Query 033763
Match_columns 112
No_of_seqs 117 out of 204
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 06:02:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033763.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033763hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3245 Uncharacterized conser 99.9 4.6E-24 9.9E-29 154.9 3.1 98 1-112 1-106 (106)
2 PF07896 DUF1674: Protein of u 99.8 3.6E-20 7.7E-25 118.1 -0.2 33 80-112 15-47 (47)
3 COG5508 Uncharacterized conser 99.6 8E-16 1.7E-20 108.3 1.9 29 84-112 56-84 (84)
4 TIGR01533 lipo_e_P4 5'-nucleot 40.7 12 0.00025 30.3 0.6 9 95-104 233-241 (266)
5 KOG0302 Ribosome Assembly prot 18.9 76 0.0017 28.5 1.8 28 83-110 145-178 (440)
6 PHA03308 transcriptional regul 18.5 1.5E+02 0.0032 29.6 3.7 21 27-47 1251-1271(1463)
7 PF06419 COG6: Conserved oligo 17.2 41 0.00088 30.0 -0.2 11 96-106 249-263 (618)
8 PLN02294 cytochrome c oxidase 17.2 3.4E+02 0.0073 21.7 4.9 18 5-22 9-26 (174)
9 PF12124 Nsp3_PL2pro: Coronavi 16.4 61 0.0013 22.2 0.5 13 99-111 14-26 (66)
10 KOG1819 FYVE finger-containing 12.6 2.4E+02 0.0052 27.1 3.4 59 10-88 387-445 (990)
No 1
>KOG3245 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.89 E-value=4.6e-24 Score=154.89 Aligned_cols=98 Identities=34% Similarity=0.524 Sum_probs=66.2
Q ss_pred CcccchhhHhhhhccCCCCCCCCCCccCCcchhhhhhhccCCCCCCCCCC--CCCCcccc------cchhhhhhhcccCC
Q 033763 1 MARNNLGRIFASIADLSAPPKLSPPLVGSSNSVSRLIRSSSSTRQENSPV--KEPGETVK------SNQESEEIVDDRGD 72 (112)
Q Consensus 1 MA~n~~~R~las~~~~~~~r~~s~~~~~ss~~v~Rl~~SSs~~p~~~~p~--~e~~e~~~------~~k~~~~~~~~~~~ 72 (112)
|+.|++.|+||-.++. ++...++||+|++.. +..+.+. ++....++ |+.+.+.. ..|+
T Consensus 1 M~~~~~~~l~sw~~~t-----------~~~~~~s~ll~~~~~-k~~k~~~~~qel~r~~~p~~~L~e~~a~~~~--~~Ek 66 (106)
T KOG3245|consen 1 MTPSRLPWLLSWVSAT-----------AWRAARSELLCHPLR-KTSKSQGAFQELLRQSLPLPMLPEGDAPHPS--HLEK 66 (106)
T ss_pred CCcchhhhHHhHhhhc-----------chhcccccccCCCCC-CCccccchhHHHHHhhcCccccccccccChh--hhhc
Confidence 9999999999954442 234456778886433 3333222 22222222 22222222 2234
Q ss_pred CCcCCCCcccCCCCCCCCCCCCCCCCccCccccCCeeecC
Q 033763 73 ENEEDTGDFVNKDTGEVGGPRGPEPTRYGDWERNGRCYDF 112 (112)
Q Consensus 73 ~~~~~~~~~vnp~tgE~gGpkg~ePtRyGDWe~~Gr~~DF 112 (112)
|.-.-+..+|||.|||||||.|||||||||||+||||+||
T Consensus 67 epl~~~p~~vNp~TgEiGGprGPEPTRYGDWErkgr~~~F 106 (106)
T KOG3245|consen 67 EPLKPWPNDVNPYTGEIGGPRGPEPTRYGDWERKGRCSDF 106 (106)
T ss_pred ccCCCCcccCCccccccCCCCCCCCccccchhhccccccC
Confidence 5556788999999999999999999999999999999999
No 2
>PF07896 DUF1674: Protein of unknown function (DUF1674); InterPro: IPR012875 The members of this family are sequences derived from hypothetical eukaryotic and bacterial proteins. The region in question is approximately 60 residues long. ; PDB: 2K5K_A.
Probab=99.77 E-value=3.6e-20 Score=118.12 Aligned_cols=33 Identities=73% Similarity=1.398 Sum_probs=5.0
Q ss_pred cccCCCCCCCCCCCCCCCCccCccccCCeeecC
Q 033763 80 DFVNKDTGEVGGPRGPEPTRYGDWERNGRCYDF 112 (112)
Q Consensus 80 ~~vnp~tgE~gGpkg~ePtRyGDWe~~Gr~~DF 112 (112)
.+++|+|+|+|||+|+|||||||||+||||+||
T Consensus 15 ~~~~P~~~E~gGp~g~ePtRyGDWe~kGr~~DF 47 (47)
T PF07896_consen 15 GDVNPKTGEIGGPKGPEPTRYGDWERKGRASDF 47 (47)
T ss_dssp ---------S---------S-------STT---
T ss_pred cccCCCccccCCCCCCCCccccccccCCEeccC
Confidence 678999999999999999999999999999999
No 3
>COG5508 Uncharacterized conserved small protein [Function unknown]
Probab=99.57 E-value=8e-16 Score=108.34 Aligned_cols=29 Identities=59% Similarity=1.107 Sum_probs=27.9
Q ss_pred CCCCCCCCCCCCCCCccCccccCCeeecC
Q 033763 84 KDTGEVGGPRGPEPTRYGDWERNGRCYDF 112 (112)
Q Consensus 84 p~tgE~gGpkg~ePtRyGDWe~~Gr~~DF 112 (112)
+++.||||.+|+|||||||||+||||+||
T Consensus 56 s~pkEiGGrgGlePtRyGDWe~KGr~iDF 84 (84)
T COG5508 56 SLPKEIGGRGGLEPTRYGDWEHKGRVIDF 84 (84)
T ss_pred ccchhhCCCCCCCccccccccccceecCC
Confidence 47899999999999999999999999999
No 4
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=40.69 E-value=12 Score=30.33 Aligned_cols=9 Identities=67% Similarity=1.782 Sum_probs=7.8
Q ss_pred CCCCccCccc
Q 033763 95 PEPTRYGDWE 104 (112)
Q Consensus 95 ~ePtRyGDWe 104 (112)
|+|+ |||||
T Consensus 233 PNp~-YG~we 241 (266)
T TIGR01533 233 PNPM-YGSWE 241 (266)
T ss_pred cCCC-Ccchh
Confidence 6787 99998
No 5
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=18.93 E-value=76 Score=28.53 Aligned_cols=28 Identities=32% Similarity=0.558 Sum_probs=19.0
Q ss_pred CCCCCCCCCCCCCCCCccC------ccccCCeee
Q 033763 83 NKDTGEVGGPRGPEPTRYG------DWERNGRCY 110 (112)
Q Consensus 83 np~tgE~gGpkg~ePtRyG------DWe~~Gr~~ 110 (112)
+...+-.||-.+.---||| -|.-+|||.
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~ 178 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQ 178 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEE
Confidence 3355666776665555565 799999985
No 6
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=18.54 E-value=1.5e+02 Score=29.64 Aligned_cols=21 Identities=38% Similarity=0.264 Sum_probs=10.2
Q ss_pred cCCcchhhhhhhccCCCCCCC
Q 033763 27 VGSSNSVSRLIRSSSSTRQEN 47 (112)
Q Consensus 27 ~~ss~~v~Rl~~SSs~~p~~~ 47 (112)
.||+++.+-.-||||++++..
T Consensus 1251 mhssssssssscsssssss~s 1271 (1463)
T PHA03308 1251 MHSSSSSSSSSCSSSSSSSDS 1271 (1463)
T ss_pred cccccccccccccccCCCCCc
Confidence 444444444556555544443
No 7
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=17.25 E-value=41 Score=29.98 Aligned_cols=11 Identities=55% Similarity=1.404 Sum_probs=8.4
Q ss_pred CCCcc-Cc---cccC
Q 033763 96 EPTRY-GD---WERN 106 (112)
Q Consensus 96 ePtRy-GD---We~~ 106 (112)
||+|| || |-+-
T Consensus 249 DP~RYvGDmLAwvHq 263 (618)
T PF06419_consen 249 DPLRYVGDMLAWVHQ 263 (618)
T ss_pred ChHHHHHHHHHHHHH
Confidence 89999 87 6543
No 8
>PLN02294 cytochrome c oxidase subunit Vb
Probab=17.24 E-value=3.4e+02 Score=21.70 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=8.0
Q ss_pred chhhHhhhhccCCCCCCC
Q 033763 5 NLGRIFASIADLSAPPKL 22 (112)
Q Consensus 5 ~~~R~las~~~~~~~r~~ 22 (112)
||.++.+++.+.++.++.
T Consensus 9 ~L~~la~~~~~~s~~~~~ 26 (174)
T PLN02294 9 HLKTLAASVVAASPRRTV 26 (174)
T ss_pred HHHHHHHhhcccCccccc
Confidence 555554444333344433
No 9
>PF12124 Nsp3_PL2pro: Coronavirus polyprotein cleavage domain; InterPro: IPR022733 This domain is found in SARS coronaviruses, and is about 70 amino acids in length. It is found associated with various other coronavirus proteins due to the polyprotein nature of most viral translation. PL2pro is a domain of the non-structural protein nsp3. The domain performs three of the cleavages required to separate the translated polyprotein into its distinct proteins. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity, 0016788 hydrolase activity, acting on ester bonds, 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2KAF_A 2KQW_A.
Probab=16.43 E-value=61 Score=22.20 Aligned_cols=13 Identities=31% Similarity=0.808 Sum_probs=6.6
Q ss_pred ccCccccCCeeec
Q 033763 99 RYGDWERNGRCYD 111 (112)
Q Consensus 99 RyGDWe~~Gr~~D 111 (112)
-|-||+|.|.-+.
T Consensus 14 sy~dwsysgqrte 26 (66)
T PF12124_consen 14 SYRDWSYSGQRTE 26 (66)
T ss_dssp EETTEE----EET
T ss_pred cccccccccceeh
Confidence 3789999997654
No 10
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=12.59 E-value=2.4e+02 Score=27.06 Aligned_cols=59 Identities=27% Similarity=0.238 Sum_probs=0.0
Q ss_pred hhhhccCCCCCCCCCCccCCcchhhhhhhccCCCCCCCCCCCCCCcccccchhhhhhhcccCCCCcCCCCcccCCCCCC
Q 033763 10 FASIADLSAPPKLSPPLVGSSNSVSRLIRSSSSTRQENSPVKEPGETVKSNQESEEIVDDRGDENEEDTGDFVNKDTGE 88 (112)
Q Consensus 10 las~~~~~~~r~~s~~~~~ss~~v~Rl~~SSs~~p~~~~p~~e~~e~~~~~k~~~~~~~~~~~~~~~~~~~~vnp~tgE 88 (112)
|+...-+.+.+..|+.-.+|--+.+--+-||+-+|.+.. +..+|+++|++.+|+...-|
T Consensus 387 lsatst~~aspaps~s~~hsiastssaatsstnppad~~--------------------dgdde~eddddidvdeedie 445 (990)
T KOG1819|consen 387 LSATSTALASPAPSGSEEHSIASTSSAATSSTNPPADNE--------------------DGDDEAEDDDDIDVDEEDIE 445 (990)
T ss_pred cccccccccCCCCCCCccccccccccccccCCCCccccc--------------------cCcccccCcccccccccccc
Done!