Query 033763
Match_columns 112
No_of_seqs 117 out of 204
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 09:45:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033763.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033763hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k5k_A Uncharacterized protein 99.6 8E-17 2.7E-21 109.2 2.7 30 83-112 33-62 (70)
2 4b2v_A S64; toxin, ICK; NMR {S 41.4 15 0.00051 21.3 1.9 21 88-110 5-25 (32)
3 2jss_B Uncharacterized protein 30.9 30 0.001 22.6 2.2 22 73-94 23-44 (62)
4 3ocu_A Lipoprotein E; hydrolas 28.9 12 0.00042 28.9 0.1 10 95-105 217-226 (262)
5 3pct_A Class C acid phosphatas 28.2 13 0.00044 28.7 0.1 11 94-105 216-226 (260)
6 2i9n_A MHB4A peptide; beta-hai 21.4 31 0.0011 20.0 0.9 10 101-110 2-11 (33)
7 2i9o_A MHB8A peptide; beta-hai 16.4 44 0.0015 19.8 0.7 10 101-110 2-11 (37)
8 4a2v_A RIG-I, retinoic acid in 15.5 43 0.0015 24.1 0.6 14 97-110 50-63 (131)
9 3lrr_A Probable ATP-dependent 15.3 38 0.0013 24.0 0.3 14 97-110 48-61 (121)
10 3eqt_A ATP-dependent RNA helic 14.5 47 0.0016 24.3 0.6 14 97-110 58-71 (145)
No 1
>2k5k_A Uncharacterized protein RHR2; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Rhodobacter sphaeroides 2}
Probab=99.63 E-value=8e-17 Score=109.19 Aligned_cols=30 Identities=50% Similarity=1.058 Sum_probs=28.4
Q ss_pred CCCCCCCCCCCCCCCCccCccccCCeeecC
Q 033763 83 NKDTGEVGGPRGPEPTRYGDWERNGRCYDF 112 (112)
Q Consensus 83 np~tgE~gGpkg~ePtRyGDWe~~Gr~~DF 112 (112)
...+.|+|||+|+|||||||||+||||+||
T Consensus 33 ~~~p~E~GG~~G~EPtRYGDWE~kG~a~~~ 62 (70)
T 2k5k_A 33 LDLPKEIGGRNGPEPVRFGDWEKKGIAIDF 62 (70)
T ss_dssp CCCCCCSCCCCCCCCCSCCCCCCCSTTCCC
T ss_pred ccCCcccCCCCCCCCcccccchhcceeehh
Confidence 456899999999999999999999999999
No 2
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=41.43 E-value=15 Score=21.27 Aligned_cols=21 Identities=52% Similarity=1.137 Sum_probs=14.8
Q ss_pred CCCCCCCCCCCccCccccCCeee
Q 033763 88 EVGGPRGPEPTRYGDWERNGRCY 110 (112)
Q Consensus 88 E~gGpkg~ePtRyGDWe~~Gr~~ 110 (112)
|-||-- |+|-+.|||- -|||+
T Consensus 5 enggfc-pdpekmgdwc-cgrci 25 (32)
T 4b2v_A 5 ENGGFC-PDPEKMGDWC-CGRCI 25 (32)
T ss_dssp CTTCBC-CCTTTTCCCC-SSEEE
T ss_pred hcCCcC-CChHHhcchh-hhHHH
Confidence 445543 5999999996 46775
No 3
>2jss_B Uncharacterized protein YER030W; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae}
Probab=30.93 E-value=30 Score=22.65 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=13.2
Q ss_pred CCcCCCCcccCCCCCCCCCCCC
Q 033763 73 ENEEDTGDFVNKDTGEVGGPRG 94 (112)
Q Consensus 73 ~~~~~~~~~vnp~tgE~gGpkg 94 (112)
+++++....+++..--.||++-
T Consensus 23 e~~eD~l~eId~sNII~~GRRT 44 (62)
T 2jss_B 23 EEEEDDLAEIDTSNIITSGRRT 44 (62)
T ss_dssp GGGGSCSCCCCGGGTCCCSSCC
T ss_pred ccccccccccchhhcccCCccc
Confidence 3345555677776655567653
No 4
>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A
Probab=28.90 E-value=12 Score=28.89 Aligned_cols=10 Identities=50% Similarity=1.351 Sum_probs=8.2
Q ss_pred CCCCccCcccc
Q 033763 95 PEPTRYGDWER 105 (112)
Q Consensus 95 ~ePtRyGDWe~ 105 (112)
|+|+ ||+||.
T Consensus 217 PNp~-YG~we~ 226 (262)
T 3ocu_A 217 PNAN-YGGWEG 226 (262)
T ss_dssp CCSS-CSHHHH
T ss_pred CCCC-ccchhH
Confidence 6787 999984
No 5
>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida}
Probab=28.20 E-value=13 Score=28.70 Aligned_cols=11 Identities=55% Similarity=1.214 Sum_probs=8.6
Q ss_pred CCCCCccCcccc
Q 033763 94 GPEPTRYGDWER 105 (112)
Q Consensus 94 g~ePtRyGDWe~ 105 (112)
=|+|+ ||+||.
T Consensus 216 lPNp~-YG~we~ 226 (260)
T 3pct_A 216 LPNTQ-YGDWEG 226 (260)
T ss_dssp CCCCS-CSHHHH
T ss_pred eCCCC-cchhhH
Confidence 36787 999984
No 6
>2i9n_A MHB4A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=21.37 E-value=31 Score=20.01 Aligned_cols=10 Identities=50% Similarity=1.155 Sum_probs=8.4
Q ss_pred CccccCCeee
Q 033763 101 GDWERNGRCY 110 (112)
Q Consensus 101 GDWe~~Gr~~ 110 (112)
|.|.+||+..
T Consensus 2 gkwtyngity 11 (33)
T 2i9n_A 2 GKWTYNGITY 11 (33)
T ss_dssp CCCBSSSCBC
T ss_pred CceeECCEEe
Confidence 7899999864
No 7
>2i9o_A MHB8A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=16.37 E-value=44 Score=19.81 Aligned_cols=10 Identities=50% Similarity=1.155 Sum_probs=8.3
Q ss_pred CccccCCeee
Q 033763 101 GDWERNGRCY 110 (112)
Q Consensus 101 GDWe~~Gr~~ 110 (112)
|.|.+||+..
T Consensus 2 gkwtyngity 11 (37)
T 2i9o_A 2 GKWTYNGITY 11 (37)
T ss_dssp CCCCSSSCCC
T ss_pred CceeECCEEe
Confidence 7899999864
No 8
>4a2v_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 1.44A {Anas platyrhynchos} PDB: 4a2x_A
Probab=15.49 E-value=43 Score=24.06 Aligned_cols=14 Identities=21% Similarity=0.821 Sum_probs=12.1
Q ss_pred CCccCccccCCeee
Q 033763 97 PTRYGDWERNGRCY 110 (112)
Q Consensus 97 PtRyGDWe~~Gr~~ 110 (112)
|-+|+||+.+|.+.
T Consensus 50 ~k~f~d~~~~g~I~ 63 (131)
T 4a2v_A 50 PMQFDGFEKKSKMY 63 (131)
T ss_dssp CCCTTSEEEEEEEE
T ss_pred CchhhcccCCcEEE
Confidence 77899999999874
No 9
>3lrr_A Probable ATP-dependent RNA helicase DDX58; innate immunity, viral RNA, RIG-I like receptors, antiviral ATP-binding, helicase, hydrolase; HET: ATP; 2.15A {Homo sapiens} PDB: 3lrn_A* 3og8_A 2rmj_A 3ncu_A*
Probab=15.33 E-value=38 Score=23.95 Aligned_cols=14 Identities=14% Similarity=0.776 Sum_probs=0.0
Q ss_pred CCccCccccCCeee
Q 033763 97 PTRYGDWERNGRCY 110 (112)
Q Consensus 97 PtRyGDWe~~Gr~~ 110 (112)
|-+|+||+.+|.+.
T Consensus 48 ~k~f~d~~~~g~I~ 61 (121)
T 3lrr_A 48 PKQFSSFEKRAKIF 61 (121)
T ss_dssp CCEETTEEEEEEEE
T ss_pred CchhhcccCCcEEE
No 10
>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A
Probab=14.52 E-value=47 Score=24.30 Aligned_cols=14 Identities=21% Similarity=0.534 Sum_probs=0.0
Q ss_pred CCccCccccCCeee
Q 033763 97 PTRYGDWERNGRCY 110 (112)
Q Consensus 97 PtRyGDWe~~Gr~~ 110 (112)
|-.|+||+.+|.+.
T Consensus 58 ~k~f~d~~~~g~I~ 71 (145)
T 3eqt_A 58 NKVFKDWKPGGVIS 71 (145)
T ss_dssp SSCCSSEEEEEEEE
T ss_pred CcccccccCCcEEE
Done!