Query 033763
Match_columns 112
No_of_seqs 117 out of 204
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 09:45:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033763.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033763hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vv5a1 b.38.1.3 (A:113-179) M 8.9 43 0.0032 18.9 0.5 10 96-105 16-25 (67)
2 d1jkza_ g.3.7.5 (A:) Defensin 6.3 70 0.0051 18.3 0.6 7 106-112 32-38 (46)
3 d1zaka2 g.41.2.1 (A:128-158) M 6.0 70 0.0051 16.9 0.4 9 82-90 4-12 (31)
4 d2axto1 f.4.1.4 (O:30-271) Man 5.9 51 0.0037 24.4 -0.3 12 81-92 200-211 (242)
5 d1zuea1 g.9.1.1 (A:1-42) Defen 5.7 91 0.0066 17.5 0.8 10 102-111 9-18 (42)
6 d1e44b_ b.101.1.1 (B:) Ribonuc 5.2 1.3E+02 0.0093 19.4 1.4 21 77-99 70-90 (96)
7 d1ylla1 b.82.1.17 (A:2-196) Hy 4.6 75 0.0054 22.1 -0.1 17 96-112 86-108 (195)
8 d1k0ra4 d.202.1.1 (A:-4-99) Tr 4.6 1.9E+02 0.014 17.7 2.0 16 75-90 46-61 (104)
9 d1jida_ d.201.1.1 (A:) SRP19 { 4.4 1.5E+02 0.011 18.8 1.3 15 96-110 64-79 (114)
10 d1mc3a_ c.68.1.6 (A:) RffH {Es 4.2 1.3E+02 0.0095 21.2 1.0 20 93-112 137-158 (291)
No 1
>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein MscS (YggB), middle domain {Escherichia coli [TaxId: 562]}
Probab=8.86 E-value=43 Score=18.91 Aligned_cols=10 Identities=30% Similarity=0.650 Sum_probs=7.9
Q ss_pred CCCccCcccc
Q 033763 96 EPTRYGDWER 105 (112)
Q Consensus 96 ePtRyGDWe~ 105 (112)
.|.|-|||-.
T Consensus 16 ~pf~vGD~I~ 25 (67)
T d2vv5a1 16 RPFRAGEYVD 25 (67)
T ss_dssp CSSCTTCEEE
T ss_pred CCccCCCEEE
Confidence 5889999953
No 2
>d1jkza_ g.3.7.5 (A:) Defensin 1 (PSD1) {Pea (Pisum sativum) [TaxId: 3888]}
Probab=6.27 E-value=70 Score=18.34 Aligned_cols=7 Identities=29% Similarity=1.065 Sum_probs=4.4
Q ss_pred CCeeecC
Q 033763 106 NGRCYDF 112 (112)
Q Consensus 106 ~Gr~~DF 112 (112)
.|||.||
T Consensus 32 SGrCrdf 38 (46)
T d1jkza_ 32 SGTCHNW 38 (46)
T ss_dssp CEEEETT
T ss_pred ccceecc
Confidence 4666666
No 3
>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}
Probab=5.97 E-value=70 Score=16.90 Aligned_cols=9 Identities=22% Similarity=0.368 Sum_probs=6.7
Q ss_pred cCCCCCCCC
Q 033763 82 VNKDTGEVG 90 (112)
Q Consensus 82 vnp~tgE~g 90 (112)
+||.||||-
T Consensus 4 ~DP~TG~iY 12 (31)
T d1zaka2 4 LDPVTGKIY 12 (31)
T ss_dssp ECTTTCCEE
T ss_pred CCCCCCcEe
Confidence 578888874
No 4
>d2axto1 f.4.1.4 (O:30-271) Manganese-stabilising protein, PsbO {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.88 E-value=51 Score=24.43 Aligned_cols=12 Identities=42% Similarity=0.664 Sum_probs=10.5
Q ss_pred ccCCCCCCCCCC
Q 033763 81 FVNKDTGEVGGP 92 (112)
Q Consensus 81 ~vnp~tgE~gGp 92 (112)
-||+.|||++|-
T Consensus 200 kVd~~TGEiaGv 211 (242)
T d2axto1 200 KVDGRTGEIAGT 211 (242)
T ss_dssp ECCTTTCEEEEE
T ss_pred eeCCCCCcEEEE
Confidence 489999999984
No 5
>d1zuea1 g.9.1.1 (A:1-42) Defensin-like peptide, DLP {Duckbilled platypus (Ornithorhynchus anatinus), DLP-2 [TaxId: 9258]}
Probab=5.68 E-value=91 Score=17.46 Aligned_cols=10 Identities=40% Similarity=1.056 Sum_probs=8.5
Q ss_pred ccccCCeeec
Q 033763 102 DWERNGRCYD 111 (112)
Q Consensus 102 DWe~~Gr~~D 111 (112)
=|.+.|.|.|
T Consensus 9 c~~~~gvcrd 18 (42)
T d1zuea1 9 CWSHSGVCRD 18 (42)
T ss_dssp TTTTTCEEEE
T ss_pred cccccceecc
Confidence 5999999887
No 6
>d1e44b_ b.101.1.1 (B:) Ribonuclease domain of colicin E3 {Escherichia coli [TaxId: 562]}
Probab=5.19 E-value=1.3e+02 Score=19.44 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=15.5
Q ss_pred CCCcccCCCCCCCCCCCCCCCCc
Q 033763 77 DTGDFVNKDTGEVGGPRGPEPTR 99 (112)
Q Consensus 77 ~~~~~vnp~tgE~gGpkg~ePtR 99 (112)
..-+..||.||+.- |+++|.|
T Consensus 70 ~HLGafDp~TG~q~--K~p~~~R 90 (96)
T d1e44b_ 70 QHLGSFDPKTGNQL--KGPDPKR 90 (96)
T ss_dssp BEEEEECTTTCCBC--SCCCTTC
T ss_pred ccccccCCcccccc--cCCCCCc
Confidence 44567899999987 5666665
No 7
>d1ylla1 b.82.1.17 (A:2-196) Hypothetical protein PA5104 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=4.63 E-value=75 Score=22.13 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=12.6
Q ss_pred CCCcc-CccccC-----CeeecC
Q 033763 96 EPTRY-GDWERN-----GRCYDF 112 (112)
Q Consensus 96 ePtRy-GDWe~~-----Gr~~DF 112 (112)
+|.+| |||... |-|.||
T Consensus 86 ~~~~F~Gd~~~~a~L~~Gpi~df 108 (195)
T d1ylla1 86 QAFAFSGDSEVHCTLLDGAIRDF 108 (195)
T ss_dssp CCEEEETTSCEEEEESSSCEEEE
T ss_pred CccCcCCCCcEEEEeCCCCEEEE
Confidence 67777 888765 677776
No 8
>d1k0ra4 d.202.1.1 (A:-4-99) Transcription factor NusA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=4.57 E-value=1.9e+02 Score=17.68 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=11.8
Q ss_pred cCCCCcccCCCCCCCC
Q 033763 75 EEDTGDFVNKDTGEVG 90 (112)
Q Consensus 75 ~~~~~~~vnp~tgE~g 90 (112)
+.+....+|+.||++-
T Consensus 46 ~~~i~V~id~~tG~i~ 61 (104)
T d1k0ra4 46 QTDARIEIDRKTGVVR 61 (104)
T ss_dssp CSSCCCCCCSSSCCCC
T ss_pred ccceEEEEECCCCeEE
Confidence 4567788888888763
No 9
>d1jida_ d.201.1.1 (A:) SRP19 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.36 E-value=1.5e+02 Score=18.76 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=10.8
Q ss_pred CCCcc-CccccCCeee
Q 033763 96 EPTRY-GDWERNGRCY 110 (112)
Q Consensus 96 ePtRy-GDWe~~Gr~~ 110 (112)
-|-.| -||+..|||.
T Consensus 64 ~Pr~~~~~~~~~GRVr 79 (114)
T d1jida_ 64 YSREWNRDVQYRGRVR 79 (114)
T ss_dssp CTTCCCCCGGGCCEEE
T ss_pred CCcccccccccCceEE
Confidence 44455 4899999984
No 10
>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}
Probab=4.21 E-value=1.3e+02 Score=21.22 Aligned_cols=20 Identities=25% Similarity=0.519 Sum_probs=14.2
Q ss_pred CCCCCCccCc--cccCCeeecC
Q 033763 93 RGPEPTRYGD--WERNGRCYDF 112 (112)
Q Consensus 93 kg~ePtRyGD--We~~Gr~~DF 112 (112)
+-.+|.|||= -..+|++++|
T Consensus 137 ~V~dP~~yGVve~d~~g~i~~i 158 (291)
T d1mc3a_ 137 QVMDPERFGVVEFDDNFRAISL 158 (291)
T ss_dssp ECSCCSSSBBCEEETTEEEEEC
T ss_pred ECCCcccCCCceeccCcceeEE
Confidence 3358999994 4456888876
Done!