BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033763
         (112 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2K5K|A Chain A, Solution Structure Of Rhr2 From Rhodobacter Sphaeroides.
           Northeast Structural Genomics Consortium
          Length = 70

 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 15/25 (60%), Positives = 18/25 (72%)

Query: 88  EVGGPRGPEPTRYGDWERNGRCYDF 112
           E+GG  GPEP R+GDWE+ G   DF
Sbjct: 38  EIGGRNGPEPVRFGDWEKKGIAIDF 62


>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic
           Asymmetry Of Eukaryotic Cytosolic Chaperonins
 pdb|3P9D|P Chain P, The Crystal Structure Of Yeast Cct Reveals Intrinsic
           Asymmetry Of Eukaryotic Cytosolic Chaperonins
 pdb|3P9E|HH Chain h, The Crystal Structure Of Yeast Cct Reveals Intrinsic
           Asymmetry Of Eukaryotic Cytosolic Chaperonins
 pdb|3P9E|PP Chain p, The Crystal Structure Of Yeast Cct Reveals Intrinsic
           Asymmetry Of Eukaryotic Cytosolic Chaperonins
 pdb|4D8Q|H Chain H, Molecular Architecture Of The Eukaryotic Chaperonin
           TricCCT DERIVED By A Combination Of Chemical
           Crosslinking And Mass-Spectrometry, Xl- Ms
 pdb|4D8Q|P Chain P, Molecular Architecture Of The Eukaryotic Chaperonin
           TricCCT DERIVED By A Combination Of Chemical
           Crosslinking And Mass-Spectrometry, Xl- Ms
 pdb|4D8R|HH Chain h, Molecular Architecture Of The Eukaryotic Chaperonin
           TricCCT DERIVED By A Combination Of Chemical
           Crosslinking And Mass-Spectrometry, Xl- Ms
 pdb|4D8R|PP Chain p, Molecular Architecture Of The Eukaryotic Chaperonin
           TricCCT DERIVED By A Combination Of Chemical
           Crosslinking And Mass-Spectrometry, Xl- Ms
          Length = 568

 Score = 25.8 bits (55), Expect = 6.1,   Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 88  EVGGPRGPEPTRYGDWER 105
           + GGPR P+  R G+W++
Sbjct: 549 KAGGPRAPQGPRPGNWDQ 566


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.308    0.134    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,460,686
Number of Sequences: 62578
Number of extensions: 133176
Number of successful extensions: 107
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 105
Number of HSP's gapped (non-prelim): 3
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 45 (21.9 bits)