDISYSEIFKEVTLELPVENAKREELL--VLTAN 107
HVF GE+NG ++ +KLG++ TLE + NA + + + VL AN
Sbjct: 209 HVFVWPYGEANGIAIEELKKLGYDXF--------FTLESGLANASQLDSIPRVLIAN 257
>pdb|3OWC|A Chain A, Crystal Structure Of Gnat Superfamily Protein Pa2578 From
Pseudomonas Aeruginosa
pdb|3OWC|B Chain B, Crystal Structure Of Gnat Superfamily Protein Pa2578 From
Pseudomonas Aeruginosa
Length = 188
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 28/55 (50%)
Query: 23 MIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 77
++ P +RG+GL + ++A A + I + + N A+ L+++ GF +
Sbjct: 99 IVLAPSARGQGLGLPXLEALLAEAFADADIERVELNVYDWNAAARHLYRRAGFRE 153
>pdb|2I6C|A Chain A, Crystal Structure Of Putative Acetyltransferase (Gnat
Family) From Pseudomonas Aeruginosa Pao1
Length = 160
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 29/56 (51%)
Query: 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82
P +RG G+A+ + + A E + + + +N A L L+ +LG++ + +E
Sbjct: 85 PAARGLGVARYLIGVXENLAREQYKARLXKISCFNANAAGLLLYTQLGYQPRAIAE 140
>pdb|4F9D|A Chain A, Structure Of Escherichia Coli Pgab 42-655 In Complex With
Nickel
pdb|4F9D|B Chain B, Structure Of Escherichia Coli Pgab 42-655 In Complex With
Nickel
Length = 618
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 10/57 (17%)
Query: 53 HVFRAKIGESNGASLRLFQKLGFEDISYSEIFKEVTLELPVENAKREELL--VLTAN 107
HVF GE+NG ++ +KLG+ ++F TLE + NA + + + VL AN
Sbjct: 209 HVFVWPYGEANGIAIEELKKLGY------DMF--FTLESGLANASQLDSIPRVLIAN 257
>pdb|3VUS|A Chain A, Escherichia Coli Pgab N-terminal Domain
pdb|3VUS|B Chain B, Escherichia Coli Pgab N-terminal Domain
Length = 268
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 53 HVFRAKIGESNGASLRLFQKLGFE 76
HVF GE+NG ++ +KLG++
Sbjct: 205 HVFVWPYGEANGIAIEELKKLGYD 228
>pdb|3IYD|F Chain F, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
Length = 613
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 76 EDISYSEIFKEVTLELPVENAKREELLVLTANVV 109
ED + ++ TLELP+++A E L T +V+
Sbjct: 515 EDSHLGDFIEDTTLELPLDSATTESLRAATHDVL 548
>pdb|4IGC|X Chain X, X-ray Crystal Structure Of Escherichia Coli Sigma70
Holoenzyme
pdb|4IGC|Y Chain Y, X-ray Crystal Structure Of Escherichia Coli Sigma70
Holoenzyme
Length = 613
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 76 EDISYSEIFKEVTLELPVENAKREELLVLTANVV 109
ED + ++ TLELP+++A E L T +V+
Sbjct: 515 EDSHLGDFIEDTTLELPLDSATTESLRAATHDVL 548
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,910,479
Number of Sequences: 62578
Number of extensions: 101368
Number of successful extensions: 313
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 288
Number of HSP's gapped (non-prelim): 34
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)