Query 033762
Match_columns 112
No_of_seqs 134 out of 2286
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 06:01:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033762.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033762hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3139 N-acetyltransferase [G 99.8 1.5E-17 3.3E-22 99.8 10.4 86 2-88 69-154 (165)
2 PF00583 Acetyltransf_1: Acety 99.8 2.6E-17 5.6E-22 90.3 10.3 75 1-76 7-83 (83)
3 TIGR02406 ectoine_EctA L-2,4-d 99.8 1.1E-17 2.3E-22 102.5 9.6 105 1-107 51-155 (157)
4 PRK10151 ribosomal-protein-L7/ 99.7 6.9E-17 1.5E-21 100.5 10.6 80 1-82 78-157 (179)
5 PRK10809 ribosomal-protein-S5- 99.7 5.1E-17 1.1E-21 102.3 9.7 81 1-82 88-168 (194)
6 TIGR02382 wecD_rffC TDP-D-fuco 99.7 6.2E-17 1.3E-21 101.9 9.7 76 1-80 110-185 (191)
7 PRK10140 putative acetyltransf 99.7 5.5E-16 1.2E-20 94.6 10.2 81 1-82 62-143 (162)
8 PF13420 Acetyltransf_4: Acety 99.7 6.6E-16 1.4E-20 93.8 10.2 81 1-83 62-142 (155)
9 PF13302 Acetyltransf_3: Acety 99.7 1E-15 2.2E-20 91.5 10.6 74 1-76 69-142 (142)
10 COG1670 RimL Acetyltransferase 99.7 4.3E-16 9.3E-21 96.5 9.0 82 1-83 79-161 (187)
11 PRK10975 TDP-fucosamine acetyl 99.7 9.9E-16 2.2E-20 96.6 10.4 76 1-80 113-188 (194)
12 PRK10146 aminoalkylphosphonic 99.7 3.6E-16 7.8E-21 93.9 7.8 78 1-79 58-137 (144)
13 PRK15130 spermidine N1-acetylt 99.7 1.2E-15 2.6E-20 95.4 10.2 79 1-81 68-146 (186)
14 TIGR01575 rimI ribosomal-prote 99.7 1.2E-15 2.7E-20 89.8 9.2 79 1-84 42-120 (131)
15 PRK03624 putative acetyltransf 99.7 1.1E-15 2.4E-20 90.8 8.5 75 1-80 56-130 (140)
16 TIGR03585 PseH pseudaminic aci 99.6 2.3E-15 5E-20 91.5 9.3 80 1-83 62-141 (156)
17 PRK09491 rimI ribosomal-protei 99.6 3.9E-15 8.5E-20 89.8 10.1 77 1-82 51-127 (146)
18 COG0456 RimI Acetyltransferase 99.6 4.3E-15 9.2E-20 91.9 9.6 84 2-86 74-160 (177)
19 PF13523 Acetyltransf_8: Acety 99.6 1E-14 2.2E-19 88.5 10.0 81 2-82 60-143 (152)
20 PTZ00330 acetyltransferase; Pr 99.6 2.9E-14 6.2E-19 85.8 9.9 75 1-79 63-140 (147)
21 PLN02706 glucosamine 6-phospha 99.6 3.4E-14 7.3E-19 86.0 9.8 76 1-80 66-144 (150)
22 PRK10314 putative acyltransfer 99.6 2.6E-14 5.7E-19 87.2 9.3 76 1-80 59-134 (153)
23 TIGR03827 GNAT_ablB putative b 99.6 1.9E-14 4.2E-19 94.8 8.6 79 1-82 169-247 (266)
24 TIGR03448 mycothiol_MshD mycot 99.6 4.4E-14 9.5E-19 93.9 10.3 79 1-81 211-289 (292)
25 PF13508 Acetyltransf_7: Acety 99.5 1.6E-13 3.5E-18 74.8 9.4 66 1-77 14-79 (79)
26 PF08445 FR47: FR47-like prote 99.5 4.2E-13 9.2E-18 74.5 9.5 60 18-79 22-81 (86)
27 PRK07757 acetyltransferase; Pr 99.5 2.6E-13 5.6E-18 82.3 9.0 72 1-81 52-123 (152)
28 TIGR03103 trio_acet_GNAT GNAT- 99.5 3.4E-13 7.3E-18 96.5 10.4 80 1-81 136-218 (547)
29 COG1247 Sortase and related ac 99.5 1.1E-12 2.4E-17 80.6 10.0 79 2-82 65-145 (169)
30 PRK10514 putative acetyltransf 99.5 3.4E-13 7.3E-18 81.1 7.7 68 1-82 61-128 (145)
31 TIGR01686 FkbH FkbH-like domai 99.5 5.6E-13 1.2E-17 90.0 9.2 73 1-78 245-319 (320)
32 PF13673 Acetyltransf_10: Acet 99.5 6.8E-13 1.5E-17 76.9 8.1 63 1-75 55-117 (117)
33 COG1246 ArgA N-acetylglutamate 99.5 1E-12 2.2E-17 79.0 8.8 75 1-82 51-125 (153)
34 PRK07922 N-acetylglutamate syn 99.4 1.3E-12 2.8E-17 80.9 9.2 71 1-80 57-127 (169)
35 KOG3216 Diamine acetyltransfer 99.4 1.3E-12 2.8E-17 78.1 8.7 79 1-80 66-146 (163)
36 PRK10562 putative acetyltransf 99.4 1E-12 2.3E-17 79.2 8.3 67 1-80 59-125 (145)
37 PHA01807 hypothetical protein 99.4 1.3E-12 2.8E-17 79.6 8.3 72 1-73 64-136 (153)
38 KOG4135 Predicted phosphogluco 99.4 1.8E-12 4E-17 77.2 8.6 90 1-90 84-180 (185)
39 PLN02825 amino-acid N-acetyltr 99.4 5.2E-12 1.1E-16 89.5 9.2 75 1-82 418-492 (515)
40 PHA00673 acetyltransferase dom 99.4 1.4E-11 3E-16 74.8 9.2 78 1-80 66-146 (154)
41 TIGR03448 mycothiol_MshD mycot 99.3 6.8E-12 1.5E-16 83.4 8.5 72 1-80 57-128 (292)
42 cd02169 Citrate_lyase_ligase C 99.3 6.9E-12 1.5E-16 83.7 8.2 67 1-79 17-83 (297)
43 PRK05279 N-acetylglutamate syn 99.3 1.5E-11 3.1E-16 86.3 9.3 74 1-81 345-418 (441)
44 TIGR01890 N-Ac-Glu-synth amino 99.3 1.8E-11 3.9E-16 85.6 8.9 74 1-81 333-406 (429)
45 PRK12308 bifunctional arginino 99.3 1.7E-11 3.6E-16 89.0 9.0 73 1-82 514-586 (614)
46 PRK09831 putative acyltransfer 99.3 1.6E-11 3.4E-16 74.2 7.1 56 18-82 73-128 (147)
47 KOG2488 Acetyltransferase (GNA 99.3 2.7E-11 5.9E-16 74.9 7.4 81 1-82 104-184 (202)
48 PF13527 Acetyltransf_9: Acety 99.3 3.4E-11 7.4E-16 70.8 7.4 72 1-78 52-127 (127)
49 COG3393 Predicted acetyltransf 99.3 6.3E-11 1.4E-15 76.8 8.8 66 13-80 197-262 (268)
50 KOG3396 Glucosamine-phosphate 99.2 3.4E-11 7.4E-16 70.8 6.5 75 1-79 66-143 (150)
51 PRK13688 hypothetical protein; 99.2 9.9E-11 2.1E-15 71.6 8.5 57 16-81 78-134 (156)
52 COG3981 Predicted acetyltransf 99.2 8.7E-11 1.9E-15 71.7 6.7 78 1-80 80-159 (174)
53 TIGR00124 cit_ly_ligase [citra 99.2 4E-10 8.7E-15 76.4 10.4 60 19-82 52-111 (332)
54 COG2153 ElaA Predicted acyltra 99.1 4.2E-10 9E-15 67.0 7.2 76 1-80 61-136 (155)
55 KOG3235 Subunit of the major N 99.1 7.9E-10 1.7E-14 66.8 7.6 86 1-86 53-141 (193)
56 KOG3138 Predicted N-acetyltran 99.1 3.4E-10 7.5E-15 70.6 6.1 71 18-88 90-160 (187)
57 KOG3397 Acetyltransferases [Ge 99.1 6E-10 1.3E-14 68.3 6.5 74 1-80 68-141 (225)
58 PRK01346 hypothetical protein; 99.1 2.1E-09 4.6E-14 74.8 9.4 74 1-80 58-136 (411)
59 PF08444 Gly_acyl_tr_C: Aralky 99.0 1.7E-09 3.7E-14 59.7 6.4 62 16-79 18-79 (89)
60 TIGR01211 ELP3 histone acetylt 99.0 2.8E-09 6E-14 76.0 9.0 76 1-80 425-516 (522)
61 KOG3234 Acetyltransferase, (GN 98.9 2.1E-08 4.5E-13 60.6 9.2 69 17-86 69-137 (173)
62 PF12746 GNAT_acetyltran: GNAT 98.9 3.5E-08 7.6E-13 65.0 10.4 64 16-84 188-251 (265)
63 COG3153 Predicted acetyltransf 98.9 1.5E-08 3.2E-13 62.6 8.1 75 1-82 57-133 (171)
64 cd04301 NAT_SF N-Acyltransfera 98.9 2.1E-08 4.6E-13 51.0 6.9 55 1-57 10-64 (65)
65 COG3818 Predicted acetyltransf 98.7 1.7E-07 3.7E-12 55.1 8.1 68 14-82 81-150 (167)
66 PF13718 GNAT_acetyltr_2: GNAT 98.6 1.9E-07 4E-12 59.0 6.7 66 16-82 89-178 (196)
67 PF14542 Acetyltransf_CG: GCN5 98.6 1.2E-06 2.6E-11 47.6 8.6 61 2-72 11-71 (78)
68 KOG4144 Arylalkylamine N-acety 98.5 2.9E-07 6.4E-12 55.6 4.5 81 16-102 100-180 (190)
69 COG1444 Predicted P-loop ATPas 98.4 1.6E-06 3.4E-11 64.1 7.4 64 16-82 530-593 (758)
70 COG0454 WecD Histone acetyltra 98.2 4.8E-06 1E-10 46.5 4.9 44 23-75 87-130 (156)
71 PF12568 DUF3749: Acetyltransf 98.1 4.9E-05 1.1E-09 44.8 8.5 71 2-79 50-124 (128)
72 COG4552 Eis Predicted acetyltr 98.0 1.8E-05 3.8E-10 53.9 5.4 58 16-79 69-126 (389)
73 COG2388 Predicted acetyltransf 97.9 3.7E-05 8E-10 43.5 5.2 38 16-54 38-75 (99)
74 COG3053 CitC Citrate lyase syn 97.9 7.5E-05 1.6E-09 49.8 7.1 59 19-81 58-116 (352)
75 COG5628 Predicted acetyltransf 97.8 0.00015 3.3E-09 42.2 6.3 71 1-76 48-119 (143)
76 PF11039 DUF2824: Protein of u 97.5 0.0031 6.7E-08 37.4 8.7 78 2-85 50-127 (151)
77 PF13880 Acetyltransf_13: ESCO 97.3 0.001 2.2E-08 35.3 4.5 29 17-45 5-33 (70)
78 COG3882 FkbH Predicted enzyme 97.1 0.00051 1.1E-08 48.9 3.1 76 3-80 473-550 (574)
79 cd04264 DUF619-NAGS DUF619 dom 96.8 0.012 2.6E-07 33.4 6.5 58 3-67 21-78 (99)
80 PF06852 DUF1248: Protein of u 96.8 0.031 6.6E-07 35.2 8.7 61 15-80 76-137 (181)
81 TIGR03694 exosort_acyl putativ 96.7 0.025 5.4E-07 37.2 8.3 61 15-79 109-197 (241)
82 COG1243 ELP3 Histone acetyltra 96.6 0.003 6.5E-08 44.8 3.9 50 26-79 459-508 (515)
83 PF01853 MOZ_SAS: MOZ/SAS fami 96.5 0.015 3.2E-07 36.7 6.0 45 5-49 68-112 (188)
84 KOG2535 RNA polymerase II elon 96.4 0.0083 1.8E-07 41.4 4.9 50 27-79 497-546 (554)
85 cd04265 DUF619-NAGS-U DUF619 d 96.3 0.0088 1.9E-07 33.9 3.9 48 16-69 33-80 (99)
86 PF00765 Autoind_synth: Autoin 96.3 0.058 1.3E-06 34.0 7.9 62 15-80 88-155 (182)
87 PRK13834 putative autoinducer 96.3 0.085 1.8E-06 33.9 8.6 61 15-79 97-164 (207)
88 PHA00771 head assembly protein 96.2 0.11 2.3E-06 30.8 8.1 84 17-103 62-145 (151)
89 PF05301 Mec-17: Touch recepto 95.6 0.17 3.7E-06 29.7 7.2 49 21-73 50-98 (120)
90 PF13480 Acetyltransf_6: Acety 95.5 0.17 3.6E-06 29.6 7.3 53 2-59 83-135 (142)
91 KOG2747 Histone acetyltransfer 95.4 0.013 2.7E-07 41.0 2.4 45 2-46 245-289 (396)
92 PLN03238 probable histone acet 95.2 0.051 1.1E-06 36.5 4.5 44 5-48 143-186 (290)
93 COG3375 Uncharacterized conser 95.2 0.16 3.5E-06 33.1 6.6 67 17-84 74-141 (266)
94 PLN03239 histone acetyltransfe 94.7 0.064 1.4E-06 37.0 4.2 44 5-48 201-244 (351)
95 COG2401 ABC-type ATPase fused 94.3 0.059 1.3E-06 38.5 3.3 62 17-79 241-307 (593)
96 PTZ00064 histone acetyltransfe 93.9 0.099 2.1E-06 37.8 3.8 43 5-47 372-414 (552)
97 KOG2036 Predicted P-loop ATPas 93.7 0.078 1.7E-06 40.0 3.2 31 17-47 614-644 (1011)
98 PF11090 DUF2833: Protein of u 93.7 0.36 7.7E-06 26.6 4.9 29 51-79 55-83 (86)
99 PLN00104 MYST -like histone ac 93.3 0.078 1.7E-06 37.8 2.6 43 5-47 294-336 (450)
100 TIGR03827 GNAT_ablB putative b 93.3 0.3 6.5E-06 32.4 5.2 48 33-84 21-68 (266)
101 KOG2696 Histone acetyltransfer 92.5 0.5 1.1E-05 33.0 5.4 48 16-65 216-263 (403)
102 PF02474 NodA: Nodulation prot 92.4 0.4 8.6E-06 30.1 4.4 54 16-74 84-137 (196)
103 PHA01733 hypothetical protein 92.0 0.28 6.1E-06 30.0 3.4 46 35-80 87-132 (153)
104 PHA00432 internal virion prote 92.0 0.43 9.4E-06 28.7 4.1 30 51-80 92-121 (137)
105 PF04768 DUF619: Protein of un 91.9 1.8 3.9E-05 27.0 7.0 68 3-76 73-142 (170)
106 PF01233 NMT: Myristoyl-CoA:pr 91.8 1.1 2.4E-05 27.7 5.9 51 1-52 90-144 (162)
107 PF04377 ATE_C: Arginine-tRNA- 91.7 0.95 2.1E-05 26.9 5.4 38 22-60 67-104 (128)
108 PRK14852 hypothetical protein; 91.4 1.1 2.5E-05 35.3 6.8 69 16-88 120-189 (989)
109 cd04266 DUF619-NAGS-FABP DUF61 90.1 1.2 2.6E-05 25.7 4.6 50 16-71 38-89 (108)
110 COG3916 LasI N-acyl-L-homoseri 89.6 4.1 8.8E-05 26.4 7.3 61 15-79 96-162 (209)
111 TIGR03019 pepcterm_femAB FemAB 89.5 2.1 4.5E-05 29.3 6.3 62 18-80 220-281 (330)
112 PRK01305 arginyl-tRNA-protein 89.4 3 6.4E-05 27.6 6.6 44 19-63 169-212 (240)
113 KOG3698 Hyaluronoglucosaminida 89.3 0.82 1.8E-05 34.0 4.3 57 27-84 826-882 (891)
114 COG5027 SAS2 Histone acetyltra 85.8 0.26 5.7E-06 34.1 0.2 40 4-43 249-288 (395)
115 PF13444 Acetyltransf_5: Acety 84.2 0.68 1.5E-05 26.1 1.4 24 16-39 77-100 (101)
116 PRK00756 acyltransferase NodA; 83.4 4 8.7E-05 25.6 4.5 53 16-73 84-136 (196)
117 COG2935 Putative arginyl-tRNA: 82.4 9.4 0.0002 25.4 6.2 52 19-77 176-227 (253)
118 KOG4601 Uncharacterized conser 80.3 8.9 0.00019 25.4 5.4 55 18-76 109-164 (264)
119 cd08353 Glo_EDI_BRP_like_7 Thi 80.2 2.6 5.7E-05 24.6 3.0 28 52-80 4-31 (142)
120 cd07235 MRD Mitomycin C resist 79.9 2.7 5.9E-05 23.8 2.9 19 61-79 9-27 (122)
121 cd08356 Glo_EDI_BRP_like_17 Th 79.0 2.2 4.9E-05 24.1 2.4 19 63-81 12-30 (113)
122 PHA02769 hypothetical protein; 78.3 4.5 9.8E-05 23.7 3.3 45 36-82 95-141 (154)
123 COG3473 Maleate cis-trans isom 77.7 12 0.00027 24.4 5.5 55 48-106 114-172 (238)
124 PF04958 AstA: Arginine N-succ 75.2 7.8 0.00017 27.1 4.4 69 11-79 115-187 (342)
125 cd09012 Glo_EDI_BRP_like_24 Th 72.2 7.8 0.00017 22.0 3.5 18 62-79 10-27 (124)
126 cd08350 BLMT_like BLMT, a bleo 71.6 4.6 0.0001 22.9 2.4 21 62-82 12-32 (120)
127 PRK04531 acetylglutamate kinas 71.2 8.8 0.00019 27.4 4.0 52 16-73 309-360 (398)
128 PF04816 DUF633: Family of unk 68.4 22 0.00047 22.9 5.1 49 33-81 74-123 (205)
129 COG3607 Predicted lactoylgluta 68.2 4.1 8.8E-05 24.3 1.6 18 63-80 14-31 (133)
130 PF12681 Glyoxalase_2: Glyoxal 66.4 9.8 0.00021 20.8 3.0 21 64-84 7-28 (108)
131 COG5630 ARG2 Acetylglutamate s 66.4 21 0.00045 25.6 4.9 58 3-65 386-444 (495)
132 COG2231 Uncharacterized protei 65.9 8.9 0.00019 24.9 2.9 40 32-79 121-160 (215)
133 cd03173 DUF619-like DUF619 dom 65.5 23 0.00049 20.1 6.4 46 16-67 32-77 (98)
134 KOG3014 Protein involved in es 65.4 26 0.00056 23.5 5.0 53 16-71 182-237 (257)
135 cd08342 HPPD_N_like N-terminal 64.2 15 0.00032 21.4 3.6 26 54-80 3-29 (136)
136 PF11124 Pho86: Inorganic phos 64.1 45 0.00098 23.0 8.2 79 2-80 181-271 (304)
137 PF12261 T_hemolysin: Thermost 63.9 35 0.00075 21.6 5.6 56 16-79 86-141 (179)
138 TIGR03243 arg_catab_AOST argin 63.3 11 0.00024 26.3 3.2 30 12-41 112-141 (335)
139 PF02100 ODC_AZ: Ornithine dec 62.2 28 0.00061 20.0 4.4 54 25-79 30-86 (108)
140 TIGR03245 arg_AOST_alph argini 62.1 12 0.00026 26.1 3.2 31 11-41 112-142 (336)
141 KOG2779 N-myristoyl transferas 61.4 20 0.00044 25.4 4.1 69 1-71 147-223 (421)
142 TIGR03244 arg_catab_AstA argin 61.3 12 0.00027 26.1 3.2 30 11-40 111-140 (336)
143 PRK10456 arginine succinyltran 61.1 12 0.00027 26.2 3.1 31 11-41 113-143 (344)
144 cd08358 Glo_EDI_BRP_like_21 Th 60.5 15 0.00032 21.7 3.0 18 62-79 12-30 (127)
145 cd07267 THT_Oxygenase_N N-term 59.9 10 0.00022 21.2 2.3 27 53-80 5-31 (113)
146 PF00903 Glyoxalase: Glyoxalas 59.4 14 0.0003 20.5 2.8 30 52-82 2-32 (128)
147 cd08344 MhqB_like_N N-terminal 58.9 14 0.00031 20.5 2.8 27 53-80 4-30 (112)
148 PF13380 CoA_binding_2: CoA bi 58.2 34 0.00074 19.7 5.2 44 36-80 65-108 (116)
149 COG1658 Small primase-like pro 55.5 12 0.00027 22.3 2.1 24 21-44 58-81 (127)
150 COG2898 Uncharacterized conser 55.0 84 0.0018 23.7 6.6 57 1-61 404-460 (538)
151 PTZ00129 40S ribosomal protein 54.2 49 0.0011 20.3 6.2 44 35-79 74-128 (149)
152 TIGR03645 glyox_marine lactoyl 52.7 22 0.00048 21.6 3.0 27 51-78 4-31 (162)
153 cd08346 PcpA_N_like N-terminal 52.5 26 0.00056 19.5 3.2 27 53-80 3-30 (126)
154 TIGR02990 ectoine_eutA ectoine 51.5 45 0.00097 22.1 4.4 35 46-80 114-151 (239)
155 cd07253 Glo_EDI_BRP_like_2 Thi 51.4 32 0.0007 19.0 3.5 29 52-81 4-33 (125)
156 PF12652 CotJB: CotJB protein; 51.3 9.6 0.00021 20.7 1.1 39 37-76 3-41 (78)
157 cd07238 Glo_EDI_BRP_like_5 Thi 51.1 16 0.00036 20.1 2.2 17 63-79 11-28 (112)
158 COG0346 GloA Lactoylglutathion 50.3 32 0.0007 18.8 3.4 29 53-82 4-33 (138)
159 PF01418 HTH_6: Helix-turn-hel 49.5 3.8 8.2E-05 21.8 -0.6 24 53-76 38-61 (77)
160 PF14696 Glyoxalase_5: Hydroxy 48.6 14 0.00031 22.3 1.7 30 51-81 9-38 (139)
161 PF03376 Adeno_E3B: Adenovirus 48.3 9.3 0.0002 19.9 0.7 13 26-38 53-65 (67)
162 COG0807 RibA GTP cyclohydrolas 47.4 75 0.0016 20.5 5.6 47 27-83 124-170 (193)
163 COG2384 Predicted SAM-dependen 46.7 72 0.0016 21.1 4.7 56 19-80 85-141 (226)
164 cd07265 2_3_CTD_N N-terminal d 46.6 32 0.0007 19.3 3.0 27 53-80 6-33 (122)
165 PRK10291 glyoxalase I; Provisi 46.4 21 0.00046 20.4 2.2 17 63-79 7-24 (129)
166 PF08901 DUF1847: Protein of u 46.3 35 0.00077 21.1 3.1 43 38-81 42-88 (157)
167 cd08349 BLMA_like Bleomycin bi 46.1 21 0.00046 19.4 2.1 20 62-81 8-28 (112)
168 PF00925 GTP_cyclohydro2: GTP 45.9 59 0.0013 20.2 4.2 31 49-81 137-167 (169)
169 COG2266 GTP:adenosylcobinamide 45.4 77 0.0017 20.1 4.5 43 35-79 26-68 (177)
170 COG3640 CooC CO dehydrogenase 45.4 77 0.0017 21.3 4.7 62 16-82 154-218 (255)
171 KOG4387 Ornithine decarboxylas 45.3 80 0.0017 20.2 5.1 61 20-80 102-165 (191)
172 PRK14831 undecaprenyl pyrophos 44.7 35 0.00077 22.8 3.2 34 27-61 41-74 (249)
173 PRK13886 conjugal transfer pro 43.7 72 0.0016 21.2 4.5 44 31-75 11-54 (241)
174 cd01027 TOPRIM_RNase_M5_like T 43.3 20 0.00044 19.4 1.6 25 19-43 46-70 (81)
175 cd08352 Glo_EDI_BRP_like_1 Thi 43.3 54 0.0012 18.0 3.6 28 51-79 3-31 (125)
176 cd08362 BphC5-RrK37_N_like N-t 43.0 44 0.00096 18.5 3.2 27 52-79 4-31 (120)
177 PF06564 YhjQ: YhjQ protein; 42.7 49 0.0011 22.1 3.6 45 28-75 8-52 (243)
178 cd07255 Glo_EDI_BRP_like_12 Th 42.6 43 0.00093 18.7 3.1 27 53-80 4-31 (125)
179 cd01274 AIDA-1b AIDA-1b Phosph 42.3 73 0.0016 18.9 4.3 43 18-61 7-49 (127)
180 cd07252 BphC1-RGP6_N_like N-te 41.5 41 0.00089 18.9 2.9 25 54-79 5-30 (120)
181 TIGR00068 glyox_I lactoylgluta 41.4 39 0.00083 20.0 2.8 28 51-79 17-45 (150)
182 PF04015 DUF362: Domain of unk 41.3 86 0.0019 19.8 4.5 46 34-80 20-67 (206)
183 cd08364 FosX FosX, a fosfomyci 41.3 55 0.0012 18.9 3.4 28 51-79 4-32 (131)
184 cd07256 HPCD_C_class_II C-term 41.2 42 0.00091 20.3 3.0 27 52-79 4-31 (161)
185 cd07241 Glo_EDI_BRP_like_3 Thi 41.0 45 0.00097 18.5 3.0 24 54-78 4-28 (125)
186 PRK10150 beta-D-glucuronidase; 40.9 1.2E+02 0.0026 22.9 5.7 64 18-82 292-357 (604)
187 PRK02983 lysS lysyl-tRNA synth 40.9 1.5E+02 0.0033 24.5 6.5 57 1-62 432-488 (1094)
188 cd07263 Glo_EDI_BRP_like_16 Th 40.8 29 0.00062 19.0 2.1 19 62-80 8-27 (119)
189 PRK11478 putative lyase; Provi 40.0 41 0.0009 18.9 2.7 27 52-79 7-34 (129)
190 cd08348 BphC2-C3-RGP6_C_like T 39.7 59 0.0013 18.5 3.4 18 63-80 12-30 (134)
191 TIGR00055 uppS undecaprenyl di 39.1 49 0.0011 21.8 3.1 35 27-62 20-54 (226)
192 PRK14837 undecaprenyl pyrophos 38.9 47 0.001 22.0 3.1 35 27-62 27-61 (230)
193 cd07266 HPCD_N_class_II N-term 38.6 50 0.0011 18.4 2.9 27 52-79 5-32 (121)
194 TIGR00505 ribA GTP cyclohydrol 38.3 1.1E+02 0.0023 19.5 4.7 45 27-81 122-166 (191)
195 cd07249 MMCE Methylmalonyl-CoA 37.5 54 0.0012 18.2 3.0 26 54-80 3-29 (128)
196 cd07240 ED_TypeI_classII_N N-t 37.4 36 0.00077 18.7 2.1 19 62-80 12-31 (117)
197 cd06587 Glo_EDI_BRP_like This 37.3 42 0.0009 17.7 2.4 21 61-81 7-28 (112)
198 cd08357 Glo_EDI_BRP_like_18 Th 37.2 40 0.00087 18.7 2.4 17 63-79 10-27 (125)
199 cd07262 Glo_EDI_BRP_like_19 Th 37.2 68 0.0015 17.9 3.3 20 61-80 9-32 (123)
200 COG3543 Uncharacterized conser 37.2 71 0.0015 19.2 3.3 37 27-63 14-50 (135)
201 cd07264 Glo_EDI_BRP_like_15 Th 37.0 50 0.0011 18.4 2.8 18 62-79 10-28 (125)
202 cd08347 PcpA_C_like C-terminal 36.8 60 0.0013 19.6 3.2 28 52-80 2-30 (157)
203 PF09288 UBA_3: Fungal ubiquit 35.9 19 0.00041 18.2 0.7 15 33-47 7-21 (55)
204 COG0826 Collagenase and relate 34.9 1.4E+02 0.003 21.1 5.0 26 54-79 117-142 (347)
205 PF01136 Peptidase_U32: Peptid 34.9 1.1E+02 0.0023 19.7 4.3 23 57-79 43-65 (233)
206 PRK14841 undecaprenyl pyrophos 34.8 62 0.0014 21.4 3.1 35 27-62 24-58 (233)
207 cd07242 Glo_EDI_BRP_like_6 Thi 34.8 80 0.0017 17.7 3.4 27 53-80 3-33 (128)
208 COG0022 AcoB Pyruvate/2-oxoglu 34.7 55 0.0012 22.8 2.9 33 21-53 254-286 (324)
209 PRK06724 hypothetical protein; 34.4 70 0.0015 18.6 3.1 27 51-78 7-37 (128)
210 PRK14842 undecaprenyl pyrophos 34.3 66 0.0014 21.4 3.2 35 27-62 29-63 (241)
211 PRK13913 3-methyladenine DNA g 34.0 60 0.0013 21.2 3.0 39 31-77 126-164 (218)
212 cd00475 CIS_IPPS Cis (Z)-Isopr 34.0 66 0.0014 21.1 3.1 35 27-62 21-55 (221)
213 cd08355 Glo_EDI_BRP_like_14 Th 34.0 45 0.00097 18.6 2.2 19 62-80 9-28 (122)
214 COG0623 FabI Enoyl-[acyl-carri 33.6 97 0.0021 20.8 3.8 38 26-63 152-189 (259)
215 COG3250 LacZ Beta-galactosidas 33.6 2.4E+02 0.0053 22.5 6.5 62 18-80 300-363 (808)
216 PRK00393 ribA GTP cyclohydrola 33.5 1.3E+02 0.0028 19.2 4.7 45 27-81 125-169 (197)
217 cd07237 BphC1-RGP6_C_like C-te 33.4 95 0.0021 18.5 3.7 29 50-79 8-37 (154)
218 PRK10240 undecaprenyl pyrophos 33.3 59 0.0013 21.5 2.8 35 27-62 14-48 (229)
219 PRK09319 bifunctional 3,4-dihy 33.2 2.2E+02 0.0048 21.7 6.1 33 48-82 347-379 (555)
220 PRK14829 undecaprenyl pyrophos 32.8 63 0.0014 21.5 2.9 33 27-60 35-67 (243)
221 PRK14833 undecaprenyl pyrophos 32.5 75 0.0016 21.0 3.2 35 27-62 25-59 (233)
222 PRK09607 rps11p 30S ribosomal 32.4 1.2E+02 0.0025 18.3 5.7 44 35-79 55-109 (132)
223 TIGR03628 arch_S11P archaeal r 32.3 1.1E+02 0.0024 17.9 5.8 44 35-79 48-102 (114)
224 cd09013 BphC-JF8_N_like N-term 32.2 78 0.0017 17.7 3.0 28 52-80 7-35 (121)
225 PRK04017 hypothetical protein; 31.7 52 0.0011 19.8 2.2 24 20-43 67-90 (132)
226 PF01255 Prenyltransf: Putativ 31.5 51 0.0011 21.5 2.3 34 27-61 15-48 (223)
227 cd08361 PpCmtC_N N-terminal do 31.5 45 0.00097 19.0 1.9 26 54-80 9-35 (124)
228 cd07243 2_3_CTD_C C-terminal d 31.4 84 0.0018 18.5 3.2 28 52-80 7-35 (143)
229 PRK14832 undecaprenyl pyrophos 31.2 66 0.0014 21.6 2.8 35 27-62 39-73 (253)
230 cd07246 Glo_EDI_BRP_like_8 Thi 31.2 51 0.0011 18.2 2.2 19 62-80 11-30 (122)
231 PRK14840 undecaprenyl pyrophos 31.0 72 0.0016 21.4 3.0 35 27-62 43-77 (250)
232 PRK14834 undecaprenyl pyrophos 30.8 84 0.0018 21.1 3.3 35 27-62 35-69 (249)
233 cd07254 Glo_EDI_BRP_like_20 Th 30.0 86 0.0019 17.4 3.0 17 64-80 13-30 (120)
234 TIGR01177 conserved hypothetic 29.9 1.8E+02 0.0039 20.0 4.9 63 19-82 248-315 (329)
235 COG5092 NMT1 N-myristoyl trans 29.9 1.3E+02 0.0028 21.3 4.0 32 16-47 164-195 (451)
236 cd08360 MhqB_like_C C-terminal 29.7 92 0.002 17.9 3.1 27 53-80 5-32 (134)
237 PTZ00349 dehydrodolichyl dipho 29.6 77 0.0017 22.2 3.0 35 27-62 40-74 (322)
238 PRK14839 undecaprenyl pyrophos 29.5 80 0.0017 21.1 3.0 35 27-62 30-64 (239)
239 KOG0524 Pyruvate dehydrogenase 29.4 80 0.0017 21.8 3.0 33 21-53 290-322 (359)
240 PF01751 Toprim: Toprim domain 29.3 87 0.0019 17.2 2.8 23 22-44 64-86 (100)
241 PF11633 SUD-M: Single-strande 29.1 1.4E+02 0.003 18.2 5.0 68 37-108 23-90 (142)
242 PF02836 Glyco_hydro_2_C: Glyc 28.4 1.9E+02 0.0041 19.5 8.3 65 17-82 14-80 (298)
243 PF15538 Toxin_61: Putative to 28.2 37 0.00081 21.0 1.2 37 56-92 18-54 (157)
244 cd09011 Glo_EDI_BRP_like_23 Th 27.9 64 0.0014 18.0 2.2 24 55-79 6-30 (120)
245 cd01212 JIP JNK-interacting pr 27.7 1.5E+02 0.0033 18.1 5.2 29 17-46 7-35 (148)
246 TIGR03371 cellulose_yhjQ cellu 27.5 1.7E+02 0.0037 18.7 4.3 36 31-66 10-45 (246)
247 cd08359 Glo_EDI_BRP_like_22 Th 27.5 64 0.0014 17.8 2.1 18 63-80 12-30 (119)
248 PRK11302 DNA-binding transcrip 27.5 27 0.00058 23.2 0.6 29 51-79 36-64 (284)
249 PRK14835 undecaprenyl pyrophos 27.5 77 0.0017 21.6 2.7 31 30-61 65-95 (275)
250 PRK14827 undecaprenyl pyrophos 27.2 84 0.0018 21.7 2.8 33 27-60 88-120 (296)
251 PRK12303 tumor necrosis factor 27.0 53 0.0012 19.7 1.7 37 50-86 122-158 (192)
252 KOG2015 NEDD8-activating compl 26.8 2.4E+02 0.0053 20.2 5.4 81 17-106 74-154 (422)
253 PF00411 Ribosomal_S11: Riboso 26.7 1.3E+02 0.0029 17.2 5.8 42 37-79 47-91 (110)
254 PF13433 Peripla_BP_5: Peripla 26.6 2.4E+02 0.0053 20.1 5.9 61 40-108 122-188 (363)
255 cd08343 ED_TypeI_classII_C C-t 26.3 1.2E+02 0.0027 17.2 3.2 17 63-79 10-27 (131)
256 PF00633 HHH: Helix-hairpin-he 26.2 55 0.0012 14.0 1.3 13 32-44 17-29 (30)
257 COG4904 Uncharacterized protei 26.0 55 0.0012 20.2 1.6 16 64-79 70-85 (174)
258 PF02374 ArsA_ATPase: Anion-tr 26.0 1.4E+02 0.0031 20.5 3.8 48 33-80 11-58 (305)
259 PF11324 DUF3126: Protein of u 25.8 24 0.00052 18.3 0.1 32 40-71 3-34 (63)
260 PLN02300 lactoylglutathione ly 25.8 71 0.0015 21.4 2.3 28 51-79 24-52 (286)
261 cd07244 FosA FosA, a Fosfomyci 25.5 1.3E+02 0.0029 16.7 3.7 26 53-79 3-29 (121)
262 PRK14830 undecaprenyl pyrophos 25.5 1.1E+02 0.0024 20.5 3.2 30 31-61 47-76 (251)
263 PRK14838 undecaprenyl pyrophos 25.5 1E+02 0.0022 20.6 3.0 35 27-62 31-65 (242)
264 PF01656 CbiA: CobQ/CobB/MinD/ 25.4 1.7E+02 0.0036 17.8 4.6 39 32-70 8-46 (195)
265 KOG1412 Aspartate aminotransfe 25.3 2.3E+02 0.005 20.2 4.6 29 59-87 131-159 (410)
266 PRK09318 bifunctional 3,4-dihy 25.2 2.7E+02 0.0058 20.1 6.2 46 27-82 311-356 (387)
267 PRK15482 transcriptional regul 24.8 24 0.00051 23.6 -0.1 22 58-79 43-64 (285)
268 PRK14828 undecaprenyl pyrophos 24.7 1.1E+02 0.0023 20.6 3.0 30 30-60 51-80 (256)
269 PRK02983 lysS lysyl-tRNA synth 24.4 3.4E+02 0.0073 22.6 6.0 67 36-106 298-364 (1094)
270 PRK11337 DNA-binding transcrip 24.1 26 0.00056 23.5 -0.0 29 51-79 48-76 (292)
271 cd01214 CG8312 CG8312 Phosphot 23.7 1.8E+02 0.0039 17.6 4.5 46 16-62 5-51 (133)
272 PRK14019 bifunctional 3,4-dihy 23.2 1.9E+02 0.004 20.7 4.0 43 27-80 319-361 (367)
273 COG0271 BolA Stress-induced mo 23.1 1.5E+02 0.0033 16.5 5.4 46 16-62 37-84 (90)
274 cd09014 BphC-JF8_C_like C-term 22.7 1.4E+02 0.003 18.2 3.1 27 52-79 7-34 (166)
275 PF00376 MerR: MerR family reg 22.5 95 0.0021 14.0 1.8 14 63-76 12-25 (38)
276 PRK11892 pyruvate dehydrogenas 22.5 2.4E+02 0.0052 20.8 4.6 54 22-75 395-448 (464)
277 KOG1637 Threonyl-tRNA syntheta 21.9 97 0.0021 23.1 2.5 39 35-74 191-229 (560)
278 TIGR00344 alaS alanine--tRNA l 21.4 2.7E+02 0.0059 22.4 4.9 43 37-79 96-140 (851)
279 PLN02367 lactoylglutathione ly 21.3 96 0.0021 20.6 2.2 26 54-80 78-104 (233)
280 PHA02518 ParA-like protein; Pr 21.0 2.2E+02 0.0048 17.6 4.0 37 31-67 9-45 (211)
281 PF12953 DUF3842: Domain of un 21.0 2.1E+02 0.0045 17.3 4.1 48 27-79 5-52 (131)
282 PRK15447 putative protease; Pr 20.8 1E+02 0.0022 21.0 2.4 23 57-79 114-136 (301)
283 cd08363 FosB FosB, a fosfomyci 20.8 1.7E+02 0.0036 16.8 3.0 18 62-79 10-28 (131)
284 PLN02683 pyruvate dehydrogenas 20.8 2.4E+02 0.0052 19.9 4.2 26 22-47 283-308 (356)
285 cd08345 Fosfomycin_RP Fosfomyc 20.8 1E+02 0.0022 16.7 2.1 19 62-80 8-27 (113)
286 cd08351 ChaP_like ChaP, an enz 20.6 1.6E+02 0.0035 16.4 2.9 26 53-79 6-32 (123)
287 cd06588 PhnB_like Escherichia 20.5 1.8E+02 0.004 16.5 3.2 24 57-80 5-29 (128)
288 CHL00041 rps11 ribosomal prote 20.5 1.9E+02 0.0042 16.8 6.0 44 35-79 58-104 (116)
289 PRK04101 fosfomycin resistance 20.4 1.7E+02 0.0036 17.0 3.0 27 52-79 5-32 (139)
290 PLN02831 Bifunctional GTP cycl 20.4 3.7E+02 0.0079 19.9 6.3 46 27-82 364-409 (450)
291 PRK11557 putative DNA-binding 20.3 33 0.00072 22.8 -0.1 28 52-79 33-60 (278)
292 cd04263 DUF619-NAGK-FABP DUF61 20.2 1.9E+02 0.004 16.4 6.4 44 16-65 32-75 (98)
293 cd04777 HTH_MerR-like_sg1 Heli 20.1 88 0.0019 17.6 1.7 16 63-78 13-28 (107)
No 1
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=99.76 E-value=1.5e-17 Score=99.85 Aligned_cols=86 Identities=19% Similarity=0.222 Sum_probs=72.8
Q ss_pred eEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeeccc
Q 033762 2 VGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYS 81 (112)
Q Consensus 2 vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~~ 81 (112)
||.+......+.....++|.+++|+++|||+|||++|++.+++.+. ..|+..+.+++...|++|.++|+++||++.++.
T Consensus 69 VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~-~~g~~eVvLeTe~~n~~A~~LY~sLGF~r~~r~ 147 (165)
T KOG3139|consen 69 VGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMR-SRGYSEVVLETEVTNLSALRLYESLGFKRDKRL 147 (165)
T ss_pred EEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHHHHHHHH-HCCCcEEEEeccccchHHHHHHHhcCceEecce
Confidence 5666555444433467999999999999999999999999999997 679999999999999999999999999999876
Q ss_pred cceeccc
Q 033762 82 EIFKEVT 88 (112)
Q Consensus 82 ~~~~~~~ 88 (112)
..|...+
T Consensus 148 ~~YYlng 154 (165)
T KOG3139|consen 148 FRYYLNG 154 (165)
T ss_pred eEEEECC
Confidence 6554433
No 2
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=99.76 E-value=2.6e-17 Score=90.32 Aligned_cols=75 Identities=24% Similarity=0.357 Sum_probs=68.2
Q ss_pred CeEEEEEEeecCCC--CCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCe
Q 033762 1 MVGDVNIYMNDLDN--LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 76 (112)
Q Consensus 1 ~vG~~~~~~~~~~~--~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~ 76 (112)
+||++.+....... ...+++..++|+|+|||+|+|+.|++.++++++ ..+.+.+.+.+.+.|..+++||+|+||+
T Consensus 7 ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~-~~g~~~i~~~~~~~n~~~~~~~~k~Gf~ 83 (83)
T PF00583_consen 7 IVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWAR-KRGIKRIYLDVSPDNPAARRFYEKLGFE 83 (83)
T ss_dssp EEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHH-HTTESEEEEEEETTGHHHHHHHHHTTEE
T ss_pred EEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHH-hcCccEEEEEEeCCCHHHHHHHHHcCCC
Confidence 58889888766542 478999999999999999999999999999998 4799999999999999999999999996
No 3
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=99.76 E-value=1.1e-17 Score=102.48 Aligned_cols=105 Identities=23% Similarity=0.185 Sum_probs=79.4
Q ss_pred CeEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
+||++.+...... .....+..++|+|++||+|+|++|++.++++++ ..+..++.+.+.+.|++|++||+|+||+....
T Consensus 51 ivG~~~~~~~~~~-~~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~-~~~~~~i~~~v~~~N~~a~~ly~k~G~~~~~~ 128 (157)
T TIGR02406 51 IVGFVSGYLRPDR-PDVLFVWQVAVDPRARGKGLARRLLEALLERVA-CERVRHLETTITPDNQASRALFKALARRRGVH 128 (157)
T ss_pred EEEEEEEEecCCC-CCeEEEEEEEEChHhccCcHHHHHHHHHHHHHH-hCCCCEEEEEEcCCCHHHHHHHHHhCcccCCC
Confidence 4787765433322 256788899999999999999999999999987 56889999999999999999999999998663
Q ss_pred ccceeccceeeecchhhHHHHHHHhhc
Q 033762 81 SEIFKEVTLELPVENAKREELLVLTAN 107 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (112)
...-..........|.+.++|+.++..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (157)
T TIGR02406 129 LIEEPFFDGELFPGGAHDDEWLLRIGP 155 (157)
T ss_pred eEeecccccccCccCCCChhHeeeccc
Confidence 211111111233467778888877653
No 4
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=99.73 E-value=6.9e-17 Score=100.50 Aligned_cols=80 Identities=16% Similarity=0.188 Sum_probs=71.4
Q ss_pred CeEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
+||++++...++.. ..+++++++ +|+|||+|+|+++++.+++++++..+++++.+.+.+.|.+|+++++|+||+.+|.
T Consensus 78 ~iG~~~l~~~~~~~-~~~~ig~~i-~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~ek~Gf~~~g~ 155 (179)
T PRK10151 78 LIGVLSFNRIEPLN-KTAYIGYWL-DESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVALRNGFTLEGC 155 (179)
T ss_pred EEEEEEEEeeccCC-CceEEEEEE-ChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHHHCCCEEEeE
Confidence 48999988776554 578999876 7999999999999999999999778999999999999999999999999999985
Q ss_pred cc
Q 033762 81 SE 82 (112)
Q Consensus 81 ~~ 82 (112)
..
T Consensus 156 ~~ 157 (179)
T PRK10151 156 LK 157 (179)
T ss_pred ec
Confidence 43
No 5
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=99.73 E-value=5.1e-17 Score=102.31 Aligned_cols=81 Identities=22% Similarity=0.289 Sum_probs=71.2
Q ss_pred CeEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
+||.+++...+......+++++++ +|+|||+|+|+++++.+++++++.++++++.+.+.+.|.+|+++|+|+||+.++.
T Consensus 88 ~iG~i~l~~~~~~~~~~~eig~~i-~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l~ek~Gf~~~g~ 166 (194)
T PRK10809 88 IIGVANFSNVVRGSFHACYLGYSL-GQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDLLARLGFEKEGY 166 (194)
T ss_pred EEEEEEEEeecCCCeeeEEEEEEE-CHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHHHHHCCCcEEee
Confidence 489999887654333568899887 6999999999999999999999778999999999999999999999999999885
Q ss_pred cc
Q 033762 81 SE 82 (112)
Q Consensus 81 ~~ 82 (112)
..
T Consensus 167 ~~ 168 (194)
T PRK10809 167 AK 168 (194)
T ss_pred ec
Confidence 44
No 6
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=99.73 E-value=6.2e-17 Score=101.89 Aligned_cols=76 Identities=18% Similarity=0.247 Sum_probs=67.8
Q ss_pred CeEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
+||++.+...+. ..++++.++++|++||+|+|+++++.++++++ +.|++++.+.+.+.|.+|++||+|+||+.+++
T Consensus 110 iiG~i~l~~~~~---~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~-~~g~~~I~l~v~~~N~~A~~~Y~klGF~~~~~ 185 (191)
T TIGR02382 110 PRGYVTLRELND---TDARIGLLAVFPGAQSRGIGAELMQTALNWCY-ARGLTRLRVATQMGNTAALRLYIRSGANIEST 185 (191)
T ss_pred EEEEEEEEecCC---CceEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HcCCCEEEEEeCCCCHHHHHHHHHcCCccccc
Confidence 478888765543 34789999999999999999999999999997 68999999999999999999999999998874
No 7
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=99.69 E-value=5.5e-16 Score=94.59 Aligned_cols=81 Identities=15% Similarity=0.296 Sum_probs=67.2
Q ss_pred CeEEEEEEeecCC-CCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeec
Q 033762 1 MVGDVNIYMNDLD-NLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (112)
Q Consensus 1 ~vG~~~~~~~~~~-~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~ 79 (112)
+||++++...... ....++++ ++++|+|||+|+|+++++.+++++++..+.+.+.+.+.+.|++|++||+++||+..+
T Consensus 62 ~vG~~~~~~~~~~~~~~~~~~~-~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~~y~k~GF~~~g 140 (162)
T PRK10140 62 VVGHLTIDVQQRPRRSHVADFG-ICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIKVYKKYGFEIEG 140 (162)
T ss_pred EEEEEEEecccccccceEEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHHHHHHCCCEEEe
Confidence 4788888754322 22456666 555799999999999999999999865799999999999999999999999999998
Q ss_pred ccc
Q 033762 80 YSE 82 (112)
Q Consensus 80 ~~~ 82 (112)
...
T Consensus 141 ~~~ 143 (162)
T PRK10140 141 TGK 143 (162)
T ss_pred ecc
Confidence 644
No 8
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=99.68 E-value=6.6e-16 Score=93.80 Aligned_cols=81 Identities=30% Similarity=0.506 Sum_probs=69.9
Q ss_pred CeEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
+||.+.+...++.. ..++++.++. |++|++|+|+.++..++++|++..|++++.+.+.+.|+.|++||+++||+.++.
T Consensus 62 iiG~~~~~~~~~~~-~~~~~~~~v~-~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~~~GF~~~g~ 139 (155)
T PF13420_consen 62 IIGYVSLRDIDPYN-HTAELSIYVS-PDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYKKLGFEEEGE 139 (155)
T ss_dssp EEEEEEEEESSSGT-TEEEEEEEEE-GGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHHHTTEEEEEE
T ss_pred EEEEEEEEeeeccC-CEEEEeeEEC-hhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHHhCCCEEEEE
Confidence 58999998777744 7899997776 999999999999999999997789999999999999999999999999999996
Q ss_pred ccc
Q 033762 81 SEI 83 (112)
Q Consensus 81 ~~~ 83 (112)
.+.
T Consensus 140 ~~~ 142 (155)
T PF13420_consen 140 LKD 142 (155)
T ss_dssp EEE
T ss_pred Eec
Confidence 543
No 9
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=99.68 E-value=1e-15 Score=91.50 Aligned_cols=74 Identities=38% Similarity=0.664 Sum_probs=64.8
Q ss_pred CeEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCe
Q 033762 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 76 (112)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~ 76 (112)
+||.+++...+... ..+++++++. |++||+|+|++++..+++++++.++++++.+.+.+.|.+|+++++|+||+
T Consensus 69 ~iG~i~~~~~~~~~-~~~eig~~i~-~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~~~~~k~GF~ 142 (142)
T PF13302_consen 69 IIGFIGLYNIDKNN-NWAEIGYWIG-PDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASRRLLEKLGFE 142 (142)
T ss_dssp EEEEEEEEEEETTT-TEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHHHHHHHTT-E
T ss_pred eEEEeeeeecccCC-Cccccccchh-HHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHHHHHHHcCCC
Confidence 48999996654433 7899998875 89999999999999999999889999999999999999999999999996
No 10
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=4.3e-16 Score=96.51 Aligned_cols=82 Identities=32% Similarity=0.535 Sum_probs=73.2
Q ss_pred CeEEEEEEeecC-CCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeec
Q 033762 1 MVGDVNIYMNDL-DNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (112)
Q Consensus 1 ~vG~~~~~~~~~-~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~ 79 (112)
+||.+++...+. .....++++++. +|+++|+|+|++++..+++++++..+++++.+.+.+.|.+|+++++|+||+.++
T Consensus 79 ~iG~~~~~~~~~~~~~~~~~ig~~l-~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~~S~rv~ek~Gf~~eg 157 (187)
T COG1670 79 LIGVIGLSDIDRAANGDLAEIGYWL-DPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENEASIRVYEKLGFRLEG 157 (187)
T ss_pred EEEEEEEEEeccccccceEEEEEEE-ChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCHHHHHHHHHcCChhhh
Confidence 489999987763 333789999999 599999999999999999999988999999999999999999999999999999
Q ss_pred cccc
Q 033762 80 YSEI 83 (112)
Q Consensus 80 ~~~~ 83 (112)
....
T Consensus 158 ~~~~ 161 (187)
T COG1670 158 ELRQ 161 (187)
T ss_pred hhhh
Confidence 6443
No 11
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=99.67 E-value=9.9e-16 Score=96.57 Aligned_cols=76 Identities=20% Similarity=0.260 Sum_probs=67.0
Q ss_pred CeEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
+||++.+..... ..++++.++|+|+|||+|+|++|++.++++++ +.|++++.+.+.+.|.+|++||+|+||+.++.
T Consensus 113 ~vG~~~l~~~~~---~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~-~~g~~~i~l~v~~~N~~a~~~yek~Gf~~~~~ 188 (194)
T PRK10975 113 IQGFVTLRELND---TDARIGLLAVFPGAQGRGIGARLMQAALNWCQ-ARGLTRLRVATQMGNLAALRLYIRSGANIEST 188 (194)
T ss_pred EEEEEEEEecCC---CceEEEEEEEChhhcCCCHHHHHHHHHHHHHH-HcCCCEEEEEeCCCcHHHHHHHHHCCCeEeEE
Confidence 478887765432 34789999899999999999999999999997 67999999999999999999999999999884
No 12
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=99.67 E-value=3.6e-16 Score=93.86 Aligned_cols=78 Identities=14% Similarity=0.210 Sum_probs=65.8
Q ss_pred CeEEEEEEeecCC--CCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeee
Q 033762 1 MVGDVNIYMNDLD--NLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDI 78 (112)
Q Consensus 1 ~vG~~~~~~~~~~--~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~ 78 (112)
+||++.+...... ....++|..++|+|++||+|+|+.|++.+++++. ..+++.+.+.+...|..|++||+++||+..
T Consensus 58 ivG~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~-~~~~~~i~l~~~~~n~~a~~fY~~~Gf~~~ 136 (144)
T PRK10146 58 VVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEAR-QAGAEMTELSTNVKRHDAHRFYLREGYEQS 136 (144)
T ss_pred EEEEEEEEecccccccchhheeheeEECHHHcCCCHHHHHHHHHHHHHH-HcCCcEEEEecCCCchHHHHHHHHcCCchh
Confidence 4788887653221 1124678889999999999999999999999997 669999999999999999999999999877
Q ss_pred c
Q 033762 79 S 79 (112)
Q Consensus 79 ~ 79 (112)
+
T Consensus 137 ~ 137 (144)
T PRK10146 137 H 137 (144)
T ss_pred h
Confidence 5
No 13
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=99.67 E-value=1.2e-15 Score=95.43 Aligned_cols=79 Identities=25% Similarity=0.382 Sum_probs=68.8
Q ss_pred CeEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
+||++++...+... ..++++++ ++|+|||+|+|+++++.+++++++.++.+++.+.+...|.+|++||+|+||+.++.
T Consensus 68 ~iG~~~~~~~~~~~-~~~~~~~~-v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~yek~GF~~~~~ 145 (186)
T PRK15130 68 KAGLVELVEINHVH-RRAEFQII-ISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGFEVEGE 145 (186)
T ss_pred EEEEEEEEeecCCC-CeEEEEEE-ECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHHHCCCEEEEE
Confidence 47999887765443 46778754 47999999999999999999999888999999999999999999999999999885
Q ss_pred c
Q 033762 81 S 81 (112)
Q Consensus 81 ~ 81 (112)
.
T Consensus 146 ~ 146 (186)
T PRK15130 146 L 146 (186)
T ss_pred E
Confidence 4
No 14
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=99.66 E-value=1.2e-15 Score=89.76 Aligned_cols=79 Identities=22% Similarity=0.370 Sum_probs=67.4
Q ss_pred CeEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
+||++.+.... ....+..++|+|++||+|+|++|++.++++++ ..+.+.+.+.+.+.|..|++||+++||+.++.
T Consensus 42 ~vg~~~~~~~~----~~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~-~~~~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~ 116 (131)
T TIGR01575 42 VVGYAGVQIVL----DEAHILNIAVKPEYQGQGIGRALLRELIDEAK-GRGVNEIFLEVRVSNIAAQALYKKLGFNEIAI 116 (131)
T ss_pred EEEEEEEEecC----CCeEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HcCCCeEEEEEecccHHHHHHHHHcCCCcccc
Confidence 46777765433 34578888999999999999999999999998 56899999999999999999999999999986
Q ss_pred ccce
Q 033762 81 SEIF 84 (112)
Q Consensus 81 ~~~~ 84 (112)
...+
T Consensus 117 ~~~~ 120 (131)
T TIGR01575 117 RRNY 120 (131)
T ss_pred cccc
Confidence 5543
No 15
>PRK03624 putative acetyltransferase; Provisional
Probab=99.65 E-value=1.1e-15 Score=90.84 Aligned_cols=75 Identities=21% Similarity=0.329 Sum_probs=64.0
Q ss_pred CeEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
+||++.+.... ....+..++++|+|||+|+|+++++.++++++ ..+++.+.+.+.+.|+.|+++|+|+||+..+.
T Consensus 56 ~vG~~~~~~~~----~~~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~-~~~~~~~~~~~~~~N~~~~~~y~k~GF~~~~~ 130 (140)
T PRK03624 56 VVGTVMGGYDG----HRGWAYYLAVHPDFRGRGIGRALVARLEKKLI-ARGCPKINLQVREDNDAVLGFYEALGYEEQDR 130 (140)
T ss_pred EEEEEEeeccC----CCceEEEEEECHHHhCCCHHHHHHHHHHHHHH-HCCCCEEEEEEecCcHHHHHHHHHcCCccccE
Confidence 47877654322 33567788899999999999999999999987 57999999999999999999999999998763
No 16
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=99.64 E-value=2.3e-15 Score=91.45 Aligned_cols=80 Identities=25% Similarity=0.353 Sum_probs=69.0
Q ss_pred CeEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
+||++++...+... ..++++++ ++|++| +|+|++++..++++++++++++.+.+.+.+.|.+|++||+|+||+.++.
T Consensus 62 ~vG~~~~~~~~~~~-~~~~~g~~-~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~k~Gf~~~g~ 138 (156)
T TIGR03585 62 PIGVISFTDINLVH-KSAFWGIY-ANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYEKFGFEREGV 138 (156)
T ss_pred EEEEEEEEecChhh-CeEEEEEE-eChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHHHcCCeEeee
Confidence 47888887665433 56788877 679999 9999999999999999778999999999999999999999999999995
Q ss_pred ccc
Q 033762 81 SEI 83 (112)
Q Consensus 81 ~~~ 83 (112)
...
T Consensus 139 ~~~ 141 (156)
T TIGR03585 139 FRQ 141 (156)
T ss_pred ehh
Confidence 543
No 17
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=99.64 E-value=3.9e-15 Score=89.80 Aligned_cols=77 Identities=17% Similarity=0.293 Sum_probs=65.2
Q ss_pred CeEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
+||++.+.... +.+.+..++++|++||+|+|+++++.+++.+. ..+++.+.+.+.+.|.+|.+||+|+||+..+.
T Consensus 51 ~vG~~~~~~~~----~~~~~~~i~v~~~~rg~G~g~~ll~~~~~~~~-~~~~~~~~~~~~~~N~~a~~~y~k~Gf~~~~~ 125 (146)
T PRK09491 51 MAAFAITQVVL----DEATLFNIAVDPDYQRQGLGRALLEHLIDELE-KRGVATLWLEVRASNAAAIALYESLGFNEVTI 125 (146)
T ss_pred EEEEEEEEeec----CceEEEEEEECHHHccCCHHHHHHHHHHHHHH-HCCCcEEEEEEccCCHHHHHHHHHcCCEEeee
Confidence 46777665433 23567778899999999999999999999986 67999999999999999999999999998875
Q ss_pred cc
Q 033762 81 SE 82 (112)
Q Consensus 81 ~~ 82 (112)
..
T Consensus 126 ~~ 127 (146)
T PRK09491 126 RR 127 (146)
T ss_pred ee
Confidence 43
No 18
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=99.63 E-value=4.3e-15 Score=91.90 Aligned_cols=84 Identities=21% Similarity=0.330 Sum_probs=67.4
Q ss_pred eEEEEEEeecCCC--CCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCc-cEEEEEeCCccHHHHHHHHhCCCeee
Q 033762 2 VGDVNIYMNDLDN--LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGI-HVFRAKIGESNGASLRLFQKLGFEDI 78 (112)
Q Consensus 2 vG~~~~~~~~~~~--~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~-~~l~~~~~~~n~~s~~~y~~~Gf~~~ 78 (112)
+|++......... ...++|..++|+|+|||+|+|++|++.+++.+. ..+. ..+.+.|.++|.+|+.||+++||+..
T Consensus 74 ~G~~~~~~~~~~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~-~~~~~~~~~L~V~~~N~~Ai~lY~~~GF~~~ 152 (177)
T COG0456 74 VGFLLVRVVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLR-ERGLADKIVLEVRESNEAAIGLYRKLGFEVV 152 (177)
T ss_pred eEEEEEEEecCCccccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHH-hcCCCceEEEEEecCChHHHHHHHHcCCEEE
Confidence 5666554222211 126899999999999999999999999999987 4465 89999999999999999999999999
Q ss_pred ccccceec
Q 033762 79 SYSEIFKE 86 (112)
Q Consensus 79 ~~~~~~~~ 86 (112)
+....|..
T Consensus 153 ~~~~~yy~ 160 (177)
T COG0456 153 KIRKNYYA 160 (177)
T ss_pred eeehhhcc
Confidence 86654433
No 19
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=99.62 E-value=1e-14 Score=88.52 Aligned_cols=81 Identities=27% Similarity=0.480 Sum_probs=65.4
Q ss_pred eEEEEEEeecCC---CCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeee
Q 033762 2 VGDVNIYMNDLD---NLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDI 78 (112)
Q Consensus 2 vG~~~~~~~~~~---~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~ 78 (112)
+|++.+...... .+....++.++++|++||+|+|+.+++.++++++++.++.++.+.+.+.|.+|+++|+|+||+.+
T Consensus 60 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~~~~~~~~k~GF~~~ 139 (152)
T PF13523_consen 60 IGYFEIYWPDEDYDADDGDRGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNTRAIRLYEKAGFRKV 139 (152)
T ss_dssp EEEEEEEEGGGSS---TTEEEEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-HHHHHHHHHTT-EEE
T ss_pred EEEEEEecccccccCCCCEEEEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCHHHHHHHHHcCCEEe
Confidence 677766543222 23567899999999999999999999999999997668999999999999999999999999999
Q ss_pred cccc
Q 033762 79 SYSE 82 (112)
Q Consensus 79 ~~~~ 82 (112)
++..
T Consensus 140 g~~~ 143 (152)
T PF13523_consen 140 GEFE 143 (152)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 9764
No 20
>PTZ00330 acetyltransferase; Provisional
Probab=99.59 E-value=2.9e-14 Score=85.83 Aligned_cols=75 Identities=19% Similarity=0.372 Sum_probs=60.6
Q ss_pred CeEEEEEEeecC---CCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCee
Q 033762 1 MVGDVNIYMNDL---DNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 77 (112)
Q Consensus 1 ~vG~~~~~~~~~---~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~ 77 (112)
+||++.+..... .....+++..++|+|+|||+|+|++|++.++++++ ..++..+.+.+ |.+|++||+++||+.
T Consensus 63 ~vG~~~~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~-~~~~~~l~l~~---n~~a~~~y~k~GF~~ 138 (147)
T PTZ00330 63 IVGTASLFVEPKFTRGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIAR-SSGCYKVILDC---TEDMVAFYKKLGFRA 138 (147)
T ss_pred EEEEEEEEeccccccCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HCCCCEEEEec---ChHHHHHHHHCCCEE
Confidence 478887764322 11135789999999999999999999999999997 56888886654 889999999999998
Q ss_pred ec
Q 033762 78 IS 79 (112)
Q Consensus 78 ~~ 79 (112)
..
T Consensus 139 ~~ 140 (147)
T PTZ00330 139 CE 140 (147)
T ss_pred ec
Confidence 76
No 21
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=99.58 E-value=3.4e-14 Score=86.01 Aligned_cols=76 Identities=17% Similarity=0.316 Sum_probs=61.6
Q ss_pred CeEEEEEEeec---CCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCee
Q 033762 1 MVGDVNIYMND---LDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 77 (112)
Q Consensus 1 ~vG~~~~~~~~---~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~ 77 (112)
+||++.+.... ......+++..++|+|+|||+|+|++|++.++++|+ ..|++++.+.+.+.|. .||+|+||+.
T Consensus 66 ivG~~~~~~~~~~~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~-~~g~~~i~l~~~~~N~---~~y~k~GF~~ 141 (150)
T PLN02706 66 IIATGSVFVERKFIRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHAR-SAGCYKVILDCSEENK---AFYEKCGYVR 141 (150)
T ss_pred EEEEEEEEEEeecccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HcCCCEEEEEeccccH---HHHHHCcCEE
Confidence 46777664221 111245677789999999999999999999999998 6799999999999996 5999999998
Q ss_pred ecc
Q 033762 78 ISY 80 (112)
Q Consensus 78 ~~~ 80 (112)
++.
T Consensus 142 ~g~ 144 (150)
T PLN02706 142 KEI 144 (150)
T ss_pred ehh
Confidence 873
No 22
>PRK10314 putative acyltransferase; Provisional
Probab=99.58 E-value=2.6e-14 Score=87.19 Aligned_cols=76 Identities=14% Similarity=0.182 Sum_probs=61.1
Q ss_pred CeEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
+||++.+...+... ..++|+.++|+|+|||+|+|++|++.+++++.+..+...+.+.+ +..+..||+|+||+.++.
T Consensus 59 ~vg~~r~~~~~~~~-~~~~i~rv~V~~~~rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a---~~~a~~fY~k~GF~~~g~ 134 (153)
T PRK10314 59 LVAYARILKSDDDL-EPVVIGRVIVSEALRGEKVGQQLMSKTLESCTRHWPDKPVYLGA---QAHLQNFYQSFGFIPVTE 134 (153)
T ss_pred EEEEEEEecCCCCC-CCEEEEEEEECHHHhCCCHHHHHHHHHHHHHHHHCCCCcEEEeh---HHHHHHHHHHCCCEECCC
Confidence 46777776543222 35799999999999999999999999999987555677776654 567889999999999885
No 23
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=99.57 E-value=1.9e-14 Score=94.81 Aligned_cols=79 Identities=25% Similarity=0.196 Sum_probs=67.8
Q ss_pred CeEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
+||++.+.. +... ..++|..++|+|+|||+|+|++|++.++++++ ..|++.+.+.+...|.+|+++|+|+||+..|.
T Consensus 169 iVG~~~~~~-~~~~-~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~-~~g~~~l~~~~~~~n~~a~~ly~k~GF~~~G~ 245 (266)
T TIGR03827 169 IIALASAEM-DPEN-GNAEMTDFATLPEYRGKGLAKILLAAMEKEMK-EKGIRTAYTIARASSYGMNITFARLGYAYGGT 245 (266)
T ss_pred EEEEEEEec-CCCC-CcEEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HCCCcEEEeehhhcchhHHHHHHHcCCccccE
Confidence 477776532 2222 56899999999999999999999999999997 67999999999999999999999999999995
Q ss_pred cc
Q 033762 81 SE 82 (112)
Q Consensus 81 ~~ 82 (112)
..
T Consensus 246 l~ 247 (266)
T TIGR03827 246 LV 247 (266)
T ss_pred Ee
Confidence 43
No 24
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.57 E-value=4.4e-14 Score=93.88 Aligned_cols=79 Identities=23% Similarity=0.357 Sum_probs=64.3
Q ss_pred CeEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
+||++.+.... ......++..+.|+|+|||+|+|+.|++.++++++ ..|...+.+.+.+.|..|++||+|+||+..+.
T Consensus 211 ~vG~~~~~~~~-~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~-~~g~~~v~l~v~~~N~~a~~~y~k~GF~~~~~ 288 (292)
T TIGR03448 211 LLGFHWTKVHP-DEPALGEVYVVGVDPAAQGRGLGDALTLIGLHHLA-ARGLPAVMLYVEADNEAAVRTYEKLGFTVAEV 288 (292)
T ss_pred EEEEEEEEecC-CCCceeEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HCCCCEEEEEEeCCCHHHHHHHHHcCCEEccc
Confidence 36665433222 22245678878899999999999999999999998 56999999999999999999999999998764
Q ss_pred c
Q 033762 81 S 81 (112)
Q Consensus 81 ~ 81 (112)
.
T Consensus 289 ~ 289 (292)
T TIGR03448 289 D 289 (292)
T ss_pred c
Confidence 3
No 25
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.54 E-value=1.6e-13 Score=74.82 Aligned_cols=66 Identities=26% Similarity=0.524 Sum_probs=52.9
Q ss_pred CeEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCee
Q 033762 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 77 (112)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~ 77 (112)
+||++.+...+ +...|..++|+|++||+|+|++|++.+.+.+. ...+.+.+ |+.+..||+++||+.
T Consensus 14 ivG~~~~~~~~----~~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~----~~~i~l~~---~~~~~~fY~~~GF~~ 79 (79)
T PF13508_consen 14 IVGFIRLWPNE----DFAYIGYLAVDPEYRGKGIGSKLLNYLLEKAK----SKKIFLFT---NPAAIKFYEKLGFEE 79 (79)
T ss_dssp EEEEEEEEETT----TEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHT----CSEEEEEE---EHHHHHHHHHTTEEE
T ss_pred EEEEEEEEEcC----CEEEEEEEEECHHHcCCCHHHHHHHHHHHHcC----CCcEEEEE---cHHHHHHHHHCcCCC
Confidence 47888775444 57899999999999999999999999988763 34565554 678999999999974
No 26
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=99.51 E-value=4.2e-13 Score=74.45 Aligned_cols=60 Identities=30% Similarity=0.435 Sum_probs=51.0
Q ss_pred EEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeec
Q 033762 18 AEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (112)
Q Consensus 18 ~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~ 79 (112)
++|+.+.++|++||+|+|+.++..+.+.+.+ .|.. ..+.+..+|.+|+++|+|+||+...
T Consensus 22 g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~-~g~~-~~l~v~~~N~~s~~ly~klGf~~~~ 81 (86)
T PF08445_consen 22 GEIGGVYTLPEHRRRGLGSALVAALARELLE-RGKT-PFLYVDADNEASIRLYEKLGFREIE 81 (86)
T ss_dssp CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHH-TTSE-EEEEEETT-HHHHHHHHHCT-EEEE
T ss_pred cEEEEEEECHHHcCCCHHHHHHHHHHHHHHh-CCCc-EEEEEECCCHHHHHHHHHcCCEEEE
Confidence 6899999999999999999999999998874 4654 5688999999999999999999885
No 27
>PRK07757 acetyltransferase; Provisional
Probab=99.50 E-value=2.6e-13 Score=82.27 Aligned_cols=72 Identities=24% Similarity=0.349 Sum_probs=58.9
Q ss_pred CeEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
+||++.+..... +.+++..++|+|+|||+|+|++|++.+++++. +.++..+.+.+. +.+||+|+||+..+.
T Consensus 52 lvG~~~l~~~~~---~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~-~~g~~~i~~~~~-----~~~~Y~k~GF~~~~~ 122 (152)
T PRK07757 52 IVGCCALHILWE---DLAEIRSLAVSEDYRGQGIGRMLVEACLEEAR-ELGVKRVFALTY-----QPEFFEKLGFREVDK 122 (152)
T ss_pred EEEEEEEEeccC---CceEEEEEEECHHHcCCCHHHHHHHHHHHHHH-hCCCCeEEEEeC-----cHHHHHHCCCEEccc
Confidence 478887765432 45789899999999999999999999999997 668888876553 368999999999875
Q ss_pred c
Q 033762 81 S 81 (112)
Q Consensus 81 ~ 81 (112)
.
T Consensus 123 ~ 123 (152)
T PRK07757 123 E 123 (152)
T ss_pred c
Confidence 3
No 28
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.49 E-value=3.4e-13 Score=96.52 Aligned_cols=80 Identities=18% Similarity=0.236 Sum_probs=65.9
Q ss_pred CeEEEEEEeecC---CCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCee
Q 033762 1 MVGDVNIYMNDL---DNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 77 (112)
Q Consensus 1 ~vG~~~~~~~~~---~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~ 77 (112)
+||++....... +....+++..++|+|+|||+|+|++|++.+++++. ..|+..+.+.+..+|..|++||+|+||+.
T Consensus 136 IVG~~~~~~~~~~~~d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~-~~G~~~i~L~V~~~N~~Ai~fY~klGf~~ 214 (547)
T TIGR03103 136 IIGTVMGVDHRKAFNDPEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQ-SRGCAYMDLSVMHDNEQAIALYEKLGFRR 214 (547)
T ss_pred EEEEEEEEeccccccCCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HCCCCEEEEEEcCCCHHHHHHHHHCCCEE
Confidence 478776432211 11134688899999999999999999999999987 67999999999999999999999999999
Q ss_pred eccc
Q 033762 78 ISYS 81 (112)
Q Consensus 78 ~~~~ 81 (112)
++..
T Consensus 215 ~~~y 218 (547)
T TIGR03103 215 IPVF 218 (547)
T ss_pred eeEE
Confidence 8743
No 29
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.47 E-value=1.1e-12 Score=80.63 Aligned_cols=79 Identities=29% Similarity=0.404 Sum_probs=65.2
Q ss_pred eEEEEEEeecC--CCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeec
Q 033762 2 VGDVNIYMNDL--DNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (112)
Q Consensus 2 vG~~~~~~~~~--~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~ 79 (112)
+|++.+.+..+ ....+++.+..+ +|++||+|+|+++++.+++.+. .+|++.+.+.+.++|.+|+++.+++||+.+|
T Consensus 65 ~G~a~~~~fr~r~ay~~tve~SiYv-~~~~~g~GiG~~Ll~~Li~~~~-~~g~~~lva~I~~~n~aSi~lh~~~GF~~~G 142 (169)
T COG1247 65 LGYASAGPFRERPAYRHTVELSIYL-DPAARGKGLGKKLLQALITEAR-ALGVRELVAGIESDNLASIALHEKLGFEEVG 142 (169)
T ss_pred EEEEEeeeccCccccceEEEEEEEE-CcccccccHHHHHHHHHHHHHH-hCCeEEEEEEEcCCCcHhHHHHHHCCCEEec
Confidence 56666655433 334556655555 7999999999999999999987 7899999999999999999999999999999
Q ss_pred ccc
Q 033762 80 YSE 82 (112)
Q Consensus 80 ~~~ 82 (112)
..+
T Consensus 143 ~~~ 145 (169)
T COG1247 143 TFP 145 (169)
T ss_pred ccc
Confidence 433
No 30
>PRK10514 putative acetyltransferase; Provisional
Probab=99.47 E-value=3.4e-13 Score=81.09 Aligned_cols=68 Identities=22% Similarity=0.383 Sum_probs=54.4
Q ss_pred CeEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
+||++.+.. .++..++++|+|||+|+|++|++.+++.+ +.+.+.+...|++|++||+|+||+..+.
T Consensus 61 ~iG~~~~~~--------~~~~~~~v~p~~rgkGig~~Ll~~~~~~~------~~i~~~v~~~N~~a~~~yek~Gf~~~~~ 126 (145)
T PRK10514 61 PVGFMLLSG--------GHMEALFVDPDVRGCGVGRMLVEHALSLH------PELTTDVNEQNEQAVGFYKKMGFKVTGR 126 (145)
T ss_pred EEEEEEEec--------CcEeEEEECHHhccCCHHHHHHHHHHHhc------cccEEEeecCCHHHHHHHHHCCCEEecc
Confidence 367766531 23556788999999999999988888753 3577889999999999999999999986
Q ss_pred cc
Q 033762 81 SE 82 (112)
Q Consensus 81 ~~ 82 (112)
..
T Consensus 127 ~~ 128 (145)
T PRK10514 127 SE 128 (145)
T ss_pred cc
Confidence 43
No 31
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.46 E-value=5.6e-13 Score=89.95 Aligned_cols=73 Identities=19% Similarity=0.313 Sum_probs=62.4
Q ss_pred CeEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeC--CccHHHHHHHHhCCCeee
Q 033762 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIG--ESNGASLRLFQKLGFEDI 78 (112)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~--~~n~~s~~~y~~~Gf~~~ 78 (112)
+||++.+.... ..++|..++++|++||+|+|+.|++.+++.+. ..|++.+.+.+. ..|..++.||+++||+.+
T Consensus 245 ivG~~~~~~~~----~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~-~~G~~~i~l~v~~~~~N~~A~~fY~~~GF~~~ 319 (320)
T TIGR01686 245 IIGIFVFEKKE----GNLFIDDLCMSCRALGRGVETRMLRWLFEQAL-DLGNHNARLYYRRTERNMPFLSFYEQIGFEDE 319 (320)
T ss_pred eEEEEEEEecC----CcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHH-HcCCCeEEEEEeeCCCchHHHHHHHHcCCccC
Confidence 46666554322 56799999999999999999999999999997 679999999885 479999999999999864
No 32
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=99.46 E-value=6.8e-13 Score=76.91 Aligned_cols=63 Identities=25% Similarity=0.413 Sum_probs=50.9
Q ss_pred CeEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCC
Q 033762 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 75 (112)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf 75 (112)
+||++.+. + ..+|..++|+|+|||+|+|++|++.++++++ . +++.+.+. .|..+.+||+++||
T Consensus 55 ivG~~~~~---~----~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~-~-~~~~l~~~---~~~~a~~~y~~~GF 117 (117)
T PF13673_consen 55 IVGFAWLE---P----DGEISHLYVLPEYRGRGIGRALLDAAEKEAK-D-GIRRLTVE---ANERARRFYRKLGF 117 (117)
T ss_dssp EEEEEEEE---T----CEEEEEEEE-GGGTTSSHHHHHHHHHHHHHT-T-TCEEEEEE---C-HHHHHHHHHTT-
T ss_pred EEEEEEEc---C----CCeEEEEEEChhhcCCcHHHHHHHHHHHHHH-c-CCcEEEEE---eCHHHHHHHHhCCC
Confidence 47777764 1 2348899999999999999999999999984 5 88877776 89999999999998
No 33
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.45 E-value=1e-12 Score=79.00 Aligned_cols=75 Identities=21% Similarity=0.322 Sum_probs=64.3
Q ss_pred CeEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
+|||+.+.+.... +.+++..++|+|++|++|+|..|+..++..|+ ..|++++++.+. .+..|++++||+.+..
T Consensus 51 viGC~aL~~~~~~--~~gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar-~~gi~~lf~LTt----~~~~~F~~~GF~~vd~ 123 (153)
T COG1246 51 VIGCAALHPVLEE--DLGELRSLAVHPDYRGSGRGERLLERLLADAR-ELGIKELFVLTT----RSPEFFAERGFTRVDK 123 (153)
T ss_pred EEEEEeecccCcc--CeeeEEEEEECHHhcCCCcHHHHHHHHHHHHH-HcCCceeeeeec----ccHHHHHHcCCeECcc
Confidence 5899988863332 67999999999999999999999999999997 789999988774 5678999999999875
Q ss_pred cc
Q 033762 81 SE 82 (112)
Q Consensus 81 ~~ 82 (112)
..
T Consensus 124 ~~ 125 (153)
T COG1246 124 DE 125 (153)
T ss_pred cc
Confidence 44
No 34
>PRK07922 N-acetylglutamate synthase; Validated
Probab=99.45 E-value=1.3e-12 Score=80.95 Aligned_cols=71 Identities=23% Similarity=0.360 Sum_probs=58.1
Q ss_pred CeEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
+||++.+..... ..+++..++|+|++||+|+|++|++.++++++ ..|++.+.+.+. +.+||+|+||+.++.
T Consensus 57 iiG~~~~~~~~~---~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~-~~g~~~l~~~~~-----~~~fY~k~GF~~~~~ 127 (169)
T PRK07922 57 VVGCGALHVMWE---DLAEIRTVAVDPAARGRGVGHAIVERLLDVAR-ELGLSRVFVLTF-----EVEFFARHGFVEIDG 127 (169)
T ss_pred EEEEEEEeecCC---CceEEEEEEECHHHhCCCHHHHHHHHHHHHHH-HcCCCEEEEEec-----cHHHHHHCCCEECcc
Confidence 467776654321 45789999999999999999999999999998 679999987664 267999999999863
No 35
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=99.44 E-value=1.3e-12 Score=78.09 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=68.7
Q ss_pred CeEEEEEEeecC--CCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeee
Q 033762 1 MVGDVNIYMNDL--DNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDI 78 (112)
Q Consensus 1 ~vG~~~~~~~~~--~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~ 78 (112)
++|++.++..-. ...+..+|.-++|.|.|||+|+|+.|++.+.+.|. ++|+.++...|..-|..|+.||++.|++..
T Consensus 66 ~aGf~~yf~~ystW~~k~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~-~~G~~rv~w~vldwN~rAi~lY~k~gaq~l 144 (163)
T KOG3216|consen 66 VAGFALYFNNYSTWLGKQGIYLEDLYVREQYRGKGIGSKLLKFVAEEAD-KLGTPRVEWVVLDWNHRAILLYEKVGAQDL 144 (163)
T ss_pred eeEEeeeecccccccccceEEEEeeEecchhcccChHHHHHHHHHHHHH-HcCCCcEEEEEeccchhHHHHHHHhCcccc
Confidence 468887765432 23367899999999999999999999999999997 789999999999999999999999999977
Q ss_pred cc
Q 033762 79 SY 80 (112)
Q Consensus 79 ~~ 80 (112)
..
T Consensus 145 ~~ 146 (163)
T KOG3216|consen 145 KE 146 (163)
T ss_pred ce
Confidence 64
No 36
>PRK10562 putative acetyltransferase; Provisional
Probab=99.44 E-value=1e-12 Score=79.17 Aligned_cols=67 Identities=15% Similarity=0.284 Sum_probs=54.6
Q ss_pred CeEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
+||++.+... ..++.++++|+|||+|+|+.+++.+++. .+.+.+.+...|..|++||+|+||+.++.
T Consensus 59 ~iG~~~~~~~-------~~i~~~~v~~~~rg~G~g~~ll~~~~~~------~~~~~~~v~~~N~~s~~~y~k~Gf~~~~~ 125 (145)
T PRK10562 59 LLGFVSVLEG-------RFVGALFVAPKAVRRGIGKALMQHVQQR------YPHLSLEVYQKNQRAVNFYHAQGFRIVDS 125 (145)
T ss_pred EEEEEEEeec-------cEEEEEEECHHHcCCCHHHHHHHHHHhh------CCeEEEEEEcCChHHHHHHHHCCCEEccc
Confidence 3677766422 2577788999999999999988877663 35678888999999999999999999985
No 37
>PHA01807 hypothetical protein
Probab=99.43 E-value=1.3e-12 Score=79.62 Aligned_cols=72 Identities=14% Similarity=0.166 Sum_probs=58.1
Q ss_pred CeEEEEEEeecCCC-CCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhC
Q 033762 1 MVGDVNIYMNDLDN-LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKL 73 (112)
Q Consensus 1 ~vG~~~~~~~~~~~-~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~ 73 (112)
+||++.+....... .....+..++|+|+|||+|+|++|++.++++++ ..|+..+.+++...|.++++||++.
T Consensus 64 lvG~~~l~~~~~~~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar-~~G~~~l~l~v~~~n~~a~~~y~~~ 136 (153)
T PHA01807 64 LAGIAVLVFEDDPHVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAG-EGNLPLIAFSHREGEGRYTIHYRRV 136 (153)
T ss_pred EEEEEEEEcCCCcceeeeccceeEEECHHHcCCCHHHHHHHHHHHHHH-HCCCCEEEEEecCCcHHHHHHHHhc
Confidence 47888776544321 122334457899999999999999999999997 6699999999999999999999964
No 38
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=1.8e-12 Score=77.21 Aligned_cols=90 Identities=46% Similarity=0.754 Sum_probs=78.1
Q ss_pred CeEEEEEEeecCCC-------CCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhC
Q 033762 1 MVGDVNIYMNDLDN-------LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKL 73 (112)
Q Consensus 1 ~vG~~~~~~~~~~~-------~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~ 73 (112)
+||.++++.....+ -.++++..++..|..||+|+|++++..++.|+...+++.+....+...|++|+++|.|+
T Consensus 84 MvGDvNlFlt~~~~~~n~s~~~~~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFkk~ 163 (185)
T KOG4135|consen 84 MVGDVNLFLTTSPDTENPSDDVITGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFKKF 163 (185)
T ss_pred hccceeeEEecCCCcCCcccceeeeeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHHHh
Confidence 57888888765443 24689999999999999999999999999999988899999999999999999999999
Q ss_pred CCeeeccccceecccee
Q 033762 74 GFEDISYSEIFKEVTLE 90 (112)
Q Consensus 74 Gf~~~~~~~~~~~~~~~ 90 (112)
+|..+.....|..+.+.
T Consensus 164 ~f~q~~~ns~f~~v~Le 180 (185)
T KOG4135|consen 164 LFTQVFYNSSFPHVTLE 180 (185)
T ss_pred hheeeeeeccccceEEe
Confidence 99999887777766543
No 39
>PLN02825 amino-acid N-acetyltransferase
Probab=99.37 E-value=5.2e-12 Score=89.51 Aligned_cols=75 Identities=16% Similarity=0.247 Sum_probs=63.0
Q ss_pred CeEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
+||++.+.+... ...+++..++|+|+|||+|+|++|++.++++++ +.|++++.+.+ +.+.+||+++||+..+.
T Consensus 418 IVG~aal~~~~~--~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar-~~G~~~L~Llt----t~a~~fY~k~GF~~~~~ 490 (515)
T PLN02825 418 IIACAALFPFFE--EKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAA-SLGLEKLFLLT----TRTADWFVRRGFSECSI 490 (515)
T ss_pred EEEEEEEEeecC--CCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HCCCCEEEEEe----CcHHHHHHHCCCEEeCh
Confidence 578888765432 256899999999999999999999999999997 67999998876 34689999999999875
Q ss_pred cc
Q 033762 81 SE 82 (112)
Q Consensus 81 ~~ 82 (112)
..
T Consensus 491 ~~ 492 (515)
T PLN02825 491 ES 492 (515)
T ss_pred hh
Confidence 43
No 40
>PHA00673 acetyltransferase domain containing protein
Probab=99.35 E-value=1.4e-11 Score=74.81 Aligned_cols=78 Identities=14% Similarity=0.198 Sum_probs=65.0
Q ss_pred CeEEEEEEeecCC---CCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCee
Q 033762 1 MVGDVNIYMNDLD---NLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 77 (112)
Q Consensus 1 ~vG~~~~~~~~~~---~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~ 77 (112)
+||++.+...... ....+.|..+.|+|++||+|||++|++.++++++ ..|+..+++...|+ .....||.++|++.
T Consensus 66 vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar-~~Gc~~lyis~~p~-~~tv~fy~~~g~~~ 143 (154)
T PHA00673 66 LVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALAR-DLGATGLYVSGPTE-GRLVQLLPAAGYRE 143 (154)
T ss_pred EEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHH-HCCCCEEEEecCCC-ccchHHHHhCCchh
Confidence 5788877655432 1256799999999999999999999999999998 67999999887775 46799999999998
Q ss_pred ecc
Q 033762 78 ISY 80 (112)
Q Consensus 78 ~~~ 80 (112)
+.+
T Consensus 144 ~~~ 146 (154)
T PHA00673 144 TNR 146 (154)
T ss_pred hch
Confidence 764
No 41
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.35 E-value=6.8e-12 Score=83.42 Aligned_cols=72 Identities=17% Similarity=0.195 Sum_probs=58.9
Q ss_pred CeEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
+||++.+..... ...++..++|+|+|||+|+|++|++.+++.+. ..+.+.+...|..+++||+++||+....
T Consensus 57 ~vG~~~~~~~~~---~~~~~~~l~V~p~~rg~GiG~~Ll~~~~~~~~-----~~~~~~~~~~n~~a~~fy~~~Gf~~~~~ 128 (292)
T TIGR03448 57 IVGYANLVPARG---TDPAMAELVVHPAHRRRGIGRALIRALLAKGG-----GRLRVWAHGDLPAARALASRLGLVPTRE 128 (292)
T ss_pred EEEEEEEEcCCC---CcceEEEEEECHhhcCCCHHHHHHHHHHHhcc-----CceEEEEcCCCHHHHHHHHHCCCEEccE
Confidence 478887665432 23578889999999999999999999998753 4567778889999999999999998864
No 42
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.34 E-value=6.9e-12 Score=83.71 Aligned_cols=67 Identities=24% Similarity=0.350 Sum_probs=56.8
Q ss_pred CeEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeec
Q 033762 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (112)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~ 79 (112)
+||++++.. .+|..++|+|+|||+|+|++|++.++++++ +.|+..+.+.+...| ..||+|+||+..+
T Consensus 17 iVG~~~l~~--------~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~-~~g~~~i~L~t~~~~---~~fYek~GF~~~~ 83 (297)
T cd02169 17 LIATGSIAG--------NVLKCVAVCPKYQGEGLALKIVSELINKAY-EEGIFHLFLFTKPKN---AKFFRGLGFKELA 83 (297)
T ss_pred EEEEEEecc--------CEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HCCCCEEEEEEcccH---HHHHHHCCCEEec
Confidence 467666531 268899999999999999999999999997 669999999887654 5899999999988
No 43
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.32 E-value=1.5e-11 Score=86.31 Aligned_cols=74 Identities=16% Similarity=0.279 Sum_probs=60.7
Q ss_pred CeEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
+||++.+..... ...++|..++|+|+|||+|+|++|++.+++++. ..|++.+.+.. ..++.||+++||+.++.
T Consensus 345 iVG~~~~~~~~~--~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~-~~g~~~l~l~~----~~a~~fY~k~GF~~~g~ 417 (441)
T PRK05279 345 IIGCAALYPFPE--EKMGEMACLAVHPDYRGSGRGERLLKRIEQRAR-QLGLKRLFVLT----TRTAHWFLERGFVPVDV 417 (441)
T ss_pred EEEEEEEEEcCC--CCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HcCCCEEEEec----chHHHHHHHCcCEECCh
Confidence 478877665432 256899999999999999999999999999997 66998886543 46799999999999985
Q ss_pred c
Q 033762 81 S 81 (112)
Q Consensus 81 ~ 81 (112)
.
T Consensus 418 ~ 418 (441)
T PRK05279 418 D 418 (441)
T ss_pred h
Confidence 3
No 44
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.31 E-value=1.8e-11 Score=85.58 Aligned_cols=74 Identities=16% Similarity=0.262 Sum_probs=60.4
Q ss_pred CeEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
+||++.+..... ...+++..++|+|+|||+|+|++|++.+++++. +.|++.+.+. ..| +.+||+++||+.++.
T Consensus 333 iVG~~~~~~~~~--~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~-~~G~~~l~v~--~~~--a~~fY~k~GF~~~g~ 405 (429)
T TIGR01890 333 IIGCAALYPYAE--EDCGEMACLAVSPEYQDGGRGERLLAHIEDRAR-QMGISRLFVL--TTR--TGHWFRERGFQTASV 405 (429)
T ss_pred EEEEEEEEecCC--CCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HcCCCEEEEe--ecc--hHHHHHHCCCEECCh
Confidence 478887766432 256899999999999999999999999999997 6698887543 234 579999999999986
Q ss_pred c
Q 033762 81 S 81 (112)
Q Consensus 81 ~ 81 (112)
.
T Consensus 406 ~ 406 (429)
T TIGR01890 406 D 406 (429)
T ss_pred h
Confidence 4
No 45
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.31 E-value=1.7e-11 Score=89.00 Aligned_cols=73 Identities=23% Similarity=0.254 Sum_probs=60.5
Q ss_pred CeEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
+||++.+...+. ..++|..++|+|+|||+|+|+.|++.++++++ +.|++.+.+.+ .+..||+|+||+.++.
T Consensus 514 IVG~~~l~~~~~---~~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak-~~g~~~i~l~~-----~a~~FYek~GF~~~~~ 584 (614)
T PRK12308 514 VTGCASLYIYDS---GLAEIRSLGVEAGWQVQGQGSALVQYLVEKAR-QMAIKKVFVLT-----RVPEFFMKQGFSPTSK 584 (614)
T ss_pred EEEEEEEEEcCC---CeEEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HCCCCEEEEee-----CcHHHHHHCCCEECCc
Confidence 478887765432 45789999999999999999999999999997 67999888764 2468999999999986
Q ss_pred cc
Q 033762 81 SE 82 (112)
Q Consensus 81 ~~ 82 (112)
..
T Consensus 585 ~~ 586 (614)
T PRK12308 585 SL 586 (614)
T ss_pred cc
Confidence 54
No 46
>PRK09831 putative acyltransferase; Provisional
Probab=99.29 E-value=1.6e-11 Score=74.23 Aligned_cols=56 Identities=11% Similarity=0.368 Sum_probs=46.1
Q ss_pred EEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecccc
Q 033762 18 AEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (112)
Q Consensus 18 ~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~~~ 82 (112)
.++..++++|++||+|+|++|++.+++.+. . + .+. .|..+++||+|+||+.++..+
T Consensus 73 ~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~-~-----l--~v~-~~~~a~~~Y~k~Gf~~~g~~~ 128 (147)
T PRK09831 73 HYIDMLFVDPEYTRRGVASALLKPLIKSES-E-----L--TVD-ASITAKPFFERYGFQTVKQQR 128 (147)
T ss_pred ceeeeEEECHHHcCCCHHHHHHHHHHHHhh-h-----e--Eee-cchhhHHHHHHCCCEEeeccc
Confidence 357788899999999999999999999875 2 2 333 357899999999999999654
No 47
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=99.28 E-value=2.7e-11 Score=74.89 Aligned_cols=81 Identities=17% Similarity=0.089 Sum_probs=66.7
Q ss_pred CeEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
+||+..+.-.-.......++.-+=+.++|||+|||+.|++.+...+. ..+.+.|.++|...|.+|+.||.++||.....
T Consensus 104 ~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~-~~~~~kVmLTVf~~N~~al~Fy~~~gf~~~~~ 182 (202)
T KOG2488|consen 104 LVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLAD-SRHMRKVMLTVFSENIRALGFYHRLGFVVDEE 182 (202)
T ss_pred eeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHH-HHHhhhheeeeecccchhHHHHHHcCcccCCC
Confidence 36777776544333357777778888999999999999999999886 55788899999999999999999999998775
Q ss_pred cc
Q 033762 81 SE 82 (112)
Q Consensus 81 ~~ 82 (112)
.+
T Consensus 183 sp 184 (202)
T KOG2488|consen 183 SP 184 (202)
T ss_pred CC
Confidence 44
No 48
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=99.27 E-value=3.4e-11 Score=70.80 Aligned_cols=72 Identities=24% Similarity=0.409 Sum_probs=53.4
Q ss_pred CeEEEEEEeecCC----CCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCe
Q 033762 1 MVGDVNIYMNDLD----NLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 76 (112)
Q Consensus 1 ~vG~~~~~~~~~~----~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~ 76 (112)
+||.+.+.+.... ....+.+..++|+|+|||+|++++|++.+++.+. ..|+..+.+.. . +..||+++||+
T Consensus 52 ivg~~~~~~~~~~~~g~~~~~~~i~~v~v~p~~R~~Gl~~~L~~~~~~~~~-~~g~~~~~l~~--~---~~~~Y~~~G~~ 125 (127)
T PF13527_consen 52 IVGHVGLIPRRLSVGGKKFKAAYIGDVAVDPEYRGRGLGRQLMRALLERAR-ERGVPFIFLFP--S---SPPFYRRFGFE 125 (127)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHH-HTT-SEEEEE---S---SHHHHHHTTEE
T ss_pred EEEEEEEEEEEEEECCEEEEEEEEEEEEECHHHcCCCHHHHHHHHHHHHHH-hCCCCEEEEec--C---ChhhhhcCCCE
Confidence 4777777654211 1246899999999999999999999999999997 44888776655 2 25799999998
Q ss_pred ee
Q 033762 77 DI 78 (112)
Q Consensus 77 ~~ 78 (112)
.+
T Consensus 126 ~~ 127 (127)
T PF13527_consen 126 YA 127 (127)
T ss_dssp EE
T ss_pred EC
Confidence 53
No 49
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=99.26 E-value=6.3e-11 Score=76.80 Aligned_cols=66 Identities=26% Similarity=0.408 Sum_probs=56.1
Q ss_pred CCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 13 DNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 13 ~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
..+..+.|.-++++|+|||+|+|+.++..+.....++ |.+ -.+.+...|+.|.++|+|+||+..|+
T Consensus 197 ~~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~e-Gk~-~~L~~~~~N~~A~~iY~riGF~~~g~ 262 (268)
T COG3393 197 ENPAYAQINGVYTHPEYRGKGYATALVATLAAKLLAE-GKI-PCLFVNSDNPVARRIYQRIGFREIGE 262 (268)
T ss_pred cCCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhC-CCe-eEEEEecCCHHHHHHHHHhCCeecce
Confidence 3346799999999999999999999999999988744 543 33666689999999999999999883
No 50
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.25 E-value=3.4e-11 Score=70.76 Aligned_cols=75 Identities=17% Similarity=0.287 Sum_probs=62.6
Q ss_pred CeEEEEEEeecCCC---CCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCee
Q 033762 1 MVGDVNIYMNDLDN---LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 77 (112)
Q Consensus 1 ~vG~~~~~~~~~~~---~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~ 77 (112)
+||..++.....-. ...++|.-++|++++||+++|+.++..+++.++ .+|+-.+.+.+.+.|.. ||+|+||..
T Consensus 66 vigtatL~IE~KfIh~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k-~lgcYKi~LdC~~~nv~---FYeKcG~s~ 141 (150)
T KOG3396|consen 66 VIGTATLFIERKFIHGCGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAK-SLGCYKIILDCDPKNVK---FYEKCGYSN 141 (150)
T ss_pred EEEEEEEEEehhhhhcccccCceeEEEeChhhhhhHHhHHHHHHHHHHHH-hcCcEEEEEecchhhhh---HHHHcCccc
Confidence 35666665443321 256899999999999999999999999999997 88999999999999855 999999987
Q ss_pred ec
Q 033762 78 IS 79 (112)
Q Consensus 78 ~~ 79 (112)
.+
T Consensus 142 ~~ 143 (150)
T KOG3396|consen 142 AG 143 (150)
T ss_pred cc
Confidence 76
No 51
>PRK13688 hypothetical protein; Provisional
Probab=99.24 E-value=9.9e-11 Score=71.64 Aligned_cols=57 Identities=25% Similarity=0.355 Sum_probs=44.1
Q ss_pred CeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeeccc
Q 033762 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYS 81 (112)
Q Consensus 16 ~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~~ 81 (112)
+.++|..++|+|+|||+|+|++|++.+.+ .++. + .+...| .+..||+|+||+.++..
T Consensus 78 ~~~~L~~l~V~p~~rgkGiG~~Ll~~a~~-----~~~~-~--~~~~~~-~a~~FY~k~GF~~~~~~ 134 (156)
T PRK13688 78 DYLELWKLEVLPKYQNRGYGEMLVDFAKS-----FQLP-I--KTIARN-KSKDFWLKLGFTPVEYK 134 (156)
T ss_pred CeEEEEEEEECHHHcCCCHHHHHHHHHHH-----hCCe-E--EEEecc-chHHHHHhCCCEEeEEe
Confidence 56899999999999999999999875432 2333 2 333445 47899999999999855
No 52
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=99.20 E-value=8.7e-11 Score=71.69 Aligned_cols=78 Identities=23% Similarity=0.210 Sum_probs=68.2
Q ss_pred CeEEEEEEeecCCC--CCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeee
Q 033762 1 MVGDVNIYMNDLDN--LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDI 78 (112)
Q Consensus 1 ~vG~~~~~~~~~~~--~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~ 78 (112)
+||++++...-.+. ..-++|++-+. |+.||+|+|++|++.+++.|+ .+|++.+.++++++|.+|.+.-+++|=..+
T Consensus 80 ivG~i~lRh~Ln~~ll~~gGHIGY~Vr-PseR~KGYA~emLkl~L~~ar-~lgi~~Vlvtcd~dN~ASrkvI~~NGGile 157 (174)
T COG3981 80 IVGFINLRHQLNDFLLEEGGHIGYSVR-PSERRKGYAKEMLKLALEKAR-ELGIKKVLVTCDKDNIASRKVIEANGGILE 157 (174)
T ss_pred EEEEEEeeeecchHHHhcCCcccceeC-hhhhccCHHHHHHHHHHHHHH-HcCCCeEEEEeCCCCchhhHHHHhcCCEEe
Confidence 58889887654432 23589999996 999999999999999999997 789999999999999999999999999888
Q ss_pred cc
Q 033762 79 SY 80 (112)
Q Consensus 79 ~~ 80 (112)
.+
T Consensus 158 ~~ 159 (174)
T COG3981 158 NE 159 (174)
T ss_pred EE
Confidence 74
No 53
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=99.19 E-value=4e-10 Score=76.40 Aligned_cols=60 Identities=18% Similarity=0.261 Sum_probs=53.6
Q ss_pred EEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecccc
Q 033762 19 EVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (112)
Q Consensus 19 ~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~~~ 82 (112)
.+.+++|+|+|||+|+|++|++.++++++ ..|...+.+.+.+.| ..||+++||+..+...
T Consensus 52 ~ik~vaV~~~~rG~Glg~~L~~~L~~~a~-~~G~~~l~l~Tk~~~---~~fy~klGF~~i~~~~ 111 (332)
T TIGR00124 52 VIKCVAIDESLRGEGLALQLMTELENLAY-ELGRFHLFIFTKPEY---AALFEYCGFKTLAEAK 111 (332)
T ss_pred EEEEEEEcHHHcCCCHHHHHHHHHHHHHH-HcCCCEEEEEECchH---HHHHHHcCCEEeeeec
Confidence 48899999999999999999999999998 669999999998766 4699999999998654
No 54
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=99.13 E-value=4.2e-10 Score=66.98 Aligned_cols=76 Identities=14% Similarity=0.240 Sum_probs=61.5
Q ss_pred CeEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
+|+++.+.+..... ....|+.++|+|++||+|+|++|+..+++.+.+...-+.+++ ......+.||.+.||..+++
T Consensus 61 LvAyaRLl~~~~~~-~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l---~AQahLq~fYa~~GFv~~~e 136 (155)
T COG2153 61 LVAYARLLPPGAEY-EEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYL---GAQAHLQDFYASFGFVRVGE 136 (155)
T ss_pred EEEEEecCCCCCCc-CceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEE---ehHHHHHHHHHHhCcEEcCc
Confidence 35666666665555 337899999999999999999999999999987666666644 45667899999999999985
No 55
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=99.10 E-value=7.9e-10 Score=66.78 Aligned_cols=86 Identities=22% Similarity=0.271 Sum_probs=70.8
Q ss_pred CeEEEEEEeec-CC-CCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHH-hCCCee
Q 033762 1 MVGDVNIYMND-LD-NLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQ-KLGFED 77 (112)
Q Consensus 1 ~vG~~~~~~~~-~~-~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~-~~Gf~~ 77 (112)
+||.+-..... ++ .+..++|..++|+..||+.|+|++|+.....-..+..+.+.+.+.|..+|.+|+.+|. .+||+.
T Consensus 53 iVGYvlAkmee~p~~~~~hGhItSlaV~rs~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~LY~~tl~F~v 132 (193)
T KOG3235|consen 53 IVGYVLAKMEEDPDDEPPHGHITSLAVKRSYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHLYKNTLGFVV 132 (193)
T ss_pred EEEEeeeehhhcccCCCCCCeeEEeeehhhHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHhhhhccceEE
Confidence 46766554333 22 2357899999999999999999999999888777778999999999999999999999 999999
Q ss_pred eccccceec
Q 033762 78 ISYSEIFKE 86 (112)
Q Consensus 78 ~~~~~~~~~ 86 (112)
.+..+.|..
T Consensus 133 ~eve~kYYa 141 (193)
T KOG3235|consen 133 CEVEPKYYA 141 (193)
T ss_pred eeccccccc
Confidence 987665544
No 56
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=99.09 E-value=3.4e-10 Score=70.61 Aligned_cols=71 Identities=15% Similarity=0.270 Sum_probs=63.5
Q ss_pred EEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeeccccceeccc
Q 033762 18 AEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIFKEVT 88 (112)
Q Consensus 18 ~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~~~~~~~~~ 88 (112)
..|..+.|.|.||.+|||+.+++.+.+++.+...++.+++.+...|..++.||++.||+.+.....|....
T Consensus 90 ~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~~~gF~~~~~~~~~y~~~ 160 (187)
T KOG3138|consen 90 IYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYEKRGFEIVERLKNYYSIL 160 (187)
T ss_pred eEEEeecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHHhcCceEeeccccccccc
Confidence 67888889999999999999999999999744348899999999999999999999999999877776653
No 57
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=99.07 E-value=6e-10 Score=68.26 Aligned_cols=74 Identities=16% Similarity=0.235 Sum_probs=62.2
Q ss_pred CeEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
+||...+....+.. +..++..++|+.+.||+|+|+.+++.+++|++ ..|++.+++.+... .+||+++||+...-
T Consensus 68 VigH~rLS~i~n~~-~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R-~~gf~~~yLsT~DQ----~~FYe~lGYe~c~P 141 (225)
T KOG3397|consen 68 VLGHSRLSHLPNRD-HALWVESVVVKKDQRGLGFGKFLMKSTEKWMR-EKGFNEAYLSTDDQ----CRFYESLGYEKCDP 141 (225)
T ss_pred eeeeeccccCCCCC-ceeEEEEEEEehhhccccHHHHHHHHHHHHHH-Hhhhhheeeecccc----hhhhhhhcccccCc
Confidence 46667666666555 77899999999999999999999999999998 45899999887654 57999999998763
No 58
>PRK01346 hypothetical protein; Provisional
Probab=99.05 E-value=2.1e-09 Score=74.77 Aligned_cols=74 Identities=20% Similarity=0.285 Sum_probs=57.5
Q ss_pred CeEEEEEEeecC-----CCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCC
Q 033762 1 MVGDVNIYMNDL-----DNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 75 (112)
Q Consensus 1 ~vG~~~~~~~~~-----~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf 75 (112)
+||++.+..... .....+.|..++|+|+|||+|+|++|++.+++.++ +.|...+.+.+.. ..||+++||
T Consensus 58 lvg~~~~~~~~~~~~~~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~-~~g~~~~~L~~~~-----~~~Y~r~Gf 131 (411)
T PRK01346 58 VVGTAGAFDLRLTVPGGAVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIR-ERGEPVAALTASE-----GGIYGRFGY 131 (411)
T ss_pred EEEEEEEeccccccCCCCccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHH-HCCCcEEEEECCc-----hhhHhhCCC
Confidence 467777654321 11246899999999999999999999999999997 5688777776543 369999999
Q ss_pred eeecc
Q 033762 76 EDISY 80 (112)
Q Consensus 76 ~~~~~ 80 (112)
.....
T Consensus 132 ~~~~~ 136 (411)
T PRK01346 132 GPATY 136 (411)
T ss_pred eeccc
Confidence 98864
No 59
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=99.03 E-value=1.7e-09 Score=59.66 Aligned_cols=62 Identities=29% Similarity=0.484 Sum_probs=56.3
Q ss_pred CeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeec
Q 033762 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (112)
Q Consensus 16 ~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~ 79 (112)
+++++.+.++-|+|||||+.+.++...+..+. +.|+. +++.|.++|+.++++..++||....
T Consensus 18 qtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~-~~g~P-~Y~hv~~~N~~~~r~~~~lg~~~~p 79 (89)
T PF08444_consen 18 QTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLH-KLGFP-FYGHVDEDNEASQRLSKSLGFIFMP 79 (89)
T ss_pred ccccccccccCHhHhcCCHHHHHHHHHHHHHH-HCCCC-eEeehHhccHHHHHHHHHCCCeecC
Confidence 67899999999999999999999999999986 66776 7799999999999999999998764
No 60
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=99.02 E-value=2.8e-09 Score=76.04 Aligned_cols=76 Identities=14% Similarity=0.096 Sum_probs=56.9
Q ss_pred CeEEEEEEeecCC-----CCCeEEEEEEE-----------eCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccH
Q 033762 1 MVGDVNIYMNDLD-----NLELAEVEIMI-----------AEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNG 64 (112)
Q Consensus 1 ~vG~~~~~~~~~~-----~~~~~~i~~~~-----------v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~ 64 (112)
+||++.+...... ...++.|.-+. .+++|||+|+|++|++.++++|+ +.|++.+.+. +|.
T Consensus 425 l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar-~~G~~~i~v~---s~~ 500 (522)
T TIGR01211 425 LIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAA-EEGSEKILVI---SGI 500 (522)
T ss_pred EEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHH-HCCCCEEEEe---eCc
Confidence 4778877654421 11234444443 25899999999999999999998 5699988763 378
Q ss_pred HHHHHHHhCCCeeecc
Q 033762 65 ASLRLFQKLGFEDISY 80 (112)
Q Consensus 65 ~s~~~y~~~Gf~~~~~ 80 (112)
.+++||+++||+..+.
T Consensus 501 ~A~~FY~klGf~~~g~ 516 (522)
T TIGR01211 501 GVREYYRKLGYELDGP 516 (522)
T ss_pred hHHHHHHHCCCEEEcc
Confidence 9999999999998873
No 61
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=98.94 E-value=2.1e-08 Score=60.57 Aligned_cols=69 Identities=16% Similarity=0.156 Sum_probs=59.1
Q ss_pred eEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeeccccceec
Q 033762 17 LAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIFKE 86 (112)
Q Consensus 17 ~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~~~~~~~ 86 (112)
.+++.-+.|.|+||+.|+|+.++..+.+-.. ..+.--+.+.|..+|+.|+.+|+++||........|..
T Consensus 69 h~HvTAltVap~~Rrl~la~~lm~~led~~d-~~~a~fvDLfVr~sN~iAI~mYkkLGY~~YR~Vi~YY~ 137 (173)
T KOG3234|consen 69 HGHVTALTVAPDYRRLGLAAKLMDTLEDVSD-VDNAYFVDLFVRVSNQIAIDMYKKLGYSVYRTVIEYYS 137 (173)
T ss_pred eeEEEEEEechhHHHHHHHHHHHHHHHHHHH-hhhhheeeeeeeccchhHHHHHHhcCceEEEeeeeeec
Confidence 4788899999999999999999999998764 44677788999999999999999999998776554444
No 62
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=98.91 E-value=3.5e-08 Score=65.02 Aligned_cols=64 Identities=30% Similarity=0.324 Sum_probs=48.6
Q ss_pred CeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeeccccce
Q 033762 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIF 84 (112)
Q Consensus 16 ~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~~~~~ 84 (112)
+.++|+.-. +|+|||+|+|+.+...++..|.+ .|+...+ .+ .|.+|+++.+|+||+.......|
T Consensus 188 ~~~EI~I~T-~~~yR~kGLA~~~aa~~I~~Cl~-~~l~P~W-Dc--~N~~S~~lA~kLGf~~~~~Y~~Y 251 (265)
T PF12746_consen 188 NGIEIDIET-HPEYRGKGLATAVAAAFILECLE-NGLYPSW-DC--HNLASIALAEKLGFHFDFEYTAY 251 (265)
T ss_dssp TEEEEEEEE--CCCTTSSHHHHHHHHHHHHHHH-TT-EEE--EE--SSHHHHHHHHHCT--EEEEEEEE
T ss_pred CEEEEEEEE-CHHhhcCCHHHHHHHHHHHHHHH-CCCCcCe-eC--CCHHHHHHHHHcCCcccceeeee
Confidence 557888777 59999999999999999999985 4665543 23 59999999999999998854433
No 63
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=98.91 E-value=1.5e-08 Score=62.62 Aligned_cols=75 Identities=15% Similarity=0.225 Sum_probs=60.9
Q ss_pred CeEEEEEEeecCC--CCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeee
Q 033762 1 MVGDVNIYMNDLD--NLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDI 78 (112)
Q Consensus 1 ~vG~~~~~~~~~~--~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~ 78 (112)
+||.+.+.+..-. .....-+.-++|+|++||+|||++|++..++.++ ..|+..+.+.=++. +|.++||+..
T Consensus 57 vvG~Il~s~v~~~g~~~~~~~LaPLaV~p~~qg~GIG~~Lvr~~le~a~-~~G~~~v~vlGdp~------YY~rfGF~~~ 129 (171)
T COG3153 57 VVGHILFSPVTVGGEELGWLGLAPLAVDPEYQGQGIGSALVREGLEALR-LAGASAVVVLGDPT------YYSRFGFEPA 129 (171)
T ss_pred EEEEEEEeEEEecCcccceEEEEeEEEchhhcCCcHHHHHHHHHHHHHH-HCCCCEEEEecCcc------cccccCcEEc
Confidence 4788888776554 3366789999999999999999999999999997 67998776554443 8999999998
Q ss_pred cccc
Q 033762 79 SYSE 82 (112)
Q Consensus 79 ~~~~ 82 (112)
....
T Consensus 130 ~~~~ 133 (171)
T COG3153 130 AGAK 133 (171)
T ss_pred cccc
Confidence 7543
No 64
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=98.87 E-value=2.1e-08 Score=51.02 Aligned_cols=55 Identities=20% Similarity=0.231 Sum_probs=45.4
Q ss_pred CeEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEE
Q 033762 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRA 57 (112)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~ 57 (112)
+||++.+...+... ..+++..+.++|+|||+|+|++++..++++++ +.+.+.+.+
T Consensus 10 ~ig~~~~~~~~~~~-~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~-~~~~~~v~~ 64 (65)
T cd04301 10 IVGFASLSPDGSGG-DTAYIGDLAVLPEYRGKGIGSALLEAAEEEAR-ERGAKRLRL 64 (65)
T ss_pred EEEEEEEEecCCCC-ccEEEEEEEECHHHcCcCHHHHHHHHHHHHHH-HcCCcEEEe
Confidence 47888777765433 67899999999999999999999999999998 468887754
No 65
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=98.73 E-value=1.7e-07 Score=55.11 Aligned_cols=68 Identities=21% Similarity=0.360 Sum_probs=59.8
Q ss_pred CCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeC--CccHHHHHHHHhCCCeeecccc
Q 033762 14 NLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIG--ESNGASLRLFQKLGFEDISYSE 82 (112)
Q Consensus 14 ~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~--~~n~~s~~~y~~~Gf~~~~~~~ 82 (112)
+.+-.+++.++|....||+|+|+.+.+.+.+++. ..|+..+.+++. +.|++|..|...+||..+|...
T Consensus 81 Ye~F~YvDRvVVA~~aRGrG~aRalY~Dlf~~Ae-~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a~ 150 (167)
T COG3818 81 YENFFYVDRVVVASRARGRGVARALYADLFSYAE-LAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQAT 150 (167)
T ss_pred CCceEEEEEEEEEecccccchHHHHHHHHHHHHH-hcCCceEEEEecCCCCChHHHHHhhhcCceEccceE
Confidence 3456899999999999999999999999999985 669999988776 7799999999999999998533
No 66
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=98.63 E-value=1.9e-07 Score=59.00 Aligned_cols=66 Identities=17% Similarity=0.231 Sum_probs=45.7
Q ss_pred CeEEEEEEEeCcccccCcHHHHHHHHHHHHHH------------------------HhcCccEEEEEeCCccHHHHHHHH
Q 033762 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAV------------------------ENFGIHVFRAKIGESNGASLRLFQ 71 (112)
Q Consensus 16 ~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~------------------------~~~~~~~l~~~~~~~n~~s~~~y~ 71 (112)
..+.|..++|+|++|++|+|+++++.+.+++. ...++.-+ .+..-.+..-.+||.
T Consensus 89 ~g~RIvRIAvhP~~q~~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDyl-GtSFG~t~~Ll~FW~ 167 (196)
T PF13718_consen 89 SGARIVRIAVHPDLQRMGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYL-GTSFGATPELLKFWQ 167 (196)
T ss_dssp EEEEEEEEEE-CCC-SSSHHHHHHHHHHHT-----------------------------S-SEE-EEEEE--HHHHHHHH
T ss_pred cceeEEEEEEChhhhcCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEE-EeccCCCHHHHHHHH
Confidence 46899999999999999999999999999982 12355544 445556788999999
Q ss_pred hCCCeeecccc
Q 033762 72 KLGFEDISYSE 82 (112)
Q Consensus 72 ~~Gf~~~~~~~ 82 (112)
|+||..+....
T Consensus 168 k~gf~pv~l~~ 178 (196)
T PF13718_consen 168 KNGFVPVYLGQ 178 (196)
T ss_dssp CTT-EEEEE-S
T ss_pred HCCcEEEEEec
Confidence 99999986433
No 67
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=98.60 E-value=1.2e-06 Score=47.63 Aligned_cols=61 Identities=20% Similarity=0.318 Sum_probs=43.1
Q ss_pred eEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHh
Q 033762 2 VGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQK 72 (112)
Q Consensus 2 vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~ 72 (112)
+|.+.+... ++...+....|+|++||+|+|+.|++.++++++ ..|.+- .|.-+-+..++++
T Consensus 11 ~a~l~Y~~~----~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~-~~~~kv-----~p~C~y~~~~~~~ 71 (78)
T PF14542_consen 11 IAELTYRED----GGVIVITHTEVPPELRGQGIAKKLVEAALDYAR-ENGLKV-----VPTCSYVAKYFRR 71 (78)
T ss_dssp EEEEEEEES----SSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHH-HTT-EE-----EETSHHHHHHHHH
T ss_pred EEEEEEEeC----CCEEEEEEEEECccccCCcHHHHHHHHHHHHHH-HCCCEE-----EEECHHHHHHHHh
Confidence 566666442 278999999999999999999999999999998 446442 2333445555544
No 68
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=98.48 E-value=2.9e-07 Score=55.60 Aligned_cols=81 Identities=9% Similarity=0.076 Sum_probs=55.9
Q ss_pred CeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeeccccceeccceeeecch
Q 033762 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIFKEVTLELPVEN 95 (112)
Q Consensus 16 ~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~~~~~~~~~~~~~~~~ 95 (112)
..+.|+.++++|+||.+|+|..|+..-+.+.-.+--.+++.+.+ ..+.+.||+++||+.+|.... +.....+..
T Consensus 100 ~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~---h~pLvPFYEr~gFk~vgp~~~---~~~~k~F~e 173 (190)
T KOG4144|consen 100 HNIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALIC---HDPLVPFYERFGFKAVGPCAI---TVGSKTFME 173 (190)
T ss_pred cceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeee---cCCccchhHhcCceeeccccc---ccccchhHH
Confidence 35899999999999999999999988776654333334554444 346788999999999995332 112234555
Q ss_pred hhHHHHH
Q 033762 96 AKREELL 102 (112)
Q Consensus 96 ~~~~~~~ 102 (112)
..|.++-
T Consensus 174 ~~w~dm~ 180 (190)
T KOG4144|consen 174 LHWSDMG 180 (190)
T ss_pred HHHHHhc
Confidence 5555443
No 69
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=98.39 E-value=1.6e-06 Score=64.14 Aligned_cols=64 Identities=14% Similarity=0.173 Sum_probs=53.7
Q ss_pred CeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecccc
Q 033762 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (112)
Q Consensus 16 ~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~~~ 82 (112)
..+.|..++|+|++|++|||+++++.+++++. .++..+ ....-.+..-.+||.|+||..+.-.+
T Consensus 530 ~G~RIvRIAvhPe~q~~GiGsrlL~~l~~~a~--~~~Dwl-gvsFG~t~~L~rFW~rnGF~pVhls~ 593 (758)
T COG1444 530 VGWRIVRIAVHPELQRMGIGSRLLALLIEEAR--KGLDWL-GVSFGYTEELLRFWLRNGFVPVHLSP 593 (758)
T ss_pred ceeeEEEEEeCHHHHhcCHHHHHHHHHHHHHh--cCCCEE-eeccCCCHHHHHHHHHcCeEEEEecC
Confidence 35789999999999999999999999999985 255554 55666788999999999999997543
No 70
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=98.18 E-value=4.8e-06 Score=46.53 Aligned_cols=44 Identities=30% Similarity=0.528 Sum_probs=39.1
Q ss_pred EEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCC
Q 033762 23 MIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 75 (112)
Q Consensus 23 ~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf 75 (112)
++|+|++||+|+|+.+++.+++++. ..++. .|..+..++.++||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~-~~g~~--------~~~~~~~~~~~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWAR-KRGIS--------LNRLALEVYEKNGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHH-HcCce--------ehHHHHHHHHhcCC
Confidence 8889999999999999999999987 44544 78899999999998
No 71
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=98.15 E-value=4.9e-05 Score=44.78 Aligned_cols=71 Identities=15% Similarity=0.191 Sum_probs=49.2
Q ss_pred eEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCC----ccHHHHHHHHhCCCee
Q 033762 2 VGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGE----SNGASLRLFQKLGFED 77 (112)
Q Consensus 2 vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~----~n~~s~~~y~~~Gf~~ 77 (112)
+|.+-+.... +.++++.++|.+.=|++|+|..|++.+...+ .+++.+.+.... .-..+..|.+.+||..
T Consensus 50 LgAv~v~~~~----~~~~L~~l~VRevTRrRGVG~yLlee~~rq~---p~i~~w~l~~~~~~~~~~~~~~~Fm~a~GF~~ 122 (128)
T PF12568_consen 50 LGAVKVTISG----QQAELSDLCVREVTRRRGVGLYLLEEVLRQL---PDIKHWWLADEGVEPQDRAVMAAFMQACGFSA 122 (128)
T ss_dssp EEEEEEEEET----TEEEEEEEEE-TT-SSSSHHHHHHHHHHHHS----S--EEEE--TT-S--THHHHHHHHHHHT-EE
T ss_pred eeeEEEEEcC----cceEEeeEEEeeccccccHHHHHHHHHHHHC---CCCcEEEEecCCCcccchHHHHHHHHHcCccc
Confidence 5666666555 6789999999999999999999999998875 366777665553 3356678999999976
Q ss_pred ec
Q 033762 78 IS 79 (112)
Q Consensus 78 ~~ 79 (112)
.+
T Consensus 123 ~~ 124 (128)
T PF12568_consen 123 QS 124 (128)
T ss_dssp -S
T ss_pred cC
Confidence 54
No 72
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=98.00 E-value=1.8e-05 Score=53.86 Aligned_cols=58 Identities=19% Similarity=0.210 Sum_probs=48.8
Q ss_pred CeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeec
Q 033762 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (112)
Q Consensus 16 ~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~ 79 (112)
.++.|..++++|+|||+|..++|+...+.... +.|+....++. .+.+||+|.||..-.
T Consensus 69 ~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~-~kG~p~s~L~P-----~s~~iYrKfGye~as 126 (389)
T COG4552 69 PTAGIAGVASAPTYRRRGALRALLAHSLREIA-RKGYPVSALHP-----FSGGIYRKFGYEYAS 126 (389)
T ss_pred eccceEEEEechhhccCcHHHHHHHHHHHHHH-HcCCeeEEecc-----CchhhHhhccccccc
Confidence 46789999999999999999999999999876 55887665543 456799999999876
No 73
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=97.94 E-value=3.7e-05 Score=43.54 Aligned_cols=38 Identities=21% Similarity=0.333 Sum_probs=33.3
Q ss_pred CeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccE
Q 033762 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHV 54 (112)
Q Consensus 16 ~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~ 54 (112)
+...|....|++++||||+|++|+..+++.++ +.|.+.
T Consensus 38 ~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar-~~g~ki 75 (99)
T COG2388 38 NLIIIDHTYVPDELRGQGIAQKLVEKALEEAR-EAGLKI 75 (99)
T ss_pred CEEEEecCcCCHHHcCCcHHHHHHHHHHHHHH-HcCCeE
Confidence 67889999999999999999999999999998 446543
No 74
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=97.92 E-value=7.5e-05 Score=49.79 Aligned_cols=59 Identities=20% Similarity=0.281 Sum_probs=52.9
Q ss_pred EEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeeccc
Q 033762 19 EVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYS 81 (112)
Q Consensus 19 ~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~~ 81 (112)
-|.++++++.+||-|++-+++.++++.+. +.|..++.+.+.+.+ ..+|..+||......
T Consensus 58 vikcvAvs~s~qGeGl~lkl~TeLin~ay-~~g~~hLFiyTKp~~---~~lFk~~GF~~i~~~ 116 (352)
T COG3053 58 VIKCVAVSESLQGEGLALKLVTELINLAY-ERGRTHLFIYTKPEY---AALFKQCGFSEIASA 116 (352)
T ss_pred eeEEEEechhcccccHHHHHHHHHHHHHH-HcCCceEEEEechhH---HHHHHhCCceEeecc
Confidence 57899999999999999999999999998 679999999998876 459999999988743
No 75
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=97.80 E-value=0.00015 Score=42.19 Aligned_cols=71 Identities=14% Similarity=0.099 Sum_probs=47.7
Q ss_pred CeEEEEEEeecCCC-CCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCe
Q 033762 1 MVGDVNIYMNDLDN-LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 76 (112)
Q Consensus 1 ~vG~~~~~~~~~~~-~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~ 76 (112)
+||++.+....... ....-+.-+.+-..|||+|+|++++.++..... ....+.+.++|++|+.|+.+.-..
T Consensus 48 ~igf~l~L~~~~~~~~iD~~~~efFIi~k~~~~GvGR~aaK~If~~~~-----g~w~Va~i~EN~PA~~fwK~~~~t 119 (143)
T COG5628 48 PVGFALVLDLAHSPTPIDRAVAEFFIVRKHRRRGVGRAAAKAIFGSAW-----GVWQVATVRENTPARAFWKRVAET 119 (143)
T ss_pred eeeeeeeecccCCCCcccccchheEeeehhhccchhHHHHHHHHHHhh-----ceEEEEEeccCChhHHHHHhhhcc
Confidence 46777665432211 122233334444899999999999998876543 345567889999999999987554
No 76
>PF11039 DUF2824: Protein of unknown function (DUF2824); InterPro: IPR022568 This family of proteins has no known function. Members of the family are found in P22-like viruses and bacteria. Some of the phage members have been annotated as head assembly proteins, but this has not been confirmed.
Probab=97.48 E-value=0.0031 Score=37.36 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=61.5
Q ss_pred eEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeeccc
Q 033762 2 VGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYS 81 (112)
Q Consensus 2 vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~~ 81 (112)
.|.+.+....+ ...+.+-++ +|++|| ++.+.-.....|+.++..+..+...+...-+-.+-..+-+|.+++|..
T Consensus 50 ~Gi~~v~~i~~---~~vecHa~y-~P~fRG--~a~~~~~~F~kwlL~Ns~f~~vit~vp~kt~~Grvic~llg~~RVG~i 123 (151)
T PF11039_consen 50 GGIVYVEEIQP---SVVECHAMY-DPGFRG--YALEIGRLFCKWLLENSPFQNVITFVPDKTRYGRVICRLLGARRVGHI 123 (151)
T ss_pred EEEEEEEEEee---eeEEEEeee-ccccch--hHHHHHHHHHHHHhcCCceeEEEEecccccccchhHhhhhCCceeeeH
Confidence 34444444433 467777777 699998 899999999999998888888888888888888889999999999976
Q ss_pred ccee
Q 033762 82 EIFK 85 (112)
Q Consensus 82 ~~~~ 85 (112)
.++-
T Consensus 124 d~~~ 127 (151)
T PF11039_consen 124 DDYF 127 (151)
T ss_pred HHHh
Confidence 5443
No 77
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=97.26 E-value=0.001 Score=35.26 Aligned_cols=29 Identities=17% Similarity=0.249 Sum_probs=25.8
Q ss_pred eEEEEEEEeCcccccCcHHHHHHHHHHHH
Q 033762 17 LAEVEIMIAEPKSRGKGLAKDAVLMMMAY 45 (112)
Q Consensus 17 ~~~i~~~~v~~~~rg~Gig~~l~~~~~~~ 45 (112)
.+-|+.+.|+|.+|++|||++|++.+.+.
T Consensus 5 ~~GI~RIWV~~~~RR~GIAt~Lld~ar~~ 33 (70)
T PF13880_consen 5 VCGISRIWVSPSHRRKGIATRLLDAAREN 33 (70)
T ss_pred EEEeEEEEeChhhhhhhHHHHHHHHHHHh
Confidence 46788899999999999999999988775
No 78
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.10 E-value=0.00051 Score=48.88 Aligned_cols=76 Identities=12% Similarity=0.208 Sum_probs=60.3
Q ss_pred EEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCc--cHHHHHHHHhCCCeeecc
Q 033762 3 GDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES--NGASLRLFQKLGFEDISY 80 (112)
Q Consensus 3 G~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~--n~~s~~~y~~~Gf~~~~~ 80 (112)
|.|++....... +.+.|+-++.+...-|+++-++++..+++.|. ..|+..+.+...|+ |...-.||+++||+..++
T Consensus 473 Giigvviv~kk~-~~w~IDt~lmSCRVlgRkvE~~l~~~~~e~A~-~~gi~tir~~Y~pt~kN~pv~~FyE~mgf~l~~e 550 (574)
T COG3882 473 GIIGVVIVEKKE-SEWFIDTFLMSCRVLGRKVEQRLMNSLEEQAL-SEGINTIRGYYIPTEKNAPVSDFYERMGFKLKGE 550 (574)
T ss_pred ceEEEEEEEecC-CeEEhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcceeeeEecccccCCcHHHHHHHhccccccc
Confidence 344444444433 56777777777778899999999999999998 67999998887765 889999999999997664
No 79
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=96.80 E-value=0.012 Score=33.40 Aligned_cols=58 Identities=5% Similarity=0.038 Sum_probs=43.0
Q ss_pred EEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHH
Q 033762 3 GDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASL 67 (112)
Q Consensus 3 G~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~ 67 (112)
|++.+.+..+. ...++++.++|.|..|++|++..+...+.+. .+.+...+.++|+...
T Consensus 21 ~~aIvt~~~~~-~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d------~~~L~Wrsr~~n~~n~ 78 (99)
T cd04264 21 AAAIVTYEGVN-NGVPYLDKFAVSSSAQGEGTSDALWRRLRRD------FPKLFWRSRKTNPINP 78 (99)
T ss_pred EEEEEeccCCC-CCceEEEEEEEchhhhhcChHHHHHHHHHhh------CCceEEEeCCCCcccc
Confidence 44544443322 3678999999999999999999998877543 3678888888887543
No 80
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=96.78 E-value=0.031 Score=35.20 Aligned_cols=61 Identities=21% Similarity=0.208 Sum_probs=40.7
Q ss_pred CCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHH-hCCCeeecc
Q 033762 15 LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQ-KLGFEDISY 80 (112)
Q Consensus 15 ~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~-~~Gf~~~~~ 80 (112)
.....+++..++|+|||+|+++.+-+.+.+... . .-....+ ..|..+.++|. -+||...+.
T Consensus 76 ~pl~~~G~~w~~p~yRg~~~~kl~~~~~~~~~~-~-~~~N~~~---~~~~~~~~~w~k~~G~~~~~h 137 (181)
T PF06852_consen 76 KPLQFIGFFWIDPEYRGKGIMKLQDDICMDELD-S-VDDNSVA---QGNVKMSNFWHKMFGFDDYGH 137 (181)
T ss_pred CCeEEEeeeeeCCcccCcchHHHHHHHHHHHhc-c-CCCceee---ecCHHHHHHHHHHhCCCCCcc
Confidence 357899999999999999999644444444432 2 2233323 24556666776 589888775
No 81
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=96.70 E-value=0.025 Score=37.18 Aligned_cols=61 Identities=21% Similarity=0.276 Sum_probs=49.9
Q ss_pred CCeEEEEEEEeCcccccC--------c--------------------HHHHHHHHHHHHHHHhcCccEEEEEeCCccHHH
Q 033762 15 LELAEVEIMIAEPKSRGK--------G--------------------LAKDAVLMMMAYAVENFGIHVFRAKIGESNGAS 66 (112)
Q Consensus 15 ~~~~~i~~~~v~~~~rg~--------G--------------------ig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s 66 (112)
++.+|++.++|++++|++ | +...|+..+.+++. ..|++.+++.+.+ ..
T Consensus 109 ~~i~E~SRf~V~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~-~~Gi~~~~~v~~~---~l 184 (241)
T TIGR03694 109 SRIAEVSRLAVSKDFRRRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALSS-ANGITHWYAIMEP---RL 184 (241)
T ss_pred CceEEeehheECHhHhCCcccccccccccccccccccchhhcccCchHHHHHHHHHHHHHH-HCCCcEEEEEeCH---HH
Confidence 468999999999999974 1 55679999999997 7799999887766 57
Q ss_pred HHHHHhCCCeeec
Q 033762 67 LRLFQKLGFEDIS 79 (112)
Q Consensus 67 ~~~y~~~Gf~~~~ 79 (112)
.+++.++|+....
T Consensus 185 ~r~l~r~G~~~~~ 197 (241)
T TIGR03694 185 ARLLSRFGIQFRQ 197 (241)
T ss_pred HHHHHHhCCceEE
Confidence 7799999986643
No 82
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=96.64 E-value=0.003 Score=44.80 Aligned_cols=50 Identities=20% Similarity=0.214 Sum_probs=41.3
Q ss_pred CcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeec
Q 033762 26 EPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (112)
Q Consensus 26 ~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~ 79 (112)
...+|.+|+|++|++.++..|.+. +..+|... +-..++..|+|+||...|
T Consensus 459 ~~~~QH~G~G~~L~~~AE~ia~ee-~~~ki~vi---SgiG~ReYy~k~GY~~~g 508 (515)
T COG1243 459 EDEWQHRGYGRELLEEAERIAREE-GAKKILVI---SGIGVREYYRKLGYELDG 508 (515)
T ss_pred cchhhcccHHHHHHHHHHHHHHhh-ccccEEEE---ecccHHHHHHHhCccccC
Confidence 468999999999999999999855 57766433 345789999999999988
No 83
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=96.52 E-value=0.015 Score=36.74 Aligned_cols=45 Identities=9% Similarity=0.208 Sum_probs=32.9
Q ss_pred EEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHh
Q 033762 5 VNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVEN 49 (112)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~ 49 (112)
++++.........-.++++++-|.||++|+|+-|++..-+.++.+
T Consensus 68 vGyFSKEk~s~~~~NLsCIl~lP~yQrkGyG~~LI~fSY~LSr~e 112 (188)
T PF01853_consen 68 VGYFSKEKESWDNNNLSCILTLPPYQRKGYGRFLIDFSYELSRRE 112 (188)
T ss_dssp EEEEEEESS-TT-EEESEEEE-GGGTTSSHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEecccCCeeEeehhhcchhhhcchhhhhhhhHHHHhhcc
Confidence 455554444335578999999999999999999999988877644
No 84
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=96.43 E-value=0.0083 Score=41.40 Aligned_cols=50 Identities=20% Similarity=0.183 Sum_probs=41.4
Q ss_pred cccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeec
Q 033762 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (112)
Q Consensus 27 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~ 79 (112)
.+||.||+|+.|+++++..|+++.|-.++....- ......|+|+||+..|
T Consensus 497 ~KfQHQG~GtLLmeEAERIAr~EHgS~KiavISG---VGtR~YY~klGY~LdG 546 (554)
T KOG2535|consen 497 TKFQHQGFGTLLMEEAERIAREEHGSGKIAVISG---VGTRNYYRKLGYELDG 546 (554)
T ss_pred hhhhhcchhhHHHHHHHHHHHHhcCCCceEEEec---cchHHHHHhhCeeecC
Confidence 4799999999999999999998888877754333 3456799999999988
No 85
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=96.32 E-value=0.0088 Score=33.95 Aligned_cols=48 Identities=6% Similarity=0.024 Sum_probs=38.5
Q ss_pred CeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHH
Q 033762 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRL 69 (112)
Q Consensus 16 ~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~ 69 (112)
..++|+.++|.+..||+|++..+...+.+. .+.+...+.++|+...-+
T Consensus 33 ~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d------~~~L~Wrsr~~n~~n~Wy 80 (99)
T cd04265 33 GVPYLDKFAVSSSAQGEGTGEALWRRLRRD------FPKLFWRSRSTNPINPWY 80 (99)
T ss_pred CceEEEEEEEchhhhhcChHHHHHHHHHhh------CCceEEEeCCCCcccceE
Confidence 678999999999999999999998887553 246888888888654333
No 86
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=96.31 E-value=0.058 Score=33.97 Aligned_cols=62 Identities=18% Similarity=0.317 Sum_probs=47.3
Q ss_pred CCeEEEEEEEeCccccc------CcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 15 LELAEVEIMIAEPKSRG------KGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 15 ~~~~~i~~~~v~~~~rg------~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
.+.+|++.++++++..+ .-+...|+..+++++. ..|++.+.+.+ +....++++++||....-
T Consensus 88 ~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~e~a~-~~gi~~~v~V~---~~~~~r~l~r~G~~~~~l 155 (182)
T PF00765_consen 88 PDVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMVEFAL-SNGIRHIVGVV---DPAMERILRRAGWPVRRL 155 (182)
T ss_dssp TTEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHHHHHH-CTT-SEEEEEE---EHHHHHHHHHCT-EEEES
T ss_pred CcceeeeEEEEcccccccccccccHHHHHHHHHHHHHHH-HCCCCEEEEEE---ChHHHHHHHHcCCceEEC
Confidence 37899999999887432 2467789999999997 77999997766 457899999999988753
No 87
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=96.26 E-value=0.085 Score=33.90 Aligned_cols=61 Identities=8% Similarity=0.080 Sum_probs=48.4
Q ss_pred CCeEEEEEEEeCcccccC---c----HHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeec
Q 033762 15 LELAEVEIMIAEPKSRGK---G----LAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (112)
Q Consensus 15 ~~~~~i~~~~v~~~~rg~---G----ig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~ 79 (112)
++.+|++.++++++++.. + +...|+..+.+++. ..|++.+++.+.+ ...+++.++|+....
T Consensus 97 ~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~-~~Gi~~~~~v~~~---~~~r~l~r~G~~~~~ 164 (207)
T PRK13834 97 PAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSM-ANGYTEIVTATDL---RFERILARAGWPMQR 164 (207)
T ss_pred CCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHH-HCCCCEEEEEECH---HHHHHHHHcCCCeEE
Confidence 478999999999885322 2 55689999999997 6799999877755 577899999987754
No 88
>PHA00771 head assembly protein
Probab=96.23 E-value=0.11 Score=30.79 Aligned_cols=84 Identities=15% Similarity=0.183 Sum_probs=60.1
Q ss_pred eEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeeccccceeccceeeecchh
Q 033762 17 LAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIFKEVTLELPVENA 96 (112)
Q Consensus 17 ~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~~~~~~~~~~~~~~~~~ 96 (112)
..+.+-++ +|++||+- + +.-....+|+.++..+.++...+...-+-.+-..+-+|.+++|...++-.-.....+=..
T Consensus 62 ~~ecHa~y-~P~fRG~y-a-~~~r~F~kwlL~Nt~f~~vit~vp~kt~~G~vic~lig~rRVG~id~a~~g~~~vT~Yq~ 138 (151)
T PHA00771 62 TFDCHAMY-LPEIRGFS-K-EIGLAFWRYILTNTTVQCVTSFAARKFRHGQMYCAMIGLKRVGTIKKYFKGVDDVTFYSA 138 (151)
T ss_pred EEEEEeee-Cccccchh-H-HHHHHHHHHHhcCCceeEEEEecccccccchhhhhhhCCceeeeHHHHhcCCCceEEEEc
Confidence 45666666 69999873 4 888888899888888888888888777788888999999999986654433333444344
Q ss_pred hHHHHHH
Q 033762 97 KREELLV 103 (112)
Q Consensus 97 ~~~~~~~ 103 (112)
..+++..
T Consensus 139 TR~~~~~ 145 (151)
T PHA00771 139 TREELID 145 (151)
T ss_pred CHHHHHH
Confidence 4444433
No 89
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=95.64 E-value=0.17 Score=29.66 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=34.6
Q ss_pred EEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhC
Q 033762 21 EIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKL 73 (112)
Q Consensus 21 ~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~ 73 (112)
--++|++..|++|+|++|.+.++.. + +...-.+.++.-......|.+|.
T Consensus 50 LDFyVhes~QR~G~Gk~LF~~ML~~--e--~~~p~~~a~DrPS~Kll~Fl~Kh 98 (120)
T PF05301_consen 50 LDFYVHESRQRRGYGKRLFDHMLQE--E--NVSPHQLAIDRPSPKLLSFLKKH 98 (120)
T ss_pred eeEEEEeceeccCchHHHHHHHHHH--c--CCCcccceecCCcHHHHHHHHHh
Confidence 4455679999999999999998774 2 44444555666566677777653
No 90
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=95.54 E-value=0.17 Score=29.57 Aligned_cols=53 Identities=11% Similarity=-0.017 Sum_probs=40.7
Q ss_pred eEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEe
Q 033762 2 VGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKI 59 (112)
Q Consensus 2 vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~ 59 (112)
||+....... +..+......+|+++..+.|..++..++.++. ..|++.+-...
T Consensus 83 va~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~-~~g~~~~d~g~ 135 (142)
T PF13480_consen 83 VAFALGFRHG----GTLYYWYGGYDPEYRKYSPGRLLLWEAIRWAI-ERGLRYFDFGG 135 (142)
T ss_pred EEEEEEEEEC----CEEEEEEEEECHhhHhCCHHHHHHHHHHHHHH-HCCCCEEEECC
Confidence 4455444444 56778888889999999999999999999998 55887775543
No 91
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=95.44 E-value=0.013 Score=40.96 Aligned_cols=45 Identities=16% Similarity=0.218 Sum_probs=36.0
Q ss_pred eEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHH
Q 033762 2 VGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYA 46 (112)
Q Consensus 2 vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~ 46 (112)
.|++|++..+....+...+.++.+-|-||++|+|+-|++.--+.-
T Consensus 245 ~G~VGYFSKEK~s~~~yNlaCILtLPpyQRkGYGklLIdFSYeLS 289 (396)
T KOG2747|consen 245 YGCVGYFSKEKESSENYNLACILTLPPYQRKGYGKLLIDFSYELS 289 (396)
T ss_pred cceeeeeccccccccccceeeeeecChhhhcccchhhhhhhhhhh
Confidence 367777776665545677999999999999999999998776654
No 92
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=95.18 E-value=0.051 Score=36.51 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=32.1
Q ss_pred EEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHH
Q 033762 5 VNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVE 48 (112)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~ 48 (112)
+|++..+......-.++++++-|-||++|+|+-|++..-+..+.
T Consensus 143 vGYFSKEK~s~~~nNLaCIltLPpyQrkGyG~~LI~fSYeLSr~ 186 (290)
T PLN03238 143 VGYFSKEKVSAEDYNLACILTLPPYQRKGYGKFLISFAYELSKR 186 (290)
T ss_pred EEEeceeccccCCCcEEEEEecChhhhccHhHhHHHHHhHHhhc
Confidence 34444333222335799999999999999999999988877653
No 93
>COG3375 Uncharacterized conserved protein [Function unknown]
Probab=95.18 E-value=0.16 Score=33.10 Aligned_cols=67 Identities=18% Similarity=0.221 Sum_probs=53.0
Q ss_pred eEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHH-HhCCCeeeccccce
Q 033762 17 LAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLF-QKLGFEDISYSEIF 84 (112)
Q Consensus 17 ~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y-~~~Gf~~~~~~~~~ 84 (112)
..+=++..|.|++++.|+|-+|-..--+++. ..|+..+..+.+|-|....+|- .|+|-.-.-....|
T Consensus 74 y~ySH~~gV~e~~k~sglg~aLK~~Qre~a~-~~G~tli~WTfDPl~alNA~fNi~KLGa~artYi~nf 141 (266)
T COG3375 74 YLYSHMLGVREEVKGSGLGVALKMKQRERAL-SMGYTLIAWTFDPLNALNARFNISKLGAIARTYIKNF 141 (266)
T ss_pred eeeeeehhccccccccchhhhhHHHHHHHHH-hcCeeeEEEecccchhhhhhcchhhhceeEEEeeccc
Confidence 4566778889999999999999999999987 6799999999999998766663 47776554433333
No 94
>PLN03239 histone acetyltransferase; Provisional
Probab=94.72 E-value=0.064 Score=36.98 Aligned_cols=44 Identities=11% Similarity=0.134 Sum_probs=32.3
Q ss_pred EEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHH
Q 033762 5 VNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVE 48 (112)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~ 48 (112)
+|++..+........+.++++-|-||++|+|+-|++..-+..+.
T Consensus 201 vGYFSKEK~s~~~~NLaCIltLPpyQrkGyG~lLI~fSYeLSr~ 244 (351)
T PLN03239 201 VGYYSKEKYSDVGYNLACILTFPAHQRKGYGRFLIAFSYELSKK 244 (351)
T ss_pred EEEeeecccCCCCCceEEEEecChhhhcchhhhhHhhhhHhhhh
Confidence 44444443322335799999999999999999999988777653
No 95
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=94.27 E-value=0.059 Score=38.52 Aligned_cols=62 Identities=21% Similarity=0.377 Sum_probs=44.3
Q ss_pred eEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEe-CCcc----HHHHHHHHhCCCeeec
Q 033762 17 LAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKI-GESN----GASLRLFQKLGFEDIS 79 (112)
Q Consensus 17 ~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~-~~~n----~~s~~~y~~~Gf~~~~ 79 (112)
.+.|..++|+|+||+-|+|...+..+.+|..+. -++.+.-.- ...- ..=..|+++.||+..-
T Consensus 241 aariarvvvhpdyr~dglg~~sv~~a~ewI~eR-riPEmr~rkHlvetiaqmarynpffe~~gfkylw 307 (593)
T COG2401 241 AARIARVVVHPDYRADGLGQLSVIAALEWIIER-RIPEMRPRKHLVETIAQMARYNPFFEKVGFKYLW 307 (593)
T ss_pred hhheeEEEeccccccCccchhHHHHHHHHHHHh-hChhhhhhhhHHHHHHHHHhcCchhhhhceeeee
Confidence 478999999999999999999999999999754 444433220 0000 1113589999999764
No 96
>PTZ00064 histone acetyltransferase; Provisional
Probab=93.87 E-value=0.099 Score=37.78 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=31.8
Q ss_pred EEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHH
Q 033762 5 VNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAV 47 (112)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~ 47 (112)
++++..+........+.++++-|-||++|+|+-|++..-+..+
T Consensus 372 VGYFSKEK~S~~~nNLACILtLPpyQRKGYGklLIdfSYeLSr 414 (552)
T PTZ00064 372 VGYFSKEKVSLLHYNLACILTLPCYQRKGYGKLLVDLSYKLSL 414 (552)
T ss_pred EEEecccccCcccCceEEEEecchhhhcchhhhhhhhhhhhhh
Confidence 3444433332234579999999999999999999998877665
No 97
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=93.73 E-value=0.078 Score=40.00 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=28.3
Q ss_pred eEEEEEEEeCcccccCcHHHHHHHHHHHHHH
Q 033762 17 LAEVEIMIAEPKSRGKGLAKDAVLMMMAYAV 47 (112)
Q Consensus 17 ~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~ 47 (112)
-+.|..++|+|+|++.|+|++.++.+.++..
T Consensus 614 GaRIVRIAvhP~y~~MGYGsrAvqLL~~y~e 644 (1011)
T KOG2036|consen 614 GARIVRIAVHPEYQKMGYGSRAVQLLTDYFE 644 (1011)
T ss_pred CceEEEEEeccchhccCccHHHHHHHHHHHh
Confidence 4789999999999999999999999998854
No 98
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=93.66 E-value=0.36 Score=26.65 Aligned_cols=29 Identities=17% Similarity=0.143 Sum_probs=25.7
Q ss_pred CccEEEEEeCCccHHHHHHHHhCCCeeec
Q 033762 51 GIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (112)
Q Consensus 51 ~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~ 79 (112)
.+..++-.|...|+.+++|.+.+|++...
T Consensus 55 ~Y~~l~N~V~~~N~~HIRfLk~lGA~f~~ 83 (86)
T PF11090_consen 55 QYPVLWNFVWVGNKSHIRFLKSLGAVFHN 83 (86)
T ss_pred HhhheeEEEEeCCHHHHHHHHhcCcEEcc
Confidence 46779999999999999999999998654
No 99
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=93.34 E-value=0.078 Score=37.82 Aligned_cols=43 Identities=14% Similarity=0.184 Sum_probs=31.3
Q ss_pred EEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHH
Q 033762 5 VNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAV 47 (112)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~ 47 (112)
++++...........+.++++-|-||++|+|+-|++..-+..+
T Consensus 294 vGyFSKEk~s~~~~NLaCIltlP~yQrkGyG~~LI~~SYeLSr 336 (450)
T PLN00104 294 VGYFSKEKHSEEDYNLACILTLPPYQRKGYGKFLIAFSYELSK 336 (450)
T ss_pred EEEecccccCcCCCceEEEEecchhhhcchhheehhheehhhh
Confidence 3444433333233579999999999999999999988776654
No 100
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=93.25 E-value=0.3 Score=32.42 Aligned_cols=48 Identities=19% Similarity=0.154 Sum_probs=40.5
Q ss_pred cHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeeccccce
Q 033762 33 GLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIF 84 (112)
Q Consensus 33 Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~~~~~ 84 (112)
+-...++..+.+.|. ..|+.+|.+.+..++ ..+|++.||..++..+.|
T Consensus 21 ~~~~~~~~~~~~~a~-~~~~~ki~~~~~~~~---~~~~~~~g~~~e~~i~~~ 68 (266)
T TIGR03827 21 NDVEALIPDLDALAK-KEGYTKIIAKVPGSD---KPLFEERGYLEEAKIPGY 68 (266)
T ss_pred ccHHHHHHHHHHHHH-HcCCcEEEEEccHHH---HHHHHHCCCeEEEecccc
Confidence 347889999999987 669999999998775 679999999999877655
No 101
>KOG2696 consensus Histone acetyltransferase type b catalytic subunit [Chromatin structure and dynamics]
Probab=92.55 E-value=0.5 Score=33.02 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=34.0
Q ss_pred CeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHH
Q 033762 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGA 65 (112)
Q Consensus 16 ~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~ 65 (112)
-...|+-+.+.|.||++|+|+.+++.+....... -+.+-.++...+++
T Consensus 216 ~R~RiSQmlilpPfq~~Glgs~l~E~i~r~~~~~--p~v~DiTVEdPse~ 263 (403)
T KOG2696|consen 216 IRPRISQMLILPPFQGKGLGSQLYEAIARDYLEE--PTVLDITVEDPSEA 263 (403)
T ss_pred hhhhhheeEEeccccCCchHHHHHHHHHHhhccC--CceeEEEecCchHH
Confidence 3467888888899999999999999999554333 34445555544443
No 102
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=92.41 E-value=0.4 Score=30.05 Aligned_cols=54 Identities=17% Similarity=0.222 Sum_probs=43.1
Q ss_pred CeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCC
Q 033762 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLG 74 (112)
Q Consensus 16 ~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~G 74 (112)
-.++++.+.|.|+.+|.||+..+ ..+...+. ++++.--..+|.. +..+.+++++
T Consensus 84 LVaElGLygVRpDLEGlGi~hs~-r~m~PvLq-~LgVPF~FGtVR~---al~~Hv~R~~ 137 (196)
T PF02474_consen 84 LVAELGLYGVRPDLEGLGISHSM-RVMYPVLQ-ELGVPFGFGTVRH---ALRNHVERLC 137 (196)
T ss_pred eEEEEEEEEeeccccccccchhh-hhhhhHHH-hcCCCeecccchH---HHHHHHHHHh
Confidence 46899999999999999999976 56666554 8899988887754 5667777776
No 103
>PHA01733 hypothetical protein
Probab=92.00 E-value=0.28 Score=30.00 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 35 AKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
-+..++.+-.++.+...+..+.-.|...|..+++|.+.+||+....
T Consensus 87 ~~~f~re~r~~l~e~~~Yp~LwNyV~~~N~~hir~Lk~lGF~f~~~ 132 (153)
T PHA01733 87 PIALLRGAKWWLPKSRNYDLLWNIVDKRNLVHRKLLRKLGFKGLRY 132 (153)
T ss_pred CHHHHHHHHHHHHHhccccHHHHhHhcccHHHHHHHHHcCceeecc
Confidence 3444444444443344778889999999999999999999998874
No 104
>PHA00432 internal virion protein A
Probab=91.99 E-value=0.43 Score=28.69 Aligned_cols=30 Identities=10% Similarity=0.060 Sum_probs=27.6
Q ss_pred CccEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 51 GIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 51 ~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
.++.+.-.|...|..+++|.+.+||+...+
T Consensus 92 ~yp~LwNyV~~~N~~hir~Lk~lGf~f~~e 121 (137)
T PHA00432 92 QYPSLWNYVWVGNKSHIRFLKSIGAVFHNE 121 (137)
T ss_pred hhhhhheeeecCCHHHHHHHHHcCeeeecc
Confidence 578899999999999999999999998874
No 105
>PF04768 DUF619: Protein of unknown function (DUF619); InterPro: IPR006855 This region of unknown function is found at the C terminus of Neurospora crassa acetylglutamate synthase (2.7.2.8 from EC). It is also found C-terminal to the amino acid kinase region in some fungal acetylglutamate kinase enzymes (IPR001048 from INTERPRO). These enzymes play a role in arginine biosynthesis.; PDB: 3S6K_A 4AB7_F 3ZZF_B 3ZZI_D 3ZZH_A 3ZZG_A 3S6G_Y 3S6H_A 3S7Y_A.
Probab=91.89 E-value=1.8 Score=27.04 Aligned_cols=68 Identities=13% Similarity=0.119 Sum_probs=45.1
Q ss_pred EEEEEEeec-CCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhC-CCe
Q 033762 3 GDVNIYMND-LDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKL-GFE 76 (112)
Q Consensus 3 G~~~~~~~~-~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~-Gf~ 76 (112)
|.+.+.+.. ......+++..+++.+..||.|++..+...+.+. .+.+...+.++|+...-++++. |+-
T Consensus 73 ~~AIVt~e~~~~~~~v~yLdKFav~~~~~g~gv~D~vf~~i~~d------~p~L~Wrsr~~n~~~~Wyf~rs~G~~ 142 (170)
T PF04768_consen 73 GAAIVTPEGPDSNGPVPYLDKFAVSKSAQGSGVADNVFNAIRKD------FPKLFWRSREDNPNNKWYFERSDGSF 142 (170)
T ss_dssp EEEEEEEE-SCTCTSEEEEEEEEE-HHHHHTTHHHHHHHHHHHH-------SSEEEEEETT-TTHHHHHHH-SEEE
T ss_pred EEEEEEecCCCCCCCCeEEEEEEecchhhhcCHHHHHHHHHHHh------ccceEEEecCCCCcccEEEEeeEEEE
Confidence 344444422 2333689999999999999999999998888442 2348888888887766666654 443
No 106
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=91.80 E-value=1.1 Score=27.69 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=36.7
Q ss_pred CeEEEEEEeecC----CCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCc
Q 033762 1 MVGDVNIYMNDL----DNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGI 52 (112)
Q Consensus 1 ~vG~~~~~~~~~----~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~ 52 (112)
+||+++--+..- .....++|..++++++.|.++++--|++++-..+. ..|+
T Consensus 90 LvgfIsaip~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn-~~gI 144 (162)
T PF01233_consen 90 LVGFISAIPATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVN-LQGI 144 (162)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHH-TTT-
T ss_pred EEEEEccceEEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhh-hcCc
Confidence 467776544321 11257899999999999999999999999988875 3344
No 107
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=91.71 E-value=0.95 Score=26.94 Aligned_cols=38 Identities=13% Similarity=0.211 Sum_probs=30.9
Q ss_pred EEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeC
Q 033762 22 IMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIG 60 (112)
Q Consensus 22 ~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~ 60 (112)
+..-||++...++|+-.+-.-+++|+ +.|.+-+++-.-
T Consensus 67 Y~fyDPd~~~~SlG~~~iL~eI~~a~-~~~l~y~YLGY~ 104 (128)
T PF04377_consen 67 YTFYDPDYSKRSLGTYSILREIELAR-ELGLPYYYLGYW 104 (128)
T ss_pred eeeeCCCccccCcHHHHHHHHHHHHH-HcCCCEEeeCeE
Confidence 34448999999999999999999997 678888876443
No 108
>PRK14852 hypothetical protein; Provisional
Probab=91.39 E-value=1.1 Score=35.27 Aligned_cols=69 Identities=12% Similarity=0.158 Sum_probs=57.2
Q ss_pred CeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHH-hCCCeeeccccceeccc
Q 033762 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQ-KLGFEDISYSEIFKEVT 88 (112)
Q Consensus 16 ~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~-~~Gf~~~~~~~~~~~~~ 88 (112)
..++++.+++|++.+.+-+--.+++.+..++. ..++..+.++|.|... .||+ -+||+..++...|..+.
T Consensus 120 ~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~-~~~~dd~~i~VnPkH~---~FY~r~l~f~~ig~~r~~p~Vn 189 (989)
T PRK14852 120 NVVEVGALATQYSRRWTNLMVFLAKAMFQYSM-MSEVDDILVTVNPKHV---KFYTDIFLFKPFGEVRHYDTVD 189 (989)
T ss_pred eEEeeehheechhhcccchhHHHHHHHHHHHH-HcCCCeEEEEECcchH---HHHHHHhCCccccccccCCCCC
Confidence 56899999999988888777788888877775 5699999999988774 5999 68999999887777765
No 109
>cd04266 DUF619-NAGS-FABP DUF619 domain of N-acetylglutamate Synthase of the fungal arginine-biosynthetic pathway. DUF619-NAGS-FABP: This family includes the DUF619 domain of N-acetylglutamate synthase (NAGS) of the fungal arginine-biosynthetic pathway (FABP). This NAGS (also known as arginine-requiring protein 2 or ARG2) consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. NAGS catalyzes the formation of NAG from acetylcoenzyme A and L-glutamate. The DUF619 domain, yet to be characterized, is predicted to function in NAGS association in fungi.
Probab=90.12 E-value=1.2 Score=25.73 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=38.2
Q ss_pred CeEEEEEEEeCccccc-CcHHHHHHHHHHHHHHHhcCccE-EEEEeCCccHHHHHHHH
Q 033762 16 ELAEVEIMIAEPKSRG-KGLAKDAVLMMMAYAVENFGIHV-FRAKIGESNGASLRLFQ 71 (112)
Q Consensus 16 ~~~~i~~~~v~~~~rg-~Gig~~l~~~~~~~~~~~~~~~~-l~~~~~~~n~~s~~~y~ 71 (112)
..+++..+++.+..|| .|++.-+...+.+ ..+. +...+.++|+...-+++
T Consensus 38 ~v~yLdKFav~~~~~gl~gv~D~vf~~m~~------~fp~~L~Wrsr~~n~~n~Wyfe 89 (108)
T cd04266 38 KIAYLDKFAVLPKAQGSDGIADILFNAMLD------GFPNELIWRSRKDNPVNKWYFE 89 (108)
T ss_pred CceEEEEEEEccccccccchHHHHHHHHHH------cCCCceEEEeCCCCcccceEEe
Confidence 6789999999999997 8999988887755 2344 88888888875444443
No 110
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=89.57 E-value=4.1 Score=26.37 Aligned_cols=61 Identities=16% Similarity=0.174 Sum_probs=46.4
Q ss_pred CCeEEEEEEEeCc--cc---ccCcH-HHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeec
Q 033762 15 LELAEVEIMIAEP--KS---RGKGL-AKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (112)
Q Consensus 15 ~~~~~i~~~~v~~--~~---rg~Gi-g~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~ 79 (112)
++.+|.+.+++++ .- .+... +.+++.-+++++. +.|++.|...+ .....+.+.+.||....
T Consensus 96 p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~ie~a~-~~G~~~IvtVt---~~~meril~r~Gw~~~r 162 (209)
T COG3916 96 PGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMIEYAL-ARGITGIVTVT---DTGMERILRRAGWPLTR 162 (209)
T ss_pred CCeEEEeeeeeccccchhhcCCccHHHHHHHHHHHHHHH-HcCCceEEEEE---chHHHHHHHHcCCCeEE
Confidence 4679999998865 22 22233 6688889999987 77999996655 45788899999998764
No 111
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=89.52 E-value=2.1 Score=29.30 Aligned_cols=62 Identities=15% Similarity=0.114 Sum_probs=49.1
Q ss_pred EEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 18 AEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 18 ~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
....+...++++++.+-...|+..+++++. +.|++.+-......|....+|=++.||+.+..
T Consensus 220 ~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~-~~G~~~fDfG~s~~~~G~~~FK~~~G~~~~~l 281 (330)
T TIGR03019 220 VLPYYAGGLREARDVAANDLMYWELMRRAC-ERGLRVFDFGRSKRGTGPFKFKKNWGFEPQPL 281 (330)
T ss_pred EEEEeccChHHHHhhChHHHHHHHHHHHHH-HCCCcEEEcCCCCCCCccHHHHhcCCCeeccc
Confidence 333345557899998989999999999998 55999888777666667778888899998874
No 112
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=89.41 E-value=3 Score=27.62 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=34.4
Q ss_pred EEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCcc
Q 033762 19 EVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESN 63 (112)
Q Consensus 19 ~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n 63 (112)
.--+..-||++...++|+-++-.-+++|+ ++|.+-+++-....+
T Consensus 169 SAVY~FyDPd~~~~SLG~~~iL~qI~~ak-~~gl~y~YLGY~I~~ 212 (240)
T PRK01305 169 SAVYTFYDPDEEHRSLGTFAILWQIELAK-RLGLPYVYLGYWIKG 212 (240)
T ss_pred eeEEEeeCCCccccCCHHHHHHHHHHHHH-HcCCCeEeeeEEECC
Confidence 33345558999999999999999999997 779988887655443
No 113
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=89.29 E-value=0.82 Score=34.04 Aligned_cols=57 Identities=12% Similarity=0.155 Sum_probs=48.4
Q ss_pred cccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeeccccce
Q 033762 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIF 84 (112)
Q Consensus 27 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~~~~~ 84 (112)
.+...-++.++|++-++.-++ ..|...-.++|.+.+.+-++||.++||...+....+
T Consensus 826 ~~a~D~~~~k~m~~vll~tL~-aNGsrGaf~~V~~dD~~~~~fys~lG~~d~~~~e~~ 882 (891)
T KOG3698|consen 826 MDASDAHPMKKMIQVLLVTLA-ANGSRGAFLTVAIDDIERQKFYSELGLTDLGLSECQ 882 (891)
T ss_pred cccccchHHHHHHHHHHHHHH-hcCCcceeEEechhHHHHHHHHHHhchHHHhHhhcc
Confidence 344467899999999998876 669999999999999999999999999988765444
No 114
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=85.75 E-value=0.26 Score=34.07 Aligned_cols=40 Identities=10% Similarity=0.150 Sum_probs=29.4
Q ss_pred EEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHH
Q 033762 4 DVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMM 43 (112)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~ 43 (112)
.++++..+....+...+.++.+-|-||++|+|.-|++.--
T Consensus 249 ~vGyFSKEK~S~~~yNLaCILtLP~yQRrGYG~lLIdFSY 288 (395)
T COG5027 249 LVGYFSKEKESEQDYNLACILTLPPYQRRGYGKLLIDFSY 288 (395)
T ss_pred eeeeechhhcccccCceEEEEecChhHhcccceEeeeeee
Confidence 3455555544435568999999999999999998876543
No 115
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=84.23 E-value=0.68 Score=26.08 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=20.2
Q ss_pred CeEEEEEEEeCcccccCcHHHHHH
Q 033762 16 ELAEVEIMIAEPKSRGKGLAKDAV 39 (112)
Q Consensus 16 ~~~~i~~~~v~~~~rg~Gig~~l~ 39 (112)
..++++.++|+|+||+......|+
T Consensus 77 ~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 77 RVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred cEEEeehheECHhHCCChHHHHHh
Confidence 689999999999999987665553
No 116
>PRK00756 acyltransferase NodA; Provisional
Probab=83.37 E-value=4 Score=25.58 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=39.4
Q ss_pred CeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhC
Q 033762 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKL 73 (112)
Q Consensus 16 ~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~ 73 (112)
-.++++.+.|.|+..|.||+..+ +.+.--+ +++++.--..++.. +.++-.+++
T Consensus 84 LVaElGLygVRpDLEGlGi~~S~-r~m~PvL-q~LgVPF~FGtVR~---al~~Hv~R~ 136 (196)
T PRK00756 84 LVAELGLYGVRPDLEGLGIAHSI-RAMYPVL-QELGVPFAFGTVRH---ALRNHVERL 136 (196)
T ss_pred eEEEeeeeeeccccccccchhhH-HHHHHHH-HhcCCCeecccchH---HHHHHHHHH
Confidence 46899999999999999999877 5555555 47888877777754 344444444
No 117
>COG2935 Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=82.43 E-value=9.4 Score=25.45 Aligned_cols=52 Identities=13% Similarity=0.168 Sum_probs=38.6
Q ss_pred EEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCee
Q 033762 19 EVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 77 (112)
Q Consensus 19 ~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~ 77 (112)
...+..-||++...++|+.++-.=+.+|. +.|...+++.....+ ..|++|+.
T Consensus 176 SsVY~FydPd~s~~SLGt~~iL~~I~~aq-~~~l~yvYLGYwI~~------c~KM~YKa 227 (253)
T COG2935 176 SSVYTFYDPDMSKRSLGTLSILDQIAIAQ-RLGLPYVYLGYWIKG------CPKMNYKA 227 (253)
T ss_pred eeEEEEeCCChhhhcchHHHHHHHHHHHH-HhCCCeEEEEEEECC------ccccCccc
Confidence 44444458999999999988888888886 679999988766554 34555553
No 118
>KOG4601 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.28 E-value=8.9 Score=25.37 Aligned_cols=55 Identities=9% Similarity=0.117 Sum_probs=35.0
Q ss_pred EEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHh-CCCe
Q 033762 18 AEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQK-LGFE 76 (112)
Q Consensus 18 ~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~-~Gf~ 76 (112)
.=|--++|++..|+.|.|++|.+.+++. .+...=.+.++.-....+.|.+| .|-+
T Consensus 109 lcILDFyVheS~QR~G~G~~lfdyMl~k----E~vephQ~a~DrPS~kLl~Fm~khYgl~ 164 (264)
T KOG4601|consen 109 LCILDFYVHESEQRSGNGFKLFDYMLKK----ENVEPHQCAFDRPSAKLLQFMEKHYGLK 164 (264)
T ss_pred ceEEEEEeehhhhhcCchHHHHHHHHHh----cCCCchheeccChHHHHHHHHHHhcCcc
Confidence 3345555679999999999998888764 24444445555444455666654 4444
No 119
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=80.18 E-value=2.6 Score=24.63 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=19.6
Q ss_pred ccEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 52 IHVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 52 ~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
+..+.+.|. +=.+|++||+++||+....
T Consensus 4 i~Hi~i~v~-Dl~~s~~FY~~LG~~~~~~ 31 (142)
T cd08353 4 MDNVGIVVR-DLEAAIAFFLELGLELEGR 31 (142)
T ss_pred eeeEEEEeC-CHHHHHHHHHHcCCEEccc
Confidence 445555554 4458899999999987653
No 120
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=79.92 E-value=2.7 Score=23.78 Aligned_cols=19 Identities=26% Similarity=0.510 Sum_probs=14.7
Q ss_pred CccHHHHHHHHhCCCeeec
Q 033762 61 ESNGASLRLFQKLGFEDIS 79 (112)
Q Consensus 61 ~~n~~s~~~y~~~Gf~~~~ 79 (112)
++=.+|++||+++||+...
T Consensus 9 ~D~~~a~~FY~~LGf~~~~ 27 (122)
T cd07235 9 ADMAKSLDFYRRLGFDFPE 27 (122)
T ss_pred ccHHHHHHHHHHhCceecC
Confidence 3345889999999998754
No 121
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=79.04 E-value=2.2 Score=24.13 Aligned_cols=19 Identities=32% Similarity=0.314 Sum_probs=15.6
Q ss_pred cHHHHHHHHhCCCeeeccc
Q 033762 63 NGASLRLFQKLGFEDISYS 81 (112)
Q Consensus 63 n~~s~~~y~~~Gf~~~~~~ 81 (112)
=.+|++||+.+||+.....
T Consensus 12 l~~s~~FY~~LGf~~~~~~ 30 (113)
T cd08356 12 FAESKQFYQALGFELEWEN 30 (113)
T ss_pred HHHHHHHHHHhCCeeEecC
Confidence 3588999999999987654
No 122
>PHA02769 hypothetical protein; Provisional
Probab=78.25 E-value=4.5 Score=23.69 Aligned_cols=45 Identities=20% Similarity=0.189 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHH--HhcCccEEEEEeCCccHHHHHHHHhCCCeeecccc
Q 033762 36 KDAVLMMMAYAV--ENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (112)
Q Consensus 36 ~~l~~~~~~~~~--~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~~~ 82 (112)
-.++..+...+. +..|+..++..-.|+ .|..+|.|.||+.+|...
T Consensus 95 d~lvnfl~~l~~k~~~dg~evlwtlgfpd--hsnaly~kagfk~vg~ts 141 (154)
T PHA02769 95 DHLVNFLNDLAEKLKKDGFEVLWTLGFPD--HSNALYKKAGFKLVGQTS 141 (154)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEecCCC--cchhHHhhhhhhHhcccc
Confidence 344444443321 244777666555555 477899999999998644
No 123
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=77.67 E-value=12 Score=24.42 Aligned_cols=55 Identities=20% Similarity=0.284 Sum_probs=34.5
Q ss_pred HhcCccEEEE---EeCCccHHHHHHHHhCCCeeeccccceeccceeeecc-hhhHHHHHHHhh
Q 033762 48 ENFGIHVFRA---KIGESNGASLRLFQKLGFEDISYSEIFKEVTLELPVE-NAKREELLVLTA 106 (112)
Q Consensus 48 ~~~~~~~l~~---~~~~~n~~s~~~y~~~Gf~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 106 (112)
+.++.+++.+ .+.+-|+....|++..||..+. +...++.-... |...++..|++.
T Consensus 114 ~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~----~~~Lgi~dn~eigr~~P~~~y~lA 172 (238)
T COG3473 114 NALGAQRISVLTPYIDEVNQREIEFLEANGFEIVD----FKGLGITDNLEIGRQEPWAVYRLA 172 (238)
T ss_pred HhhCcceEEEeccchhhhhhHHHHHHHhCCeEEEE----eeccCCcccchhcccChHHHHHHH
Confidence 3567776654 3457899999999999999985 33333322222 344445555554
No 124
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=75.19 E-value=7.8 Score=27.10 Aligned_cols=69 Identities=13% Similarity=0.128 Sum_probs=36.9
Q ss_pred cCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHh--cCccEEEEEeCC--ccHHHHHHHHhCCCeeec
Q 033762 11 DLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVEN--FGIHVFRAKIGE--SNGASLRLFQKLGFEDIS 79 (112)
Q Consensus 11 ~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~--~~~~~l~~~~~~--~n~~s~~~y~~~Gf~~~~ 79 (112)
.++.....++..+.++|+||+-|.|+.|-+.=.=++... .=-.++.++... +-..--.||+.+|-+.-+
T Consensus 115 ~~d~tG~sEl~tLfL~p~~R~~~~G~lLSr~RfLFiA~~~~rF~~~viAElrG~~De~G~SPFWdalG~~FF~ 187 (342)
T PF04958_consen 115 SNDYTGCSELCTLFLDPDYRGGGNGRLLSRSRFLFIAQHRERFADRVIAELRGVSDEDGRSPFWDALGRHFFD 187 (342)
T ss_dssp E-TTTTSEEEEEEEE-GGGTTSHHHHHHHHHHHHHHHH-GGGS-SEEEEE--B---TT---HHHHHTGGGTS-
T ss_pred ecCCCCCeeeEEEEECHHHcCCchHHHHHHHHHHHHHhChhhcchheeeeccCCcCCCCCCchHHHhhccccC
Confidence 444457789999999999999999997765443333211 111344444331 111233578777755443
No 125
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=72.20 E-value=7.8 Score=22.04 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=14.8
Q ss_pred ccHHHHHHHHhCCCeeec
Q 033762 62 SNGASLRLFQKLGFEDIS 79 (112)
Q Consensus 62 ~n~~s~~~y~~~Gf~~~~ 79 (112)
+=.+|+.||+.+||+...
T Consensus 10 Dl~~s~~FY~~lGf~~~~ 27 (124)
T cd09012 10 DLEKSTAFYTALGFEFNP 27 (124)
T ss_pred CHHHHHHHHHHCCCEEcc
Confidence 346899999999999764
No 126
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=71.59 E-value=4.6 Score=22.89 Aligned_cols=21 Identities=19% Similarity=0.233 Sum_probs=16.3
Q ss_pred ccHHHHHHHHhCCCeeecccc
Q 033762 62 SNGASLRLFQKLGFEDISYSE 82 (112)
Q Consensus 62 ~n~~s~~~y~~~Gf~~~~~~~ 82 (112)
+=..|++||+++||+......
T Consensus 12 Dl~~s~~FY~~lG~~~~~~~~ 32 (120)
T cd08350 12 DLDATEAFYARLGFSVGYRQA 32 (120)
T ss_pred CHHHHHHHHHHcCCEEEecCC
Confidence 345899999999999876443
No 127
>PRK04531 acetylglutamate kinase; Provisional
Probab=71.25 E-value=8.8 Score=27.39 Aligned_cols=52 Identities=12% Similarity=0.070 Sum_probs=41.9
Q ss_pred CeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhC
Q 033762 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKL 73 (112)
Q Consensus 16 ~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~ 73 (112)
..+++..+++.+..||.|++.-+...+.+. .+.+.+.+.++|+....+|++.
T Consensus 309 ~~~~Ldkf~v~~~~~~~~v~d~vf~~~~~~------~~~L~Wrsr~~n~~~~Wyf~~s 360 (398)
T PRK04531 309 GGPYLDKFAVLDDARGEGLGRAVWNVMREE------TPQLFWRSRHNNTINKFYYAES 360 (398)
T ss_pred CceEeEEEEEccchhhcChHHHHHHHHHhh------CCceEEEcCCCCCccceeeecc
Confidence 568999999999999999999888877543 2468889999998766666654
No 128
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=68.40 E-value=22 Score=22.95 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=36.3
Q ss_pred cHHHHHHHHHHHHHHHhc-CccEEEEEeCCccHHHHHHHHhCCCeeeccc
Q 033762 33 GLAKDAVLMMMAYAVENF-GIHVFRAKIGESNGASLRLFQKLGFEDISYS 81 (112)
Q Consensus 33 Gig~~l~~~~~~~~~~~~-~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~~ 81 (112)
|.|-.++..+++...... ...++.+-.......-+++..++||....+.
T Consensus 74 GMGG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 74 GMGGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp EE-HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTTEEEEEEE
T ss_pred cCCHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCCCEEEEeE
Confidence 788888888888765432 4567888888888888999999999998763
No 129
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=68.18 E-value=4.1 Score=24.26 Aligned_cols=18 Identities=28% Similarity=0.279 Sum_probs=15.3
Q ss_pred cHHHHHHHHhCCCeeecc
Q 033762 63 NGASLRLFQKLGFEDISY 80 (112)
Q Consensus 63 n~~s~~~y~~~Gf~~~~~ 80 (112)
=++|.+||.++||+....
T Consensus 14 L~~S~~Fy~alGfk~Npq 31 (133)
T COG3607 14 LEASKAFYTALGFKFNPQ 31 (133)
T ss_pred HHHHHHHHHHhCcccCCC
Confidence 368899999999998763
No 130
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=66.41 E-value=9.8 Score=20.76 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=16.5
Q ss_pred HHHHHHHHh-CCCeeeccccce
Q 033762 64 GASLRLFQK-LGFEDISYSEIF 84 (112)
Q Consensus 64 ~~s~~~y~~-~Gf~~~~~~~~~ 84 (112)
..|.+||++ +||+.......+
T Consensus 7 ~~a~~FY~~~lg~~~~~~~~~~ 28 (108)
T PF12681_consen 7 EAAAAFYEDVLGFEVVFDDPDY 28 (108)
T ss_dssp HHHHHHHHHTTTSEEEEEETSE
T ss_pred HHHHHHHHHhcCCEEEEeCCCe
Confidence 578999997 999998854433
No 131
>COG5630 ARG2 Acetylglutamate synthase [Amino acid transport and metabolism]
Probab=66.37 E-value=21 Score=25.62 Aligned_cols=58 Identities=9% Similarity=0.100 Sum_probs=38.5
Q ss_pred EEEEEEeecCCCCCeEEEEEEEeCccccc-CcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHH
Q 033762 3 GDVNIYMNDLDNLELAEVEIMIAEPKSRG-KGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGA 65 (112)
Q Consensus 3 G~~~~~~~~~~~~~~~~i~~~~v~~~~rg-~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~ 65 (112)
|.+.+...........+++.++|.++.|| .||+..+..-+-+..- +.+.+...-+|..
T Consensus 386 g~aIlTyegs~~~~vpYLDKfAVl~~aQGs~gisd~vfniM~e~fP-----~eL~WRSR~~N~v 444 (495)
T COG5630 386 GAAILTYEGSGENNVPYLDKFAVLDDAQGSEGISDAVFNIMREEFP-----NELFWRSRHNNQV 444 (495)
T ss_pred eeEEEEeeccCCCCCcceeeeeccccccccchHHHHHHHHHHHhCc-----HhhhhhhcccCcc
Confidence 44444444333336789999999999999 9999988777765422 2445555555644
No 132
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]
Probab=65.93 E-value=8.9 Score=24.89 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=33.4
Q ss_pred CcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeec
Q 033762 32 KGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (112)
Q Consensus 32 ~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~ 79 (112)
+|+|.+-+..++-+|.+. .+..-+.-+.+|+.++|+....
T Consensus 121 KGIG~ETaDsILlYa~~r--------p~FVvD~Yt~R~l~rlg~i~~k 160 (215)
T COG2231 121 KGIGKETADSILLYALDR--------PVFVVDKYTRRLLSRLGGIEEK 160 (215)
T ss_pred CCcchhhHHHHHHHHhcC--------cccchhHHHHHHHHHhcccccc
Confidence 799999999999999843 2445677899999999998875
No 133
>cd03173 DUF619-like DUF619 domain of various N-acetylglutamate Kinases and N-acetylglutamate Synthases. DUF619-like: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. This subgroup also includes the DUF619 domain of the FABP N-acetylglutamate kinase (NAGK), the enzyme that catalyzes the second reaction of arginine
Probab=65.53 E-value=23 Score=20.10 Aligned_cols=46 Identities=2% Similarity=0.013 Sum_probs=37.0
Q ss_pred CeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHH
Q 033762 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASL 67 (112)
Q Consensus 16 ~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~ 67 (112)
..+++..+++.+..++.|++..+...+.+. .+.+...+.++|+...
T Consensus 32 ~v~~LdkFav~~~~~~~gv~D~vf~~i~~d------~~~L~Wrsr~~n~~n~ 77 (98)
T cd03173 32 SIPYLDKFAVSDHLWLNNVTDNIFNLIRKD------FPSLLWRVRENDANLK 77 (98)
T ss_pred CCEEEEEEEEcccccccCHHHHHHHHHHhh------CCeeEEEeCCCCCccc
Confidence 578999999999999999999888877543 3578888888887543
No 134
>KOG3014 consensus Protein involved in establishing cohesion between sister chromatids during DNA replication [Replication, recombination and repair]
Probab=65.42 E-value=26 Score=23.46 Aligned_cols=53 Identities=15% Similarity=0.110 Sum_probs=35.3
Q ss_pred CeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCc--cEE-EEEeCCccHHHHHHHH
Q 033762 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGI--HVF-RAKIGESNGASLRLFQ 71 (112)
Q Consensus 16 ~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~--~~l-~~~~~~~n~~s~~~y~ 71 (112)
-.+-|+.+.|.+..|++|+++.|+..+...-. .|. .+. .+.+.|++. ...|..
T Consensus 182 ~~~GIsRIWV~s~~Rr~gIAs~lldva~~~~~--~g~~isr~~iAfs~PTdd-Gk~lAt 237 (257)
T KOG3014|consen 182 AICGISRIWVSSLRRRKGIASLLLDVARCNFV--YGEVISREEIAFSDPTDD-GKKLAT 237 (257)
T ss_pred cEeeeEEEEeehhhhhhhhHHHHHHHHHHhhh--hhcccchhheEecCCCch-hHHHHH
Confidence 45778899999999999999999998876532 221 122 255666653 344443
No 135
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=64.17 E-value=15 Score=21.41 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=18.5
Q ss_pred EEEEEeCCccHHHHHHHHh-CCCeeecc
Q 033762 54 VFRAKIGESNGASLRLFQK-LGFEDISY 80 (112)
Q Consensus 54 ~l~~~~~~~n~~s~~~y~~-~Gf~~~~~ 80 (112)
.+.+.| ++=.+|.+||++ +||+....
T Consensus 3 Hi~i~V-~D~e~s~~FY~~vLGf~~~~~ 29 (136)
T cd08342 3 HVEFYV-GNAKQLASWFSTKLGFEPVAY 29 (136)
T ss_pred EEEEEe-CCHHHHHHHHHHhcCCeEEEe
Confidence 344555 344578899998 99998764
No 136
>PF11124 Pho86: Inorganic phosphate transporter Pho86; InterPro: IPR024297 Pho86p is an ER protein which is produced in response to phosphate starvation. It is essential for growth when phosphate levels are limiting []. Pho86p is also involved in the regulation of Pho84p, a high-affinity phosphate transporter, which is localised to the endoplasmic reticulum (ER) in low phosphate medium. When the level of phosphate increases Pho84p is transported to the vacuole. Pho86p is required for packaging of Pho84p in to COPII vesicles [].
Probab=64.14 E-value=45 Score=23.04 Aligned_cols=79 Identities=13% Similarity=0.132 Sum_probs=54.9
Q ss_pred eEEEEEEeecCCC---CCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHH---hc-----C-ccEEEEEeCCccHHHHHH
Q 033762 2 VGDVNIYMNDLDN---LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVE---NF-----G-IHVFRAKIGESNGASLRL 69 (112)
Q Consensus 2 vG~~~~~~~~~~~---~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~---~~-----~-~~~l~~~~~~~n~~s~~~ 69 (112)
|+.+.+.+..... .-...|..+-+..-|..-|+-..|++.++-.+++ +. + --.+.+++.+.++...++
T Consensus 181 IAiisl~~~~~~St~~~~vv~ItgigvRkVy~Ksgi~e~LidWA~~Rtr~l~~ey~k~k~~~si~ll~d~YSFD~~~~k~ 260 (304)
T PF11124_consen 181 IAIISLVPNKDQSTKENFVVKITGIGVRKVYVKSGIDEDLIDWAMLRTRQLYKEYLKGKKGCSIKLLVDVYSFDKDMKKT 260 (304)
T ss_pred eEEEEeccccccCCCceEEEEEeeeEEEEEEeecChHHHHHHHHHHHHHHHHHHhccccccceEEEEEEeeeccHHHHHH
Confidence 4555554432211 1246777777778888899999998888765543 11 1 224667888999999999
Q ss_pred HHhCCCeeecc
Q 033762 70 FQKLGFEDISY 80 (112)
Q Consensus 70 y~~~Gf~~~~~ 80 (112)
.++.||+....
T Consensus 261 L~~~gF~~i~s 271 (304)
T PF11124_consen 261 LKKKGFKKISS 271 (304)
T ss_pred HHHCCCeeeec
Confidence 99999999873
No 137
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=63.87 E-value=35 Score=21.63 Aligned_cols=56 Identities=16% Similarity=0.205 Sum_probs=44.6
Q ss_pred CeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeec
Q 033762 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (112)
Q Consensus 16 ~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~ 79 (112)
..+||+.++.. +.|.++.++..+...+. ..|++.+ +...+...+.++.++|.....
T Consensus 86 ~IvEvGnLAs~----~~g~~~~l~~~l~~~L~-~~g~~w~---vfTaT~~lr~~~~rlgl~~~~ 141 (179)
T PF12261_consen 86 QIVEVGNLASF----SPGAARLLFAALAQLLA-QQGFEWV---VFTATRQLRNLFRRLGLPPTV 141 (179)
T ss_pred heeEeechhhc----CcccHHHHHHHHHHHHH-HCCCCEE---EEeCCHHHHHHHHHcCCCcee
Confidence 56888888863 47888999999988876 6688866 555677889999999998764
No 138
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=63.25 E-value=11 Score=26.27 Aligned_cols=30 Identities=17% Similarity=0.096 Sum_probs=24.0
Q ss_pred CCCCCeEEEEEEEeCcccccCcHHHHHHHH
Q 033762 12 LDNLELAEVEIMIAEPKSRGKGLAKDAVLM 41 (112)
Q Consensus 12 ~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~ 41 (112)
++.....+|..+.++|+||+-|.|+.|-+.
T Consensus 112 nd~tG~sElctLfL~p~~R~~~~G~LLSr~ 141 (335)
T TIGR03243 112 NDLTGSSELCTLFLDPDYRKGGNGRLLSRS 141 (335)
T ss_pred ccCCCCeeeEEEEECHHHcCCCchhhHHHH
Confidence 344467899999999999999998876543
No 139
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=62.24 E-value=28 Score=20.03 Aligned_cols=54 Identities=20% Similarity=0.383 Sum_probs=25.4
Q ss_pred eCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHH---HHHHHhCCCeeec
Q 033762 25 AEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGAS---LRLFQKLGFEDIS 79 (112)
Q Consensus 25 v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s---~~~y~~~Gf~~~~ 79 (112)
+.+...++| -++-+-++++.|-+.+++.++.+.+..+.... .+-+.=+||+.+.
T Consensus 30 ip~~~~~~~-~K~~lvaLLElAee~L~c~~vvic~~k~~~d~~~Llr~l~~vGF~lv~ 86 (108)
T PF02100_consen 30 IPSSALGQG-SKESLVALLELAEEKLGCSHVVICLDKNRPDRASLLRTLMWVGFELVT 86 (108)
T ss_dssp -SS---SS---SHHHHHHHHHHHHHH----EEEEE---SS-HHHHHHHHTTT--EEE-
T ss_pred ECCcccccc-cHHHHHHHHHHhcCcCCCCEEEEEEECCchhHHHhhhhcEeeccEecC
Confidence 334455554 56677778888877789999998888766554 4444456777765
No 140
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=62.13 E-value=12 Score=26.11 Aligned_cols=31 Identities=10% Similarity=-0.064 Sum_probs=24.2
Q ss_pred cCCCCCeEEEEEEEeCcccccCcHHHHHHHH
Q 033762 11 DLDNLELAEVEIMIAEPKSRGKGLAKDAVLM 41 (112)
Q Consensus 11 ~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~ 41 (112)
.++.....+|..+.++|+||+-|.|+.|-+.
T Consensus 112 ~nd~tG~sElctLfL~p~~R~~~~G~lLSr~ 142 (336)
T TIGR03245 112 CHELTGSSLLCSFYVDPRLRKTEAAELLSRA 142 (336)
T ss_pred eccCCCCeeeEEEEECHHHcCCCchhHHHHH
Confidence 3344467899999999999999988876543
No 141
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=61.42 E-value=20 Score=25.36 Aligned_cols=69 Identities=16% Similarity=0.137 Sum_probs=44.9
Q ss_pred CeEEEEEEee-----cCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccE---EEEEeCCccHHHHHHHH
Q 033762 1 MVGDVNIYMN-----DLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHV---FRAKIGESNGASLRLFQ 71 (112)
Q Consensus 1 ~vG~~~~~~~-----~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~---l~~~~~~~n~~s~~~y~ 71 (112)
+||+|+..+. +... ..++|..++|+.+.|+++++--|++++-..+.-+ |+-. -...+.+.+.+..+-|.
T Consensus 147 LVaFIsaiP~~irvrdk~v-k~veINFLCVHKkLRSKRlaPvLIrEITRRvnl~-gIfqA~yTaGvvLp~PVstcRY~H 223 (421)
T KOG2779|consen 147 LVAFISAIPATIRVRDKVV-KMVEINFLCVHKKLRSKRLAPVLIREITRRVNLE-GIFQAAYTAGVVLPKPVSTCRYWH 223 (421)
T ss_pred eEEEEeccccEEEEcccee-eeeeEEEEEEehhhhccccccHHHHHHHHHhhhh-hhhhHhhhcceeeccccchhhhhh
Confidence 4677755332 2222 5799999999999999999999999987765322 2211 12345566665555554
No 142
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=61.30 E-value=12 Score=26.06 Aligned_cols=30 Identities=17% Similarity=0.141 Sum_probs=23.8
Q ss_pred cCCCCCeEEEEEEEeCcccccCcHHHHHHH
Q 033762 11 DLDNLELAEVEIMIAEPKSRGKGLAKDAVL 40 (112)
Q Consensus 11 ~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~ 40 (112)
.++.....+|..+.++|+||+-|.|+.|-+
T Consensus 111 ~nd~tG~SElctLfL~p~~R~~~~G~LLSr 140 (336)
T TIGR03244 111 SNDLTGYSELCTLFLDPDYRKGGNGRLLSK 140 (336)
T ss_pred eccCCCCeeeEEEEECHHHcCCcchhhHHH
Confidence 334446789999999999999998887644
No 143
>PRK10456 arginine succinyltransferase; Provisional
Probab=61.10 E-value=12 Score=26.16 Aligned_cols=31 Identities=16% Similarity=0.102 Sum_probs=24.2
Q ss_pred cCCCCCeEEEEEEEeCcccccCcHHHHHHHH
Q 033762 11 DLDNLELAEVEIMIAEPKSRGKGLAKDAVLM 41 (112)
Q Consensus 11 ~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~ 41 (112)
.++.....+|..+.++|+||+-|.|+.|-+.
T Consensus 113 ~nd~tG~sElctLfl~p~~R~~~~G~LLSr~ 143 (344)
T PRK10456 113 SNDHTGSSELCTLFLDPDWRKEGNGYLLSKS 143 (344)
T ss_pred eccCCCCceeEEEEECHHHcCCCchhHHHHH
Confidence 3344467899999999999999988876543
No 144
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=60.51 E-value=15 Score=21.74 Aligned_cols=18 Identities=11% Similarity=0.523 Sum_probs=14.3
Q ss_pred ccHHHHHHHH-hCCCeeec
Q 033762 62 SNGASLRLFQ-KLGFEDIS 79 (112)
Q Consensus 62 ~n~~s~~~y~-~~Gf~~~~ 79 (112)
+-..|++||+ .+||+...
T Consensus 12 DlerSi~FY~~vLG~~~~~ 30 (127)
T cd08358 12 NRNKTIKFYREVLGMKVLR 30 (127)
T ss_pred CHHHHHHHHHHhcCCEEEe
Confidence 3568999995 59999765
No 145
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=59.88 E-value=10 Score=21.24 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=18.3
Q ss_pred cEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 53 HVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 53 ~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
..+.+.|.. =.+|.+||+.+||+....
T Consensus 5 ~hv~l~v~D-l~~s~~FY~~lGl~~~~~ 31 (113)
T cd07267 5 AHVRFEHPD-LDKAERFLTDFGLEVAAR 31 (113)
T ss_pred EEEEEccCC-HHHHHHHHHHcCCEEEEe
Confidence 344444443 347899999999987643
No 146
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=59.35 E-value=14 Score=20.55 Aligned_cols=30 Identities=13% Similarity=0.397 Sum_probs=21.0
Q ss_pred ccEEEEEeCCccHHHHHHHHh-CCCeeecccc
Q 033762 52 IHVFRAKIGESNGASLRLFQK-LGFEDISYSE 82 (112)
Q Consensus 52 ~~~l~~~~~~~n~~s~~~y~~-~Gf~~~~~~~ 82 (112)
+.++.+.|..- +++..||++ +||+......
T Consensus 2 l~Hi~i~v~d~-~~~~~FY~~~lG~~~~~~~~ 32 (128)
T PF00903_consen 2 LDHIAIRVKDL-EKAIDFYTDVLGFRLVEESD 32 (128)
T ss_dssp EEEEEEEESCH-HHHHHHHHHTTTSEEEEEEE
T ss_pred eEEEEEEcCCH-HHHHHHHHHHhCCcEEeeec
Confidence 34565555554 488999996 9999987544
No 147
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=58.93 E-value=14 Score=20.54 Aligned_cols=27 Identities=11% Similarity=0.256 Sum_probs=18.1
Q ss_pred cEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 53 HVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 53 ~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
..+.+.+. +=.+|.+||+.+||+....
T Consensus 4 ~hv~l~v~-d~~~s~~FY~~lG~~~~~~ 30 (112)
T cd08344 4 DHFALEVP-DLEVARRFYEAFGLDVREE 30 (112)
T ss_pred eEEEEecC-CHHHHHHHHHHhCCcEEee
Confidence 34444443 2358899999999998643
No 148
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=58.20 E-value=34 Score=19.71 Aligned_cols=44 Identities=16% Similarity=0.207 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 36 KDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 36 ~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
...+..+++.+. ..|.+.+++.....+....+..++.|.+..|.
T Consensus 65 ~~~~~~~v~~~~-~~g~~~v~~~~g~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 65 PDKVPEIVDEAA-ALGVKAVWLQPGAESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp HHHHHHHHHHHH-HHT-SEEEE-TTS--HHHHHHHHHTT-EEEES
T ss_pred HHHHHHHHHHHH-HcCCCEEEEEcchHHHHHHHHHHHcCCEEEeC
Confidence 344555566665 56999999999999999999999999999874
No 149
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=55.50 E-value=12 Score=22.27 Aligned_cols=24 Identities=17% Similarity=0.404 Sum_probs=19.0
Q ss_pred EEEEeCcccccCcHHHHHHHHHHH
Q 033762 21 EIMIAEPKSRGKGLAKDAVLMMMA 44 (112)
Q Consensus 21 ~~~~v~~~~rg~Gig~~l~~~~~~ 44 (112)
-.+.+||+++|.-|.+.+.+++-.
T Consensus 58 VIILTD~D~~Ge~Irk~l~~~l~~ 81 (127)
T COG1658 58 VIILTDPDRKGERIRKKLKEYLPG 81 (127)
T ss_pred EEEEeCCCcchHHHHHHHHHHhcc
Confidence 356679999999888888777655
No 150
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=54.99 E-value=84 Score=23.67 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=44.4
Q ss_pred CeEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCC
Q 033762 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGE 61 (112)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~ 61 (112)
+||++++.+.... ....++.+-.+|+.- +|+...|...++.+++ +.|+.++.+...|
T Consensus 404 VvaFa~l~~~~~~--~~~SlDlMR~sp~ap-~g~mdfLf~~li~~aK-e~G~~~fsLgmAp 460 (538)
T COG2898 404 VVAFANLMPTGGK--EGYSLDLMRRSPDAP-NGTMDFLFSELILWAK-EEGYQRFSLGMAP 460 (538)
T ss_pred eEEEEeecccCCc--ceeEEEeeecCCCCC-chHHHHHHHHHHHHHH-HcCCeEEecCCcc
Confidence 4778887765542 457788888888877 5899999999999997 6699999866554
No 151
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=54.22 E-value=49 Score=20.34 Aligned_cols=44 Identities=25% Similarity=0.301 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHhcCccEEEEEe-----------CCccHHHHHHHHhCCCeeec
Q 033762 35 AKDAVLMMMAYAVENFGIHVFRAKI-----------GESNGASLRLFQKLGFEDIS 79 (112)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~l~~~~-----------~~~n~~s~~~y~~~Gf~~~~ 79 (112)
++.+.+.+.+.+. .+|++.+.+.+ -+..+++++-..+.|++...
T Consensus 74 Aq~aa~~~a~k~~-~~Gi~~v~V~vr~~gg~~~kg~GpGr~~airaL~~~glkI~~ 128 (149)
T PTZ00129 74 AMMAAQDVAARCK-ELGINALHIKLRATGGVRTKTPGPGAQAALRALARAGLKIGR 128 (149)
T ss_pred HHHHHHHHHHHHH-HcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHCCCEEEE
Confidence 4456666777776 67999999888 58889999999999999875
No 152
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=52.73 E-value=22 Score=21.60 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=18.7
Q ss_pred CccEEEEEeCCccHHHHHHHHh-CCCeee
Q 033762 51 GIHVFRAKIGESNGASLRLFQK-LGFEDI 78 (112)
Q Consensus 51 ~~~~l~~~~~~~n~~s~~~y~~-~Gf~~~ 78 (112)
++.++.+.|.. =..|+.||++ +||+..
T Consensus 4 ~i~Hv~i~V~D-le~s~~FY~~~LG~~~~ 31 (162)
T TIGR03645 4 TFSHIGISVPD-LDAAVKFYTEVLGWYLI 31 (162)
T ss_pred eEEEEEEEeCC-HHHHHHHHHHhcCCEEE
Confidence 44556565544 3588999976 899875
No 153
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=52.51 E-value=26 Score=19.47 Aligned_cols=27 Identities=11% Similarity=0.252 Sum_probs=17.4
Q ss_pred cEEEEEeCCccHHHHHHHHh-CCCeeecc
Q 033762 53 HVFRAKIGESNGASLRLFQK-LGFEDISY 80 (112)
Q Consensus 53 ~~l~~~~~~~n~~s~~~y~~-~Gf~~~~~ 80 (112)
..+.+.| ++=..|..||++ +||+....
T Consensus 3 ~hv~l~v-~d~~~a~~FY~~~lG~~~~~~ 30 (126)
T cd08346 3 HHVTLIT-RDAQETVDFYTDVLGLRLVKK 30 (126)
T ss_pred ccEEEEc-CChhHhHHHHHHccCCEEeee
Confidence 3444444 334578999975 89987654
No 154
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=51.51 E-value=45 Score=22.08 Aligned_cols=35 Identities=17% Similarity=0.356 Sum_probs=26.8
Q ss_pred HHHhcCccEEEEEeC---CccHHHHHHHHhCCCeeecc
Q 033762 46 AVENFGIHVFRAKIG---ESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 46 ~~~~~~~~~l~~~~~---~~n~~s~~~y~~~Gf~~~~~ 80 (112)
+.+.+|+++|.+.+- .-|....+||++.||+.+..
T Consensus 114 AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~ 151 (239)
T TIGR02990 114 GLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNF 151 (239)
T ss_pred HHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeee
Confidence 344789999865432 45788899999999999875
No 155
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=51.41 E-value=32 Score=18.99 Aligned_cols=29 Identities=21% Similarity=0.439 Sum_probs=19.2
Q ss_pred ccEEEEEeCCccHHHHHHHHh-CCCeeeccc
Q 033762 52 IHVFRAKIGESNGASLRLFQK-LGFEDISYS 81 (112)
Q Consensus 52 ~~~l~~~~~~~n~~s~~~y~~-~Gf~~~~~~ 81 (112)
+..+.+.+ ++=.++.+||++ +||+.....
T Consensus 4 l~hi~l~v-~d~~~s~~Fy~~~lG~~~~~~~ 33 (125)
T cd07253 4 IDHVVLTV-ADIEATLDFYTRVLGMEVVRFG 33 (125)
T ss_pred cceEEEEe-cCHHHHHHHHHHHhCceeeccc
Confidence 34555544 344578899987 898887543
No 156
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=51.32 E-value=9.6 Score=20.65 Aligned_cols=39 Identities=3% Similarity=-0.003 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCe
Q 033762 37 DAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 76 (112)
Q Consensus 37 ~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~ 76 (112)
++++.+.+.-| ...--.+++.+.|.|..|+..|.+.--+
T Consensus 3 ~LL~~I~~~~F-a~~dl~LyLDTHP~d~~Al~~y~~~~~~ 41 (78)
T PF12652_consen 3 ELLREIQEVSF-AVVDLNLYLDTHPDDQEALEYYNEYSKQ 41 (78)
T ss_pred HHHHHHHHHhh-HHHHHHHHhcCCCCcHHHHHHHHHHHHH
Confidence 34444444333 1122457899999999999988865433
No 157
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=51.11 E-value=16 Score=20.13 Aligned_cols=17 Identities=18% Similarity=0.423 Sum_probs=13.7
Q ss_pred cHHHHHHHHh-CCCeeec
Q 033762 63 NGASLRLFQK-LGFEDIS 79 (112)
Q Consensus 63 n~~s~~~y~~-~Gf~~~~ 79 (112)
=..|..||++ +||+...
T Consensus 11 l~~s~~FY~~~lG~~~~~ 28 (112)
T cd07238 11 PEAAAAFYADVLGLDVVM 28 (112)
T ss_pred HHHHHHHHHHhcCceEEE
Confidence 3578999997 9999763
No 158
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=50.34 E-value=32 Score=18.81 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=20.2
Q ss_pred cEEEEEeCCccHHHHHHHHh-CCCeeecccc
Q 033762 53 HVFRAKIGESNGASLRLFQK-LGFEDISYSE 82 (112)
Q Consensus 53 ~~l~~~~~~~n~~s~~~y~~-~Gf~~~~~~~ 82 (112)
..+.+.|.. =.+|+.||+. +||+......
T Consensus 4 ~hv~l~v~d-l~~s~~FY~~~LG~~~~~~~~ 33 (138)
T COG0346 4 HHVTLAVPD-LEASIDFYTDVLGLRLVKDTV 33 (138)
T ss_pred EEEEEeeCC-HhHhHHHHHhhcCCeeeeecc
Confidence 444444444 4688999997 9999987543
No 159
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif []. Every member of this family is N-terminal to a SIS domain IPR001347 from INTERPRO. Members of this family are probably regulators of genes involved in phosphosugar metobolism.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2O3F_B 3IWF_B.
Probab=49.50 E-value=3.8 Score=21.84 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=16.6
Q ss_pred cEEEEEeCCccHHHHHHHHhCCCe
Q 033762 53 HVFRAKIGESNGASLRLFQKLGFE 76 (112)
Q Consensus 53 ~~l~~~~~~~n~~s~~~y~~~Gf~ 76 (112)
..+--.+..+...-.+|.+++||.
T Consensus 38 ~elA~~~~vS~sti~Rf~kkLG~~ 61 (77)
T PF01418_consen 38 SELAEKAGVSPSTIVRFCKKLGFS 61 (77)
T ss_dssp HHHHHHCTS-HHHHHHHHHHCTTT
T ss_pred HHHHHHcCCCHHHHHHHHHHhCCC
Confidence 333334555667889999999997
No 160
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=48.62 E-value=14 Score=22.31 Aligned_cols=30 Identities=23% Similarity=0.454 Sum_probs=20.4
Q ss_pred CccEEEEEeCCccHHHHHHHHhCCCeeeccc
Q 033762 51 GIHVFRAKIGESNGASLRLFQKLGFEDISYS 81 (112)
Q Consensus 51 ~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~~ 81 (112)
|+..|...+.. -.++..+++++||+.+++.
T Consensus 9 G~dFvEFa~~~-~~~l~~~~~~lGF~~~a~h 38 (139)
T PF14696_consen 9 GFDFVEFAVPD-AQALAQLFTALGFQPVARH 38 (139)
T ss_dssp EEEEEEEE-SS-TTSCHHHHCCCCEEEECCE
T ss_pred CeEEEEEecCC-HHHHHHHHHHhCcceEEec
Confidence 45556655555 3566678899999999853
No 161
>PF03376 Adeno_E3B: Adenovirus E3B protein; InterPro: IPR005041 Adenoviruses are medium-sized, non-enveloped viruses containing double-stranded DNA. They can cause a variety of diseases including pneumonia, cystitis, conjunctivitis and diarrhoea, all of which can be fatal to patients who are immunocompromised []. These viruses have many mechanisms to evade the host immune response, including several proteins which are expressed as part of the early transcription unit 3 (E3) []. One of the regions of E3, known as the E3B region, encodes three proteins known as 10.4K, 14.5K and 14.7K. Two of these proteins, 10.4K and 14.5K, form the RID complex (receptor internalisation and degradation) which protects the infected cell from host-induced lysis by clearing the the TNF and Fas receptors from the cell surface []. Other receptors, such as the epidermal growth factor receptor, are also known to be cleared by RID []. This entry represents the E3B region 10.4K protein, also known as the RID alpha subunit.; GO: 0016020 membrane
Probab=48.33 E-value=9.3 Score=19.90 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=10.7
Q ss_pred CcccccCcHHHHH
Q 033762 26 EPKSRGKGLAKDA 38 (112)
Q Consensus 26 ~~~~rg~Gig~~l 38 (112)
+|+||++.+++.+
T Consensus 53 hPqYrn~~iA~LL 65 (67)
T PF03376_consen 53 HPQYRNQQIAALL 65 (67)
T ss_pred CchhcCHHHHHHh
Confidence 7999999888754
No 162
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=47.39 E-value=75 Score=20.45 Aligned_cols=47 Identities=15% Similarity=0.310 Sum_probs=31.7
Q ss_pred cccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeeccccc
Q 033762 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEI 83 (112)
Q Consensus 27 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~~~~ 83 (112)
+++|..|+|.+++ +.+|++.|.+.+. |+.-..-.+..|-+.+.+.+.
T Consensus 124 ~D~R~ygigAqIL--------~dLGI~~irLLtn--np~K~~~l~~~Gi~vverv~~ 170 (193)
T COG0807 124 ADERDYGIGAQIL--------KDLGIKKIRLLTN--NPRKIYGLEGFGINVVERVPL 170 (193)
T ss_pred chHHHHHHHHHHH--------HHcCCcEEEEecC--ChHHHHHHHhCCceEEEEeec
Confidence 5566666666553 3668998887765 666677777888777765543
No 163
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=46.66 E-value=72 Score=21.09 Aligned_cols=56 Identities=9% Similarity=0.159 Sum_probs=40.8
Q ss_pred EEEEEEeCcccccCcHHHHHHHHHHHHHHHhc-CccEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 19 EVEIMIAEPKSRGKGLAKDAVLMMMAYAVENF-GIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 19 ~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~-~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
+++.+++ -|.|-.++..+++...+.+ +..++.+-....-..-+++..+++|....+
T Consensus 85 ~~d~ivI------AGMGG~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~~~~~I~~E 141 (226)
T COG2384 85 EIDVIVI------AGMGGTLIREILEEGKEKLKGVERLILQPNIHTYELREWLSANSYEIKAE 141 (226)
T ss_pred CcCEEEE------eCCcHHHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHhCCceeeee
Confidence 3555555 2778888888888776544 456776766666667788999999999875
No 164
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=46.63 E-value=32 Score=19.29 Aligned_cols=27 Identities=7% Similarity=0.365 Sum_probs=17.1
Q ss_pred cEEEEEeCCccHHHHHHHHh-CCCeeecc
Q 033762 53 HVFRAKIGESNGASLRLFQK-LGFEDISY 80 (112)
Q Consensus 53 ~~l~~~~~~~n~~s~~~y~~-~Gf~~~~~ 80 (112)
..+.+.|.. =.+|.+||.+ +||+....
T Consensus 6 ~hv~l~v~D-l~~s~~FY~~~lG~~~~~~ 33 (122)
T cd07265 6 GHVQLRVLD-LEEAIKHYREVLGLDEVGR 33 (122)
T ss_pred eEEEEEeCC-HHHHHHHHHhccCCEeeee
Confidence 344444443 3578899975 89987654
No 165
>PRK10291 glyoxalase I; Provisional
Probab=46.42 E-value=21 Score=20.39 Aligned_cols=17 Identities=18% Similarity=0.393 Sum_probs=13.7
Q ss_pred cHHHHHHHHh-CCCeeec
Q 033762 63 NGASLRLFQK-LGFEDIS 79 (112)
Q Consensus 63 n~~s~~~y~~-~Gf~~~~ 79 (112)
=..|+.||++ +||+...
T Consensus 7 le~s~~FY~~~LG~~~~~ 24 (129)
T PRK10291 7 LQRSIDFYTNVLGMKLLR 24 (129)
T ss_pred HHHHHHHHHhccCCEEEE
Confidence 3588999976 9999865
No 166
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=46.31 E-value=35 Score=21.14 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCccEEEEEeC----CccHHHHHHHHhCCCeeeccc
Q 033762 38 AVLMMMAYAVENFGIHVFRAKIG----ESNGASLRLFQKLGFEDISYS 81 (112)
Q Consensus 38 l~~~~~~~~~~~~~~~~l~~~~~----~~n~~s~~~y~~~Gf~~~~~~ 81 (112)
=+++++++|+ ..|+++|-+..- .+-..-.++++..||+.....
T Consensus 42 RveEiieFak-~mgykkiGiAfCiGL~~EA~~~~~iL~~~gFev~sV~ 88 (157)
T PF08901_consen 42 RVEEIIEFAK-RMGYKKIGIAFCIGLRKEARILAKILEANGFEVYSVC 88 (157)
T ss_pred hHHHHHHHHH-HcCCCeeeehhhHhHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3677888886 789998864322 333455677889999988753
No 167
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=46.09 E-value=21 Score=19.43 Aligned_cols=20 Identities=30% Similarity=0.323 Sum_probs=15.5
Q ss_pred ccHHHHHHHHh-CCCeeeccc
Q 033762 62 SNGASLRLFQK-LGFEDISYS 81 (112)
Q Consensus 62 ~n~~s~~~y~~-~Gf~~~~~~ 81 (112)
+=..|.+||++ +||+.....
T Consensus 8 d~~~s~~FY~~~lg~~~~~~~ 28 (112)
T cd08349 8 DIERSLAFYRDVLGFEVDWEH 28 (112)
T ss_pred CHHHHHHHHHhccCeEEEEEc
Confidence 34588999999 999976543
No 168
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=45.86 E-value=59 Score=20.20 Aligned_cols=31 Identities=16% Similarity=0.313 Sum_probs=17.5
Q ss_pred hcCccEEEEEeCCccHHHHHHHHhCCCeeeccc
Q 033762 49 NFGIHVFRAKIGESNGASLRLFQKLGFEDISYS 81 (112)
Q Consensus 49 ~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~~ 81 (112)
.+|+++|.+.+ +|+.-..-.+.+|-+.++..
T Consensus 137 dLGV~~~rLLt--nnp~k~~~L~g~gleV~~~v 167 (169)
T PF00925_consen 137 DLGVKKMRLLT--NNPRKYVALEGFGLEVVERV 167 (169)
T ss_dssp HTT--SEEEE---S-HHHHHHHHHTT--EEEEE
T ss_pred HcCCCEEEECC--CChhHHHHHhcCCCEEEEEe
Confidence 56888876655 46677777888888777643
No 169
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=45.39 E-value=77 Score=20.12 Aligned_cols=43 Identities=9% Similarity=0.089 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeec
Q 033762 35 AKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (112)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~ 79 (112)
|+.|+...++.+. . .+..+++.++++.+.-..+.++-|++...
T Consensus 26 GkpLI~~v~~al~-~-~~d~i~v~isp~tp~t~~~~~~~gv~vi~ 68 (177)
T COG2266 26 GKPLIDRVLEALR-K-IVDEIIVAISPHTPKTKEYLESVGVKVIE 68 (177)
T ss_pred CccHHHHHHHHHH-h-hcCcEEEEeCCCCHhHHHHHHhcCceEEE
Confidence 5678888888765 3 78899999999999999999999988765
No 170
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=45.38 E-value=77 Score=21.31 Aligned_cols=62 Identities=19% Similarity=0.266 Sum_probs=42.8
Q ss_pred CeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCc---cHHHHHHHHhCCCeeecccc
Q 033762 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES---NGASLRLFQKLGFEDISYSE 82 (112)
Q Consensus 16 ~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~---n~~s~~~y~~~Gf~~~~~~~ 82 (112)
+.+.+-.+++||.+++...+.++- +.+ ++.|+++++...+.- .+.....-..+|....+..+
T Consensus 154 ~~vD~vivVvDpS~~sl~taeri~----~L~-~elg~k~i~~V~NKv~e~e~~~~~~~~~~~~~vlg~iP 218 (255)
T COG3640 154 EGVDLVIVVVDPSYKSLRTAERIK----ELA-EELGIKRIFVVLNKVDEEEELLRELAEELGLEVLGVIP 218 (255)
T ss_pred cCCCEEEEEeCCcHHHHHHHHHHH----HHH-HHhCCceEEEEEeeccchhHHHHhhhhccCCeEEEEcc
Confidence 346778888999999877776653 333 356788887766544 33456677788888777654
No 171
>KOG4387 consensus Ornithine decarboxylase antizyme [Amino acid transport and metabolism]
Probab=45.25 E-value=80 Score=20.15 Aligned_cols=61 Identities=18% Similarity=0.288 Sum_probs=45.1
Q ss_pred EEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccH---HHHHHHHhCCCeeecc
Q 033762 20 VEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNG---ASLRLFQKLGFEDISY 80 (112)
Q Consensus 20 i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~---~s~~~y~~~Gf~~~~~ 80 (112)
.+.++.-|+-.=-+.-++=+-+++++|-+++.+.++.+....++. +-.+-+.=+||+.+.-
T Consensus 102 ~~l~~~IPdq~l~~gsKe~lvalLEfAEekl~~d~Vfi~F~K~R~dr~~LlrtfsyvGFEpvrp 165 (191)
T KOG4387|consen 102 ESLFFEIPDQALDVGSKEGLVALLEFAEEKLHVDKVFICFDKNREDRAALLRTFSYVGFEPVRP 165 (191)
T ss_pred ccEEEecCcchhcccchHhHHHHHHHHHHhhccceEEEEEecCccChHhhhhhehcceeeecCC
Confidence 334444466666677788888999999988999999998887765 3455566688888764
No 172
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=44.68 E-value=35 Score=22.79 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=28.6
Q ss_pred cccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCC
Q 033762 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGE 61 (112)
Q Consensus 27 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~ 61 (112)
+...|.--|...+..++++|. ++|++.+.+.+.+
T Consensus 41 ~~~~GH~~G~~~l~~i~~~c~-~~GI~~vT~yaFS 74 (249)
T PRK14831 41 PRIMGHRRGVDALKDLLRCCK-DWGIGALTAYAFS 74 (249)
T ss_pred chhhhHHHHHHHHHHHHHHHH-HcCCCEEEEeecc
Confidence 445677778899999999998 7899999988887
No 173
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=43.68 E-value=72 Score=21.23 Aligned_cols=44 Identities=14% Similarity=0.046 Sum_probs=31.5
Q ss_pred cCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCC
Q 033762 31 GKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 75 (112)
Q Consensus 31 g~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf 75 (112)
.-|.|+..+...+..+....|.+.+.+.+++.|.....++ .++-
T Consensus 11 KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~~~~~-~l~~ 54 (241)
T PRK13886 11 KGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATFEGYK-ALNV 54 (241)
T ss_pred CCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchhhhHH-hcCC
Confidence 3478888877777766656788888899999997544443 4443
No 174
>cd01027 TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea. RNase M5 catalyzes the maturation of 5S rRNA in low G+C Gram-positive bacteria. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=43.33 E-value=20 Score=19.37 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=18.6
Q ss_pred EEEEEEeCcccccCcHHHHHHHHHH
Q 033762 19 EVEIMIAEPKSRGKGLAKDAVLMMM 43 (112)
Q Consensus 19 ~i~~~~v~~~~rg~Gig~~l~~~~~ 43 (112)
.--.+.+||+..|+.+.+++.+.+-
T Consensus 46 ~~VIiltD~D~aG~~i~~~~~~~l~ 70 (81)
T cd01027 46 RGVIILTDPDRKGEKIRKKLSEYLS 70 (81)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHhc
Confidence 3455677999998888888777663
No 175
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=43.26 E-value=54 Score=18.03 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=18.7
Q ss_pred CccEEEEEeCCccHHHHHHHH-hCCCeeec
Q 033762 51 GIHVFRAKIGESNGASLRLFQ-KLGFEDIS 79 (112)
Q Consensus 51 ~~~~l~~~~~~~n~~s~~~y~-~~Gf~~~~ 79 (112)
++..+.+.|. +=.+|.+||. .+||+...
T Consensus 3 ~~~hi~l~v~-d~~~a~~fy~~~lG~~~~~ 31 (125)
T cd08352 3 GIHHVAIICS-DYEKSKEFYVEILGFKVIR 31 (125)
T ss_pred ccceEEEEcC-CHHHHHHHHHHhcCCEEee
Confidence 4455666554 4457788997 59998754
No 176
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=43.03 E-value=44 Score=18.49 Aligned_cols=27 Identities=7% Similarity=0.215 Sum_probs=17.2
Q ss_pred ccEEEEEeCCccHHHHHHHHh-CCCeeec
Q 033762 52 IHVFRAKIGESNGASLRLFQK-LGFEDIS 79 (112)
Q Consensus 52 ~~~l~~~~~~~n~~s~~~y~~-~Gf~~~~ 79 (112)
+..+.+.+. +=..+.+||++ +||+...
T Consensus 4 i~hv~l~v~-d~~~s~~FY~~~lG~~~~~ 31 (120)
T cd08362 4 LRGVGLGVP-DLAAAAAFYREVWGLSVVA 31 (120)
T ss_pred eeEEEEecC-CHHHHHHHHHhCcCcEEEE
Confidence 344544443 34578888886 8888764
No 177
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=42.66 E-value=49 Score=22.06 Aligned_cols=45 Identities=27% Similarity=0.441 Sum_probs=34.7
Q ss_pred ccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCC
Q 033762 28 KSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 75 (112)
Q Consensus 28 ~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf 75 (112)
.-+| |.|+.-+.+.+.++....|.+.+.+..+|.|- .++.=-+.+
T Consensus 8 s~kG-GvG~TTltAnLA~aL~~~G~~VlaID~dpqN~--Lrlhfg~~~ 52 (243)
T PF06564_consen 8 SPKG-GVGKTTLTANLAWALARLGESVLAIDLDPQNL--LRLHFGLPL 52 (243)
T ss_pred cCCC-CCCHHHHHHHHHHHHHHCCCcEEEEeCCcHHH--HHHhcCCCC
Confidence 3344 99999999999999988999999999999884 444433444
No 178
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=42.63 E-value=43 Score=18.70 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=17.7
Q ss_pred cEEEEEeCCccHHHHHHHHh-CCCeeecc
Q 033762 53 HVFRAKIGESNGASLRLFQK-LGFEDISY 80 (112)
Q Consensus 53 ~~l~~~~~~~n~~s~~~y~~-~Gf~~~~~ 80 (112)
..+.+.+.. =.++.+||.. +||+....
T Consensus 4 ~hi~l~v~d-~~~~~~Fy~~~lG~~~~~~ 31 (125)
T cd07255 4 GAVTLRVAD-LERSLAFYQDVLGLEVLER 31 (125)
T ss_pred EEEEEEECC-HHHHHHHHHhccCcEEEEc
Confidence 445454533 3477889985 89988764
No 179
>cd01274 AIDA-1b AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b is an amyloid-beta precursor protein interacting protein. It consists of ankyrin repeats, a SAM domain and a C-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=42.27 E-value=73 Score=18.85 Aligned_cols=43 Identities=7% Similarity=-0.042 Sum_probs=30.2
Q ss_pred EEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCC
Q 033762 18 AEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGE 61 (112)
Q Consensus 18 ~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~ 61 (112)
-+++.+-| ++.||.....++++.+.....+......+.+.+..
T Consensus 7 kyLGs~eV-~~~~G~~~~~~Am~kik~~~~~~~k~~~V~L~IS~ 49 (127)
T cd01274 7 HYLGSLEI-GELEGTDSTHAAMTKIKESIIDWETIPRVTLDLTC 49 (127)
T ss_pred EccceEEc-cCCCCcHHHHHHHHHHHHhhhccCCCCEEEEEEeC
Confidence 47888888 89999999888888886543211234567666663
No 180
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=41.47 E-value=41 Score=18.90 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=16.2
Q ss_pred EEEEEeCCccHHHHHHHHh-CCCeeec
Q 033762 54 VFRAKIGESNGASLRLFQK-LGFEDIS 79 (112)
Q Consensus 54 ~l~~~~~~~n~~s~~~y~~-~Gf~~~~ 79 (112)
.+.+.|..- .+|.+||+. +||+...
T Consensus 5 ~v~l~v~Dl-~~s~~FY~~~LG~~~~~ 30 (120)
T cd07252 5 YLGVESSDL-DAWRRFATDVLGLQVGD 30 (120)
T ss_pred EEEEEeCCH-HHHHHHHHhccCceecc
Confidence 444444433 468899976 8998754
No 181
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=41.35 E-value=39 Score=20.02 Aligned_cols=28 Identities=18% Similarity=0.344 Sum_probs=18.7
Q ss_pred CccEEEEEeCCccHHHHHHHH-hCCCeeec
Q 033762 51 GIHVFRAKIGESNGASLRLFQ-KLGFEDIS 79 (112)
Q Consensus 51 ~~~~l~~~~~~~n~~s~~~y~-~~Gf~~~~ 79 (112)
++..+.+.+..- .+|..||+ .+||+...
T Consensus 17 ~i~hv~l~v~Dl-~~a~~FY~~vLG~~~~~ 45 (150)
T TIGR00068 17 RLLHTMLRVGDL-DKSLDFYTEVLGMKLLR 45 (150)
T ss_pred eEEEEEEEecCH-HHHHHHHHHhcCCEEEE
Confidence 455565655543 47899997 48998754
No 182
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=41.28 E-value=86 Score=19.81 Aligned_cols=46 Identities=13% Similarity=0.222 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHhcCccEEEEEeCCc-c-HHHHHHHHhCCCeeecc
Q 033762 34 LAKDAVLMMMAYAVENFGIHVFRAKIGES-N-GASLRLFQKLGFEDISY 80 (112)
Q Consensus 34 ig~~l~~~~~~~~~~~~~~~~l~~~~~~~-n-~~s~~~y~~~Gf~~~~~ 80 (112)
.-.++++.+++.++ ..|...+...-.+. + ....+.++..||.....
T Consensus 20 T~P~vv~avv~~l~-~~g~~~i~i~e~~~~~~~~~~~~~~~~G~~~~~~ 67 (206)
T PF04015_consen 20 THPEVVRAVVEMLK-EAGAKEIIIAESPGSGAADTREVFKRSGYEEIAE 67 (206)
T ss_pred CCHHHHHHHHHHHH-HcCCCceEEEeCCCcchHhHHHHHHHcchhhHHH
Confidence 34578999999887 56877555444433 3 57889999999998753
No 183
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=41.26 E-value=55 Score=18.85 Aligned_cols=28 Identities=7% Similarity=0.189 Sum_probs=18.6
Q ss_pred CccEEEEEeCCccHHHHHHHHh-CCCeeec
Q 033762 51 GIHVFRAKIGESNGASLRLFQK-LGFEDIS 79 (112)
Q Consensus 51 ~~~~l~~~~~~~n~~s~~~y~~-~Gf~~~~ 79 (112)
++..+.+.|. +-..|++||+. +||+...
T Consensus 4 ~i~hv~l~V~-dl~~s~~FY~~~lG~~~~~ 32 (131)
T cd08364 4 GLSHITLIVK-DLNKTTAFLQNIFNAREVY 32 (131)
T ss_pred cEeEEEEEeC-CHHHHHHHHHHHhCCeeEE
Confidence 4555655553 45578899976 9997653
No 184
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=41.23 E-value=42 Score=20.28 Aligned_cols=27 Identities=22% Similarity=0.481 Sum_probs=17.3
Q ss_pred ccEEEEEeCCccHHHHHHHHh-CCCeeec
Q 033762 52 IHVFRAKIGESNGASLRLFQK-LGFEDIS 79 (112)
Q Consensus 52 ~~~l~~~~~~~n~~s~~~y~~-~Gf~~~~ 79 (112)
+..+.+.|.. =..|.+||+. +||+...
T Consensus 4 l~Hv~l~V~D-l~~s~~FY~~vLGl~~~~ 31 (161)
T cd07256 4 LDHFNLRVPD-VDAGLAYYRDELGFRVSE 31 (161)
T ss_pred EEEEEEecCC-HHHHHHHHHhccCCEEEE
Confidence 3455555543 3577899977 8997653
No 185
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=41.03 E-value=45 Score=18.47 Aligned_cols=24 Identities=4% Similarity=-0.093 Sum_probs=15.4
Q ss_pred EEEEEeCCccHHHHHHHHh-CCCeee
Q 033762 54 VFRAKIGESNGASLRLFQK-LGFEDI 78 (112)
Q Consensus 54 ~l~~~~~~~n~~s~~~y~~-~Gf~~~ 78 (112)
.+.+.|. +=.+|.+||++ +||+..
T Consensus 4 Hi~l~v~-dl~~s~~FY~~~lg~~~~ 28 (125)
T cd07241 4 HVAIWTK-DLERMKAFYVTYFGATSN 28 (125)
T ss_pred EEEEEec-CHHHHHHHHHHHhCCEee
Confidence 4444444 33577889986 799864
No 186
>PRK10150 beta-D-glucuronidase; Provisional
Probab=40.95 E-value=1.2e+02 Score=22.94 Aligned_cols=64 Identities=19% Similarity=0.116 Sum_probs=45.7
Q ss_pred EEEEEEEeCccc--ccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecccc
Q 033762 18 AEVEIMIAEPKS--RGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (112)
Q Consensus 18 ~~i~~~~v~~~~--rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~~~ 82 (112)
..+.-+..+++. .|..+..+.+..-++.++ +.|++.|.+...|..+....++.++|+-...+.+
T Consensus 292 v~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K-~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p 357 (604)
T PRK10150 292 FYFKGFGKHEDADIRGKGLDEVLNVHDHNLMK-WIGANSFRTSHYPYSEEMLDLADRHGIVVIDETP 357 (604)
T ss_pred EEEEeeeccCCCCccCCcCCHHHHHHHHHHHH-HCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecc
Confidence 344443344443 344455566666677776 7899999998888888999999999999887654
No 187
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=40.92 E-value=1.5e+02 Score=24.50 Aligned_cols=57 Identities=14% Similarity=0.117 Sum_probs=45.2
Q ss_pred CeEEEEEEeecCCCCCeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCc
Q 033762 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (112)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~ 62 (112)
++|++++.+... +.+.++.+--+|+. =+|+...|+..++.+++ +.|+..+.+...|-
T Consensus 432 i~af~s~~p~~~---~g~slDLMRr~pda-pnGvmE~L~~~l~~~~k-~~G~~~~sLg~APl 488 (1094)
T PRK02983 432 VVALLSFVPWGR---RGLSLDLMRRSPDA-PNGVIELMVAELALEAE-SLGITRISLNFAVF 488 (1094)
T ss_pred EEEEEEEeeeCC---CCEEEEecccCCCC-CCCHHHHHHHHHHHHHH-HcCCCEEEechhhh
Confidence 468888887542 34788888888876 57999999999999987 67999998777663
No 188
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=40.78 E-value=29 Score=18.96 Aligned_cols=19 Identities=26% Similarity=0.475 Sum_probs=15.0
Q ss_pred ccHHHHHHHHh-CCCeeecc
Q 033762 62 SNGASLRLFQK-LGFEDISY 80 (112)
Q Consensus 62 ~n~~s~~~y~~-~Gf~~~~~ 80 (112)
+-.++.+||.+ +||+....
T Consensus 8 d~~~~~~fY~~~lG~~~~~~ 27 (119)
T cd07263 8 DQDKALAFYTEKLGFEVRED 27 (119)
T ss_pred CHHHHHHHHHhccCeEEEEe
Confidence 33578999997 99998764
No 189
>PRK11478 putative lyase; Provisional
Probab=40.00 E-value=41 Score=18.93 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=17.4
Q ss_pred ccEEEEEeCCccHHHHHHHH-hCCCeeec
Q 033762 52 IHVFRAKIGESNGASLRLFQ-KLGFEDIS 79 (112)
Q Consensus 52 ~~~l~~~~~~~n~~s~~~y~-~~Gf~~~~ 79 (112)
+..+.+.| ++=.+|.+||. .+||+...
T Consensus 7 i~hv~l~v-~D~~~a~~FY~~~LG~~~~~ 34 (129)
T PRK11478 7 VHHIAIIA-TDYAVSKAFYCDILGFTLQS 34 (129)
T ss_pred ecEEEEEc-CCHHHHHHHHHHHhCCEecc
Confidence 44555544 34457789996 58998753
No 190
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=39.69 E-value=59 Score=18.50 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=12.5
Q ss_pred cHHHHHHHHh-CCCeeecc
Q 033762 63 NGASLRLFQK-LGFEDISY 80 (112)
Q Consensus 63 n~~s~~~y~~-~Gf~~~~~ 80 (112)
=.++.+||++ +||+....
T Consensus 12 ~~~s~~FY~~~lG~~~~~~ 30 (134)
T cd08348 12 LEAMVRFYRDVLGFTVTDR 30 (134)
T ss_pred HHHHHHHHHHhcCCEEEee
Confidence 3467888876 88887543
No 191
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=39.07 E-value=49 Score=21.81 Aligned_cols=35 Identities=11% Similarity=0.309 Sum_probs=29.2
Q ss_pred cccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCc
Q 033762 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (112)
Q Consensus 27 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~ 62 (112)
|...|.--|...+..++++|. ++|++.+++.+.+.
T Consensus 20 ~~~~GH~~G~~~~~~v~~~c~-~~GI~~lT~yaFSt 54 (226)
T TIGR00055 20 PRAYGHKAGVKSLRRILRWCA-NLGVECLTLYAFST 54 (226)
T ss_pred ChhHhHHHHHHHHHHHHHHHH-HcCCCEEEEEEeeh
Confidence 556677789999999999997 78999998877654
No 192
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=38.88 E-value=47 Score=21.96 Aligned_cols=35 Identities=9% Similarity=0.076 Sum_probs=28.8
Q ss_pred cccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCc
Q 033762 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (112)
Q Consensus 27 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~ 62 (112)
|...|.--|...+..++++|. ++|++.+++.+.+.
T Consensus 27 ~~~~GH~~G~~~~~~i~~~c~-~~GI~~lT~YaFS~ 61 (230)
T PRK14837 27 SFFEGHKEGLKRAKEIVKHSL-KLGIKYLSLYVFST 61 (230)
T ss_pred chhhhHHHHHHHHHHHHHHHH-HcCCCEEEEEEeeh
Confidence 556677779999999999997 78999988877654
No 193
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=38.57 E-value=50 Score=18.38 Aligned_cols=27 Identities=11% Similarity=0.239 Sum_probs=17.6
Q ss_pred ccEEEEEeCCccHHHHHHHHh-CCCeeec
Q 033762 52 IHVFRAKIGESNGASLRLFQK-LGFEDIS 79 (112)
Q Consensus 52 ~~~l~~~~~~~n~~s~~~y~~-~Gf~~~~ 79 (112)
+..+.+.|. +=..+.+||.+ +||+...
T Consensus 5 i~hi~l~v~-d~~~~~~Fy~~~lG~~~~~ 32 (121)
T cd07266 5 LGHVELRVT-DLEKSREFYVDVLGLVETE 32 (121)
T ss_pred eeEEEEEcC-CHHHHHHHHHhccCCEEec
Confidence 344555553 34578889976 8998754
No 194
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=38.31 E-value=1.1e+02 Score=19.52 Aligned_cols=45 Identities=20% Similarity=0.364 Sum_probs=30.0
Q ss_pred cccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeeccc
Q 033762 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYS 81 (112)
Q Consensus 27 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~~ 81 (112)
+++|.-|+|.+++ +.+|++++.+.+. |..-..-.+.+|-+.++..
T Consensus 122 ~d~R~yGiGAQIL--------~dLGV~~~rLLtn--~~~k~~~L~g~gleVv~~~ 166 (191)
T TIGR00505 122 ADERDFSLCADIL--------EDLGVKKVRLLTN--NPKKIEILKKAGINIVERV 166 (191)
T ss_pred ccceehhHHHHHH--------HHcCCCEEEECCC--CHHHHHHHHhCCCEEEEEe
Confidence 3477777777763 3568998877665 4444555667787777654
No 195
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=37.50 E-value=54 Score=18.21 Aligned_cols=26 Identities=12% Similarity=0.233 Sum_probs=18.1
Q ss_pred EEEEEeCCccHHHHHHHHh-CCCeeecc
Q 033762 54 VFRAKIGESNGASLRLFQK-LGFEDISY 80 (112)
Q Consensus 54 ~l~~~~~~~n~~s~~~y~~-~Gf~~~~~ 80 (112)
.+.+.|. +=.++.+||++ +||+....
T Consensus 3 hv~l~v~-d~~~~~~fy~~~lG~~~~~~ 29 (128)
T cd07249 3 HIGIAVP-DLEAAIKFYRDVLGVGPWEE 29 (128)
T ss_pred EEEEEeC-CHHHHHHHHHHhhCCCCccc
Confidence 4445553 34578999987 99998754
No 196
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=37.39 E-value=36 Score=18.71 Aligned_cols=19 Identities=16% Similarity=0.357 Sum_probs=15.6
Q ss_pred ccHHHHHHHHh-CCCeeecc
Q 033762 62 SNGASLRLFQK-LGFEDISY 80 (112)
Q Consensus 62 ~n~~s~~~y~~-~Gf~~~~~ 80 (112)
+=.++.+||++ +||+....
T Consensus 12 d~~~~~~FY~~~lg~~~~~~ 31 (117)
T cd07240 12 DLERALEFYTDVLGLTVLDR 31 (117)
T ss_pred CHHHHHHHHHhccCcEEEee
Confidence 44688999998 99998764
No 197
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=37.26 E-value=42 Score=17.66 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=16.1
Q ss_pred CccHHHHHHHHh-CCCeeeccc
Q 033762 61 ESNGASLRLFQK-LGFEDISYS 81 (112)
Q Consensus 61 ~~n~~s~~~y~~-~Gf~~~~~~ 81 (112)
++-..+.+||.+ +||+.....
T Consensus 7 ~d~~~~~~fy~~~lg~~~~~~~ 28 (112)
T cd06587 7 SDLEAAVAFYEEVLGFEVLFRN 28 (112)
T ss_pred CCHHHHHHHHHhccCCEEEEee
Confidence 345688999997 999987654
No 198
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=37.25 E-value=40 Score=18.74 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=12.8
Q ss_pred cHHHHHHHHh-CCCeeec
Q 033762 63 NGASLRLFQK-LGFEDIS 79 (112)
Q Consensus 63 n~~s~~~y~~-~Gf~~~~ 79 (112)
=.+|++||++ +||+...
T Consensus 10 l~~s~~FY~~~lG~~~~~ 27 (125)
T cd08357 10 LEAARAFYGDVLGCKEGR 27 (125)
T ss_pred HHHHHHHHHHhcCCEEee
Confidence 4578899974 8998754
No 199
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=37.19 E-value=68 Score=17.86 Aligned_cols=20 Identities=10% Similarity=0.242 Sum_probs=13.5
Q ss_pred CccHHHHHHHHh----CCCeeecc
Q 033762 61 ESNGASLRLFQK----LGFEDISY 80 (112)
Q Consensus 61 ~~n~~s~~~y~~----~Gf~~~~~ 80 (112)
++=.+|.+||++ +||.....
T Consensus 9 ~d~~~s~~FY~~~f~~lg~~~~~~ 32 (123)
T cd07262 9 NDLERARAFYDAVLAPLGIKRVME 32 (123)
T ss_pred CcHHHHHHHHHHHHhhcCceEEee
Confidence 344577888887 58887643
No 200
>COG3543 Uncharacterized conserved protein [Function unknown]
Probab=37.17 E-value=71 Score=19.23 Aligned_cols=37 Identities=19% Similarity=0.033 Sum_probs=25.6
Q ss_pred cccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCcc
Q 033762 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESN 63 (112)
Q Consensus 27 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n 63 (112)
..|+|+||....++.+-+.+.+-..-..|.+...+++
T Consensus 14 q~y~GkGYS~~FveN~d~I~~rL~~ge~i~lV~g~DD 50 (135)
T COG3543 14 QGYQGKGYSPAFVENYDAIAERLKAGEDIKLVDGPDD 50 (135)
T ss_pred eecccccCCHHHHHHHHHHHHHhhcCCCeEEEecccc
Confidence 6899999999998888777663333344655555554
No 201
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=37.04 E-value=50 Score=18.38 Aligned_cols=18 Identities=22% Similarity=0.523 Sum_probs=14.0
Q ss_pred ccHHHHHHHHh-CCCeeec
Q 033762 62 SNGASLRLFQK-LGFEDIS 79 (112)
Q Consensus 62 ~n~~s~~~y~~-~Gf~~~~ 79 (112)
+=.+|.+||++ +||+...
T Consensus 10 D~~~s~~FY~~~lG~~~~~ 28 (125)
T cd07264 10 DVEKTLEFYERAFGFERRF 28 (125)
T ss_pred CHHHHHHHHHHhhCCeEEe
Confidence 44688999987 8998753
No 202
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=36.77 E-value=60 Score=19.64 Aligned_cols=28 Identities=18% Similarity=0.439 Sum_probs=17.7
Q ss_pred ccEEEEEeCCccHHHHHHHHh-CCCeeecc
Q 033762 52 IHVFRAKIGESNGASLRLFQK-LGFEDISY 80 (112)
Q Consensus 52 ~~~l~~~~~~~n~~s~~~y~~-~Gf~~~~~ 80 (112)
+..+.+.|..- ..|.+||++ +||+....
T Consensus 2 l~HI~i~V~Dl-e~s~~FY~~~LG~~~~~~ 30 (157)
T cd08347 2 LHGVTLTVRDP-EATAAFLTDVLGFREVGE 30 (157)
T ss_pred cccEEEEeCCH-HHHHHHHHHhcCCEEEee
Confidence 34454444333 578999965 69987654
No 203
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=35.91 E-value=19 Score=18.16 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=6.5
Q ss_pred cHHHHHHHHHHHHHH
Q 033762 33 GLAKDAVLMMMAYAV 47 (112)
Q Consensus 33 Gig~~l~~~~~~~~~ 47 (112)
||-+.++..+++.-|
T Consensus 7 Gi~~~lVd~F~~mGF 21 (55)
T PF09288_consen 7 GIDKDLVDQFENMGF 21 (55)
T ss_dssp --SHHHHHHHHHHT-
T ss_pred CCCHHHHHHHHHcCC
Confidence 555555555555444
No 204
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=34.93 E-value=1.4e+02 Score=21.07 Aligned_cols=26 Identities=12% Similarity=0.336 Sum_probs=21.4
Q ss_pred EEEEEeCCccHHHHHHHHhCCCeeec
Q 033762 54 VFRAKIGESNGASLRLFQKLGFEDIS 79 (112)
Q Consensus 54 ~l~~~~~~~n~~s~~~y~~~Gf~~~~ 79 (112)
++..-+...|....+||.++|.+++-
T Consensus 117 h~S~q~~v~N~~~~~f~~~~G~~rvV 142 (347)
T COG0826 117 HVSTQANVTNAETAKFWKELGAKRVV 142 (347)
T ss_pred EEeeeEecCCHHHHHHHHHcCCEEEE
Confidence 44566778899999999999988874
No 205
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=34.93 E-value=1.1e+02 Score=19.75 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=19.1
Q ss_pred EEeCCccHHHHHHHHhCCCeeec
Q 033762 57 AKIGESNGASLRLFQKLGFEDIS 79 (112)
Q Consensus 57 ~~~~~~n~~s~~~y~~~Gf~~~~ 79 (112)
......|..+.+||+.+|+..+-
T Consensus 43 ~~~nv~N~~s~~~~~~~G~~~i~ 65 (233)
T PF01136_consen 43 YSLNVFNSESARFLKELGASRIT 65 (233)
T ss_pred cCccCCCHHHHHHHHHcCCCEEE
Confidence 44557899999999999998764
No 206
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=34.83 E-value=62 Score=21.42 Aligned_cols=35 Identities=14% Similarity=0.306 Sum_probs=28.9
Q ss_pred cccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCc
Q 033762 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (112)
Q Consensus 27 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~ 62 (112)
|...|.--|...+..+++++. ++|++.+++.+.+.
T Consensus 24 ~~~~GH~~G~~~l~~i~~~~~-~lgIk~lTvYaFS~ 58 (233)
T PRK14841 24 PRIKGHQRGAEVLHNTVKWSL-ELGIKYLTAFSFST 58 (233)
T ss_pred chhhhHHHHHHHHHHHHHHHH-HcCCCEEEEEeeeH
Confidence 556677789999999999998 78999998877654
No 207
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=34.80 E-value=80 Score=17.67 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=17.0
Q ss_pred cEEEEEeCCccHHHHHHHHhC----CCeeecc
Q 033762 53 HVFRAKIGESNGASLRLFQKL----GFEDISY 80 (112)
Q Consensus 53 ~~l~~~~~~~n~~s~~~y~~~----Gf~~~~~ 80 (112)
..+.+.+. +=.++.+||++. ||+....
T Consensus 3 ~Hv~i~v~-d~~~~~~Fy~~~l~~~G~~~~~~ 33 (128)
T cd07242 3 HHVELTVR-DLERSRAFYDWLLGLLGFEEVKE 33 (128)
T ss_pred ceEEEEeC-CHHHHHHHHHHHHhhcCCEEEEe
Confidence 44544443 345778888875 8887653
No 208
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=34.74 E-value=55 Score=22.78 Aligned_cols=33 Identities=9% Similarity=0.259 Sum_probs=27.5
Q ss_pred EEEEeCcccccCcHHHHHHHHHHHHHHHhcCcc
Q 033762 21 EIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIH 53 (112)
Q Consensus 21 ~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~ 53 (112)
..++|+..++.-|+|.++...+.+.++..+...
T Consensus 254 R~viV~Ea~~~~g~gaei~A~i~e~~f~~LdAP 286 (324)
T COG0022 254 RLVIVHEAPKTGGIGAEIAALIAEEAFDYLDAP 286 (324)
T ss_pred cEEEEEeccccCChHHHHHHHHHHHHHHhhcCc
Confidence 356778999999999999999999999766544
No 209
>PRK06724 hypothetical protein; Provisional
Probab=34.44 E-value=70 Score=18.59 Aligned_cols=27 Identities=19% Similarity=0.493 Sum_probs=19.1
Q ss_pred CccEEEEEeCCccHHHHHHHHh----CCCeee
Q 033762 51 GIHVFRAKIGESNGASLRLFQK----LGFEDI 78 (112)
Q Consensus 51 ~~~~l~~~~~~~n~~s~~~y~~----~Gf~~~ 78 (112)
++..+.+.|..- .+|.+||++ +||+..
T Consensus 7 ~i~Hv~l~V~Dl-e~s~~FY~~vlg~lg~~~~ 37 (128)
T PRK06724 7 GIHHIEFWVANL-EESISFYDMLFSIIGWRKL 37 (128)
T ss_pred ccCEEEEEeCCH-HHHHHHHHHHHhhCCcEEe
Confidence 566777777554 477899987 688764
No 210
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=34.34 E-value=66 Score=21.44 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=28.7
Q ss_pred cccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCc
Q 033762 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (112)
Q Consensus 27 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~ 62 (112)
|...|.--|..-+..++++|. ++|++.+++.+.+.
T Consensus 29 ~~~~GH~~G~~~l~~i~~~c~-~lgI~~vTvYaFS~ 63 (241)
T PRK14842 29 KRSEGHREGANAIDRLMDASL-EYGLKNISLYAFST 63 (241)
T ss_pred ChhHhHHHHHHHHHHHHHHHH-HcCCCEEEEEEeeh
Confidence 556677788899999999998 78999998877654
No 211
>PRK13913 3-methyladenine DNA glycosylase; Provisional
Probab=34.05 E-value=60 Score=21.24 Aligned_cols=39 Identities=26% Similarity=0.369 Sum_probs=29.4
Q ss_pred cCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCee
Q 033762 31 GKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 77 (112)
Q Consensus 31 g~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~ 77 (112)
=+|||.+....++-+++ +.+. .+-++-..++..++|+..
T Consensus 126 l~GIG~kTAd~iLlya~---~rp~-----fvVDty~~Rv~~RlG~~~ 164 (218)
T PRK13913 126 QKGIGKESADAILCYVC---AKEV-----MVVDKYSYLFLKKLGIEI 164 (218)
T ss_pred CCCccHHHHHHHHHHHc---CCCc-----cccchhHHHHHHHcCCCC
Confidence 36999999999999876 3332 334556789999999964
No 212
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=34.03 E-value=66 Score=21.11 Aligned_cols=35 Identities=6% Similarity=0.185 Sum_probs=28.6
Q ss_pred cccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCc
Q 033762 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (112)
Q Consensus 27 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~ 62 (112)
|...|.--|...+..++++|. ++|++.+++.+.+.
T Consensus 21 ~~~~GH~~G~~~~~~i~~~~~-~~gI~~lTvyaFS~ 55 (221)
T cd00475 21 DRIEGHKAGAEKLRDILRWCL-ELGVKEVTLYAFST 55 (221)
T ss_pred ChhHhHHHHHHHHHHHHHHHH-HcCCCEEEEEeech
Confidence 556677788999999999997 77999998877643
No 213
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=33.95 E-value=45 Score=18.65 Aligned_cols=19 Identities=21% Similarity=0.420 Sum_probs=15.4
Q ss_pred ccHHHHHHHH-hCCCeeecc
Q 033762 62 SNGASLRLFQ-KLGFEDISY 80 (112)
Q Consensus 62 ~n~~s~~~y~-~~Gf~~~~~ 80 (112)
+=.+|.+||+ .+||+....
T Consensus 9 d~~~a~~FY~~~lG~~~~~~ 28 (122)
T cd08355 9 DAAAAIDWLTDAFGFEERLV 28 (122)
T ss_pred CHHHHHHHHHHhcCCEEEEE
Confidence 4468999998 999998753
No 214
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=33.65 E-value=97 Score=20.85 Aligned_cols=38 Identities=21% Similarity=0.262 Sum_probs=33.1
Q ss_pred CcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCcc
Q 033762 26 EPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESN 63 (112)
Q Consensus 26 ~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n 63 (112)
-|.|--.|+++..++....++..++|-+.+.++..+.-
T Consensus 152 vPnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaISAG 189 (259)
T COG0623 152 VPNYNVMGVAKAALEASVRYLAADLGKEGIRVNAISAG 189 (259)
T ss_pred cCCCchhHHHHHHHHHHHHHHHHHhCccCeEEeeeccc
Confidence 49999999999999999999988899888887766553
No 215
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=33.62 E-value=2.4e+02 Score=22.54 Aligned_cols=62 Identities=13% Similarity=0.051 Sum_probs=46.7
Q ss_pred EEEEEEEeCcc--cccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 18 AEVEIMIAEPK--SRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 18 ~~i~~~~v~~~--~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
..+.-+--+++ .+|++....++..-+..++ +.|.+.+.+.-.+.++--..++.++|+-...+
T Consensus 300 vf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk-~~n~N~vRtsHyP~~~~~ydLcDelGllV~~E 363 (808)
T COG3250 300 VFIRGVNRHEDDPILGRVTDEDAMERDLKLMK-EANMNSVRTSHYPNSEEFYDLCDELGLLVIDE 363 (808)
T ss_pred EEEeeeecccCCCccccccCHHHHHHHHHHHH-HcCCCEEEecCCCCCHHHHHHHHHhCcEEEEe
Confidence 34444444444 4566666677777788786 67999999999999999999999999998874
No 216
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=33.47 E-value=1.3e+02 Score=19.21 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=30.4
Q ss_pred cccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeeccc
Q 033762 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYS 81 (112)
Q Consensus 27 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~~ 81 (112)
+++|.-|+|.++++ .+|++++.+.+. |..-..-...+|.+.++..
T Consensus 125 ~d~R~yGiGAQIL~--------dLGV~~mrLLtn--~~~k~~~L~g~GleV~~~~ 169 (197)
T PRK00393 125 ADERDYTLAADMLK--------ALGVKKVRLLTN--NPKKVEALTEAGINIVERV 169 (197)
T ss_pred ccceehhHHHHHHH--------HcCCCEEEECCC--CHHHHHHHHhCCCEEEEEe
Confidence 45788888877742 568998876665 4444555567888887644
No 217
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=33.35 E-value=95 Score=18.54 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=19.8
Q ss_pred cCccEEEEEeCCccHHHHHHHHh-CCCeeec
Q 033762 50 FGIHVFRAKIGESNGASLRLFQK-LGFEDIS 79 (112)
Q Consensus 50 ~~~~~l~~~~~~~n~~s~~~y~~-~Gf~~~~ 79 (112)
.++..+.+.|. +=.+|++||+. +||+...
T Consensus 8 ~~l~Hi~l~v~-Dl~~a~~FY~~~LGl~~~~ 37 (154)
T cd07237 8 QGLGHVVLATP-DPDEAHAFYRDVLGFRLSD 37 (154)
T ss_pred CccCEEEEEeC-CHHHHHHHHHHccCCEEEE
Confidence 35566666664 44578899975 9998654
No 218
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=33.26 E-value=59 Score=21.47 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=28.4
Q ss_pred cccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCc
Q 033762 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (112)
Q Consensus 27 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~ 62 (112)
+...|.--|...+..++++|. ++|++.+++.+.+.
T Consensus 14 ~~~~GH~~G~~~l~~i~~~c~-~~GI~~lT~yaFS~ 48 (229)
T PRK10240 14 IRAFGHKAGAKSVRRAVSFAA-NNGIEALTLYAFSS 48 (229)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEeeeh
Confidence 455667778899999999997 78999998877654
No 219
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=33.17 E-value=2.2e+02 Score=21.69 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=24.7
Q ss_pred HhcCccEEEEEeCCccHHHHHHHHhCCCeeecccc
Q 033762 48 ENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (112)
Q Consensus 48 ~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~~~ 82 (112)
+.+|+++|.+.+ +|+.-+.-.+.+|.+.+++.+
T Consensus 347 ~dLGI~kIrLLT--NNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 347 NDLGIKRLRLIT--NNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred HHcCCCEEEECC--CCHHHHHHHHhCCCEEEEEec
Confidence 366888886655 477777778899999887654
No 220
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=32.76 E-value=63 Score=21.52 Aligned_cols=33 Identities=12% Similarity=0.171 Sum_probs=27.4
Q ss_pred cccccCcHHHHHHHHHHHHHHHhcCccEEEEEeC
Q 033762 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIG 60 (112)
Q Consensus 27 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~ 60 (112)
+...|.--|...+..++++|. ++|++.+++.+.
T Consensus 35 ~~~~GH~~G~~~l~~iv~~c~-~~gI~~vTvYaF 67 (243)
T PRK14829 35 KRTEGHKAGEPVLFDVVAGAI-EAGVPYLSLYTF 67 (243)
T ss_pred ChhHHHHHHHHHHHHHHHHHH-HcCCCEEEEeee
Confidence 445566778899999999998 789999988877
No 221
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=32.50 E-value=75 Score=21.04 Aligned_cols=35 Identities=6% Similarity=0.105 Sum_probs=28.2
Q ss_pred cccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCc
Q 033762 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (112)
Q Consensus 27 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~ 62 (112)
|...|.--|...+..++++|. ++|++.+.+.+.+.
T Consensus 25 ~~~~GH~~G~~~l~~~~~~c~-~~gI~~lTvyaFS~ 59 (233)
T PRK14833 25 ARAAGHKKGVKTLREITIWCA-NHKLECLTLYAFST 59 (233)
T ss_pred ChhhhHHHHHHHHHHHHHHHH-HcCCCEEEEeecch
Confidence 445567778899999999997 78999998877654
No 222
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=32.38 E-value=1.2e+02 Score=18.31 Aligned_cols=44 Identities=20% Similarity=0.144 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhcCccEEEEEeC-----------CccHHHHHHHHhCCCeeec
Q 033762 35 AKDAVLMMMAYAVENFGIHVFRAKIG-----------ESNGASLRLFQKLGFEDIS 79 (112)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~l~~~~~-----------~~n~~s~~~y~~~Gf~~~~ 79 (112)
++.+.+.+.+.+. ++|++.+.+.+. +..+.+++-.++.|++...
T Consensus 55 Aq~aae~~~~~~~-~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~ 109 (132)
T PRK09607 55 AMQAAEKAAEDAK-EKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 109 (132)
T ss_pred HHHHHHHHHHHHH-HcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEE
Confidence 3456666667776 679998877664 4677899999999999774
No 223
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=32.32 E-value=1.1e+02 Score=17.92 Aligned_cols=44 Identities=20% Similarity=0.150 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHhcCccEEEEEeC-----------CccHHHHHHHHhCCCeeec
Q 033762 35 AKDAVLMMMAYAVENFGIHVFRAKIG-----------ESNGASLRLFQKLGFEDIS 79 (112)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~l~~~~~-----------~~n~~s~~~y~~~Gf~~~~ 79 (112)
++.+.+.+.+.+. ++|++.+.+.+. +..+.+++-.++.|++...
T Consensus 48 Aq~aa~~~~~~~~-~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~ 102 (114)
T TIGR03628 48 AMQAAGRAAEKAK-ERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 102 (114)
T ss_pred HHHHHHHHHHHHH-HcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEE
Confidence 4456667777776 679998877763 4678999999999999774
No 224
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=32.22 E-value=78 Score=17.65 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=17.0
Q ss_pred ccEEEEEeCCccHHHHHHHHh-CCCeeecc
Q 033762 52 IHVFRAKIGESNGASLRLFQK-LGFEDISY 80 (112)
Q Consensus 52 ~~~l~~~~~~~n~~s~~~y~~-~Gf~~~~~ 80 (112)
+..+.+.|.. =.+|.+||++ +||+....
T Consensus 7 i~hv~l~v~d-l~~a~~FY~~~lG~~~~~~ 35 (121)
T cd09013 7 LAHVELLTPK-PEESLWFFTDVLGLEETGR 35 (121)
T ss_pred eeEEEEEeCC-HHHHHHHHHhCcCCEEEee
Confidence 3444444432 3577888876 68887654
No 225
>PRK04017 hypothetical protein; Provisional
Probab=31.65 E-value=52 Score=19.78 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=17.1
Q ss_pred EEEEEeCcccccCcHHHHHHHHHH
Q 033762 20 VEIMIAEPKSRGKGLAKDAVLMMM 43 (112)
Q Consensus 20 i~~~~v~~~~rg~Gig~~l~~~~~ 43 (112)
--.+.+||++.|.-+.+.+.+.+.
T Consensus 67 ~VIILTD~D~~GekIr~~l~~~l~ 90 (132)
T PRK04017 67 EVIILTDFDRKGEELAKKLSEYLQ 90 (132)
T ss_pred eEEEEECCCcchHHHHHHHHHHHH
Confidence 445667999998877777655553
No 226
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=31.53 E-value=51 Score=21.50 Aligned_cols=34 Identities=15% Similarity=0.349 Sum_probs=26.5
Q ss_pred cccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCC
Q 033762 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGE 61 (112)
Q Consensus 27 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~ 61 (112)
|...|..-|...+..+++++. ..|++.+.+.+.+
T Consensus 15 ~~~~Gh~~G~~~l~~i~~~~~-~~gI~~lTvYaFS 48 (223)
T PF01255_consen 15 PRSEGHRAGAEKLKEIVEWCL-ELGIKYLTVYAFS 48 (223)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH-HCT-SEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEEec
Confidence 345566678889999999998 7799999888765
No 227
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=31.46 E-value=45 Score=18.99 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=17.2
Q ss_pred EEEEEeCCccHHHHHHHHh-CCCeeecc
Q 033762 54 VFRAKIGESNGASLRLFQK-LGFEDISY 80 (112)
Q Consensus 54 ~l~~~~~~~n~~s~~~y~~-~Gf~~~~~ 80 (112)
.+.+.+. +=..|.+||++ +||+...+
T Consensus 9 ~v~l~v~-d~~~s~~FY~~vLG~~~~~~ 35 (124)
T cd08361 9 YVRLGTR-DLAGATRFATDILGLQVAER 35 (124)
T ss_pred EEEEeeC-CHHHHHHHHHhccCceeccC
Confidence 4444444 33578999987 79997543
No 228
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=31.41 E-value=84 Score=18.52 Aligned_cols=28 Identities=14% Similarity=0.116 Sum_probs=18.1
Q ss_pred ccEEEEEeCCccHHHHHHHHh-CCCeeecc
Q 033762 52 IHVFRAKIGESNGASLRLFQK-LGFEDISY 80 (112)
Q Consensus 52 ~~~l~~~~~~~n~~s~~~y~~-~Gf~~~~~ 80 (112)
+..+.+.|..- .+|.+||++ +||+...+
T Consensus 7 l~Hv~l~v~Dl-e~s~~FY~~vLGf~~~~~ 35 (143)
T cd07243 7 LDHCLLTGEDI-AETTRFFTDVLDFYLAER 35 (143)
T ss_pred eCEEEEecCCH-HHHHHHHHHhcCCEEEEE
Confidence 34555555433 578899976 99986543
No 229
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=31.24 E-value=66 Score=21.63 Aligned_cols=35 Identities=14% Similarity=0.276 Sum_probs=28.0
Q ss_pred cccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCc
Q 033762 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (112)
Q Consensus 27 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~ 62 (112)
|...|.--|...+..++++|. ++|++.+++.+.+.
T Consensus 39 ~~~~GH~~G~~~l~~i~~~c~-~~gI~~lTvyaFS~ 73 (253)
T PRK14832 39 PRIAGHRQGARTLKELLRCCK-DWGIKALTAYAFST 73 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEEeeh
Confidence 455666678899999999998 78999988877654
No 230
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=31.21 E-value=51 Score=18.15 Aligned_cols=19 Identities=16% Similarity=0.504 Sum_probs=14.7
Q ss_pred ccHHHHHHHH-hCCCeeecc
Q 033762 62 SNGASLRLFQ-KLGFEDISY 80 (112)
Q Consensus 62 ~n~~s~~~y~-~~Gf~~~~~ 80 (112)
+=..|.+||. .+||+....
T Consensus 11 d~~~a~~FY~~~lG~~~~~~ 30 (122)
T cd07246 11 DAAAAIDFYKKAFGAEELER 30 (122)
T ss_pred CHHHHHHHHHHhhCCEEEEE
Confidence 4468899998 599998753
No 231
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=31.01 E-value=72 Score=21.40 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=27.6
Q ss_pred cccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCc
Q 033762 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (112)
Q Consensus 27 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~ 62 (112)
+...|.--|...+..++++|. ++|++.+++.+.+.
T Consensus 43 ~~~~GH~~G~~~l~~v~~~c~-~~GIk~lTvYaFS~ 77 (250)
T PRK14840 43 RAISGHYYGAKSLPQIVDTAL-HLGIEVLTLFAFST 77 (250)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEEeeh
Confidence 344556668899999999998 77999998877654
No 232
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=30.82 E-value=84 Score=21.06 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=27.7
Q ss_pred cccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCc
Q 033762 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (112)
Q Consensus 27 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~ 62 (112)
+...|.--|..-+..++++|. ++|++.+.+.+.+.
T Consensus 35 ~~~~GH~~G~~~l~~i~~~c~-~lgI~~lTvYaFS~ 69 (249)
T PRK14834 35 PRAAGHRAGVEALRRVVRAAG-ELGIGYLTLFAFSS 69 (249)
T ss_pred chhhhHHHHHHHHHHHHHHHH-HcCCCEEEEEEEec
Confidence 344466678899999999997 78999998887654
No 233
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=29.99 E-value=86 Score=17.38 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=11.4
Q ss_pred HHHHHHHH-hCCCeeecc
Q 033762 64 GASLRLFQ-KLGFEDISY 80 (112)
Q Consensus 64 ~~s~~~y~-~~Gf~~~~~ 80 (112)
..|.+||. .+||+....
T Consensus 13 ~~a~~FY~~~lG~~~~~~ 30 (120)
T cd07254 13 EASIAFYSKLFGVEPTKV 30 (120)
T ss_pred HHHHHHHHHHhCCeEecc
Confidence 57788886 458876543
No 234
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=29.95 E-value=1.8e+02 Score=20.03 Aligned_cols=63 Identities=8% Similarity=-0.118 Sum_probs=35.9
Q ss_pred EEEEEEeCcccccC-cH----HHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecccc
Q 033762 19 EVEIMIAEPKSRGK-GL----AKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (112)
Q Consensus 19 ~i~~~~v~~~~rg~-Gi----g~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~~~ 82 (112)
..+.++.+|-|-.. +. ...+...+++.+.+.+.-....+.+.+.+.....+.++.|| ..+...
T Consensus 248 ~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~~~~~~g~-i~~~~~ 315 (329)
T TIGR01177 248 SVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLESLAEDAFR-VVKRFE 315 (329)
T ss_pred CCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHHHHHhhcCc-chheee
Confidence 46777878776432 11 22445555655554442222233445555566788999999 776443
No 235
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=29.88 E-value=1.3e+02 Score=21.28 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=28.7
Q ss_pred CeEEEEEEEeCcccccCcHHHHHHHHHHHHHH
Q 033762 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAV 47 (112)
Q Consensus 16 ~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~ 47 (112)
.++++..++++.+.|++.+.--|+.++-..+.
T Consensus 164 ~~~evNFLCihk~lRsKRltPvLIkEiTRR~n 195 (451)
T COG5092 164 SVLEVNFLCIHKELRSKRLTPVLIKEITRRAN 195 (451)
T ss_pred ccceEEEEEEehhhhhCccchHHHHHHHHhhh
Confidence 57899999999999999999999998887764
No 236
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=29.70 E-value=92 Score=17.91 Aligned_cols=27 Identities=15% Similarity=0.130 Sum_probs=16.7
Q ss_pred cEEEEEeCCccHHHHHHHHh-CCCeeecc
Q 033762 53 HVFRAKIGESNGASLRLFQK-LGFEDISY 80 (112)
Q Consensus 53 ~~l~~~~~~~n~~s~~~y~~-~Gf~~~~~ 80 (112)
..+.+.|. +=..|.+||++ +||+....
T Consensus 5 ~hi~l~v~-dl~~s~~FY~~vlGl~~~~~ 32 (134)
T cd08360 5 GHVVLFVP-DVEAAEAFYRDRLGFRVSDR 32 (134)
T ss_pred eEEEEEcC-CHHHHHHHHHHhcCCEEEEE
Confidence 34444443 34577889965 79987653
No 237
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=29.55 E-value=77 Score=22.17 Aligned_cols=35 Identities=9% Similarity=0.160 Sum_probs=28.4
Q ss_pred cccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCc
Q 033762 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (112)
Q Consensus 27 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~ 62 (112)
|...|.-.|.+.+..++++|. ++|++.+.+.+.+.
T Consensus 40 ~~~~GH~~G~~~l~~il~~c~-~lGIk~lTlYAFSt 74 (322)
T PTZ00349 40 HSAIGHFMGSKALIQIIEICI-KLKIKILSVFSFSL 74 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEEeeh
Confidence 445577788999999999998 78999988877643
No 238
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=29.46 E-value=80 Score=21.06 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=28.3
Q ss_pred cccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCc
Q 033762 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (112)
Q Consensus 27 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~ 62 (112)
+...|.--|...+..++++|. ++|++.+.+.+.+.
T Consensus 30 ~~~~GH~~G~~~l~~i~~~c~-~~GI~~lTvYaFS~ 64 (239)
T PRK14839 30 PRLAGHRAGVEAIRRVVEAAP-DLGIGTLTLYAFSS 64 (239)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEEech
Confidence 455677778899999999998 78999988877654
No 239
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=29.45 E-value=80 Score=21.80 Aligned_cols=33 Identities=12% Similarity=0.168 Sum_probs=26.7
Q ss_pred EEEEeCcccccCcHHHHHHHHHHHHHHHhcCcc
Q 033762 21 EIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIH 53 (112)
Q Consensus 21 ~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~ 53 (112)
..+.|+..++.-|+|.++...+++.++..+..+
T Consensus 290 ~lvtVe~~~p~~gigaei~A~i~E~~fdyLdAP 322 (359)
T KOG0524|consen 290 RLVTVEEGWPQFGIGAEICAQIMENAFDYLDAP 322 (359)
T ss_pred eEEEEeccccccchhHHHHHHHHHHHHhhhcch
Confidence 355668899999999999999999888665444
No 240
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=29.35 E-value=87 Score=17.24 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=10.7
Q ss_pred EEEeCcccccCcHHHHHHHHHHH
Q 033762 22 IMIAEPKSRGKGLAKDAVLMMMA 44 (112)
Q Consensus 22 ~~~v~~~~rg~Gig~~l~~~~~~ 44 (112)
.+++||+.-|.-++..+++.+-.
T Consensus 64 iiatD~D~EGe~Ia~~i~~~~~~ 86 (100)
T PF01751_consen 64 IIATDPDREGELIAWEIIELLGK 86 (100)
T ss_dssp EEEC-SSHHHHHHHHHHHHHHHH
T ss_pred eecCCCChHHHHHHHHHHHHHhH
Confidence 34445555555555555444443
No 241
>PF11633 SUD-M: Single-stranded poly(A) binding domain; InterPro: IPR024375 This domain identifies non-structural protein 3 (Nsp3). It is found in human SARS coronavirus polyprotein 1a and 1ab, and in related coronavirus polyproteins [].; PDB: 2KQV_A 2W2G_A 2WCT_D 2JZE_A 2JZF_A 2RNK_A 2JZD_A.
Probab=29.06 E-value=1.4e+02 Score=18.16 Aligned_cols=68 Identities=9% Similarity=0.046 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeeccccceeccceeeecchhhHHHHHHHhhcc
Q 033762 37 DAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIFKEVTLELPVENAKREELLVLTANV 108 (112)
Q Consensus 37 ~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (112)
.=++.++.+++ +.|. .+-+--++.+..++.++-|+....-...+.++.++.--......++...+..+
T Consensus 23 ~~~r~ml~~ak-~~g~---~~pvc~D~~A~~k~lkr~gv~~~egl~t~~G~~fY~Ys~~~Pl~~vi~~lNsl 90 (142)
T PF11633_consen 23 WNFRAMLQHAK-ETGL---LCPVCIDYPAFCKTLKRKGVDPKEGLQTVDGVQFYFYSSKTPLTDVIKALNSL 90 (142)
T ss_dssp --CHHHHHHHH-HHT----EEEEETT-HHHHHHHHHTTS---SEEEES-SSEEEEE-TTS-HHHHHHHHCCC
T ss_pred hhHHHHHHHHH-hcCc---EEEEEeccHHHHHHHhccCcccccceEEecceEEEEEecCCcHHHHHHHHhhc
Confidence 33455666665 3343 34566788999999999888877644444454444433444444555555544
No 242
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=28.43 E-value=1.9e+02 Score=19.47 Aligned_cols=65 Identities=12% Similarity=0.071 Sum_probs=40.6
Q ss_pred eEEEEEEEeCcccccCc--HHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecccc
Q 033762 17 LAEVEIMIAEPKSRGKG--LAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (112)
Q Consensus 17 ~~~i~~~~v~~~~rg~G--ig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~~~ 82 (112)
...|.-+.-++++...| .-.+.+..=+..++ +.|++.|.....+..+.-..++.++|+-...+..
T Consensus 14 ~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k-~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~ 80 (298)
T PF02836_consen 14 PIFLRGVNRHQDYPGLGRAMPDEAMERDLELMK-EMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIP 80 (298)
T ss_dssp EE-EEEEEE-S-BTTTBT---HHHHHHHHHHHH-HTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S
T ss_pred EEEEEEEeeCcCcccccccCCHHHHHHHHHHHH-hcCcceEEcccccCcHHHHHHHhhcCCEEEEecc
Confidence 34555555556554444 44566666666665 7899999998888889999999999998876544
No 243
>PF15538 Toxin_61: Putative toxin 61
Probab=28.18 E-value=37 Score=20.97 Aligned_cols=37 Identities=11% Similarity=0.290 Sum_probs=26.4
Q ss_pred EEEeCCccHHHHHHHHhCCCeeeccccceeccceeee
Q 033762 56 RAKIGESNGASLRLFQKLGFEDISYSEIFKEVTLELP 92 (112)
Q Consensus 56 ~~~~~~~n~~s~~~y~~~Gf~~~~~~~~~~~~~~~~~ 92 (112)
-+.+...-+.|..||.+-||.......+..++++..+
T Consensus 18 dinirgn~e~a~~F~~s~G~~~~~~~~~m~GIDf~~P 54 (157)
T PF15538_consen 18 DINIRGNREIASDFFKSQGLTEADMESYMNGIDFSKP 54 (157)
T ss_pred ceeeccchHHHHHHHHHcCCCHHHHHHHhccCCcCCc
Confidence 3556667788999999999998876555555554433
No 244
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=27.91 E-value=64 Score=17.98 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=16.4
Q ss_pred EEEEeCCccHHHHHHHH-hCCCeeec
Q 033762 55 FRAKIGESNGASLRLFQ-KLGFEDIS 79 (112)
Q Consensus 55 l~~~~~~~n~~s~~~y~-~~Gf~~~~ 79 (112)
+.+.| .+=.+|.+||+ .+||+...
T Consensus 6 ~~l~v-~D~~~a~~FY~~~lG~~~~~ 30 (120)
T cd09011 6 PLLVV-KDIEKSKKFYEKVLGLKVVM 30 (120)
T ss_pred EEEEE-CCHHHHHHHHHHhcCCEEee
Confidence 33434 34568899998 59998753
No 245
>cd01212 JIP JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain. JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain. JIP is a mitogen-activated protein kinase scaffold protein. JIP consists of a C-terminal SH3 domain, followed by a PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=27.69 E-value=1.5e+02 Score=18.11 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=24.6
Q ss_pred eEEEEEEEeCcccccCcHHHHHHHHHHHHH
Q 033762 17 LAEVEIMIAEPKSRGKGLAKDAVLMMMAYA 46 (112)
Q Consensus 17 ~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~ 46 (112)
.-+|+.+-| ++.+|..+-.++++.+....
T Consensus 7 vkyLGsveV-~~~kG~~v~~~A~rki~~~~ 35 (148)
T cd01212 7 LGYLGSVEV-LAHKGNGVLCQAMRKIVGEY 35 (148)
T ss_pred eEecceEEe-cCCCCcHHHHHHHHHHHHHH
Confidence 457999999 89999999999999987643
No 246
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=27.51 E-value=1.7e+02 Score=18.74 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=28.0
Q ss_pred cCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHH
Q 033762 31 GKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGAS 66 (112)
Q Consensus 31 g~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s 66 (112)
.-|.|+..+...+..+....|.+.+.+..++.+..+
T Consensus 10 KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~~l~ 45 (246)
T TIGR03371 10 KGGVGKTTLTANLASALKLLGEPVLAIDLDPQNLLR 45 (246)
T ss_pred CCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcchHH
Confidence 348888888888877776779999999999876443
No 247
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=27.51 E-value=64 Score=17.80 Aligned_cols=18 Identities=11% Similarity=0.257 Sum_probs=13.7
Q ss_pred cHHHHHHHH-hCCCeeecc
Q 033762 63 NGASLRLFQ-KLGFEDISY 80 (112)
Q Consensus 63 n~~s~~~y~-~~Gf~~~~~ 80 (112)
=.+|..||. .+||+....
T Consensus 12 ~~~s~~FY~~~lG~~~~~~ 30 (119)
T cd08359 12 LAETADFYVRHFGFTVVFD 30 (119)
T ss_pred HHHHHHHHHHhhCcEEEec
Confidence 357899996 599987753
No 248
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=27.50 E-value=27 Score=23.22 Aligned_cols=29 Identities=14% Similarity=0.130 Sum_probs=20.4
Q ss_pred CccEEEEEeCCccHHHHHHHHhCCCeeec
Q 033762 51 GIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (112)
Q Consensus 51 ~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~ 79 (112)
....+--.+..+...-.||.+|+||+=-.
T Consensus 36 si~~lA~~~~vS~aTv~Rf~kklG~~gf~ 64 (284)
T PRK11302 36 SIATLAKMANVSEPTVNRFCRSLDTKGFP 64 (284)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHcCCCCHH
Confidence 44444445566677889999999998443
No 249
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=27.46 E-value=77 Score=21.59 Aligned_cols=31 Identities=10% Similarity=0.228 Sum_probs=24.4
Q ss_pred ccCcHHHHHHHHHHHHHHHhcCccEEEEEeCC
Q 033762 30 RGKGLAKDAVLMMMAYAVENFGIHVFRAKIGE 61 (112)
Q Consensus 30 rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~ 61 (112)
.|.--|...+..++++|. ++|++.+.+.+.+
T Consensus 65 ~GH~~G~~~l~~i~~~c~-~lGIk~lTvYaFS 95 (275)
T PRK14835 65 MGHEFGVQKAYEVLEWCL-ELGIPTVTIWVFS 95 (275)
T ss_pred HHHHHHHHHHHHHHHHHH-HcCCCEEEEEEEE
Confidence 344558889999999998 7899998876653
No 250
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=27.16 E-value=84 Score=21.69 Aligned_cols=33 Identities=15% Similarity=0.267 Sum_probs=26.6
Q ss_pred cccccCcHHHHHHHHHHHHHHHhcCccEEEEEeC
Q 033762 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIG 60 (112)
Q Consensus 27 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~ 60 (112)
+...|.--|...+..++++|. ++|++.+.+...
T Consensus 88 ~~~~GH~~G~~~l~~v~~~c~-~lGI~~lTvYaF 120 (296)
T PRK14827 88 ARTEGHKMGEAVVIDIACGAI-ELGIKWLSLYAF 120 (296)
T ss_pred CHhHHHHHHHHHHHHHHHHHH-HcCCCEEEEeee
Confidence 344555568889999999997 789999988887
No 251
>PRK12303 tumor necrosis factor alpha-inducing protein; Reviewed
Probab=26.98 E-value=53 Score=19.69 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=29.5
Q ss_pred cCccEEEEEeCCccHHHHHHHHhCCCeeeccccceec
Q 033762 50 FGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIFKE 86 (112)
Q Consensus 50 ~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~~~~~~~ 86 (112)
.++.++-..+.|.|+....+.+..||....-.+....
T Consensus 122 mnvdrlgiyinpnneevfalvrargfdkdalseglhk 158 (192)
T PRK12303 122 MNVDRLGIYINPNNEEVFALVRARGFDKDALSEGLHK 158 (192)
T ss_pred hcchheeeeeCCCcHHHHHHHHHhcCCHHHHhhhHHh
Confidence 4677888999999999999999999988764443333
No 252
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=26.78 E-value=2.4e+02 Score=20.16 Aligned_cols=81 Identities=5% Similarity=0.008 Sum_probs=44.2
Q ss_pred eEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeeccccceeccceeeecchh
Q 033762 17 LAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIFKEVTLELPVENA 96 (112)
Q Consensus 17 ~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~~~~~~~~~~~~~~~~~ 96 (112)
+.+++.+--.=-|+.+-+|..=.+.+.++.-++.+-..+....-.-...-+.||+++-+...|-+. .....
T Consensus 74 TId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~~v~~h~~kIqd~~~~FYk~F~~iicGLDs---------IeaRR 144 (422)
T KOG2015|consen 74 TIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGCVVVPHRQKIQDKPISFYKRFDLIICGLDS---------IEARR 144 (422)
T ss_pred ceecccchhhhcccccccCchhHHHHHHHHHhhCCCcEEeeeecchhcCCHHHHhhhceEEecccc---------hhHHH
Confidence 344444333334566666766556666665444443343333333334557899999998887322 23445
Q ss_pred hHHHHHHHhh
Q 033762 97 KREELLVLTA 106 (112)
Q Consensus 97 ~~~~~~~~~~ 106 (112)
|.+.++.++.
T Consensus 145 wIN~mL~~l~ 154 (422)
T KOG2015|consen 145 WINGMLVRLK 154 (422)
T ss_pred HHHHHHHHHH
Confidence 5556665554
No 253
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=26.68 E-value=1.3e+02 Score=17.19 Aligned_cols=42 Identities=29% Similarity=0.387 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhcCccEEEEEeC---CccHHHHHHHHhCCCeeec
Q 033762 37 DAVLMMMAYAVENFGIHVFRAKIG---ESNGASLRLFQKLGFEDIS 79 (112)
Q Consensus 37 ~l~~~~~~~~~~~~~~~~l~~~~~---~~n~~s~~~y~~~Gf~~~~ 79 (112)
.+.+.+.+.+. ++|++.+.+.+. +..+++++.+.+.|++...
T Consensus 47 ~~a~~~~~~~~-~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 47 QAAEKIAKKAK-ELGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHHHHHHHH-CTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHH-HcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 45566667775 679998887765 4466888888899988664
No 254
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=26.64 E-value=2.4e+02 Score=20.15 Aligned_cols=61 Identities=25% Similarity=0.293 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCccEEEEEe------CCccHHHHHHHHhCCCeeeccccceeccceeeecchhhHHHHHHHhhcc
Q 033762 40 LMMMAYAVENFGIHVFRAKI------GESNGASLRLFQKLGFEDISYSEIFKEVTLELPVENAKREELLVLTANV 108 (112)
Q Consensus 40 ~~~~~~~~~~~~~~~l~~~~------~~~n~~s~~~y~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (112)
..+++|+.++.|.+++++.= ...|.-+..+.++.|.+.+++.- .++...-...++.++...
T Consensus 122 ~pl~~~~~~~~G~~r~~lvGSdYv~pre~Nri~r~~l~~~GgevvgE~Y--------~plg~td~~~ii~~I~~~ 188 (363)
T PF13433_consen 122 LPLIDYLLENFGAKRFYLVGSDYVYPRESNRIIRDLLEARGGEVVGERY--------LPLGATDFDPIIAEIKAA 188 (363)
T ss_dssp HHHHHHHHHHS--SEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEE--------E-S-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCceEEEecCCccchHHHHHHHHHHHHHcCCEEEEEEE--------ecCCchhHHHHHHHHHhh
Confidence 44566777677866665432 36699999999999999998533 445555566666665543
No 255
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=26.26 E-value=1.2e+02 Score=17.19 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=12.8
Q ss_pred cHHHHHHHHh-CCCeeec
Q 033762 63 NGASLRLFQK-LGFEDIS 79 (112)
Q Consensus 63 n~~s~~~y~~-~Gf~~~~ 79 (112)
=.+|.+||.+ +||+...
T Consensus 10 l~~a~~Fy~~~lG~~~~~ 27 (131)
T cd08343 10 VAATAAFYTEVLGFRVSD 27 (131)
T ss_pred HHHHHHHHHhcCCCEEEE
Confidence 3577899976 8998754
No 256
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]. The HhH motif is similar to, but distinct from, the HtH motif. Both of these motifs have two helices connected by a short turn. In the HtH motif the second helix binds to DNA with the helix in the major groove. This allows the contact between specific base and residues throughout the protein. In the HhH motif the second helix does not protrude from the surface of the protein and therefore cannot lie in the major groove of the DNA. Crystallographic studies suggest that the interaction of the HhH domain with DNA is mediated by amino acids located in the strongly conserved loop (L-P-G-V) and at the N-terminal end of the second helix []. This interaction could involve the formation of hydrogen bonds between protein backbone nitrogens and DNA phosphate groups []. The structural difference between the HtH and HhH domains is reflected at the functional level: whereas the HtH domain, found primarily in gene regulatory proteins, binds DNA in a sequence specific manner, the HhH domain is rather found in proteins involved in enzymatic activities and binds DNA with no sequence specificity []. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain [].; GO: 0003677 DNA binding; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 1Z00_A 2A1J_B 1KEA_A 1VRL_A 1RRQ_A 3G0Q_A ....
Probab=26.22 E-value=55 Score=14.05 Aligned_cols=13 Identities=8% Similarity=0.324 Sum_probs=8.6
Q ss_pred CcHHHHHHHHHHH
Q 033762 32 KGLAKDAVLMMMA 44 (112)
Q Consensus 32 ~Gig~~l~~~~~~ 44 (112)
.|+|.+..+.+++
T Consensus 17 pGIG~~tA~~I~~ 29 (30)
T PF00633_consen 17 PGIGPKTANAILS 29 (30)
T ss_dssp TT-SHHHHHHHHH
T ss_pred CCcCHHHHHHHHh
Confidence 4788888777665
No 257
>COG4904 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.02 E-value=55 Score=20.19 Aligned_cols=16 Identities=13% Similarity=0.291 Sum_probs=12.9
Q ss_pred HHHHHHHHhCCCeeec
Q 033762 64 GASLRLFQKLGFEDIS 79 (112)
Q Consensus 64 ~~s~~~y~~~Gf~~~~ 79 (112)
+....||++.||+-..
T Consensus 70 k~~~~FYEnyGf~A~e 85 (174)
T COG4904 70 KTVEAFYENYGFSAGE 85 (174)
T ss_pred HHHHHHHHHcCCCcCC
Confidence 4667899999998664
No 258
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=25.96 E-value=1.4e+02 Score=20.47 Aligned_cols=48 Identities=27% Similarity=0.232 Sum_probs=33.5
Q ss_pred cHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 33 GLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 33 Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
|+|+.-+..+......+.|.+.+.+.++|...-+--|=.++|-.....
T Consensus 11 GVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L~d~l~~~~~~~~~~v 58 (305)
T PF02374_consen 11 GVGKTTVAAALALALARRGKRTLLVSTDPAHSLSDVLGQKLGGEPTKV 58 (305)
T ss_dssp TSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHHHHHHTS--BSS-EEE
T ss_pred CCCcHHHHHHHHHHHhhCCCCeeEeecCCCccHHHHhCCcCCCCCeEe
Confidence 678877777776666567999999999999877777766676665543
No 259
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=25.82 E-value=24 Score=18.33 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCccEEEEEeCCccHHHHHHHH
Q 033762 40 LMMMAYAVENFGIHVFRAKIGESNGASLRLFQ 71 (112)
Q Consensus 40 ~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~ 71 (112)
..+..++++.++-..|.+...|.+..|..+|.
T Consensus 3 ~klq~yLr~~f~n~~i~v~~rpk~~dsaEV~~ 34 (63)
T PF11324_consen 3 KKLQAYLRRTFGNPGITVKARPKKDDSAEVYI 34 (63)
T ss_pred HHHHHHHHHHhCCCceEEEcCCCCCCceEEEe
Confidence 45667777778888999999888888877776
No 260
>PLN02300 lactoylglutathione lyase
Probab=25.79 E-value=71 Score=21.39 Aligned_cols=28 Identities=11% Similarity=0.387 Sum_probs=19.0
Q ss_pred CccEEEEEeCCccHHHHHHHHh-CCCeeec
Q 033762 51 GIHVFRAKIGESNGASLRLFQK-LGFEDIS 79 (112)
Q Consensus 51 ~~~~l~~~~~~~n~~s~~~y~~-~Gf~~~~ 79 (112)
++..+.+.|.. =..|.+||++ +||+...
T Consensus 24 ~l~Hv~l~V~D-le~s~~FY~~vLG~~~~~ 52 (286)
T PLN02300 24 RMLHVVYRVGD-LDRTIKFYTECLGMKLLR 52 (286)
T ss_pred eEEEEEEEeCC-HHHHHHHHHHhcCCEEEE
Confidence 44455555544 3588999975 8998865
No 261
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=25.49 E-value=1.3e+02 Score=16.73 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=15.7
Q ss_pred cEEEEEeCCccHHHHHHHHh-CCCeeec
Q 033762 53 HVFRAKIGESNGASLRLFQK-LGFEDIS 79 (112)
Q Consensus 53 ~~l~~~~~~~n~~s~~~y~~-~Gf~~~~ 79 (112)
..+.+.+. +=..+..||++ +||+...
T Consensus 3 ~hv~l~v~-d~~~~~~FY~~vLG~~~~~ 29 (121)
T cd07244 3 NHITLAVS-DLERSVAFYVDLLGFKLHV 29 (121)
T ss_pred ceEEEEEC-CHHHHHHHHHHhcCCEEEE
Confidence 34444442 33577888874 8887654
No 262
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=25.49 E-value=1.1e+02 Score=20.48 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=24.6
Q ss_pred cCcHHHHHHHHHHHHHHHhcCccEEEEEeCC
Q 033762 31 GKGLAKDAVLMMMAYAVENFGIHVFRAKIGE 61 (112)
Q Consensus 31 g~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~ 61 (112)
|.--|...+..+++||. .+|++.+++.+.+
T Consensus 47 Gh~~G~~~l~~~l~~c~-~~GI~~vTvYaFS 76 (251)
T PRK14830 47 GHKAGMDTVKKITKAAS-ELGVKVLTLYAFS 76 (251)
T ss_pred hHHHHHHHHHHHHHHHH-HcCCCEEEEEEEe
Confidence 66678889999999998 7899988877654
No 263
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=25.47 E-value=1e+02 Score=20.56 Aligned_cols=35 Identities=14% Similarity=0.215 Sum_probs=27.9
Q ss_pred cccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCc
Q 033762 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (112)
Q Consensus 27 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~ 62 (112)
|...|.--|...+..+++++. ++|++.+++.+.+.
T Consensus 31 ~~~~GH~~G~~~l~~i~~~~~-~~gI~~lT~YaFS~ 65 (242)
T PRK14838 31 ERSFGHQAGAETVHIITEEAA-RLGVKFLTLYTFST 65 (242)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEeech
Confidence 445566678889999999997 78999998877654
No 264
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=25.37 E-value=1.7e+02 Score=17.81 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=28.5
Q ss_pred CcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHH
Q 033762 32 KGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLF 70 (112)
Q Consensus 32 ~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y 70 (112)
=|.|+..+...+..+....|.+.+.+..++.......+.
T Consensus 8 GG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~~~~~~ 46 (195)
T PF01656_consen 8 GGVGKTTIAANLAQALARKGKKVLLIDLDPQAPNLSILF 46 (195)
T ss_dssp TTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHHHHHHT
T ss_pred CCccHHHHHHHHHhccccccccccccccCcccccHHHHh
Confidence 478888888877777667799999999988775544443
No 265
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=25.27 E-value=2.3e+02 Score=20.18 Aligned_cols=29 Identities=14% Similarity=0.239 Sum_probs=21.0
Q ss_pred eCCccHHHHHHHHhCCCeeeccccceecc
Q 033762 59 IGESNGASLRLFQKLGFEDISYSEIFKEV 87 (112)
Q Consensus 59 ~~~~n~~s~~~y~~~Gf~~~~~~~~~~~~ 87 (112)
..|.=..=..++++.||..+...+++...
T Consensus 131 SnPTW~nH~~if~~aGf~tv~~Y~yWd~~ 159 (410)
T KOG1412|consen 131 SNPTWENHHAIFEKAGFTTVATYPYWDAE 159 (410)
T ss_pred cCCchhHHHHHHHHcCCceeeeeeeecCC
Confidence 44554566789999999999876655544
No 266
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=25.17 E-value=2.7e+02 Score=20.13 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=30.8
Q ss_pred cccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecccc
Q 033762 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (112)
Q Consensus 27 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~~~ 82 (112)
+++|.-|+|.+++ +.+|++++.+.+ +|+.-..-.+.+|.+.+++.+
T Consensus 311 ~D~RdygigAqIL--------~dLGV~~irLLT--Nnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 311 EDERDYAAAFQIL--------KALGIEKVRLLT--NNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred ccceeeeHHHHHH--------HHcCCCEEEECC--CCHHHHHHHHhCCCEEEEEec
Confidence 4456666555553 356888886655 467667777899999887543
No 267
>PRK15482 transcriptional regulator MurR; Provisional
Probab=24.84 E-value=24 Score=23.65 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=16.2
Q ss_pred EeCCccHHHHHHHHhCCCeeec
Q 033762 58 KIGESNGASLRLFQKLGFEDIS 79 (112)
Q Consensus 58 ~~~~~n~~s~~~y~~~Gf~~~~ 79 (112)
.+..+...-.||.+|+||.=..
T Consensus 43 ~~~vS~aTv~Rf~kkLGf~Gf~ 64 (285)
T PRK15482 43 QLGISQSSIVKFAQKLGAQGFT 64 (285)
T ss_pred HhCCCHHHHHHHHHHhCCCCHH
Confidence 3445566789999999998443
No 268
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=24.74 E-value=1.1e+02 Score=20.65 Aligned_cols=30 Identities=7% Similarity=0.121 Sum_probs=25.2
Q ss_pred ccCcHHHHHHHHHHHHHHHhcCccEEEEEeC
Q 033762 30 RGKGLAKDAVLMMMAYAVENFGIHVFRAKIG 60 (112)
Q Consensus 30 rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~ 60 (112)
.|.--|...+..++++|. ++|++.+.+.+.
T Consensus 51 ~GH~~G~~~l~~~~~~~~-~~gIk~lTvYaF 80 (256)
T PRK14828 51 QGHRAGAAKIGEFLGWCD-ETDVNVVTLYLL 80 (256)
T ss_pred HHHHHHHHHHHHHHHHHH-HcCCCEEEEEEE
Confidence 566678889999999998 789999888666
No 269
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=24.39 E-value=3.4e+02 Score=22.65 Aligned_cols=67 Identities=12% Similarity=0.140 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeeccccceeccceeeecchhhHHHHHHHhh
Q 033762 36 KDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIFKEVTLELPVENAKREELLVLTA 106 (112)
Q Consensus 36 ~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (112)
..++....++|. ..|...+...+.+.+ ...|.++||......+...-....+...|.....+...+.
T Consensus 298 ~~~i~~F~~~a~-~~g~~p~fy~vse~~---~~~~~~~G~~~lklGeEavvdl~~Fsl~Gk~~~~lR~a~n 364 (1094)
T PRK02983 298 PQAIDAWLALAR-TYGWAPAVMGASEAG---ARAYREAGLSALELGDEAILDTADFTLSGPDMRPVRQAVT 364 (1094)
T ss_pred HHHHHHHHHHHH-HcCCEEEEEEECHHH---HHHHHHcCCcEEEecceEEEccccCCccCchhHHHHHHHH
Confidence 368888889887 567776666665544 4479999999764322111111123345555555555444
No 270
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=24.11 E-value=26 Score=23.53 Aligned_cols=29 Identities=17% Similarity=0.356 Sum_probs=20.0
Q ss_pred CccEEEEEeCCccHHHHHHHHhCCCeeec
Q 033762 51 GIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (112)
Q Consensus 51 ~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~ 79 (112)
....+--.+..+...-.||.+|+||.=-.
T Consensus 48 si~~lA~~~~vS~aTi~Rf~kkLGf~gf~ 76 (292)
T PRK11337 48 ALKDIAEALAVSEAMIVKVAKKLGFSGFR 76 (292)
T ss_pred CHHHHHHHhCCChHHHHHHHHHcCCCCHH
Confidence 33444444556677889999999998543
No 271
>cd01214 CG8312 CG8312 Phosphotyrosine-binding (PTB) domain. CG8312 Phosphotyrosine-binding (PTB) domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=23.68 E-value=1.8e+02 Score=17.58 Aligned_cols=46 Identities=11% Similarity=0.111 Sum_probs=35.0
Q ss_pred CeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHh-cCccEEEEEeCCc
Q 033762 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVEN-FGIHVFRAKIGES 62 (112)
Q Consensus 16 ~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~-~~~~~l~~~~~~~ 62 (112)
..-+++...+ ...+|.|-..+.+..+...+... ....++.+++.|.
T Consensus 5 ~VkYLG~~~t-~~~~Geg~t~~av~~I~~~~~~~~k~~~km~L~Vsp~ 51 (133)
T cd01214 5 TVLYLGNVLT-IQARGEGCTEKALGKIWSKYEAGARQDTKMKLTVSAS 51 (133)
T ss_pred EEEEcccccc-cccCCCccHHHHHHHHHHHHhhcccccceEEEEEcCC
Confidence 4567888888 58999999999999998876522 2356788888776
No 272
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=23.20 E-value=1.9e+02 Score=20.68 Aligned_cols=43 Identities=16% Similarity=0.308 Sum_probs=26.6
Q ss_pred cccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecc
Q 033762 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (112)
Q Consensus 27 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~ 80 (112)
++.|.-|+|.++ .+.+|++++.+.+ |+.-..-.+.+|.+.+++
T Consensus 319 ~d~R~y~igaqI--------L~~Lgv~~irLlT---np~K~~~L~~~Gi~V~~~ 361 (367)
T PRK14019 319 VDYRTYGIGAQI--------LRDLGVGKMRLLS---SPRKFPSMSGFGLEVTGY 361 (367)
T ss_pred cccceehHHHHH--------HHHcCCCeEEECC---CcHHHHhhhhCCcEEEEE
Confidence 345555555444 2366888888776 444555567788887764
No 273
>COG0271 BolA Stress-induced morphogen (activity unknown) [Signal transduction mechanisms]
Probab=23.12 E-value=1.5e+02 Score=16.53 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=32.1
Q ss_pred CeEEEEEEEeCcccccCcHHH--HHHHHHHHHHHHhcCccEEEEEeCCc
Q 033762 16 ELAEVEIMIAEPKSRGKGLAK--DAVLMMMAYAVENFGIHVFRAKIGES 62 (112)
Q Consensus 16 ~~~~i~~~~v~~~~rg~Gig~--~l~~~~~~~~~~~~~~~~l~~~~~~~ 62 (112)
...++...+|++.|+|+..-. +++..++.... ..+++-+.+.+...
T Consensus 37 ~~~Hf~i~IVS~~F~G~s~v~rHr~V~~~L~del-~~~iHALal~t~t~ 84 (90)
T COG0271 37 GGSHFKVVIVSEAFQGKSLVARHRLVYSALKDEL-SGGIHALALHTYTP 84 (90)
T ss_pred CCCeEEEEEEchhhCCccHHHHHHHHHHHHHHHH-hccceeeEeEeecc
Confidence 345788889999999998765 56666666555 33577777666543
No 274
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=22.73 E-value=1.4e+02 Score=18.16 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=16.4
Q ss_pred ccEEEEEeCCccHHHHHHHH-hCCCeeec
Q 033762 52 IHVFRAKIGESNGASLRLFQ-KLGFEDIS 79 (112)
Q Consensus 52 ~~~l~~~~~~~n~~s~~~y~-~~Gf~~~~ 79 (112)
+..+.+.|.. =..+..||. .+||+...
T Consensus 7 i~Hi~l~V~D-le~a~~FY~~vLG~~~~~ 34 (166)
T cd09014 7 LDHVNLLASD-VDANRDFMEEVLGFRLRE 34 (166)
T ss_pred eeeEEEEcCC-HHHHHHHHHHccCCEEEE
Confidence 3344444433 457788886 58887654
No 275
>PF00376 MerR: MerR family regulatory protein; InterPro: IPR000551 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these is the MerR subfamily. MerR, which is found in many bacterial species mediates the mercuric-dependent induction of the mercury resistance operon. In the absence of mercury merR represses transcription by binding tightly, as a dimer, to the 'mer' operator region; when mercury is present the dimeric complex binds a single ion and becomes a potent transcriptional activator, while remaining bound to the mer site. Members of the family include the mercuric resistance operon regulatory protein merR; Bacillus subtilis bltR and bmrR; Bacillus glnR; Streptomyces coelicolor hspR; Bradyrhizobium japonicum nolA; Escherichia coli superoxide response regulator soxR; and Streptomyces lividans transcriptional activator tipA [, , , , , ]. Other members include hypothetical proteins from E. coli, B. subtilis and Haemophilus influenzae. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3HH0_A 2DG6_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q07_A 1Q06_A 1Q05_B ....
Probab=22.53 E-value=95 Score=14.03 Aligned_cols=14 Identities=21% Similarity=0.510 Sum_probs=11.2
Q ss_pred cHHHHHHHHhCCCe
Q 033762 63 NGASLRLFQKLGFE 76 (112)
Q Consensus 63 n~~s~~~y~~~Gf~ 76 (112)
....+++|++.|.-
T Consensus 12 s~~tlR~ye~~Gll 25 (38)
T PF00376_consen 12 SPRTLRYYEREGLL 25 (38)
T ss_dssp -HHHHHHHHHTTSS
T ss_pred CHHHHHHHHHCCCC
Confidence 36789999999975
No 276
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=22.52 E-value=2.4e+02 Score=20.83 Aligned_cols=54 Identities=15% Similarity=0.160 Sum_probs=30.8
Q ss_pred EEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCC
Q 033762 22 IMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 75 (112)
Q Consensus 22 ~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf 75 (112)
.+.++..+..-|+|+.+...+.+..++.+..+-..+.....=......++++|+
T Consensus 395 vvtvEE~~~~gGlG~~va~~l~e~~f~~l~~pv~ri~~~d~~~~~~~~le~~~l 448 (464)
T PRK11892 395 LVTVEEGWPQSGVGAEIAARVMEQAFDYLDAPVLRVTGKDVPMPYAANLEKLAL 448 (464)
T ss_pred EEEEeCCCcCCcHHHHHHHHHHHhCccccCCCeEEeccCCccCCcHHHHHHhcC
Confidence 355667777779999999999887653333333333221111113345666665
No 277
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.88 E-value=97 Score=23.07 Aligned_cols=39 Identities=8% Similarity=0.083 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCC
Q 033762 35 AKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLG 74 (112)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~G 74 (112)
|..+...++++++.+...+ =+.+|..-|.-..++|++-|
T Consensus 191 G~~iyN~Lv~fir~ey~~r-Gf~EVitPniy~~~LWe~SG 229 (560)
T KOG1637|consen 191 GTRIYNTLVDFIRAEYRKR-GFTEVITPNIYNKKLWETSG 229 (560)
T ss_pred cchHHHHHHHHHHHHHHhc-CCceecCcchhhhhhhhhcc
Confidence 6778888888877553222 23444455666666776666
No 278
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=21.39 E-value=2.7e+02 Score=22.40 Aligned_cols=43 Identities=12% Similarity=0.260 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhcCc--cEEEEEeCCccHHHHHHHHhCCCeeec
Q 033762 37 DAVLMMMAYAVENFGI--HVFRAKIGESNGASLRLFQKLGFEDIS 79 (112)
Q Consensus 37 ~l~~~~~~~~~~~~~~--~~l~~~~~~~n~~s~~~y~~~Gf~~~~ 79 (112)
++++.+-+++.+.+++ .+|+.++...+.-|..+|.+.|.-...
T Consensus 96 eai~~awe~lT~~~~i~~~rl~vTv~~~D~ea~~iW~~~g~~~~~ 140 (851)
T TIGR00344 96 EAIAFAWELLTSVLGLDKERLYVTVYEDDEEAYEIWEKHGIPAER 140 (851)
T ss_pred HHHHHHHHHHhhhcCCChHHEEEEEcCCCHHHHHHHHhcCCCHHH
Confidence 4555555555433444 589999999999999999887765543
No 279
>PLN02367 lactoylglutathione lyase
Probab=21.34 E-value=96 Score=20.60 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=17.2
Q ss_pred EEEEEeCCccHHHHHHHH-hCCCeeecc
Q 033762 54 VFRAKIGESNGASLRLFQ-KLGFEDISY 80 (112)
Q Consensus 54 ~l~~~~~~~n~~s~~~y~-~~Gf~~~~~ 80 (112)
+..+.|. +=+.|+.||+ -+||+...+
T Consensus 78 HtmlRVk-Dle~Sl~FYt~vLGm~ll~r 104 (233)
T PLN02367 78 QTMYRIK-DPKASLDFYSRVLGMSLLKR 104 (233)
T ss_pred EEEEEeC-CHHHHHHHHHHhcCCEEeEE
Confidence 3334443 2347999996 599998764
No 280
>PHA02518 ParA-like protein; Provisional
Probab=20.97 E-value=2.2e+02 Score=17.63 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=27.4
Q ss_pred cCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHH
Q 033762 31 GKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASL 67 (112)
Q Consensus 31 g~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~ 67 (112)
.=|.|+.-+...+..+....|.+.+.+..++.+..+.
T Consensus 9 KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~ 45 (211)
T PHA02518 9 KGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTD 45 (211)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHH
Confidence 3478888777777666667788888888888765544
No 281
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=20.96 E-value=2.1e+02 Score=17.29 Aligned_cols=48 Identities=15% Similarity=0.090 Sum_probs=35.9
Q ss_pred cccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeec
Q 033762 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (112)
Q Consensus 27 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~ 79 (112)
=|=||-|+|+.+++.+-+.+- ..+.....-+|..|-.-.-|.|-..-.
T Consensus 5 IDGQGGGiG~~iv~~lr~~~~-----~~~eI~AlGTNa~AT~~MlKaGA~~gA 52 (131)
T PF12953_consen 5 IDGQGGGIGKQIVEKLRKELP-----EEVEIIALGTNAIATSAMLKAGANEGA 52 (131)
T ss_pred EeCCCChhHHHHHHHHHHhCC-----CCcEEEEEehhHHHHHHHHHcCCCCcc
Confidence 367999999999888766432 235566777888888888899887643
No 282
>PRK15447 putative protease; Provisional
Probab=20.81 E-value=1e+02 Score=21.05 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=18.8
Q ss_pred EEeCCccHHHHHHHHhCCCeeec
Q 033762 57 AKIGESNGASLRLFQKLGFEDIS 79 (112)
Q Consensus 57 ~~~~~~n~~s~~~y~~~Gf~~~~ 79 (112)
......|..+.+||.++|+..+-
T Consensus 114 ~~lni~N~~a~~~l~~~G~~rv~ 136 (301)
T PRK15447 114 PALNCYNAATLALLARLGATRWC 136 (301)
T ss_pred cccccCCHHHHHHHHHcCCcEEE
Confidence 44557899999999999997653
No 283
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=20.80 E-value=1.7e+02 Score=16.81 Aligned_cols=18 Identities=6% Similarity=0.098 Sum_probs=11.1
Q ss_pred ccHHHHHHHHh-CCCeeec
Q 033762 62 SNGASLRLFQK-LGFEDIS 79 (112)
Q Consensus 62 ~n~~s~~~y~~-~Gf~~~~ 79 (112)
+-.++..||++ +||+...
T Consensus 10 Dl~~a~~FY~~~LG~~~~~ 28 (131)
T cd08363 10 NLDKSISFYKHVFMEKLLV 28 (131)
T ss_pred CHHHHHHHHHHhhCCEEec
Confidence 33466777774 6777643
No 284
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=20.76 E-value=2.4e+02 Score=19.93 Aligned_cols=26 Identities=8% Similarity=0.141 Sum_probs=19.8
Q ss_pred EEEeCcccccCcHHHHHHHHHHHHHH
Q 033762 22 IMIAEPKSRGKGLAKDAVLMMMAYAV 47 (112)
Q Consensus 22 ~~~v~~~~rg~Gig~~l~~~~~~~~~ 47 (112)
.+.++.....-|+|+++.+.+.+..+
T Consensus 283 vvtvEE~~~~GGlGs~Va~~l~e~~f 308 (356)
T PLN02683 283 LVTVEEGWPQHGVGAEICASVVEESF 308 (356)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHhch
Confidence 35556666677999999999988755
No 285
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=20.76 E-value=1e+02 Score=16.72 Aligned_cols=19 Identities=26% Similarity=0.336 Sum_probs=14.4
Q ss_pred ccHHHHHHHHh-CCCeeecc
Q 033762 62 SNGASLRLFQK-LGFEDISY 80 (112)
Q Consensus 62 ~n~~s~~~y~~-~Gf~~~~~ 80 (112)
+=.++.+||++ +||+....
T Consensus 8 d~~~s~~Fy~~~lg~~~~~~ 27 (113)
T cd08345 8 DLNKSIAFYRDILGAELIYS 27 (113)
T ss_pred CHHHHHHHHHHhcCCeeeec
Confidence 34588999997 99987643
No 286
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=20.58 E-value=1.6e+02 Score=16.45 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=15.5
Q ss_pred cEEEEEeCCccHHHHHHHH-hCCCeeec
Q 033762 53 HVFRAKIGESNGASLRLFQ-KLGFEDIS 79 (112)
Q Consensus 53 ~~l~~~~~~~n~~s~~~y~-~~Gf~~~~ 79 (112)
..+.+.|.. =..|..||. .+||+...
T Consensus 6 ~hv~l~v~D-l~~s~~FY~~~lG~~~~~ 32 (123)
T cd08351 6 NHTIVPARD-REASAEFYAEILGLPWAK 32 (123)
T ss_pred eEEEEEcCC-HHHHHHHHHHhcCCEeee
Confidence 344444333 346788885 47887754
No 287
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=20.51 E-value=1.8e+02 Score=16.53 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=14.6
Q ss_pred EEeCCccHHHHHHHH-hCCCeeecc
Q 033762 57 AKIGESNGASLRLFQ-KLGFEDISY 80 (112)
Q Consensus 57 ~~~~~~n~~s~~~y~-~~Gf~~~~~ 80 (112)
+.+...-..|+.||+ .+|++....
T Consensus 5 L~~~~~~~eAi~FY~~~fg~~~~~~ 29 (128)
T cd06588 5 LWFNGNAEEALEFYQSVFGGEITSL 29 (128)
T ss_pred EeeCCCHHHHHHHHHHHhCCEeEEE
Confidence 334344557777886 377776653
No 288
>CHL00041 rps11 ribosomal protein S11
Probab=20.48 E-value=1.9e+02 Score=16.80 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHhcCccEEEEEeC---CccHHHHHHHHhCCCeeec
Q 033762 35 AKDAVLMMMAYAVENFGIHVFRAKIG---ESNGASLRLFQKLGFEDIS 79 (112)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~l~~~~~---~~n~~s~~~y~~~Gf~~~~ 79 (112)
+..+.+.+.+.+. +.|++.+.+.+. +..+++++-.++.|++...
T Consensus 58 a~~~a~~~~~~~~-~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~~ 104 (116)
T CHL00041 58 AQTAAENAIRTVI-DQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLSS 104 (116)
T ss_pred HHHHHHHHHHHHH-HcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 3355666667776 579998887774 5677888888999998764
No 289
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=20.43 E-value=1.7e+02 Score=16.96 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=16.5
Q ss_pred ccEEEEEeCCccHHHHHHHH-hCCCeeec
Q 033762 52 IHVFRAKIGESNGASLRLFQ-KLGFEDIS 79 (112)
Q Consensus 52 ~~~l~~~~~~~n~~s~~~y~-~~Gf~~~~ 79 (112)
+..+.+.|.. =.+|.+||+ .+||+...
T Consensus 5 i~hi~L~v~D-l~~s~~FY~~~lG~~~~~ 32 (139)
T PRK04101 5 INHICFSVSN-LEKSIEFYEKVLGAKLLV 32 (139)
T ss_pred EEEEEEEecC-HHHHHHHHHhccCCEEEe
Confidence 4445444443 347788885 58888763
No 290
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=20.35 E-value=3.7e+02 Score=19.92 Aligned_cols=46 Identities=17% Similarity=0.298 Sum_probs=30.6
Q ss_pred cccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHHHHHHHHhCCCeeecccc
Q 033762 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (112)
Q Consensus 27 ~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~s~~~y~~~Gf~~~~~~~ 82 (112)
+++|.-|+|.+++ +.+|+++|.+.+. |+.-+.-.+.+|.+.+++.+
T Consensus 364 ~D~RdygigAqIL--------~dLGI~~irLLTN--Np~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 364 VDSREYGIGAQIL--------RDLGVRTMRLMTN--NPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred ccceehHHHHHHH--------HHcCCCEEEECCC--CHHHHHHHhhCCCEEEEEec
Confidence 4456666665553 3568888876654 66666677889999886543
No 291
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=20.32 E-value=33 Score=22.78 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=18.6
Q ss_pred ccEEEEEeCCccHHHHHHHHhCCCeeec
Q 033762 52 IHVFRAKIGESNGASLRLFQKLGFEDIS 79 (112)
Q Consensus 52 ~~~l~~~~~~~n~~s~~~y~~~Gf~~~~ 79 (112)
+..+--.+..+...-.||.+|+||.=-.
T Consensus 33 i~elA~~~~vS~aTv~Rf~kklG~~Gf~ 60 (278)
T PRK11557 33 SQQLANEAGVSQSSVVKFAQKLGYKGFP 60 (278)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCCCHH
Confidence 3333334455666789999999998543
No 292
>cd04263 DUF619-NAGK-FABP DUF619 domain of N-acetylglutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway. DUF619-NAGK-FABP: DUF619 domain of N-acetylglutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (FABP). The nuclear-encoded, mitochondrial polyprotein precursor (ARG5,6) consists of an N-terminal NAGK (ArgB) domain, a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved into two distinct enzymes (NAGK-DUF619 and NAGPR) in the mitochondria. Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. Arg5,6 catalyzes the second reaction of arginine biosynthesis; the phosphorylation of the gamma-carboxyl group of NAG to produce N-acetylglutamylphosphate (NAGP) which is subsequently converted to ornithine in two more steps. It also binds and regulates the promoters of nuclear and mitochondrial genes, and may possibly regu
Probab=20.20 E-value=1.9e+02 Score=16.45 Aligned_cols=44 Identities=9% Similarity=0.040 Sum_probs=34.7
Q ss_pred CeEEEEEEEeCcccccCcHHHHHHHHHHHHHHHhcCccEEEEEeCCccHH
Q 033762 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGA 65 (112)
Q Consensus 16 ~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~~~~~~~~l~~~~~~~n~~ 65 (112)
..+++..+.+....++.|++..+.+.+.+. .+.+...+.++|+.
T Consensus 32 ~vp~LdkF~vs~~~~l~~vaD~Vf~~i~~d------~p~L~W~~r~~n~~ 75 (98)
T cd04263 32 EVATLATFTITKSGWLNNVADNIFTAIKKD------HPKLVWTVREDDEN 75 (98)
T ss_pred CCEEEEEEEEccccccccHHHHHHHHHHhh------CCeeEEEeCCCCCc
Confidence 678999999988888899888887776542 34788888888863
No 293
>cd04777 HTH_MerR-like_sg1 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 1), N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=20.13 E-value=88 Score=17.57 Aligned_cols=16 Identities=19% Similarity=0.187 Sum_probs=12.5
Q ss_pred cHHHHHHHHhCCCeee
Q 033762 63 NGASLRLFQKLGFEDI 78 (112)
Q Consensus 63 n~~s~~~y~~~Gf~~~ 78 (112)
...++++|++.|.-.-
T Consensus 13 s~~tlRyYe~~GLl~p 28 (107)
T cd04777 13 TIDTVRHYIDLGLLIP 28 (107)
T ss_pred CHHHHHHHHHCCCcCC
Confidence 3578999999998643
Done!