BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033765
(112 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255560876|ref|XP_002521451.1| polypeptide deformylase, putative [Ricinus communis]
gi|223539350|gb|EEF40941.1| polypeptide deformylase, putative [Ricinus communis]
Length = 282
Score = 203 bits (517), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 94/108 (87%), Positives = 104/108 (96%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVL+NPR+NKYS K++P+ EGC
Sbjct: 121 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLINPRLNKYSKKIVPFNEGC 180
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LSFPGI+ADV RPESVKIDARDINGARF+V+LS LPARVFQHE+DHL+
Sbjct: 181 LSFPGIYADVLRPESVKIDARDINGARFTVNLSGLPARVFQHEYDHLE 228
>gi|225452422|ref|XP_002276964.1| PREDICTED: peptide deformylase 1B, chloroplastic [Vitis vinifera]
gi|296087647|emb|CBI34903.3| unnamed protein product [Vitis vinifera]
Length = 275
Score = 203 bits (517), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 96/108 (88%), Positives = 102/108 (94%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYS K++ + EGC
Sbjct: 114 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSKKIVLFNEGC 173
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LSFPGI+ADVERPESVKIDARDI GARF ++LS LPARVFQHEFDHLQ
Sbjct: 174 LSFPGIYADVERPESVKIDARDITGARFMINLSGLPARVFQHEFDHLQ 221
>gi|350535262|ref|NP_001234441.1| peptide deformylase 1B, chloroplastic [Solanum lycopersicum]
gi|17433052|sp|Q9FV54.1|DEF1B_SOLLC RecName: Full=Peptide deformylase 1B, chloroplastic; Short=PDF 1B;
AltName: Full=Polypeptide deformylase; Flags: Precursor
gi|11320950|gb|AAG33972.1| peptide deformylase-like protein [Solanum lycopersicum]
Length = 279
Score = 197 bits (502), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 90/108 (83%), Positives = 100/108 (92%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD+MYKTDGIGLSAPQVG+NVQLMVFN GERGEGEEIVLVNPRV++YS ++IPYEEGC
Sbjct: 118 MFDIMYKTDGIGLSAPQVGMNVQLMVFNAAGERGEGEEIVLVNPRVSRYSRRIIPYEEGC 177
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LSFP IH DV+RPESVK+DA+DING RF +SLS LPARVFQHEFDHLQ
Sbjct: 178 LSFPMIHGDVKRPESVKVDAQDINGTRFEISLSALPARVFQHEFDHLQ 225
>gi|224060121|ref|XP_002300047.1| peptide deformylase [Populus trichocarpa]
gi|222847305|gb|EEE84852.1| peptide deformylase [Populus trichocarpa]
Length = 258
Score = 196 bits (499), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 93/108 (86%), Positives = 100/108 (92%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVGINVQLMVFNP E GEG+EIVLVNPRVNKYS K + + EGC
Sbjct: 98 MFDVMYKTDGIGLSAPQVGINVQLMVFNPADEHGEGDEIVLVNPRVNKYSKKTVLFNEGC 157
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LSFPGI+ADV+RPESVKIDARDINGARF+V+LS LPARVFQHEFDHLQ
Sbjct: 158 LSFPGIYADVKRPESVKIDARDINGARFTVNLSGLPARVFQHEFDHLQ 205
>gi|351725295|ref|NP_001237855.1| uncharacterized protein LOC100500424 [Glycine max]
gi|255630300|gb|ACU15506.1| unknown [Glycine max]
Length = 221
Score = 193 bits (490), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 92/110 (83%), Positives = 101/110 (91%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQ+GINVQLMVFNPVGE GEGEEIVLVNPRV++YS K+ + EGC
Sbjct: 106 MFDVMYKTDGIGLSAPQLGINVQLMVFNPVGEHGEGEEIVLVNPRVSQYSKKLTLFNEGC 165
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQVF 110
LSFPGI+ADV+RPESVKIDAR ING FSV+LSDLPAR+FQHEFDHLQ F
Sbjct: 166 LSFPGINADVKRPESVKIDARGINGTMFSVNLSDLPARIFQHEFDHLQEF 215
>gi|11320966|gb|AAG33980.1|AF269165_1 peptide deformylase [Arabidopsis thaliana]
Length = 273
Score = 192 bits (487), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 85/108 (78%), Positives = 101/108 (93%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVG+NVQLMVFNP GE GEG+EIVLVNP++ KYS+K++P++EGC
Sbjct: 112 MFDVMYKTDGIGLSAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGC 171
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LSFPGI+A+V RP+SVKIDARDI G RFS+SLS LPAR+FQHE+DHL+
Sbjct: 172 LSFPGIYAEVVRPQSVKIDARDITGERFSISLSSLPARIFQHEYDHLE 219
>gi|15241461|ref|NP_196970.1| peptide deformylase 1B [Arabidopsis thaliana]
gi|30684999|ref|NP_850821.1| peptide deformylase 1B [Arabidopsis thaliana]
gi|39932734|sp|Q9FUZ2.2|DEF1B_ARATH RecName: Full=Peptide deformylase 1B, chloroplastic; Short=AtDEF2;
Short=AtPDF1B; Short=PDF 1B; AltName: Full=Polypeptide
deformylase; Flags: Precursor
gi|7573315|emb|CAB87633.1| putative protein [Arabidopsis thaliana]
gi|15292891|gb|AAK92816.1| unknown protein [Arabidopsis thaliana]
gi|20465677|gb|AAM20307.1| unknown protein [Arabidopsis thaliana]
gi|332004676|gb|AED92059.1| peptide deformylase 1B [Arabidopsis thaliana]
gi|332004677|gb|AED92060.1| peptide deformylase 1B [Arabidopsis thaliana]
Length = 273
Score = 191 bits (485), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 85/108 (78%), Positives = 101/108 (93%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVG+NVQLMVFNP GE GEG+EIVLVNP++ KYS+K++P++EGC
Sbjct: 112 MFDVMYKTDGIGLSAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGC 171
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LSFPGI+A+V RP+SVKIDARDI G RFS+SLS LPAR+FQHE+DHL+
Sbjct: 172 LSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLE 219
>gi|21553551|gb|AAM62644.1| Formylmethionine deformylase [Arabidopsis thaliana]
Length = 273
Score = 191 bits (485), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 85/108 (78%), Positives = 101/108 (93%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVG+NVQLMVFNP GE GEG+EIVLVNP++ KYS+K++P++EGC
Sbjct: 112 MFDVMYKTDGIGLSAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGC 171
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LSFPGI+A+V RP+SVKIDARDI G RFS+SLS LPAR+FQHE+DHL+
Sbjct: 172 LSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLE 219
>gi|194368702|pdb|3CPM|A Chain A, Plant Peptide Deformylase Pdf1b Crystal Structure
Length = 193
Score = 189 bits (481), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 85/108 (78%), Positives = 101/108 (93%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVG+NVQLMVFNP GE GEG+EIVLVNP++ KYS+K++P++EGC
Sbjct: 48 MFDVMYKTDGIGLSAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LSFPGI+A+V RP+SVKIDARDI G RFS+SLS LPAR+FQHE+DHL+
Sbjct: 108 LSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLE 155
>gi|297811599|ref|XP_002873683.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319520|gb|EFH49942.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 273
Score = 189 bits (481), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 86/108 (79%), Positives = 100/108 (92%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVG+NVQLMVFNP GE GEGEEIVLVNP + KYS+K++P++EGC
Sbjct: 112 MFDVMYKTDGIGLSAPQVGLNVQLMVFNPAGEPGEGEEIVLVNPIIKKYSDKLVPFDEGC 171
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LSFPGI+A+V RP+SVKIDARDI G RFS+SLS LPAR+FQHE+DHL+
Sbjct: 172 LSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLE 219
>gi|327200558|pdb|3M6O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide
Deformylase 1b (Atpdf1b)
gi|327200559|pdb|3M6O|B Chain B, Crystal Structure Of Arabidopsis Thaliana Peptide
Deformylase 1b (Atpdf1b)
gi|327200560|pdb|3M6P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide
Deformylase 1b (Atpdf1b) In Complex With Actinonin
gi|327200561|pdb|3M6P|B Chain B, Crystal Structure Of Arabidopsis Thaliana Peptide
Deformylase 1b (Atpdf1b) In Complex With Actinonin
gi|335892336|pdb|3O3J|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide
Deformylase 1b (Atpdf1b) In Complex With Inhibitor 6b
gi|335892375|pdb|3PN2|A Chain A, Crystal Structure Of Arabidopsis Thaliana Petide
Deformylase 1b (Atpdf1b) (Crystallized In Peg-550-Mme)
gi|335892376|pdb|3PN3|A Chain A, Crystal Structure Of Arabidopsis Thaliana Petide
Deformylase 1b (Atpdf1b) In Complex With Inhibitor 21
gi|335892377|pdb|3PN3|B Chain B, Crystal Structure Of Arabidopsis Thaliana Petide
Deformylase 1b (Atpdf1b) In Complex With Inhibitor 21
gi|335892378|pdb|3PN4|A Chain A, Crystal Structure Of Arabidopsis Thaliana Petide
Deformylase 1b (Atpdf1b) In Complex With Actinonin
(Crystallized In Peg-550-Mme)
Length = 193
Score = 189 bits (480), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 85/108 (78%), Positives = 101/108 (93%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVG+NVQLMVFNP GE GEG+EIVLVNP++ KYS+K++P++EGC
Sbjct: 32 MFDVMYKTDGIGLSAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LSFPGI+A+V RP+SVKIDARDI G RFS+SLS LPAR+FQHE+DHL+
Sbjct: 92 LSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLE 139
>gi|327200562|pdb|3M6Q|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide
Deformylase 1b (Atpdf1b) G41q Mutant In Complex With
Actinonin
gi|335892379|pdb|3PN5|A Chain A, Crystal Structure Of Arabidopsis Thaliana Petide
Deformylase 1b (Atpdf1b) G41q Mutant
Length = 193
Score = 186 bits (473), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 84/108 (77%), Positives = 100/108 (92%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTD IGLSAPQVG+NVQLMVFNP GE GEG+EIVLVNP++ KYS+K++P++EGC
Sbjct: 32 MFDVMYKTDQIGLSAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LSFPGI+A+V RP+SVKIDARDI G RFS+SLS LPAR+FQHE+DHL+
Sbjct: 92 LSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLE 139
>gi|449489461|ref|XP_004158319.1| PREDICTED: peptide deformylase 1B, chloroplastic-like [Cucumis
sativus]
Length = 273
Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 88/108 (81%), Positives = 97/108 (89%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVG+NVQLMVFN VGERGEGEEIVLVNP+V +YS K + + EGC
Sbjct: 113 MFDVMYKTDGIGLSAPQVGVNVQLMVFNSVGERGEGEEIVLVNPKVYRYSKKTVLFNEGC 172
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LSFP I+ADVERPES+KIDARDI+G RF V+LS L ARVFQHEFDHLQ
Sbjct: 173 LSFPMIYADVERPESIKIDARDISGTRFMVNLSGLSARVFQHEFDHLQ 220
>gi|327200563|pdb|3M6R|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide
Deformylase 1b (Atpdf1b) G41m Mutant In Complex With
Actinonin
gi|327200564|pdb|3M6R|B Chain B, Crystal Structure Of Arabidopsis Thaliana Peptide
Deformylase 1b (Atpdf1b) G41m Mutant In Complex With
Actinonin
gi|327200565|pdb|3M6R|C Chain C, Crystal Structure Of Arabidopsis Thaliana Peptide
Deformylase 1b (Atpdf1b) G41m Mutant In Complex With
Actinonin
gi|327200566|pdb|3M6R|D Chain D, Crystal Structure Of Arabidopsis Thaliana Peptide
Deformylase 1b (Atpdf1b) G41m Mutant In Complex With
Actinonin
gi|335892380|pdb|3PN6|A Chain A, Crystal Structure Of Arabidopsis Thaliana Petide
Deformylase 1b (Atpdf1b) G41m Mutant
gi|335892381|pdb|3PN6|B Chain B, Crystal Structure Of Arabidopsis Thaliana Petide
Deformylase 1b (Atpdf1b) G41m Mutant
Length = 193
Score = 186 bits (472), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/108 (77%), Positives = 100/108 (92%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTD IGLSAPQVG+NVQLMVFNP GE GEG+EIVLVNP++ KYS+K++P++EGC
Sbjct: 32 MFDVMYKTDMIGLSAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LSFPGI+A+V RP+SVKIDARDI G RFS+SLS LPAR+FQHE+DHL+
Sbjct: 92 LSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLE 139
>gi|218188726|gb|EEC71153.1| hypothetical protein OsI_02992 [Oryza sativa Indica Group]
Length = 997
Score = 177 bits (449), Expect = 7e-43, Method: Composition-based stats.
Identities = 81/108 (75%), Positives = 93/108 (86%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVG+NVQLMVFNP G +GEGEEIVLVNP V K S +++ YEE C
Sbjct: 826 MFDVMYKTDGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPVVYKMSKRLLVYEESC 885
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LSFPGI+A+V RP++VKIDA+D+ GA+ V LS L ARVFQHEFDHLQ
Sbjct: 886 LSFPGIYANVVRPDNVKIDAQDVTGAKIKVKLSGLSARVFQHEFDHLQ 933
>gi|222618926|gb|EEE55058.1| hypothetical protein OsJ_02762 [Oryza sativa Japonica Group]
Length = 267
Score = 174 bits (442), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 82/108 (75%), Positives = 94/108 (87%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVG+NVQLMVFNP G +GEGEEIVLVNP V K S +++ YEEGC
Sbjct: 109 MFDVMYKTDGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPVVYKMSKRLLVYEEGC 168
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LSFPGI+A+V RP++VKIDA+D+ GA+ V LS L ARVFQHEFDHLQ
Sbjct: 169 LSFPGIYANVVRPDNVKIDAQDVTGAKIKVKLSGLSARVFQHEFDHLQ 216
>gi|326511653|dbj|BAJ91971.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 270
Score = 174 bits (442), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 82/108 (75%), Positives = 95/108 (87%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVG+NVQLMVFNP G +GEGEEIVLVNP V K+S ++ YEEGC
Sbjct: 110 MFDVMYKTDGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPVVYKFSKRLSVYEEGC 169
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LSFPGI+A+V RP++VKIDA+D +GA+ V LS+L ARVFQHEFDHLQ
Sbjct: 170 LSFPGIYANVLRPDTVKIDAQDASGAKIKVKLSELSARVFQHEFDHLQ 217
>gi|115438779|ref|NP_001043669.1| Os01g0637600 [Oryza sativa Japonica Group]
gi|75251983|sp|Q5VNN5.1|DEF1B_ORYSJ RecName: Full=Peptide deformylase 1B, chloroplastic; Short=OsPDF1B;
Short=PDF 1B; Flags: Precursor
gi|55297005|dbj|BAD68576.1| putative polygalacturonase [Oryza sativa Japonica Group]
gi|55297594|dbj|BAD68940.1| putative polygalacturonase [Oryza sativa Japonica Group]
gi|113533200|dbj|BAF05583.1| Os01g0637600 [Oryza sativa Japonica Group]
gi|164633054|gb|ABY64740.1| peptide deformylase 1B1 [Oryza sativa Japonica Group]
gi|215741408|dbj|BAG97903.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 269
Score = 174 bits (440), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 82/108 (75%), Positives = 94/108 (87%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVG+NVQLMVFNP G +GEGEEIVLVNP V K S +++ YEEGC
Sbjct: 109 MFDVMYKTDGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPVVYKMSKRLLVYEEGC 168
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LSFPGI+A+V RP++VKIDA+D+ GA+ V LS L ARVFQHEFDHLQ
Sbjct: 169 LSFPGIYANVVRPDNVKIDAQDVTGAKIKVKLSGLSARVFQHEFDHLQ 216
>gi|222618921|gb|EEE55053.1| hypothetical protein OsJ_02752 [Oryza sativa Japonica Group]
Length = 260
Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/108 (75%), Positives = 93/108 (86%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVG+NVQLMVFNP G +GEGEEIVLVNP V K S +++ YEE C
Sbjct: 89 MFDVMYKTDGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPVVYKMSKRLLVYEESC 148
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LSFPGI+A+V RP++VKIDA+D+ GA+ V LS L ARVFQHEFDHLQ
Sbjct: 149 LSFPGIYANVVRPDNVKIDAQDVTGAKIKVKLSGLSARVFQHEFDHLQ 196
>gi|242058133|ref|XP_002458212.1| hypothetical protein SORBIDRAFT_03g029040 [Sorghum bicolor]
gi|241930187|gb|EES03332.1| hypothetical protein SORBIDRAFT_03g029040 [Sorghum bicolor]
Length = 264
Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/107 (74%), Positives = 93/107 (86%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVG+NVQLMVFNP G +GEGEEIVLVNP V K + +++ +EEGC
Sbjct: 104 MFDVMYKTDGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPVVYKSAKRLLVFEEGC 163
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFPGI+ +V RPESVKI+A+D+ GA+ V LS LPARVFQHEFDHL
Sbjct: 164 LSFPGIYGNVLRPESVKIEAQDVTGAKIKVKLSGLPARVFQHEFDHL 210
>gi|357135653|ref|XP_003569423.1| PREDICTED: peptide deformylase 1B, chloroplastic-like [Brachypodium
distachyon]
Length = 269
Score = 171 bits (434), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/108 (74%), Positives = 92/108 (85%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVG+NVQLMVFNP G GEGEEI+LVNP V K+S +++ YEEGC
Sbjct: 109 MFDVMYKTDGIGLSAPQVGVNVQLMVFNPAGVEGEGEEIILVNPVVYKFSKRLLVYEEGC 168
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LSFPGIH +V RP++VKI A+D+ GA+ V LS L ARVFQHEFDHLQ
Sbjct: 169 LSFPGIHGNVLRPDTVKIAAQDVTGAKIKVRLSALAARVFQHEFDHLQ 216
>gi|413950732|gb|AFW83381.1| hypothetical protein ZEAMMB73_684024 [Zea mays]
gi|413950733|gb|AFW83382.1| hypothetical protein ZEAMMB73_684024 [Zea mays]
Length = 264
Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 77/107 (71%), Positives = 92/107 (85%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVG+NVQLMVFNP G +GEGEEIVLVNP + K + +++ +EEGC
Sbjct: 104 MFDVMYKTDGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPVIYKSAKRLLVFEEGC 163
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFPGI+ +V RPESVKI+A+D+ GA+ V LS + ARVFQHEFDHL
Sbjct: 164 LSFPGIYGNVVRPESVKIEAQDVTGAKIKVKLSGIHARVFQHEFDHL 210
>gi|116787193|gb|ABK24406.1| unknown [Picea sitchensis]
Length = 290
Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 73/108 (67%), Positives = 90/108 (83%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD+MYKTDG+GLSAPQVG+NVQLMVFNP GE G+GEE++LVNP + KYS + + EGC
Sbjct: 140 MFDLMYKTDGVGLSAPQVGVNVQLMVFNPAGESGKGEEVILVNPEIYKYSKRKEVFTEGC 199
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LSFP I+ADVERP SVKI+A D+ G +F +SL + AR+FQHE+DHLQ
Sbjct: 200 LSFPEIYADVERPMSVKIEAWDVKGKKFILSLKEFNARIFQHEYDHLQ 247
>gi|55297586|dbj|BAD68932.1| peptide deformylase-like [Oryza sativa Japonica Group]
Length = 326
Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/103 (72%), Positives = 88/103 (85%)
Query: 6 YKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPG 65
Y+TDGIGLSAPQVG+NVQLMVFNP G +GEGEEIVLVNP V K S +++ YEE CLSFPG
Sbjct: 171 YRTDGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPVVYKMSKRLLVYEESCLSFPG 230
Query: 66 IHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
I+A+V RP++VKIDA+D+ GA+ V LS L ARVFQHEFDHLQ
Sbjct: 231 IYANVVRPDNVKIDAQDVTGAKIKVKLSGLSARVFQHEFDHLQ 273
>gi|168055848|ref|XP_001779935.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668649|gb|EDQ55252.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 202
Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 71/118 (60%), Positives = 90/118 (76%), Gaps = 10/118 (8%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M DVMYKTDG+GL+APQVG+NV+LMV+NP GERG G+E VLVNPR+ KY ++EGC
Sbjct: 42 MLDVMYKTDGVGLAAPQVGVNVRLMVYNPSGERGSGKEYVLVNPRIVKYGKSRDLFDEGC 101
Query: 61 LSFP----------GIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LSFP I A+VERP+SV+IDA+DI G +FS++L D AR+FQHE+DHL+
Sbjct: 102 LSFPVLERGPNQSLTIEAEVERPKSVRIDAQDIKGKKFSINLKDFQARIFQHEYDHLE 159
>gi|307109178|gb|EFN57416.1| hypothetical protein CHLNCDRAFT_17300, partial [Chlorella
variabilis]
Length = 169
Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/107 (61%), Positives = 86/107 (80%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+VMY+ DG+GL+APQVG+NV+LMVFN GE+G G+EIVLVNP++ +EEGC
Sbjct: 42 MFEVMYEDDGVGLAAPQVGVNVRLMVFNEAGEKGAGDEIVLVNPQIINQGKARNMFEEGC 101
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFP I+ADVERP VK+ A+D++G +F+VSL PAR+FQHE+DHL
Sbjct: 102 LSFPNIYADVERPSKVKVKAQDLSGKKFTVSLIGFPARIFQHEYDHL 148
>gi|303271927|ref|XP_003055325.1| peptide deformylase [Micromonas pusilla CCMP1545]
gi|226463299|gb|EEH60577.1| peptide deformylase [Micromonas pusilla CCMP1545]
Length = 210
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 62/107 (57%), Positives = 87/107 (81%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY++DG+GL+APQVG+N +LMV+N GERG+G E+V+VNP++ K+S + +EEGC
Sbjct: 68 MFAKMYESDGVGLAAPQVGVNYRLMVYNEAGERGKGAEVVMVNPKIVKFSKEKDMFEEGC 127
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFP I+ADVERP +V I+A+++NG +F ++L ARVFQHE+DHL
Sbjct: 128 LSFPAIYADVERPTAVTIEAQNVNGKKFKMTLDGFQARVFQHEYDHL 174
>gi|302766631|ref|XP_002966736.1| hypothetical protein SELMODRAFT_85358 [Selaginella moellendorffii]
gi|300166156|gb|EFJ32763.1| hypothetical protein SELMODRAFT_85358 [Selaginella moellendorffii]
Length = 198
Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/108 (57%), Positives = 81/108 (75%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M DVMY+TDG+GLSAPQVG+N +LMVFNP GERG+G+E V VNP + K+ + EGC
Sbjct: 42 MLDVMYRTDGVGLSAPQVGVNARLMVFNPEGERGKGKEYVFVNPMIVKFGKEREADREGC 101
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LSF ADVERP S++++A+DING +F + AR+FQHE+DHL+
Sbjct: 102 LSFYSAQADVERPISIRVEAQDINGKKFGTTFRGWTARIFQHEYDHLE 149
>gi|302792493|ref|XP_002978012.1| hypothetical protein SELMODRAFT_108250 [Selaginella moellendorffii]
gi|300154033|gb|EFJ20669.1| hypothetical protein SELMODRAFT_108250 [Selaginella moellendorffii]
Length = 198
Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/108 (57%), Positives = 81/108 (75%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M DVMY+TDG+GLSAPQVG+N +LMVFNP GERG+G+E V VNP + K+ + EGC
Sbjct: 42 MLDVMYRTDGVGLSAPQVGVNARLMVFNPEGERGKGKEYVFVNPMIVKFGKEREADREGC 101
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LSF ADVERP S++++A+DING +F + AR+FQHE+DHL+
Sbjct: 102 LSFYSAQADVERPISIRVEAQDINGKKFGTTFRGWTARIFQHEYDHLE 149
>gi|255070681|ref|XP_002507422.1| peptide deformylase, chloroplast precursor [Micromonas sp. RCC299]
gi|226522697|gb|ACO68680.1| peptide deformylase, chloroplast precursor [Micromonas sp. RCC299]
Length = 257
Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 85/107 (79%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF +MY T+G+GL+APQVG+N ++MV+N GE G G+E+VLVNP++ K+S +EEGC
Sbjct: 115 MFKIMYDTEGVGLAAPQVGVNYRMMVYNEAGEPGRGKEVVLVNPKIVKFSKTKDLFEEGC 174
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFP I+ADVERP SV+++A+++ G +F ++L ARVFQHE+DHL
Sbjct: 175 LSFPKIYADVERPTSVQVEAQNLRGKKFKMTLDGFEARVFQHEYDHL 221
>gi|424513394|emb|CCO66016.1| peptide deformylase [Bathycoccus prasinos]
Length = 311
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 62/107 (57%), Positives = 85/107 (79%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF +MY+T G GL+APQVG+N +LMV+N G GEG+E+VLVNP+++K+S + +EEGC
Sbjct: 170 MFKIMYETVGCGLAAPQVGVNYRLMVYNEAGAPGEGKEVVLVNPKISKFSKQKDFFEEGC 229
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFP I+A+VERP VKI+A+D+ G +F ++L ARVFQHE+DHL
Sbjct: 230 LSFPKIYAEVERPMGVKIEAQDVEGNKFKMTLEGFEARVFQHEYDHL 276
>gi|145345192|ref|XP_001417104.1| Peptide deformylase, organellar [Ostreococcus lucimarinus CCE9901]
gi|144577330|gb|ABO95397.1| Peptide deformylase, organellar [Ostreococcus lucimarinus CCE9901]
Length = 240
Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 82/107 (76%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF +MY+T G GL+APQVG+N ++MV+N GE G+G E+VL NP + K+S + +EEGC
Sbjct: 97 MFKIMYETVGCGLAAPQVGVNYRMMVYNEAGEPGQGREVVLCNPEIVKFSKEKDLFEEGC 156
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFP ++ADVERP V+I+A+++ G +F ++L ARVFQHE+DHL
Sbjct: 157 LSFPKMYADVERPIGVQIEAQNLKGKKFKMTLEGFEARVFQHEYDHL 203
>gi|384246587|gb|EIE20076.1| peptide deformylase [Coccomyxa subellipsoidea C-169]
Length = 186
Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 80/109 (73%), Gaps = 2/109 (1%)
Query: 1 MFDVMYK-TDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
M +VMY DG+GL+APQVG+NV++MV+NP G RG+ EE +LVNPR+ S K +EEG
Sbjct: 40 MLEVMYNGDDGVGLAAPQVGVNVRMMVYNPTGRRGD-EEFILVNPRILSTSGKREVHEEG 98
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
CLSFP + A+VERP VK+ A+D+ G ++L+ AR+F HE+DHLQ
Sbjct: 99 CLSFPRLFANVERPHKVKVRAQDVKGDTLMLTLNGWQARIFLHEYDHLQ 147
>gi|32307482|gb|AAP79146.1| peptide deformylase [Bigelowiella natans]
Length = 315
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/108 (54%), Positives = 71/108 (65%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGE-EIVLVNPRVNKYSNKMIPYEEG 59
MFDVMY DG GL+APQVGIN +LMVFNP G+R + + E+VL NP + + + EG
Sbjct: 153 MFDVMYDDDGCGLAAPQVGINYRLMVFNPQGDRRKKDTEMVLANPEIISSGEEKDWFREG 212
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLSFPGI VERP V I A+D+ G L ARVFQHE+DHL
Sbjct: 213 CLSFPGIRGQVERPTKVLIRAQDVKGEDIEFELEGFTARVFQHEYDHL 260
>gi|297720233|ref|NP_001172478.1| Os01g0636600 [Oryza sativa Japonica Group]
gi|255673494|dbj|BAH91208.1| Os01g0636600, partial [Oryza sativa Japonica Group]
Length = 198
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/70 (78%), Positives = 62/70 (88%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVG+NVQLMVFNP G +GEGEEIVLVNP V K S +++ YEE C
Sbjct: 113 MFDVMYKTDGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPVVYKMSKRLLVYEESC 172
Query: 61 LSFPGIHADV 70
LSFPGI+A+V
Sbjct: 173 LSFPGIYANV 182
>gi|159463814|ref|XP_001690137.1| peptide deformylase [Chlamydomonas reinhardtii]
gi|158284125|gb|EDP09875.1| peptide deformylase [Chlamydomonas reinhardtii]
Length = 248
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 74/109 (67%), Gaps = 1/109 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++MY+ DG+GL+APQVG+NV+LMVFNP+G G E +LVNP + + EEGC
Sbjct: 87 MIEIMYQDDGVGLAAPQVGVNVRLMVFNPMGRDKPGNESILVNPEIVEQLGGKELGEEGC 146
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSD-LPARVFQHEFDHLQ 108
LSFP I+ DVER + + A D G ++L+D AR+FQHEFDHLQ
Sbjct: 147 LSFPRIYGDVERSRQINVKALDATGQPVKLTLTDPWVARIFQHEFDHLQ 195
>gi|449015929|dbj|BAM79331.1| polypeptide deformylase [Cyanidioschyzon merolae strain 10D]
Length = 264
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 72/108 (66%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE-RGEGEEIVLVNPRVNKYSNKMIPYEEG 59
MF VMY + G+GL+APQVGIN ++MVFNP G+ R E+ LVNPR+ + S EG
Sbjct: 122 MFKVMYASRGVGLAAPQVGINKRVMVFNPKGDPRAWLSEVALVNPRIIERSEATEEGMEG 181
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLSFPG+ D+ER +K++A NG RF V AR+FQHE+DHL
Sbjct: 182 CLSFPGVSGDIERSLMIKVEAMKPNGKRFQVKYQGWTARIFQHEYDHL 229
>gi|302844969|ref|XP_002954024.1| hypothetical protein VOLCADRAFT_45493 [Volvox carteri f.
nagariensis]
gi|300260836|gb|EFJ45053.1| hypothetical protein VOLCADRAFT_45493 [Volvox carteri f.
nagariensis]
Length = 177
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M +VMY+ DG+GL+APQVG+N++LMVFNP G G E +LVNP + + EEGC
Sbjct: 42 MIEVMYQDDGVGLAAPQVGVNIRLMVFNPAGRDRPGNESILVNPEIVEQLGGKELGEEGC 101
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSD-LPARVFQHEFDHLQ 108
LSFP I+ DVER + + A D NG + L+D AR+FQHE+DHLQ
Sbjct: 102 LSFPRIYGDVERSRQITVKALDANGQPVRLQLTDPWVARIFQHEYDHLQ 150
>gi|443327819|ref|ZP_21056427.1| peptide deformylase [Xenococcus sp. PCC 7305]
gi|442792548|gb|ELS02027.1| peptide deformylase [Xenococcus sp. PCC 7305]
Length = 187
Score = 110 bits (275), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 71/107 (66%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG+N QL+V + ++ + +VL+NP++ + S ++ EEGC
Sbjct: 48 MLQTMYSQDGIGLAAPQVGVNKQLIVVDCELDKPDSPPLVLINPKITRSSKQICSAEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV RPE++++ +D NG + DL ARV QHE DHL
Sbjct: 108 LSIPGVYLDVTRPEAIEVSFKDENGKPRKIQAKDLLARVIQHEMDHL 154
>gi|323448077|gb|EGB03980.1| hypothetical protein AURANDRAFT_33186 [Aureococcus anophagefferens]
Length = 225
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 72/112 (64%), Gaps = 1/112 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGE-GEEIVLVNPRVNKYSNKMIPYEEG 59
MFD+MY G+GL+APQVG+N +LMVFNP G+ G+E+ L NPR+ S ++ +EG
Sbjct: 84 MFDLMYAAGGVGLAAPQVGVNARLMVFNPSGDAARTGDEVALANPRIVAASAELEVGDEG 143
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQVFV 111
CLSFPG+ V R V++ D+ G S + + ARVFQHE+DHL V
Sbjct: 144 CLSFPGMGGPVARHAWVEVAGLDLEGRAISRAYAGWDARVFQHEYDHLDGVV 195
>gi|254424040|ref|ZP_05037758.1| peptide deformylase [Synechococcus sp. PCC 7335]
gi|196191529|gb|EDX86493.1| peptide deformylase [Synechococcus sp. PCC 7335]
Length = 187
Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 70/107 (65%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG+N QL+V + E +VLVNP++ +YS+++ +EGC
Sbjct: 48 MLQTMYSEDGIGLAAPQVGVNKQLLVIDADPENEAASALVLVNPKIIRYSDELAAGQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV RP ++++ +D NG + DL ARV QHE DHL
Sbjct: 108 LSIPGVYLDVIRPAAIEVSFKDENGRPRKLKADDLLARVIQHEMDHL 154
>gi|170078943|ref|YP_001735581.1| peptide deformylase [Synechococcus sp. PCC 7002]
gi|238689048|sp|B1XJP0.1|DEF_SYNP2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|169886612|gb|ACB00326.1| peptide deformylase [Synechococcus sp. PCC 7002]
Length = 187
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 68/107 (63%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY + GIGL+APQVG+N +L+V + E +VL+NP + K+ ++ P+EEGC
Sbjct: 48 MLQTMYSSQGIGLAAPQVGVNKRLIVIDTDPENPANAPLVLINPEIKKFGQQLCPFEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG+H DV RP+ +++ RD G + S L +RV QHE DHL
Sbjct: 108 LSIPGVHLDVIRPDEIEVSYRDEQGKPKRIKASGLLSRVIQHEIDHL 154
>gi|159463808|ref|XP_001690134.1| predicted protein [Chlamydomonas reinhardtii]
gi|158284122|gb|EDP09872.1| predicted protein [Chlamydomonas reinhardtii]
Length = 250
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/101 (52%), Positives = 68/101 (67%), Gaps = 1/101 (0%)
Query: 9 DGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHA 68
DG+GL+APQVG+NV+LMVFNP+G G E +LVNP + + EEGCLSFP I+
Sbjct: 97 DGVGLAAPQVGVNVRLMVFNPMGRDKPGNESILVNPEIVEQLGGKELGEEGCLSFPRIYG 156
Query: 69 DVERPESVKIDARDINGARFSVSLSD-LPARVFQHEFDHLQ 108
DVER + + A D G ++L+D AR+FQHEFDHLQ
Sbjct: 157 DVERSRQINVKALDATGQPVKLTLTDPWVARIFQHEFDHLQ 197
>gi|376007137|ref|ZP_09784341.1| Peptide deformylase 1 (Polypeptide deformylase 1) [Arthrospira sp.
PCC 8005]
gi|375324513|emb|CCE20094.1| Peptide deformylase 1 (Polypeptide deformylase 1) [Arthrospira sp.
PCC 8005]
Length = 187
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 70/108 (64%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG++ Q++V + + +VL+NP + K S ++ P++EGC
Sbjct: 48 MLQTMYSADGIGLAAPQVGVHKQVIVIDCEPDNAATPPLVLINPTIKKSSRQLSPFQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG++ DV RPE V++ +D NG S+ ++L R QHE DHLQ
Sbjct: 108 LSIPGVYMDVVRPEEVEVAFKDENGRPRSILATELLCRAIQHEIDHLQ 155
>gi|209526681|ref|ZP_03275205.1| peptide deformylase [Arthrospira maxima CS-328]
gi|209492917|gb|EDZ93248.1| peptide deformylase [Arthrospira maxima CS-328]
Length = 187
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 70/108 (64%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG++ Q++V + + +VL+NP + K S ++ P++EGC
Sbjct: 48 MLQTMYSADGIGLAAPQVGVHKQVIVIDCEPDNAATPPLVLINPTIKKSSRELSPFQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG++ DV RPE V++ +D NG S+ ++L R QHE DHLQ
Sbjct: 108 LSIPGVYMDVVRPEEVEVTFKDENGRPRSILATELLCRAIQHEIDHLQ 155
>gi|423064021|ref|ZP_17052811.1| peptide deformylase [Arthrospira platensis C1]
gi|406714438|gb|EKD09603.1| peptide deformylase [Arthrospira platensis C1]
Length = 181
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 70/108 (64%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG++ Q++V + + +VL+NP + K S ++ P++EGC
Sbjct: 42 MLQTMYSADGIGLAAPQVGVHKQVIVIDCEPDNAATPPLVLINPTIKKSSRELSPFQEGC 101
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG++ DV RPE V++ +D NG S+ ++L R QHE DHLQ
Sbjct: 102 LSIPGVYMDVVRPEEVEVTFKDENGRPRSILATELLCRAIQHEIDHLQ 149
>gi|452825653|gb|EME32648.1| peptide deformylase [Galdieria sulphuraria]
Length = 269
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 71/108 (65%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEG-EEIVLVNPRVNKYSNKMIPYEEG 59
MF VMY G+GL+APQVGIN +LMV+NP G+ ++V+VNP++ S+K + EG
Sbjct: 126 MFQVMYADRGVGLAAPQVGINQRLMVYNPTGKPSSFLSQVVMVNPKIVDCSDKKVVDLEG 185
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLSFPGI V R E V+++A G + + L AR+FQHE+DHL
Sbjct: 186 CLSFPGIAGKVSRHEWVRVEAFKPGGKKIKLKLEGWQARIFQHEYDHL 233
>gi|409992195|ref|ZP_11275399.1| peptide deformylase [Arthrospira platensis str. Paraca]
gi|291565688|dbj|BAI87960.1| peptide deformylase [Arthrospira platensis NIES-39]
gi|409936931|gb|EKN78391.1| peptide deformylase [Arthrospira platensis str. Paraca]
Length = 187
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 70/108 (64%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG++ Q++V + + +VL+NP + K S ++ P++EGC
Sbjct: 48 MLQTMYSADGIGLAAPQVGVHKQVIVIDCEPDNAATPPLVLINPTIKKSSRELSPFQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG++ DV RPE V++ +D NG ++ ++L R QHE DHLQ
Sbjct: 108 LSIPGVYMDVVRPEEVEVTFKDENGRPRTILATELLCRAIQHEIDHLQ 155
>gi|284929247|ref|YP_003421769.1| peptide deformylase [cyanobacterium UCYN-A]
gi|284809691|gb|ADB95388.1| peptide deformylase [cyanobacterium UCYN-A]
Length = 183
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 71/107 (66%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY ++GIGL++ QVGI+ QL+V + E ++L+NP++N YS ++ EEGC
Sbjct: 44 MLQTMYSSNGIGLASTQVGIHKQLIVIDCEPELSTNAPLILINPKINYYSQELCVMEEGC 103
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV RPE +++ ++ NG +S +DL ARV QHE DHL
Sbjct: 104 LSIPGVYFDVIRPEMIQVSFKNENGRPCQISATDLLARVIQHEIDHL 150
>gi|124506707|ref|XP_001351951.1| formylmethionine deformylase, putative [Plasmodium falciparum 3D7]
gi|23504979|emb|CAD51762.1| formylmethionine deformylase, putative [Plasmodium falciparum 3D7]
Length = 241
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 71/108 (65%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE-RGEGEEIVLVNPRVNKYSNKMIPYEEG 59
MFD+MY++ GIGLSAPQV I+ +++V+N + E R E E + +NP + + S + EG
Sbjct: 96 MFDIMYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPSIVEQSLVKLKLIEG 155
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLSFPGI VERP V I DING + L + +R+FQHEFDHL
Sbjct: 156 CLSFPGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHL 203
>gi|40889670|pdb|1RL4|A Chain A, Plasmodium Falciparum Peptide Deformylase Complex With
Inhibitor
gi|40889671|pdb|1RL4|B Chain B, Plasmodium Falciparum Peptide Deformylase Complex With
Inhibitor
Length = 188
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 71/108 (65%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE-RGEGEEIVLVNPRVNKYSNKMIPYEEG 59
MFD+MY++ GIGLSAPQV I+ +++V+N + E R E E + +NP + + S + EG
Sbjct: 40 MFDIMYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPSIVEQSLVKLKLIEG 99
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLSFPGI VERP V I DING + L + +R+FQHEFDHL
Sbjct: 100 CLSFPGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHL 147
>gi|434385409|ref|YP_007096020.1| peptide deformylase [Chamaesiphon minutus PCC 6605]
gi|428016399|gb|AFY92493.1| peptide deformylase [Chamaesiphon minutus PCC 6605]
Length = 190
Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 69/107 (64%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGI+ QL+V + ++ E ++L+NP + KY + +EGC
Sbjct: 48 MLQTMYSADGIGLAAPQVGIHKQLIVIDCELDKPEAPPLILINPTIKKYGKALAKDQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV+RPE++++ RD +G ++ L AR QHE DHL
Sbjct: 108 LSIPGVYLDVQRPETLELAYRDESGRPRTLKADGLLARAIQHEMDHL 154
>gi|218248691|ref|YP_002374062.1| peptide deformylase [Cyanothece sp. PCC 8801]
gi|257061756|ref|YP_003139644.1| peptide deformylase [Cyanothece sp. PCC 8802]
gi|218169169|gb|ACK67906.1| peptide deformylase [Cyanothece sp. PCC 8801]
gi|256591922|gb|ACV02809.1| peptide deformylase [Cyanothece sp. PCC 8802]
Length = 187
Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 71/107 (66%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY ++GIGL+APQVG++ QL+V + + I+L+NP++ ++S ++ EEGC
Sbjct: 48 MLQTMYSSNGIGLAAPQVGVHKQLIVVDCDPNDPANQPIILINPQITRFSQELCVVEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV RP+++++ RD G + +DL ARV QHE DHL
Sbjct: 108 LSIPGVYLDVTRPKAIEVSFRDEQGKPRKLQATDLLARVIQHEMDHL 154
>gi|17230571|ref|NP_487119.1| peptide deformylase [Nostoc sp. PCC 7120]
gi|23396564|sp|Q8YSK6.1|DEF1_ANASP RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|17132173|dbj|BAB74778.1| polypeptide deformylase [Nostoc sp. PCC 7120]
Length = 187
Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 72/113 (63%), Gaps = 2/113 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +DGIGL+APQVGIN QL+V + + ++L+NP + + S ++ +EGC
Sbjct: 48 MLQTMYSSDGIGLAAPQVGINKQLIVIDCEPDNPANPPLILINPTIKQVSREICSAQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PG++ DV+RPE V++ +D NG ++ +DL R QHE DHL VFV
Sbjct: 108 LSIPGVYMDVKRPEVVEVAYKDENGRPQTLKATDLLGRCIQHEMDHLNGVVFV 160
>gi|75907053|ref|YP_321349.1| peptide deformylase [Anabaena variabilis ATCC 29413]
gi|75700778|gb|ABA20454.1| peptide deformylase [Anabaena variabilis ATCC 29413]
Length = 187
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 71/113 (62%), Gaps = 2/113 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGIN QL+V + + +VL+NP + + S ++ +EGC
Sbjct: 48 MLQTMYSNDGIGLAAPQVGINKQLIVIDCEPDNPANPPLVLINPTIKQVSREICSAQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PG++ DV+RPE V++ +D NG ++ +DL R QHE DHL VFV
Sbjct: 108 LSIPGVYMDVKRPEVVEVAYKDENGRPQTLKATDLLGRCIQHEMDHLNGVVFV 160
>gi|428301708|ref|YP_007140014.1| peptide deformylase [Calothrix sp. PCC 6303]
gi|428238252|gb|AFZ04042.1| peptide deformylase [Calothrix sp. PCC 6303]
Length = 187
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 74/113 (65%), Gaps = 2/113 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +DGIGL+APQVGI+ QL+V + ++ E + +VL+NP V + S ++ +EGC
Sbjct: 48 MLQTMYSSDGIGLAAPQVGIHKQLIVIDLEPDKPEHQPLVLINPVVKQVSKEVCAAQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PG++ DV RP S+++ +D NG ++ +DL AR HE DHL VFV
Sbjct: 108 LSIPGVYLDVTRPLSLELSYKDENGTPKTLKATDLLARCILHEMDHLNGVVFV 160
>gi|397619820|gb|EJK65417.1| hypothetical protein THAOC_13720 [Thalassiosira oceanica]
Length = 208
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 77/112 (68%), Gaps = 1/112 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE-RGEGEEIVLVNPRVNKYSNKMIPYEEG 59
MF VMY T+G+GL+APQVGIN +LMV+N G+ + +E + VNP++ +YS+ EG
Sbjct: 67 MFLVMYATNGVGLAAPQVGINKRLMVYNDTGDPKKWMKENIFVNPKIVEYSDAKDIETEG 126
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQVFV 111
CLSFP ++ DV+R + +KI+A+++ G + ARVFQHE+DHL+ V
Sbjct: 127 CLSFPDMNGDVQRSKWIKIEAQNLKGKKIKKKFKGWEARVFQHEYDHLERTV 178
>gi|427417991|ref|ZP_18908174.1| peptide deformylase [Leptolyngbya sp. PCC 7375]
gi|425760704|gb|EKV01557.1| peptide deformylase [Leptolyngbya sp. PCC 7375]
Length = 185
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 68/107 (63%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGI+ Q++V + E + ++L+NP++ + S +M +EGC
Sbjct: 46 MLQTMYSEDGIGLAAPQVGIHKQILVVDTDPEEAANKPLILINPKITRNSKEMACGQEGC 105
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG+ DV RP ++++ +D NG + DL ARV QHE DHL
Sbjct: 106 LSIPGVFLDVIRPAAIEVSYKDENGRPQKIKADDLLARVIQHEMDHL 152
>gi|223994725|ref|XP_002287046.1| dubious peptide deformylase [Thalassiosira pseudonana CCMP1335]
gi|220978361|gb|EED96687.1| dubious peptide deformylase [Thalassiosira pseudonana CCMP1335]
Length = 180
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEG-EEIVLVNPRVNKYSNKMIPYEEG 59
MF VMY T+G GL+APQVGIN +LMV+N G+ +E+++VNP++ ++S+ +EG
Sbjct: 39 MFLVMYATNGAGLAAPQVGINKRLMVYNESGDSKRWMQEVIMVNPKIVEFSSATDIEQEG 98
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLSFP + DV+R + +K++A+++ G + + AR+FQHE+DHL
Sbjct: 99 CLSFPEMGGDVQRSKWIKVEAQNLKGKKIKKKFTGWEARIFQHEYDHL 146
>gi|401412227|ref|XP_003885561.1| Peptide deformylase, related [Neospora caninum Liverpool]
gi|325119980|emb|CBZ55533.1| Peptide deformylase, related [Neospora caninum Liverpool]
Length = 374
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 50/109 (45%), Positives = 71/109 (65%), Gaps = 1/109 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE-RGEGEEIVLVNPRVNKYSNKMIPYEEG 59
+F +MY+ GIGL+APQVG+++Q++V+NP G R +E V +NPR+ S ++ EG
Sbjct: 256 LFAIMYRDGGIGLAAPQVGLSLQMIVWNPTGGFREVSQERVFLNPRILSLSGPLVSDVEG 315
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
CLS PG+ A VERP ++ + G + V+LS L ARV QHE DHL
Sbjct: 316 CLSVPGVFAPVERPMHARVRYTSLEGDQHEVNLSGLEARVVQHEIDHLH 364
>gi|113474637|ref|YP_720698.1| peptide deformylase [Trichodesmium erythraeum IMS101]
gi|110165685|gb|ABG50225.1| peptide deformylase [Trichodesmium erythraeum IMS101]
Length = 187
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 67/108 (62%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQV + Q++V + +VL+NP + KYSN + ++EGC
Sbjct: 48 MLQTMYTADGIGLAAPQVNVQKQVIVIDCEPTNSATPPLVLINPTIKKYSNDICLFQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG++ DV+RP +++ +D NG ++ +L +R QHE DHLQ
Sbjct: 108 LSIPGVYLDVQRPSEIEVAYKDENGRPQTLQAQELLSRAIQHEMDHLQ 155
>gi|434399992|ref|YP_007133996.1| peptide deformylase [Stanieria cyanosphaera PCC 7437]
gi|428271089|gb|AFZ37030.1| peptide deformylase [Stanieria cyanosphaera PCC 7437]
Length = 187
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 69/107 (64%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG+N QL+V + + + +VL+NP++ ++S++ EEGC
Sbjct: 48 MLQTMYSADGIGLAAPQVGVNKQLIVIDCELDNPDHPPLVLINPKITRFSSQECITEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ +V RPE+V++ +D G + S L AR QHE DHL
Sbjct: 108 LSIPGVYLEVTRPEAVEVSFKDEQGKPRKLQASGLLARAIQHEMDHL 154
>gi|126661353|ref|ZP_01732418.1| peptide deformylase [Cyanothece sp. CCY0110]
gi|126617360|gb|EAZ88164.1| peptide deformylase [Cyanothece sp. CCY0110]
Length = 187
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 69/107 (64%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY + GIGL+APQV I+ QL+V + + E ++L+NP++ + S ++ EEGC
Sbjct: 48 MLQTMYSSHGIGLAAPQVAIHKQLIVIDCEPDNPENPPLILINPKITRVSEELCVVEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV RP+++++ +D G + +DL ARV QHE DHL
Sbjct: 108 LSIPGVYLDVTRPKTIEVSFKDEQGKPRKIQATDLLARVIQHEMDHL 154
>gi|442570638|pdb|4DR9|A Chain A, Crystal Structure Of A Peptide Deformylase From
Synechococcus Elongatus In Complex With Actinonin
gi|442570639|pdb|4DR9|B Chain B, Crystal Structure Of A Peptide Deformylase From
Synechococcus Elongatus In Complex With Actinonin
gi|442570640|pdb|4DR9|C Chain C, Crystal Structure Of A Peptide Deformylase From
Synechococcus Elongatus In Complex With Actinonin
gi|442570641|pdb|4DR9|D Chain D, Crystal Structure Of A Peptide Deformylase From
Synechococcus Elongatus In Complex With Actinonin
Length = 192
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 67/107 (62%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGIN QL+V + E + +VL+NP++ + + + +EGC
Sbjct: 50 MLQTMYSADGIGLAAPQVGINKQLIVIDLELEDEQAPPLVLINPKIERTAGDLEQCQEGC 109
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DVERPE V++ +D NG + L AR QHE DHL
Sbjct: 110 LSIPGVYLDVERPEIVEVSYKDENGRPQRLVADGLLARCIQHEMDHL 156
>gi|56750222|ref|YP_170923.1| peptide deformylase [Synechococcus elongatus PCC 6301]
gi|81300149|ref|YP_400357.1| peptide deformylase [Synechococcus elongatus PCC 7942]
gi|56685181|dbj|BAD78403.1| polypeptide deformylase [Synechococcus elongatus PCC 6301]
gi|81169030|gb|ABB57370.1| peptide deformylase [Synechococcus elongatus PCC 7942]
Length = 192
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 67/107 (62%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGIN QL+V + E + +VL+NP++ + + + +EGC
Sbjct: 50 MLQTMYSADGIGLAAPQVGINKQLIVIDLELEDEQAPPLVLINPKIERTAGDLEQCQEGC 109
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DVERPE V++ +D NG + L AR QHE DHL
Sbjct: 110 LSIPGVYLDVERPEIVEVSYKDENGRPQRLVADGLLARCIQHEMDHL 156
>gi|307150582|ref|YP_003885966.1| peptide deformylase [Cyanothece sp. PCC 7822]
gi|306980810|gb|ADN12691.1| peptide deformylase [Cyanothece sp. PCC 7822]
Length = 187
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 69/107 (64%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +GIGL+APQV +N QL+V + + + I+L+NP++ +S + +EEGC
Sbjct: 48 MLQTMYSANGIGLAAPQVAVNKQLLVVDCEPDNATNQPIILINPQITHFSRDLCQFEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV RP+++++ +D +G + + L ARV QHE DHL
Sbjct: 108 LSIPGVYLDVVRPKAIEVSFKDESGRPKKLKATGLLARVIQHEMDHL 154
>gi|37521797|ref|NP_925174.1| peptide deformylase [Gloeobacter violaceus PCC 7421]
gi|39930959|sp|Q7NIF5.1|DEF2_GLOVI RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
Full=Polypeptide deformylase 2
gi|35212795|dbj|BAC90169.1| polypeptide deformylase [Gloeobacter violaceus PCC 7421]
Length = 187
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 67/107 (62%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG+N +++V + E +VL+NP + ++S+ + +EGC
Sbjct: 48 MLQTMYSADGIGLAAPQVGVNKRMIVVDIDPENAARPPLVLINPLIKQFSSDLAVDQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P I+ADV RPE V RD+NG ++ + L AR QHE DHL
Sbjct: 108 LSVPSIYADVRRPERVVATYRDLNGRPVTLEATGLLARCIQHEIDHL 154
>gi|428202949|ref|YP_007081538.1| peptide deformylase [Pleurocapsa sp. PCC 7327]
gi|427980381|gb|AFY77981.1| peptide deformylase [Pleurocapsa sp. PCC 7327]
Length = 188
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 70/108 (64%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY ++G+GL+APQVGI+ QL+V + + +VL+NP++ Y +++ +EEGC
Sbjct: 48 MLQTMYSSNGVGLAAPQVGIHKQLIVIDCEPDNPANPPLVLINPQITSYGSELCDFEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG++ DV RPE++++ +D G + S ARV QHE DHL+
Sbjct: 108 LSIPGVYMDVTRPETIEVSFKDEQGRPRKLKASGFLARVIQHEMDHLE 155
>gi|386347804|ref|YP_006046053.1| Peptide deformylase [Spirochaeta thermophila DSM 6578]
gi|339412771|gb|AEJ62336.1| Peptide deformylase [Spirochaeta thermophila DSM 6578]
Length = 163
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 71/107 (66%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD+M++ +GIGL+APQVGI+ + + + EGE +V +NP + S ++ +EEGC
Sbjct: 32 MFDLMHEANGIGLAAPQVGISQRFFICHV----PEGEPLVFINPEITATSPELATFEEGC 87
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P I+ADV RP +V++ A ++ G F + L ARV QHEFDHL
Sbjct: 88 LSIPQIYADVVRPAAVEVSAWNLQGKPFRMEADGLLARVIQHEFDHL 134
>gi|428181609|gb|EKX50472.1| hypothetical protein GUITHDRAFT_66830, partial [Guillardia theta
CCMP2712]
Length = 171
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 76/118 (64%), Gaps = 10/118 (8%)
Query: 1 MFDVMYKTDGIGLSAPQ---VGINVQLMVFNPVGERGEG-EEIVLVNPRVNKYSNKMIPY 56
MF VMY + G+GL+APQ VGIN ++MVFNP G++ + +EI L+NP++ + S
Sbjct: 34 MFLVMYASRGVGLAAPQAKQVGINKRIMVFNPEGDKKKWLQEIALINPKIVEMSEGTDVE 93
Query: 57 EEGCLSFPGIHADVERPESVKIDARDING------ARFSVSLSDLPARVFQHEFDHLQ 108
E CLSFPG+ V R + +KI+A+D+ G AR + + ARVFQHE+DHL+
Sbjct: 94 TEACLSFPGMQGKVRRHKWIKIEAQDLKGKTIKKKARNFLQFTGWTARVFQHEYDHLE 151
>gi|83273759|ref|XP_729539.1| polypeptide deformylase [Plasmodium yoelii yoelii 17XNL]
gi|23487628|gb|EAA21104.1| polypeptide deformylase, putative [Plasmodium yoelii yoelii]
Length = 236
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 71/111 (63%), Gaps = 7/111 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE-RGEGEEIVLVNPRVNKYS---NKMIPY 56
MF MY+ GIGLSAPQV I+ +++V+N + E R E E V +NP + + S NK+I
Sbjct: 91 MFKAMYENKGIGLSAPQVNISKRIIVWNALYEKRDEKNERVFINPLIVQESAVKNKLI-- 148
Query: 57 EEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
EGCLSFP I A VERP V I DING + L + ARVFQHE+DHL
Sbjct: 149 -EGCLSFPNIEAKVERPAIVSISYYDINGNKHLKILKGIHARVFQHEYDHL 198
>gi|330837393|ref|YP_004412034.1| peptide deformylase [Sphaerochaeta coccoides DSM 17374]
gi|329749296|gb|AEC02652.1| peptide deformylase [Sphaerochaeta coccoides DSM 17374]
Length = 167
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 70/107 (65%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD + + G+GL+APQVG++ +L + + G GE+ V +NP + + S + PYEEGC
Sbjct: 33 MFDSLAQERGVGLAAPQVGVSQRLFIVDIEG----GEKGVFINPEIIETSMEQTPYEEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PGI DV RP+ + + A+D+ G F+V + ARV QHE+DHL
Sbjct: 89 LSIPGIWHDVVRPQRITMQAQDVTGKFFTVKADGMFARVLQHEYDHL 135
>gi|354565615|ref|ZP_08984789.1| Peptide deformylase [Fischerella sp. JSC-11]
gi|353548488|gb|EHC17933.1| Peptide deformylase [Fischerella sp. JSC-11]
Length = 187
Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 69/113 (61%), Gaps = 2/113 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGIN Q++V + + +VL+NP + + S M +EGC
Sbjct: 48 MLQTMYSQDGIGLAAPQVGINKQVIVIDLEPDNPANSPLVLINPTIKQVSRDMCVAQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PG++ DV+RPE V+I +D G ++ SDL R QHE DHL VFV
Sbjct: 108 LSIPGVYMDVKRPEVVEISYKDEYGRPKTLKASDLLGRCIQHEIDHLNGVVFV 160
>gi|428777407|ref|YP_007169194.1| peptide deformylase [Halothece sp. PCC 7418]
gi|428691686|gb|AFZ44980.1| peptide deformylase [Halothece sp. PCC 7418]
Length = 188
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 66/107 (61%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG+N Q++V + ++L+NP + YS ++ EEGC
Sbjct: 48 MIQTMYAEDGIGLAAPQVGVNKQMLVIDCDPNNTATPPLILINPEIKSYSQELATGEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG+ DV RPE+V++ +D +G + S L ARV QHE DHL
Sbjct: 108 LSIPGVFLDVVRPEAVEVKYKDESGRPQKMQASGLLARVIQHELDHL 154
>gi|218439032|ref|YP_002377361.1| peptide deformylase [Cyanothece sp. PCC 7424]
gi|218171760|gb|ACK70493.1| peptide deformylase [Cyanothece sp. PCC 7424]
Length = 187
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 70/107 (65%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY ++GIGL+APQV +N QL+V + + ++L+NP++ + S ++ +EEGC
Sbjct: 48 MLQTMYSSNGIGLAAPQVAVNKQLLVIDCEPDNPANPPLILINPQITQSSQELCQFEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV RP+ +++ +D +G + +DL ARV QHE DHL
Sbjct: 108 LSIPGVYLDVVRPKVIEVSYKDESGRPKKLKATDLLARVIQHEMDHL 154
>gi|428780979|ref|YP_007172765.1| peptide deformylase [Dactylococcopsis salina PCC 8305]
gi|428695258|gb|AFZ51408.1| peptide deformylase [Dactylococcopsis salina PCC 8305]
Length = 189
Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 66/107 (61%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVG+N Q++V + +VL+NP + YS ++ EEGC
Sbjct: 49 MVQTMYAEQGIGLAAPQVGVNKQMLVIDCDPNNTATPPLVLINPEIQTYSPELATGEEGC 108
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV RPE+V++ RD +G + S L ARV QHE DHL
Sbjct: 109 LSIPGVYLDVVRPEAVQVKFRDESGRPQKMKASGLLARVIQHELDHL 155
>gi|3023625|sp|P94601.1|DEF_FREDI RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|1772503|emb|CAA71353.1| polypeptide deformylase [Tolypothrix sp. PCC 7601]
Length = 187
Score = 100 bits (250), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 71/113 (62%), Gaps = 2/113 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGI+ QL+V + + +VL+NP + + S ++ +EGC
Sbjct: 48 MLQTMYSKDGIGLAAPQVGIHKQLIVIDLEPDNPANPPLVLINPTIKQVSKEICVAQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS P ++ DV+RPE V+I +D NG ++ +DL AR QHE DHL VFV
Sbjct: 108 LSIPNVYMDVKRPEVVEIAYKDENGRPKTLKATDLLARCIQHEMDHLNGVVFV 160
>gi|307719714|ref|YP_003875246.1| peptide deformylase [Spirochaeta thermophila DSM 6192]
gi|306533439|gb|ADN02973.1| peptide deformylase [Spirochaeta thermophila DSM 6192]
Length = 163
Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 71/107 (66%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD+M++ +GIGL+APQVGI+ + + + EGE +V +NP + S ++ +EEGC
Sbjct: 32 MFDLMHEANGIGLAAPQVGISQRFFICHV----PEGEPLVFINPEITATSPELTTFEEGC 87
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P I+ADV RP +V++ A ++ G F + + ARV QHEFDHL
Sbjct: 88 LSIPQIYADVVRPAAVEVSAWNLQGKPFRMEADGMLARVIQHEFDHL 134
>gi|119510121|ref|ZP_01629260.1| peptide deformylase [Nodularia spumigena CCY9414]
gi|119465182|gb|EAW46080.1| peptide deformylase [Nodularia spumigena CCY9414]
Length = 187
Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 74/113 (65%), Gaps = 2/113 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +DGIGL+APQVGI+ QL+V + + + +VL+NP + + S ++ +EGC
Sbjct: 48 MLQTMYSSDGIGLAAPQVGIHKQLIVIDCEPDNPDHPPLVLINPTIKQMSKEVCVAQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS P ++ DV+RPE+V+I +D G ++ +DL AR QHE DHL+ VFV
Sbjct: 108 LSIPKVYLDVKRPEAVEIAYKDEYGRPKTLKATDLLARCIQHEMDHLKGVVFV 160
>gi|427722272|ref|YP_007069549.1| peptide deformylase [Leptolyngbya sp. PCC 7376]
gi|427353992|gb|AFY36715.1| peptide deformylase [Leptolyngbya sp. PCC 7376]
Length = 186
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 67/107 (62%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY + GIGL+APQVGIN +L+V + E E E VL+NP + K+ M +EEGC
Sbjct: 48 MLQTMYSSYGIGLAAPQVGINKRLIVVDTDPENPENEAYVLINPEIKKFGKDMCGFEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ +V RP+ +++ RD G + S L +RV QHE DHL
Sbjct: 108 LSIPGVNFEVLRPDEIEVSYRDELGKPKRIKASGLLSRVIQHEIDHL 154
>gi|221481821|gb|EEE20191.1| peptide deformylase, putative [Toxoplasma gondii GT1]
Length = 353
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 49/109 (44%), Positives = 69/109 (63%), Gaps = 1/109 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE-RGEGEEIVLVNPRVNKYSNKMIPYEEG 59
+ VMY+ G+GL+APQVG++VQ++V+NP G+ R E V +NPR+ ++ EG
Sbjct: 217 LLAVMYRDGGVGLAAPQVGVSVQMIVWNPTGDVRESSRERVFLNPRLLSLYGPLVSDVEG 276
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
CLS PG+ A VERP ++ + G + V+LS L ARV QHE DHL
Sbjct: 277 CLSVPGVFAPVERPLHARVRYTSLEGIQREVTLSGLEARVVQHEIDHLH 325
>gi|406934444|gb|EKD68740.1| Peptide deformylase [uncultured bacterium]
Length = 170
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 70/107 (65%), Gaps = 5/107 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MYK GIGL+APQ+GI+++L+V++ G G +VL+NP + +S + YEEGC
Sbjct: 35 MIQTMYKAPGIGLAAPQIGISLRLVVYDA----GNGS-VVLINPEIIFWSEQTAAYEEGC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P I A++ RP ++K A ++G +F +S L ARV QHE DHL
Sbjct: 90 LSVPDITAEIIRPATIKFRAYGLDGYKFEKEVSGLEARVIQHECDHL 136
>gi|168704063|ref|ZP_02736340.1| peptide deformylase [Gemmata obscuriglobus UQM 2246]
Length = 184
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGE-GEEIVLVNPRVNKYSNKMIPYEEG 59
M ++MY+++G+GL+APQV ++ Q++V NP+GE + +E+V +NP + + I EG
Sbjct: 32 MVELMYRSEGLGLAAPQVTLDYQMIVLNPLGEADQPDQEVVAINPVIVEAKGSTINDREG 91
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
CLSFPG++ +V R ++V + ++ G + DL ARV+QHE DHLQ
Sbjct: 92 CLSFPGLYQNVRRYKTVTVKFYNLKGELVQTTAHDLAARVWQHEIDHLQ 140
>gi|172039521|ref|YP_001806022.1| peptide deformylase [Cyanothece sp. ATCC 51142]
gi|354552216|ref|ZP_08971524.1| peptide deformylase [Cyanothece sp. ATCC 51472]
gi|171700975|gb|ACB53956.1| formylmethionine deformylase [Cyanothece sp. ATCC 51142]
gi|353555538|gb|EHC24926.1| peptide deformylase [Cyanothece sp. ATCC 51472]
Length = 187
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 68/107 (63%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY + GIGL+APQV I+ QL+V + + ++L+NP++ + S ++ EEGC
Sbjct: 48 MLQTMYSSHGIGLAAPQVAIHKQLIVIDCEPDNPANPPLILINPKITRVSQELCVVEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV RP+++++ +D G + +DL ARV QHE DHL
Sbjct: 108 LSIPGVYLDVTRPKTIEVSFKDEQGKPRKIQATDLLARVIQHEMDHL 154
>gi|406707254|ref|YP_006757606.1| peptide deformylase [alpha proteobacterium HIMB59]
gi|406653030|gb|AFS48429.1| peptide deformylase [alpha proteobacterium HIMB59]
Length = 170
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 71/107 (66%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M++VMY+ +G+GL+APQVG+++++ + + E I ++NP++ + ++PYEEGC
Sbjct: 33 MYEVMYEANGVGLAAPQVGLDMRIFIVDAAAREEEKTPITMINPKLISIEDDVVPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFP A+++RP+ +KI+ D N + +S +R+ QHE DHL
Sbjct: 93 LSFPEHFAEIDRPDKLKIEYIDENNQKKILSTDGFTSRIIQHELDHL 139
>gi|443318180|ref|ZP_21047450.1| peptide deformylase [Leptolyngbya sp. PCC 6406]
gi|442782222|gb|ELR92292.1| peptide deformylase [Leptolyngbya sp. PCC 6406]
Length = 188
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 68/107 (63%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +DGIGL+APQVG+N Q++V + + ++L+NP+V + S K+ EEGC
Sbjct: 48 MLQTMYSSDGIGLAAPQVGVNKQVIVIDLEPDNPAALPLILINPKVLRTSQKLCTGEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV RP ++++ +D NG ++ DL AR HE DHL
Sbjct: 108 LSIPGVYLDVVRPVAIEVSYKDENGRPQKLAADDLLARCILHEMDHL 154
>gi|42543585|pdb|1RQC|A Chain A, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
gi|42543586|pdb|1RQC|B Chain B, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
gi|42543587|pdb|1RQC|C Chain C, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
gi|42543588|pdb|1RQC|D Chain D, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
gi|42543589|pdb|1RQC|E Chain E, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
gi|42543590|pdb|1RQC|F Chain F, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
gi|42543591|pdb|1RQC|G Chain G, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
gi|42543592|pdb|1RQC|H Chain H, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
gi|42543593|pdb|1RQC|I Chain I, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
gi|42543594|pdb|1RQC|J Chain J, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
Length = 185
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 2 FDVMYKTDGIGLSAPQVGINVQLMVFNPVGE-RGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
FD+ Y++ GIGLSAPQV I+ +++V+N + E R E E + +NP + + S + EGC
Sbjct: 35 FDIXYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPSIVEQSLVKLKLIEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFPGI VERP V I DING + L + +R+FQHEFDHL
Sbjct: 95 LSFPGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHL 141
>gi|158337779|ref|YP_001518955.1| peptide deformylase [Acaryochloris marina MBIC11017]
gi|359458949|ref|ZP_09247512.1| peptide deformylase [Acaryochloris sp. CCMEE 5410]
gi|158308020|gb|ABW29637.1| peptide deformylase [Acaryochloris marina MBIC11017]
Length = 189
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 67/107 (62%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQV + QL+V + E + I+L+NP++ ++S+ + +EGC
Sbjct: 48 MLQTMYSADGIGLAAPQVAVGKQLIVVDTDPEEPANQPIILLNPKIRRHSDDLALGQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV RP +++ +D G + +DL ARV QHE DHL
Sbjct: 108 LSIPGVYLDVRRPAQIEVAYKDEQGRPQVIVATDLLARVIQHEMDHL 154
>gi|257457589|ref|ZP_05622756.1| peptide deformylase [Treponema vincentii ATCC 35580]
gi|257444975|gb|EEV20051.1| peptide deformylase [Treponema vincentii ATCC 35580]
Length = 173
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 69/108 (63%), Gaps = 4/108 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF M + +GIGL+APQ+G NV+L + +G E V +NP + S K YEEGC
Sbjct: 32 MFITMDEDNGIGLAAPQIGKNVRLFIVKI----DDGIERVFINPLIVGTSEKQCSYEEGC 87
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS P + ADV RPE+V + +D+NG R ++ + L ARV QHE+DHL+
Sbjct: 88 LSIPKMFADVVRPEAVTVQYQDMNGRRRTIEATGLLARVIQHEYDHLE 135
>gi|283778512|ref|YP_003369267.1| peptide deformylase [Pirellula staleyi DSM 6068]
gi|283436965|gb|ADB15407.1| peptide deformylase [Pirellula staleyi DSM 6068]
Length = 222
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD+MY+ GIGL+A QV + ++L V N E+G+GEE+V +NP V + EEGC
Sbjct: 62 MFDLMYEAKGIGLAANQVDLPLRLFVINLTAEKGKGEELVFINP-VLSHPKGSAEAEEGC 120
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ V RP++V+++A ++ G S + L AR QHE DHL
Sbjct: 121 LSLPGVYGQVVRPKTVQVNAYNLQGQEISAEVGGLLARCIQHENDHL 167
>gi|428309242|ref|YP_007120219.1| peptide deformylase [Microcoleus sp. PCC 7113]
gi|428250854|gb|AFZ16813.1| peptide deformylase [Microcoleus sp. PCC 7113]
Length = 187
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGI+ Q++V + + + + +VL+NP + ++ +K+ +EGC
Sbjct: 48 MLQTMYSADGIGLAAPQVGIHKQIIVIDCEPDNPDNKPLVLINPTIKRFGSKLCDAQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P ++ DV RPE V++ +D NG ++ L AR QHE DHL
Sbjct: 108 LSIPNVYLDVMRPEEVEVAYKDENGRPQTLKADGLLARAIQHEMDHL 154
>gi|443320089|ref|ZP_21049215.1| peptide deformylase [Gloeocapsa sp. PCC 73106]
gi|442790199|gb|ELR99806.1| peptide deformylase [Gloeocapsa sp. PCC 73106]
Length = 188
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 69/108 (63%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +GIGL+APQV IN Q++V + + ++L+NP++ +YS + +EEGC
Sbjct: 48 MLQTMYTANGIGLAAPQVNINKQIIVIDCEPDNPANPPLILINPQITRYSREKCGFEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG++ +V RPE++++ +D NG + S L +R QHE DHL+
Sbjct: 108 LSIPGVYLEVIRPEAIEVSYKDENGRPQKIPASGLLSRAIQHEMDHLR 155
>gi|302779750|ref|XP_002971650.1| hypothetical protein SELMODRAFT_96122 [Selaginella moellendorffii]
gi|300160782|gb|EFJ27399.1| hypothetical protein SELMODRAFT_96122 [Selaginella moellendorffii]
Length = 166
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 69/111 (62%), Gaps = 10/111 (9%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M DV Y+ DG+GLSAPQVG+N +LMVFNP GERG+G+E V VNP + K+ + E
Sbjct: 34 MLDVTYRRDGVGLSAPQVGVNARLMVFNPEGERGKGKEYVFVNPMIVKFGKE----REAR 89
Query: 61 LSFPG---IHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
SF + D R E + A+DING +F + A +F+HE+DHL+
Sbjct: 90 FSFIACVFVSRDRYRSE---LKAQDINGKKFGTAFRGWTAGIFRHEYDHLE 137
>gi|255261213|ref|ZP_05340555.1| peptide deformylase [Thalassiobium sp. R2A62]
gi|255103548|gb|EET46222.1| peptide deformylase [Thalassiobium sp. R2A62]
Length = 173
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
M D MY GIGL+APQ+G+ ++ V + V E GE + +VLVNP + S++M Y+EG
Sbjct: 35 MLDTMYDAPGIGLAAPQIGVMSRVFVMDCVKEEGEEPKPMVLVNPEITWTSDEMNTYDEG 94
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P +A+V+RP VK+ +D+ G ++ L A QHE DHL
Sbjct: 95 CLSIPEQYAEVDRPAEVKVTWQDVEGTQYEAQFDGLWATCVQHEIDHL 142
>gi|237843361|ref|XP_002370978.1| peptide deformylase, putative [Toxoplasma gondii ME49]
gi|211968642|gb|EEB03838.1| peptide deformylase, putative [Toxoplasma gondii ME49]
gi|221502320|gb|EEE28053.1| peptide deformylase, putative [Toxoplasma gondii VEG]
gi|289064341|gb|ADC80546.1| peptide deformylase [Toxoplasma gondii]
Length = 353
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 48/109 (44%), Positives = 68/109 (62%), Gaps = 1/109 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE-RGEGEEIVLVNPRVNKYSNKMIPYEEG 59
+ VMY+ G+GL+APQVG++VQ++V+NP G+ R E V +NPR+ ++ EG
Sbjct: 217 LLAVMYRDGGVGLAAPQVGVSVQMIVWNPTGDVRESSRERVFLNPRLLSLYGPLVSDVEG 276
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
CLS PG+ A VERP ++ + G + +LS L ARV QHE DHL
Sbjct: 277 CLSVPGVFAPVERPLHARVRYTSLEGIQREATLSGLEARVVQHEIDHLH 325
>gi|67923097|ref|ZP_00516588.1| Formylmethionine deformylase [Crocosphaera watsonii WH 8501]
gi|67855050|gb|EAM50318.1| Formylmethionine deformylase [Crocosphaera watsonii WH 8501]
Length = 188
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 67/107 (62%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY + GIGL+APQV I QL+V + + ++L+NP++ +S ++ EEGC
Sbjct: 48 MLQTMYSSQGIGLAAPQVAIQKQLIVVDCEPDNPANSPLILINPKITVFSKELCVVEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV RP+++++ +D G + ++L ARV QHE DHL
Sbjct: 108 LSIPGVYLDVTRPKAIEVSFKDEQGKPRKIQATELLARVIQHEMDHL 154
>gi|416394208|ref|ZP_11686121.1| Peptide deformylase [Crocosphaera watsonii WH 0003]
gi|357263333|gb|EHJ12355.1| Peptide deformylase [Crocosphaera watsonii WH 0003]
Length = 188
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 67/107 (62%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY + GIGL+APQV I QL+V + + ++L+NP++ +S ++ EEGC
Sbjct: 48 MLQTMYSSQGIGLAAPQVAIQKQLIVVDCEPDNPANSPLILINPKITGFSKELCVVEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV RP+++++ +D G + ++L ARV QHE DHL
Sbjct: 108 LSIPGVYLDVTRPKAIEVSFKDEQGKPRKIQATELLARVIQHEMDHL 154
>gi|78778455|ref|YP_396567.1| peptide deformylase [Prochlorococcus marinus str. MIT 9312]
gi|123727935|sp|Q31DB4.1|DEF_PROM9 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|78711954|gb|ABB49131.1| peptide deformylase [Prochlorococcus marinus str. MIT 9312]
Length = 201
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 63/107 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQ+GIN +L+V + E E ++L+NP + Y + YEEGC
Sbjct: 62 MIQSMYAAKGIGLAAPQIGINKELLVIDVNFEDSAAEPLILINPEITDYGTTLNSYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ +V RP ++K+ RD G + L AR QHE DHL
Sbjct: 122 LSIPGVYLNVVRPSTIKLKFRDEMGRPRKMKADGLLARCIQHEMDHL 168
>gi|302338169|ref|YP_003803375.1| peptide deformylase [Spirochaeta smaragdinae DSM 11293]
gi|301635354|gb|ADK80781.1| peptide deformylase [Spirochaeta smaragdinae DSM 11293]
Length = 161
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 69/108 (63%), Gaps = 4/108 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M M++ DG+GL+APQ+G+ +L V + G+ V +NP + S + + YEEGC
Sbjct: 32 MIVTMHEDDGVGLAAPQIGVLKRLFVCHVRGDVPR----VFINPEIIGTSQEQVRYEEGC 87
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PGI+ADV RPES+++ A D NG F ++ L ARV QHE DHL+
Sbjct: 88 LSIPGIYADVLRPESIQVQAIDENGKAFKLAAEGLLARVIQHEMDHLK 135
>gi|254526876|ref|ZP_05138928.1| peptide deformylase [Prochlorococcus marinus str. MIT 9202]
gi|221538300|gb|EEE40753.1| peptide deformylase [Prochlorococcus marinus str. MIT 9202]
Length = 201
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 66/108 (61%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVGI+ +L+V + E E ++L+NP + Y + + YEEGC
Sbjct: 62 MLQSMYSAKGIGLAAPQVGISKELLVIDINFEDSAAEPLILINPEITAYGSTLNSYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG++ +V RP ++K+ RD G ++ L AR QHE DHL+
Sbjct: 122 LSIPGVYLNVIRPSTIKLKFRDEMGRPRKMNADGLLARCIQHEVDHLK 169
>gi|16330073|ref|NP_440801.1| peptide deformylase [Synechocystis sp. PCC 6803]
gi|383321816|ref|YP_005382669.1| polypeptide deformylase [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383324985|ref|YP_005385838.1| polypeptide deformylase [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383490869|ref|YP_005408545.1| polypeptide deformylase [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384436136|ref|YP_005650860.1| polypeptide deformylase [Synechocystis sp. PCC 6803]
gi|451814232|ref|YP_007450684.1| polypeptide deformylase [Synechocystis sp. PCC 6803]
gi|2499924|sp|P73441.1|DEF_SYNY3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|1652560|dbj|BAA17481.1| polypeptide deformylase [Synechocystis sp. PCC 6803]
gi|339273168|dbj|BAK49655.1| polypeptide deformylase [Synechocystis sp. PCC 6803]
gi|359271135|dbj|BAL28654.1| polypeptide deformylase [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359274305|dbj|BAL31823.1| polypeptide deformylase [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359277475|dbj|BAL34992.1| polypeptide deformylase [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|407957971|dbj|BAM51211.1| peptide deformylase [Synechocystis sp. PCC 6803]
gi|451780201|gb|AGF51170.1| polypeptide deformylase [Synechocystis sp. PCC 6803]
Length = 187
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 69/107 (64%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +GIGL+APQVGIN QL+V + ++ + ++++NP++ + S ++ EEGC
Sbjct: 48 MLQTMYSANGIGLAAPQVGINKQLLVVDCEQDKPDEPPLIMINPQITRTSEELCVVEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P ++ DV RP ++++ +D +G ++L ARV QHE DHL
Sbjct: 108 LSVPNVYMDVTRPRAIEVTYKDEHGRPQKRLFAELTARVIQHEMDHL 154
>gi|332709623|ref|ZP_08429583.1| peptide deformylase [Moorea producens 3L]
gi|332351656|gb|EGJ31236.1| peptide deformylase [Moorea producens 3L]
Length = 187
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 68/108 (62%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGIN Q++V + + + +VL+NP + + + +EGC
Sbjct: 48 MLQTMYSADGIGLAAPQVGINKQMIVVDCEPNNQDNQPLVLINPEIKSFGSTPCDGQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG++ DV RP+ +++ +D NG ++ + L +RV QHE DHL+
Sbjct: 108 LSIPGVYLDVTRPDEIEVAYKDQNGRPRTLKANGLLSRVIQHEIDHLK 155
>gi|157412419|ref|YP_001483285.1| peptide deformylase [Prochlorococcus marinus str. MIT 9215]
gi|157386994|gb|ABV49699.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
MIT 9215]
Length = 201
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 66/108 (61%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVGI+ +L+V + E E ++L+NP + Y + + YEEGC
Sbjct: 62 MLQSMYSAKGIGLAAPQVGISKELLVIDINFEDSAAEPLILINPEITAYGSTLNSYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG++ +V RP ++K+ RD G ++ L AR QHE DHL+
Sbjct: 122 LSIPGVYLNVIRPSTIKLKFRDEMGRPRKMNADGLLARCIQHEVDHLK 169
>gi|340757101|ref|ZP_08693704.1| polypeptide deformylase [Fusobacterium varium ATCC 27725]
gi|251834368|gb|EES62931.1| polypeptide deformylase [Fusobacterium varium ATCC 27725]
Length = 173
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 70/112 (62%), Gaps = 4/112 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI-VLVNPRVNKYSNKMIPYEEG 59
M + MY G+GL+APQVGI+ +++V + GE GEE+ ++NP + + + I +EEG
Sbjct: 34 MVETMYDKKGVGLAAPQVGISKRMLVLDWTGE---GEELRKVINPVITPLTEEKIDWEEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQVFV 111
CLS PGI+ VER +K+D + G + + L PA V QHEFDHL+ +
Sbjct: 91 CLSIPGIYKKVERVAKIKVDYLNEKGEKITEELEGFPAIVMQHEFDHLEAVL 142
>gi|428209402|ref|YP_007093755.1| peptide deformylase [Chroococcidiopsis thermalis PCC 7203]
gi|428011323|gb|AFY89886.1| peptide deformylase [Chroococcidiopsis thermalis PCC 7203]
Length = 187
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 70/113 (61%), Gaps = 2/113 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQV ++ Q++V + + ++L+NP + + S+ + EEGC
Sbjct: 48 MLQSMYSADGIGLAAPQVAVSKQIIVIDCEPDNAANPPLILINPTIKRTSSDICVAEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PGI+ +V RP++V+I +D G S+ +DL AR QHE DHL VFV
Sbjct: 108 LSIPGIYLNVTRPQAVEIAYKDEYGHPRSLQATDLLARCIQHEIDHLNGIVFV 160
>gi|358013003|ref|ZP_09144813.1| peptide deformylase [Acinetobacter sp. P8-3-8]
Length = 176
Score = 97.4 bits (241), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 67/107 (62%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++QL+V + R + +V +NP+V + + +PYEEGC
Sbjct: 35 MFETMYEAPGIGLAATQVDQHIQLIVIDVSENRDQP--MVFINPKVTPLTEQTLPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P I+ VERP VKI+A D+ G F + +L A QHE DHL
Sbjct: 93 LSVPQIYDKVERPSRVKIEAIDLEGNAFELEADELLAVCIQHEMDHL 139
>gi|298491536|ref|YP_003721713.1| peptide deformylase ['Nostoc azollae' 0708]
gi|298233454|gb|ADI64590.1| peptide deformylase ['Nostoc azollae' 0708]
Length = 187
Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 67/107 (62%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGIN QL+V + ++ E +VL+NP + + S+++ EEGC
Sbjct: 48 MLQTMYSEDGIGLAAPQVGINKQLIVIDCEPDKPEAPALVLINPVIKQVSSELCVAEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P ++ DV+RP+ V+I +D G ++ DL R HE DHL
Sbjct: 108 LSIPKVYLDVKRPQVVEIAYKDEYGRPKTLKAGDLLGRCILHEMDHL 154
>gi|325972108|ref|YP_004248299.1| peptide deformylase [Sphaerochaeta globus str. Buddy]
gi|324027346|gb|ADY14105.1| Peptide deformylase [Sphaerochaeta globus str. Buddy]
Length = 167
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 66/107 (61%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ M + DG+GL+APQVG+N +L V + G E +NP++ + S + EEGC
Sbjct: 33 MFETMAEADGVGLAAPQVGVNSRLFVIHIQG----SENRAYINPQIIETSIETDTSEEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG+ DV+RP V + A+D+ G F+V L AR QHE+DHL
Sbjct: 89 LSIPGVWHDVQRPARVTVQAQDVEGKVFTVKAEGLLARAIQHEYDHL 135
>gi|289523051|ref|ZP_06439905.1| peptide deformylase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
gi|289503594|gb|EFD24758.1| peptide deformylase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
Length = 165
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 69/108 (63%), Gaps = 6/108 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M++ MY DG+GL+APQVGIN+ + V + EG++ LVNP + + + EGC
Sbjct: 35 MYETMYANDGLGLAAPQVGINLMVAVVDY-----EGKKYTLVNPAILEKRGEQTG-REGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LSFP + D+ERPE VKI+A D NG ++++ S L AR F HE DHL
Sbjct: 89 LSFPEVFEDIERPEIVKIEAFDENGEKYAIEASGLLARAFCHEIDHLH 136
>gi|434405601|ref|YP_007148486.1| peptide deformylase [Cylindrospermum stagnale PCC 7417]
gi|428259856|gb|AFZ25806.1| peptide deformylase [Cylindrospermum stagnale PCC 7417]
Length = 187
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 69/113 (61%), Gaps = 2/113 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGI+ Q++V + + +VL+NP V + S + +EGC
Sbjct: 48 MLQTMYSQDGIGLAAPQVGIHKQIIVIDCEPDNAANPPLVLINPTVKQVSRDICVAQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PG++ DV+RP+ V+I +D +G + SDL R QHE DHL VFV
Sbjct: 108 LSIPGVYLDVKRPQVVEIAYKDESGRPQILKASDLLGRCIQHEMDHLNGVVFV 160
>gi|186684172|ref|YP_001867368.1| peptide deformylase [Nostoc punctiforme PCC 73102]
gi|186466624|gb|ACC82425.1| peptide deformylase [Nostoc punctiforme PCC 73102]
Length = 187
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 68/113 (60%), Gaps = 2/113 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGI+ QL+V + E +VL+NP + + S + EEGC
Sbjct: 48 MLQTMYSKDGIGLAAPQVGIHKQLIVIDLEPENAANPPLVLINPTIKQVSRDISVAEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS P ++ DV+RPE V+I +D G ++ +DL R QHE DHL VFV
Sbjct: 108 LSIPNVYLDVKRPEVVEIAYKDEYGRPRTLKANDLLGRCIQHEMDHLNGVVFV 160
>gi|425459316|ref|ZP_18838802.1| Peptide deformylase [Microcystis aeruginosa PCC 9808]
gi|389822994|emb|CCI29164.1| Peptide deformylase [Microcystis aeruginosa PCC 9808]
Length = 191
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 68/107 (63%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY ++GIGL+APQV +N QL+V + ++ E ++L+NP++ YS ++ EEGC
Sbjct: 48 MLQTMYSSNGIGLAAPQVAVNKQLIVIDCEPDKPENTPLILINPQIIGYSRELCKAEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + DV RP+++++ +D G + + L ARV QHE DHL
Sbjct: 108 LSIPDVFLDVIRPQAIEVSYKDEQGKPRKLQANGLLARVIQHEMDHL 154
>gi|428219333|ref|YP_007103798.1| peptide deformylase [Pseudanabaena sp. PCC 7367]
gi|427991115|gb|AFY71370.1| peptide deformylase [Pseudanabaena sp. PCC 7367]
Length = 188
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 67/107 (62%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGIN Q++V + ++ + E +VL+NP + + N++ +EGC
Sbjct: 49 MLQTMYSEDGIGLAAPQVGINKQIIVVDCEPDKEDAEPLVLINPEIKAFGNQIELGQEGC 108
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + DV+RP S+ + +D G + + L ARV QHE DHL
Sbjct: 109 LSVPQVFMDVKRPASITVAFKDPEGKPQRLEVDGLLARVIQHEIDHL 155
>gi|33239533|ref|NP_874475.1| peptide deformylase [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
gi|39930846|sp|Q7VED2.1|DEF_PROMA RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|33237058|gb|AAP99127.1| N-formylmethionyl-tRNA deformylase [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 203
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 64/107 (59%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQ+G QL+V + E I+L+NP + ++S + YEEGC
Sbjct: 62 MLHSMYAAKGIGLAAPQIGSQQQLLVIDLDIENSATPPIILINPEITEFSATIDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV RP S+K++ RD G ++ L AR QHE DHL
Sbjct: 122 LSIPGVYLDVIRPSSIKVNFRDEMGRPKKINADGLLARCIQHEMDHL 168
>gi|300868003|ref|ZP_07112642.1| peptide deformylase [Oscillatoria sp. PCC 6506]
gi|300334024|emb|CBN57820.1| peptide deformylase [Oscillatoria sp. PCC 6506]
Length = 186
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 69/107 (64%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +GIGL+APQV + Q++V + + +VL+NP + KYS ++ ++EGC
Sbjct: 48 MLQTMYSAEGIGLAAPQVAVQKQVIVVDCEPDNAANPPLVLINPSIKKYSGEVCVFQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ +V+RPE++++ RD G ++ ++L +R QHE DHL
Sbjct: 108 LSIPGVYLEVKRPEAIEVFYRDEYGRPQTLKATELLSRAIQHEMDHL 154
>gi|123967617|ref|YP_001008475.1| peptide deformylase [Prochlorococcus marinus str. AS9601]
gi|158513947|sp|A2BNK7.1|DEF_PROMS RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|123197727|gb|ABM69368.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
AS9601]
Length = 201
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 63/107 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQ+GIN +L+V + E E ++L+NP + + + YEEGC
Sbjct: 62 MLQSMYAAKGIGLAAPQIGINKELLVIDVNFEDSAAEPLILINPEITDFGTTLNSYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ +V RP ++K+ RD G + L AR QHE DHL
Sbjct: 122 LSIPGVYLNVVRPSTIKLKFRDEMGRPRKMKADGLLARCIQHEMDHL 168
>gi|425449070|ref|ZP_18828913.1| Peptide deformylase [Microcystis aeruginosa PCC 7941]
gi|440752961|ref|ZP_20932164.1| peptide deformylase [Microcystis aeruginosa TAIHU98]
gi|389764905|emb|CCI09070.1| Peptide deformylase [Microcystis aeruginosa PCC 7941]
gi|440177454|gb|ELP56727.1| peptide deformylase [Microcystis aeruginosa TAIHU98]
Length = 191
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 68/107 (63%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY ++GIGL+APQV +N QL+V + ++ E ++L+NP++ YS ++ EEGC
Sbjct: 48 MLQTMYSSNGIGLAAPQVAVNKQLIVIDCEHDKPENPPLILINPQIIGYSRELCKAEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + DV RP+++++ +D G + + L ARV QHE DHL
Sbjct: 108 LSIPDVFLDVIRPQAIEVSYKDEQGKPRKLQANGLLARVIQHEMDHL 154
>gi|425436140|ref|ZP_18816579.1| Peptide deformylase [Microcystis aeruginosa PCC 9432]
gi|389679198|emb|CCH92002.1| Peptide deformylase [Microcystis aeruginosa PCC 9432]
Length = 191
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 67/107 (62%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +GIGL+APQV +N QL+V + ++ E ++L+NP++ YS ++ EEGC
Sbjct: 48 MLQTMYSANGIGLAAPQVAVNKQLIVIDCEPDKPENTPLILINPQIIGYSRELCKAEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + DV RP+++++ +D G + + L ARV QHE DHL
Sbjct: 108 LSIPDVFLDVIRPQAIEVSYKDEQGKPRKLQANGLLARVIQHEMDHL 154
>gi|390440823|ref|ZP_10229023.1| Peptide deformylase [Microcystis sp. T1-4]
gi|389835869|emb|CCI33149.1| Peptide deformylase [Microcystis sp. T1-4]
Length = 191
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 68/107 (63%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY ++GIGL+APQV +N QL+V + ++ E ++L+NP++ YS ++ EEGC
Sbjct: 48 MLQTMYSSNGIGLAAPQVAVNKQLIVIDCEPDKPENPPLILINPQIIGYSRELCKAEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + DV RP+++++ +D G + + L ARV QHE DHL
Sbjct: 108 LSIPDVFLDVIRPQAIEVSYKDEQGKPRKLQANGLLARVIQHEMDHL 154
>gi|166364192|ref|YP_001656465.1| peptide deformylase [Microcystis aeruginosa NIES-843]
gi|425441814|ref|ZP_18822081.1| Peptide deformylase [Microcystis aeruginosa PCC 9717]
gi|443669310|ref|ZP_21134540.1| peptide deformylase [Microcystis aeruginosa DIANCHI905]
gi|159030946|emb|CAO88636.1| def [Microcystis aeruginosa PCC 7806]
gi|166086565|dbj|BAG01273.1| polypeptide deformylase [Microcystis aeruginosa NIES-843]
gi|389717379|emb|CCH98524.1| Peptide deformylase [Microcystis aeruginosa PCC 9717]
gi|443330403|gb|ELS45121.1| peptide deformylase [Microcystis aeruginosa DIANCHI905]
Length = 191
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 68/107 (63%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY ++GIGL+APQV +N QL+V + ++ E ++L+NP++ YS ++ EEGC
Sbjct: 48 MLQTMYSSNGIGLAAPQVAVNKQLIVIDCEHDKPENPPLILINPQIIGYSRELCKAEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + DV RP+++++ +D G + + L ARV QHE DHL
Sbjct: 108 LSIPDVFLDVIRPQAIEVSYKDEQGKPRKLQANGLLARVIQHEMDHL 154
>gi|126695417|ref|YP_001090303.1| peptide deformylase [Prochlorococcus marinus str. MIT 9301]
gi|126542460|gb|ABO16702.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
MIT 9301]
Length = 201
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 63/107 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQ+GIN +L+V + E E ++L+NP + + + YEEGC
Sbjct: 62 MLQSMYAAKGIGLAAPQIGINKELLVIDVNFEDSAAEPLILINPEITDFGTTLNSYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ +V RP ++K+ RD G + L AR QHE DHL
Sbjct: 122 LSIPGVYLNVVRPSTIKLKFRDEMGRPRKMKADGLLARCIQHEMDHL 168
>gi|392407142|ref|YP_006443750.1| peptide deformylase [Anaerobaculum mobile DSM 13181]
gi|390620278|gb|AFM21425.1| peptide deformylase [Anaerobaculum mobile DSM 13181]
Length = 163
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 70/108 (64%), Gaps = 6/108 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY DG+GL+APQVGIN+ + V + EG + L+NP + + + + EEGC
Sbjct: 32 MFETMYANDGLGLAAPQVGINLMIAVVD-----HEGRKFTLINPVIIEARGEQVG-EEGC 85
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LSFP I +V+RPE+VK++A + G R+++ S + AR F HE DHL
Sbjct: 86 LSFPEIFEEVKRPETVKVEACNEKGERYTIEASGMLARAFCHEIDHLH 133
>gi|159902617|ref|YP_001549961.1| peptide deformylase [Prochlorococcus marinus str. MIT 9211]
gi|159887793|gb|ABX08007.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
MIT 9211]
Length = 201
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 66/107 (61%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVGI+ QL+V + E IVL+NP++ +S + YEEGC
Sbjct: 62 MLHSMYSAKGIGLAAPQVGIHKQLLVIDLDIENSTTPPIVLINPQITDFSAAIETYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ +V RP S+K++ RD G ++ L +R QHE DHL
Sbjct: 122 LSIPGVYLNVIRPSSIKLNFRDEMGRPKKMNADGLLSRCIQHEMDHL 168
>gi|104161993|emb|CAJ75702.1| N-formylmethionyl-tRNA deformylase [uncultured Thermotogales
bacterium]
Length = 166
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 71/105 (67%), Gaps = 5/105 (4%)
Query: 4 VMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSF 63
MY DG+GL+APQV ++ ++ V++P G+G +V +NP + S++++ EEGCLS
Sbjct: 38 TMYVEDGVGLAAPQVAVSRRIFVYDP----GDGLRVV-INPEILSKSDEIVKMEEGCLSI 92
Query: 64 PGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
PGI+AD++RP +V+I +D G L++ PAR+ QHE DHL+
Sbjct: 93 PGIYADIDRPSAVRIHYQDEYGQHHEEDLTEYPARIVQHESDHLE 137
>gi|414077496|ref|YP_006996814.1| peptide deformylase [Anabaena sp. 90]
gi|413970912|gb|AFW95001.1| peptide deformylase [Anabaena sp. 90]
Length = 187
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 69/113 (61%), Gaps = 2/113 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +DGIGL+APQVGIN QL+V + + + +VL+NP + + S+K+ +EGC
Sbjct: 48 MLQTMYSSDGIGLAAPQVGINKQLIVIDCEPDNPDHPPLVLINPTIKQVSSKLSVAQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS P ++ DV+RPE V I +D G ++ DL R HE DHL VFV
Sbjct: 108 LSIPNVYLDVKRPEVVTIAYKDEYGRPQTLKADDLLGRCILHELDHLNGVVFV 160
>gi|425467093|ref|ZP_18846377.1| Peptide deformylase [Microcystis aeruginosa PCC 9809]
gi|389830217|emb|CCI27965.1| Peptide deformylase [Microcystis aeruginosa PCC 9809]
Length = 191
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 67/107 (62%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY ++GIGL+APQV +N QL+V + ++ E ++L+NP++ YS ++ EEGC
Sbjct: 48 MLQTMYSSNGIGLAAPQVAVNKQLIVIDCEHDKPENPPLILINPQIIGYSRELCKAEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + DV RP+++++ +D G + L ARV QHE DHL
Sbjct: 108 LSIPDVFLDVIRPQAIEVSYKDEQGKPRKLQADGLLARVIQHEMDHL 154
>gi|148240477|ref|YP_001225864.1| peptide deformylase [Synechococcus sp. WH 7803]
gi|147849016|emb|CAK24567.1| Peptide deformylase [Synechococcus sp. WH 7803]
Length = 201
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 63/107 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVG++ QL+V + E +VL+NP + S + YEEGC
Sbjct: 62 MLRSMYTARGIGLAAPQVGVHQQLLVIDLDPETASSPPLVLINPEITSASASLETYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV RP +V++ RD G ++ L AR QHE DHL
Sbjct: 122 LSIPGVYLDVVRPSAVQVSFRDEMGRPRTMKADGLMARCIQHEMDHL 168
>gi|422305085|ref|ZP_16392422.1| Peptide deformylase [Microcystis aeruginosa PCC 9806]
gi|389789642|emb|CCI14371.1| Peptide deformylase [Microcystis aeruginosa PCC 9806]
Length = 191
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 67/107 (62%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +GIGL+APQV +N QL+V + ++ E ++L+NP++ YS ++ EEGC
Sbjct: 48 MLQTMYSANGIGLAAPQVAVNKQLIVIDCEPDKPENPPLILINPQIIGYSRELCKAEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + DV RP+++++ +D G + + L ARV QHE DHL
Sbjct: 108 LSIPDVFLDVIRPQAIEVSYKDEQGKPRKLQANGLLARVIQHEMDHL 154
>gi|354594303|ref|ZP_09012342.1| peptide deformylase [Commensalibacter intestini A911]
gi|353671979|gb|EHD13679.1| peptide deformylase [Commensalibacter intestini A911]
Length = 178
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 67/107 (62%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY +GIGL+APQVGI ++ + + + GE E+ +++NP + + S + EGC
Sbjct: 43 MFDTMYDANGIGLAAPQVGIPLRFFIMDLAKKEGEKEQYIILNPEIIEESEECTEDREGC 102
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +++V RPE +K+ D++G + + DL AR QHE DHL
Sbjct: 103 LSVPEQYSEVIRPEKIKVRYMDLDGKQQEMEADDLLARCIQHETDHL 149
>gi|428305963|ref|YP_007142788.1| peptide deformylase [Crinalium epipsammum PCC 9333]
gi|428247498|gb|AFZ13278.1| peptide deformylase [Crinalium epipsammum PCC 9333]
Length = 187
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 65/107 (60%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQV +N QL+V + + +VL+NP + + S ++ +EGC
Sbjct: 48 MLQTMYSADGIGLAAPQVAVNKQLIVIDCEPDNPAAPPLVLINPTIKRASREVCADQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV RPE V++ +D G ++ + L +R QHE DHL
Sbjct: 108 LSIPGVYMDVIRPEMVEVSYKDEQGRPKTIKATGLLSRAIQHEMDHL 154
>gi|33860628|ref|NP_892189.1| peptide deformylase [Prochlorococcus marinus subsp. pastoris str.
CCMP1986]
gi|39930841|sp|Q7V3K7.1|DEF_PROMP RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|33633570|emb|CAE18527.1| putative formylmethionine deformylase [Prochlorococcus marinus
subsp. pastoris str. CCMP1986]
Length = 201
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 62/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQ+GI +L+V + E E ++L+NP + Y + YEEGC
Sbjct: 62 MLQSMYAAKGIGLAAPQIGIKKELLVIDVNFEDAAAEPLILINPEITDYGTTLNSYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ +V RP ++K+ RD G + L AR QHE DHL
Sbjct: 122 LSIPGVYLNVVRPSTIKLRFRDEMGRPRKMKADGLLARCIQHEMDHL 168
>gi|434394090|ref|YP_007129037.1| peptide deformylase [Gloeocapsa sp. PCC 7428]
gi|428265931|gb|AFZ31877.1| peptide deformylase [Gloeocapsa sp. PCC 7428]
Length = 187
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 67/107 (62%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQV + Q++V + + +VLVNP + ++S ++ +EGC
Sbjct: 48 MLQTMYTADGIGLAAPQVAVQKQVIVIDCEPDNPANPPLVLVNPVIKQFSPELCVMQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV RP+ V+I +D NG ++ ++L AR QHE DHL
Sbjct: 108 LSIPGVYLDVVRPQVVEISYKDENGRPRTLKANELLARCIQHEIDHL 154
>gi|46581767|ref|YP_012575.1| polypeptide deformylase [Desulfovibrio vulgaris str. Hildenborough]
gi|120601080|ref|YP_965480.1| peptide deformylase [Desulfovibrio vulgaris DP4]
gi|387151882|ref|YP_005700818.1| peptide deformylase [Desulfovibrio vulgaris RCH1]
gi|46451190|gb|AAS97835.1| polypeptide deformylase [Desulfovibrio vulgaris str. Hildenborough]
gi|120561309|gb|ABM27053.1| peptide deformylase [Desulfovibrio vulgaris DP4]
gi|311232326|gb|ADP85180.1| peptide deformylase [Desulfovibrio vulgaris RCH1]
Length = 171
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 63/107 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ DGIGL+APQVG N +L+V + G + +NPR+ ++ + EEGC
Sbjct: 34 MVETMYREDGIGLAAPQVGANCRLIVVDVSGPEKRESLMTFINPRLEPLGDEKVESEEGC 93
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + A VER E V++ ARD++G + L A QHE DHL
Sbjct: 94 LSVPALRAKVERHERVRLTARDLDGNEVCMDADGLLAICLQHEIDHL 140
>gi|389844380|ref|YP_006346460.1| peptide deformylase [Mesotoga prima MesG1.Ag.4.2]
gi|387859126|gb|AFK07217.1| peptide deformylase [Mesotoga prima MesG1.Ag.4.2]
Length = 163
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 68/104 (65%), Gaps = 5/104 (4%)
Query: 4 VMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSF 63
MY DG+GL+APQV I+ +L V++P G+G +V VNP + S++ + EEGCLS
Sbjct: 35 TMYVEDGVGLAAPQVAISRRLFVYDP----GDGLRVV-VNPEILFRSDEKVKIEEGCLSI 89
Query: 64 PGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
PGI+ADV RP SV+I +D G L+D PAR+ QHE DHL
Sbjct: 90 PGIYADVVRPASVRIRYQDEYGHYHEDDLTDYPARIVQHETDHL 133
>gi|149176747|ref|ZP_01855358.1| peptide deformylase [Planctomyces maris DSM 8797]
gi|148844388|gb|EDL58740.1| peptide deformylase [Planctomyces maris DSM 8797]
Length = 196
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 67/109 (61%), Gaps = 2/109 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGE-GEEIVLVNPRVNKYSNKMIPYEEG 59
MFD+MY+ GIGL+A QV + +L V N + E EE V +NP + K EEG
Sbjct: 35 MFDLMYEARGIGLAANQVALPYRLFVINLTSDPNEPEEEFVFINPEITKRKGTA-EGEEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
CLS P ++ DV+R E + ++A D+NG F ++L DL AR QHE DH++
Sbjct: 94 CLSLPQVYGDVKRSEEITVEAYDLNGQLFEITLDDLAARAVQHEHDHIE 142
>gi|427718637|ref|YP_007066631.1| peptide deformylase [Calothrix sp. PCC 7507]
gi|427351073|gb|AFY33797.1| peptide deformylase [Calothrix sp. PCC 7507]
Length = 187
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 71/113 (62%), Gaps = 2/113 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG++ QL+V + + +VL+NP + + S ++ +EGC
Sbjct: 48 MLQTMYSKDGIGLAAPQVGVHKQLIVIDLEPDNPANPPLVLINPTIKQVSREVCVAQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PG++ DV+RP+ V++ +D +G ++ +DL R QHE DHL VFV
Sbjct: 108 LSIPGVYLDVKRPQVVEVAYKDESGRPRTLQANDLLGRCIQHEMDHLNGVVFV 160
>gi|407784414|ref|ZP_11131563.1| peptide deformylase [Celeribacter baekdonensis B30]
gi|407204116|gb|EKE74097.1| peptide deformylase [Celeribacter baekdonensis B30]
Length = 197
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE-RGEGEEIVLVNPRVNKYSNKMIPYEEG 59
M MY+ GIGL+APQVG+ +++V + V E G E +V+VNP V S++ YEEG
Sbjct: 59 MLQTMYEAPGIGLAAPQVGLTKRMLVMDCVKEASGTPEPMVMVNPAVTWSSDEKNVYEEG 118
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS PG +ADVERP+ V++ D+ G L A QHE DHL
Sbjct: 119 CLSIPGQYADVERPKMVRVSWLDVEGKAHEEEFDALWATCVQHEIDHL 166
>gi|389582919|dbj|GAB65655.1| formylmethionine deformylase [Plasmodium cynomolgi strain B]
Length = 241
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 72/108 (66%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGE-EIVLVNPRVNKYSNKMIPYEEG 59
MF+VMY++ G+GL+APQV I+++++V+N + E+ + E E V +NP + + S EG
Sbjct: 96 MFNVMYESKGMGLAAPQVNISMRIIVWNALYEKKKMENERVFINPSIVEPSLIRSKLVEG 155
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLSFPGI V+RP V I D++G + L + AR+FQHE+DHL
Sbjct: 156 CLSFPGIEGKVDRPSVVSISYYDLDGNKHLKILKGIHARIFQHEYDHL 203
>gi|32477751|ref|NP_870745.1| peptide deformylase [Rhodopirellula baltica SH 1]
gi|417300627|ref|ZP_12087829.1| peptide deformylase [Rhodopirellula baltica WH47]
gi|421615286|ref|ZP_16056316.1| peptide deformylase [Rhodopirellula baltica SH28]
gi|440712473|ref|ZP_20893093.1| peptide deformylase [Rhodopirellula baltica SWK14]
gi|449132747|ref|ZP_21768751.1| peptide deformylase [Rhodopirellula europaea 6C]
gi|39930837|sp|Q7UHZ5.1|DEF_RHOBA RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|32448305|emb|CAD77822.1| peptide deformylase [Rhodopirellula baltica SH 1]
gi|327543078|gb|EGF29520.1| peptide deformylase [Rhodopirellula baltica WH47]
gi|408493937|gb|EKJ98565.1| peptide deformylase [Rhodopirellula baltica SH28]
gi|436442827|gb|ELP35927.1| peptide deformylase [Rhodopirellula baltica SWK14]
gi|448888121|gb|EMB18454.1| peptide deformylase [Rhodopirellula europaea 6C]
Length = 201
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D+MY+ DG+GL+A QV + +++ V NP G+R EGE V++NP +++ +EGC
Sbjct: 34 MLDLMYEFDGVGLAANQVDLPIRMFVANPTGKRDEGESWVILNPEIDRPKGNDTA-QEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ V+RP++V++ D+ G + L ARV QHE DHL
Sbjct: 93 LSVPGLYGQVKRPKTVRLRGFDLQGNEINQVLDGFMARVVQHEVDHL 139
>gi|160901540|ref|YP_001567121.1| peptide deformylase [Petrotoga mobilis SJ95]
gi|160359184|gb|ABX30798.1| peptide deformylase [Petrotoga mobilis SJ95]
Length = 178
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY DG+GL+APQVGI+++ + + E +G+++V +NP + ++ + + +EEGC
Sbjct: 32 MFSTMYLYDGVGLAAPQVGISLRFFIMDSREENEKGKKVV-INPEIIEFLGEEVSFEEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS P I DV RPE V++ +D++G L AR+FQHE DHL+
Sbjct: 91 LSIPDIFEDVVRPEGVRVRYQDLSGNVIEEELHGYQARIFQHETDHLE 138
>gi|86604850|ref|YP_473613.1| peptide deformylase [Synechococcus sp. JA-3-3Ab]
gi|86553392|gb|ABC98350.1| peptide deformylase [Synechococcus sp. JA-3-3Ab]
Length = 198
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 67/107 (62%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGI +L+V + ++ E +VL+NP + +Y +++ +EGC
Sbjct: 48 MLQTMYSADGIGLAAPQVGIPKRLIVVDLYPDKPEVPPLVLINPEIREYLGEVVAGQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG+ +V RP+ V + +D G ++ DL ARV QHE DHL
Sbjct: 108 LSIPGVFCEVMRPQGVVVSFKDETGRPRTLQADDLLARVIQHEIDHL 154
>gi|427706263|ref|YP_007048640.1| peptide deformylase [Nostoc sp. PCC 7107]
gi|427358768|gb|AFY41490.1| peptide deformylase [Nostoc sp. PCC 7107]
Length = 187
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 2/113 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +DGIGL+APQVGI+ QL+V + + + +VL+NP + + S ++ +EGC
Sbjct: 48 MLQTMYSSDGIGLAAPQVGIHKQLIVIDCEPDNPDNPPLVLINPTIKQVSQEICVAQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS P ++ DV+RPE V++ +D G ++ +DL R QHE DHL VFV
Sbjct: 108 LSIPNVYLDVKRPEVVEVAYKDEYGRPQTLKGTDLLGRCIQHEMDHLNGVVFV 160
>gi|254409726|ref|ZP_05023507.1| peptide deformylase [Coleofasciculus chthonoplastes PCC 7420]
gi|196183723|gb|EDX78706.1| peptide deformylase [Coleofasciculus chthonoplastes PCC 7420]
Length = 190
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 65/107 (60%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG+N Q++V + + E ++L+NP + ++ + +EGC
Sbjct: 50 MLQTMYSADGIGLAAPQVGVNKQIIVIDCEPDNPENPPLILINPTIKRFGQSICDAQEGC 109
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV+RP V++ +D NG + L +R QHE DHL
Sbjct: 110 LSVPGVYLDVKRPVEVEVAYKDENGRPQRLKADGLLSRAIQHEMDHL 156
>gi|373497635|ref|ZP_09588157.1| peptide deformylase [Fusobacterium sp. 12_1B]
gi|371962775|gb|EHO80352.1| peptide deformylase [Fusobacterium sp. 12_1B]
Length = 173
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 68/111 (61%), Gaps = 2/111 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+APQVGI+ +++V + GE E ++V NP + + + I +EEGC
Sbjct: 34 MTETMYDKKGVGLAAPQVGISKRMLVLDWSGEGAELRKVV--NPVITPLTEEKIDWEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQVFV 111
LS PGI+ VER +++D + G + + L PA V QHEFDHL+ +
Sbjct: 92 LSIPGIYKKVERVAKIRVDYLNEKGEKITEELEGFPAIVMQHEFDHLEAVL 142
>gi|425469789|ref|ZP_18848696.1| Peptide deformylase [Microcystis aeruginosa PCC 9701]
gi|389880332|emb|CCI38903.1| Peptide deformylase [Microcystis aeruginosa PCC 9701]
Length = 191
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 68/107 (63%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY ++GIGL+APQV +N QL+V + ++ E ++L+NP++ YS ++ EEGC
Sbjct: 48 MLQTMYSSNGIGLAAPQVAVNKQLIVIDCEPDKPENPPLILINPQIIGYSPELCKAEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + DV RP+++++ +D G + + L ARV QHE DHL
Sbjct: 108 LSIPDVFLDVIRPQALEVSYKDEQGKPRKLQANGLLARVIQHEMDHL 154
>gi|87125300|ref|ZP_01081146.1| putative formylmethionine deformylase [Synechococcus sp. RS9917]
gi|86167069|gb|EAQ68330.1| putative formylmethionine deformylase [Synechococcus sp. RS9917]
Length = 201
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 64/108 (59%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVG++ QL+V + E +VL+NP + S + YEEGC
Sbjct: 62 MLRSMYTARGIGLAAPQVGVHKQLLVIDLDIENAAAPPLVLINPEITSASASVDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG++ DV RP ++++ RD G ++ L AR QHE DHL+
Sbjct: 122 LSIPGVYLDVVRPSAIQLSYRDEMGRPRTMKADGLMARCIQHEMDHLK 169
>gi|425446284|ref|ZP_18826292.1| Peptide deformylase [Microcystis aeruginosa PCC 9443]
gi|389733546|emb|CCI02697.1| Peptide deformylase [Microcystis aeruginosa PCC 9443]
Length = 191
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 66/107 (61%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +GIGL+APQV +N QL+V + ++ E ++L+NP++ YS ++ EEGC
Sbjct: 48 MLQTMYSANGIGLAAPQVAVNKQLIVIDCETDKPENPPLILINPQIIGYSRELCKAEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + DV RP+++++ +D G + + L AR QHE DHL
Sbjct: 108 LSIPDVFLDVIRPQAIEVSYKDEQGKPRKLQANGLLARAIQHEMDHL 154
>gi|425457242|ref|ZP_18836948.1| Peptide deformylase [Microcystis aeruginosa PCC 9807]
gi|389801479|emb|CCI19368.1| Peptide deformylase [Microcystis aeruginosa PCC 9807]
Length = 191
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 66/107 (61%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +GIGL+APQV +N QL+V + ++ E ++L+NP++ YS ++ EEGC
Sbjct: 48 MLQTMYSANGIGLAAPQVAVNKQLIVIDCEPDKPENTPLILINPQIIGYSRELCKAEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + DV RP+++++ +D G + + L AR QHE DHL
Sbjct: 108 LSIPDVFLDVIRPQAIEVSYKDEQGKPRKLQANGLLARAIQHEMDHL 154
>gi|357030902|ref|ZP_09092846.1| N-formylmethionylaminoacyl-tRNA deformylase [Gluconobacter morbifer
G707]
gi|356415596|gb|EHH69239.1| N-formylmethionylaminoacyl-tRNA deformylase [Gluconobacter morbifer
G707]
Length = 184
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 65/108 (60%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MYK GIGL+APQVG +++ + + E E IVL+NP + S +M EEGC
Sbjct: 48 MFSAMYKAPGIGLAAPQVGHSLRFALVDVAEEDAPREPIVLINPEIVSDSEQMAVREEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS P +A+V RPES+++ R++ G SDL A QHE DHL+
Sbjct: 108 LSLPNQYAEVVRPESIRVRYRNLAGDIIEKEASDLLATCIQHEMDHLE 155
>gi|308802341|ref|XP_003078484.1| peptide deformylase (ISS) [Ostreococcus tauri]
gi|116056936|emb|CAL53225.1| peptide deformylase (ISS) [Ostreococcus tauri]
Length = 175
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 56/71 (78%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF +MY+T G GL+APQVG+N ++MV+N GE G+G E+VL NP++ KYS + +EEGC
Sbjct: 100 MFKIMYETVGCGLAAPQVGVNYRMMVYNEAGEPGKGREVVLCNPKIVKYSKEKDFFEEGC 159
Query: 61 LSFPGIHADVE 71
LSFP ++ADVE
Sbjct: 160 LSFPKMYADVE 170
>gi|123965312|ref|YP_001010393.1| peptide deformylase [Prochlorococcus marinus str. MIT 9515]
gi|158512726|sp|A2BU25.1|DEF_PROM5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|123199678|gb|ABM71286.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
MIT 9515]
Length = 203
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 65/108 (60%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVGI+ +L+V + E E ++L+NP + + N + YEEGC
Sbjct: 62 MLKSMYSAKGIGLAAPQVGISKELLVIDINFEDSAAEPLILINPEITAFGNTLNSYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG++ +V RP ++K+ D G ++ L AR QHE DHL+
Sbjct: 122 LSIPGVYLNVVRPSTIKLRFSDEMGRPRKMNADGLLARCIQHEVDHLR 169
>gi|88807213|ref|ZP_01122725.1| peptide deformylase [Synechococcus sp. WH 7805]
gi|88788427|gb|EAR19582.1| peptide deformylase [Synechococcus sp. WH 7805]
Length = 183
Score = 94.7 bits (234), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 63/107 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVG++ QL+V + E +VL+NP + S + YEEGC
Sbjct: 44 MLRSMYTARGIGLAAPQVGVHQQLLVIDLDPETASSPPLVLINPEIISASASLDTYEEGC 103
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV RP +V++ RD G ++ L AR QHE DHL
Sbjct: 104 LSIPGVYLDVVRPSAVQVSFRDEMGRPKTLKADGLMARCIQHEMDHL 150
>gi|116073817|ref|ZP_01471079.1| peptide deformylase [Synechococcus sp. RS9916]
gi|116069122|gb|EAU74874.1| peptide deformylase [Synechococcus sp. RS9916]
Length = 201
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 64/108 (59%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVG++ QL+V + E +VL+NP + S + YEEGC
Sbjct: 62 MLRSMYTAKGIGLAAPQVGVHKQLLVIDLDLETPSSPPLVLINPEITTASATVDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG++ DV RP ++++ RD G ++ L AR QHE DHL+
Sbjct: 122 LSIPGVYLDVVRPTAIQLSYRDEMGRPKTMKADGLMARCIQHEMDHLK 169
>gi|428768631|ref|YP_007160421.1| peptide deformylase [Cyanobacterium aponinum PCC 10605]
gi|428682910|gb|AFZ52377.1| peptide deformylase [Cyanobacterium aponinum PCC 10605]
Length = 186
Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 67/108 (62%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +GIGL+APQ+G++ Q++V + + + +VL+NP + K+S + EEGC
Sbjct: 47 MLQTMYTENGIGLAAPQIGVHKQMIVVDCQPDNPASQPMVLINPEITKFSKDLCVAEEGC 106
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS P + +V RP ++++ +D +G + + S L +RV QHE DHL
Sbjct: 107 LSIPNVFLEVIRPRNIQLTYKDESGKKHKIKASGLLSRVIQHEMDHLH 154
>gi|33864860|ref|NP_896419.1| peptide deformylase [Synechococcus sp. WH 8102]
gi|39930836|sp|Q7U9D4.1|DEF_SYNPX RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|33632383|emb|CAE06839.1| putative formylmethionine deformylase [Synechococcus sp. WH 8102]
Length = 201
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 63/107 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVGI+ QL+V + E +VL+NP ++ S + YEEGC
Sbjct: 62 MLRSMYTAKGIGLAAPQVGIHQQLLVIDLDLENAATPPLVLINPEISAASASIDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV RP ++++ RD G + L AR QHE DHL
Sbjct: 122 LSIPGVYLDVVRPTAIELSFRDEMGRPRKMKADGLMARCIQHEMDHL 168
>gi|428319570|ref|YP_007117452.1| Peptide deformylase [Oscillatoria nigro-viridis PCC 7112]
gi|428243250|gb|AFZ09036.1| Peptide deformylase [Oscillatoria nigro-viridis PCC 7112]
Length = 186
Score = 94.0 bits (232), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 66/107 (61%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG++ Q++V + E IVL+NP + S+ + +EGC
Sbjct: 48 MLQTMYSADGIGLAAPQVGVHKQVIVLDCDPENPATPPIVLINPTIKSSSSDICILQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ +V+RPE +++ RD G ++ +L +R QHE DHL
Sbjct: 108 LSIPGVYLEVKRPEVIEVSYRDEYGRPQTLIAKELLSRAIQHEMDHL 154
>gi|262374668|ref|ZP_06067941.1| peptide deformylase [Acinetobacter junii SH205]
gi|262310458|gb|EEY91549.1| peptide deformylase [Acinetobacter junii SH205]
Length = 176
Score = 94.0 bits (232), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 67/107 (62%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ GIGL+A QV ++QL+V + E+ + +V +NP+V + + PYEEGC
Sbjct: 35 MLETMYEAPGIGLAATQVDHHIQLIVMDLSEEKNQP--MVFINPKVTPLTQETQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P I+ VERP VKI+A +++G F + +L A QHE DHL
Sbjct: 93 LSVPQIYDKVERPSRVKIEAINLDGQAFELEADELLAVCIQHEMDHL 139
>gi|406040355|ref|ZP_11047710.1| peptide deformylase [Acinetobacter ursingii DSM 16037 = CIP 107286]
Length = 174
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 67/107 (62%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++QL+V + + + +V +NP+V + + PYEEGC
Sbjct: 35 MFETMYEAPGIGLAATQVDRHIQLIVMD--LSENKDQPMVFINPKVTPLTEETQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P I+ VERP VKI+A +++G F + +L A QHE DHL
Sbjct: 93 LSVPQIYDKVERPSRVKIEAINLDGQAFELEADELLAVCIQHEMDHL 139
>gi|347750547|ref|YP_004858112.1| peptide deformylase [Bacillus coagulans 36D1]
gi|347583065|gb|AEO99331.1| peptide deformylase [Bacillus coagulans 36D1]
Length = 161
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 65/109 (59%), Gaps = 6/109 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGE-EIVLVNPRVNKYSNKMIPYEEG 59
M++ M + DG+GL+APQVGIN Q+ V + G+G I L+NP++ + E G
Sbjct: 33 MYETMLEADGVGLAAPQVGINQQIAVIDT----GDGTGRIDLINPKIVTRRGEQTDVE-G 87
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
CLSFPG++ V R VK+ A+D NG F++ D AR QHE DHL
Sbjct: 88 CLSFPGVYGTVSRAHYVKVKAQDANGRAFTIEAEDFLARALQHEIDHLH 136
>gi|15606030|ref|NP_213407.1| polypeptide deformylase [Aquifex aeolicus VF5]
gi|6014949|sp|O66847.1|DEF_AQUAE RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|2983203|gb|AAC06802.1| polypeptide deformylase [Aquifex aeolicus VF5]
Length = 169
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 72/109 (66%), Gaps = 2/109 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPV-GERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
MFD MY+ +G+GL+A Q+G+ + +MV + E ++VL+NP + + K I Y+EG
Sbjct: 34 MFDTMYEAEGVGLAANQIGVPLSVMVIDTSPKEDAPPLKLVLINPEIKEGEGK-IKYKEG 92
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
CLSFPG+ +VER + VK++A + +G ++L PA VFQHE DHL+
Sbjct: 93 CLSFPGLSVEVERFQKVKVNALNEHGEPVELTLEGFPAIVFQHELDHLK 141
>gi|320537113|ref|ZP_08037086.1| peptide deformylase [Treponema phagedenis F0421]
gi|320146038|gb|EFW37681.1| peptide deformylase [Treponema phagedenis F0421]
Length = 167
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 67/107 (62%), Gaps = 5/107 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF M DGIGL+APQ+G N+++ V E+ V +NP++ + S K+ YEEGC
Sbjct: 32 MFVTMKIKDGIGLAAPQIGKNIRIFVTGV-----NNEQRVFINPQIIETSEKVCSYEEGC 86
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P I+ V RPE+V + ++I+G R ++ + L ARV QHE DHL
Sbjct: 87 LSIPQIYEKVVRPETVTVQYQNIDGRRKTLQTTGLLARVIQHENDHL 133
>gi|262371336|ref|ZP_06064654.1| peptide deformylase 1 [Acinetobacter johnsonii SH046]
gi|381198512|ref|ZP_09905850.1| peptide deformylase [Acinetobacter lwoffii WJ10621]
gi|262313673|gb|EEY94722.1| peptide deformylase 1 [Acinetobacter johnsonii SH046]
Length = 177
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++QL+V + + E + + +V +NP+V + + PYEEGC
Sbjct: 35 MFETMYEAPGIGLAATQVDRHIQLIVMD-LSEHKD-QPLVFINPKVTPLTEETQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P I+ VERP VKI+A ++ G F + +L A QHE DHL
Sbjct: 93 LSVPQIYDKVERPSRVKIEAINLEGQAFEIEADELLAVCIQHEMDHL 139
>gi|406955167|gb|EKD83746.1| peptide deformylase [uncultured bacterium]
Length = 175
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 70/107 (65%), Gaps = 6/107 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ M + G+GL+APQVG+N++L + + VG+ + +VL+NPR+ K S K +EGC
Sbjct: 34 MFETMNEAKGVGLAAPQVGVNLRLAIID-VGD----DPLVLINPRIIKSSGKET-CDEGC 87
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFPG+ VER + V +A DI+G+ + + L AR QHE DHL
Sbjct: 88 LSFPGLTEKVERAKKVVAEATDIDGSLYEIEAEGLLARAIQHELDHL 134
>gi|359427639|ref|ZP_09218687.1| peptide deformylase [Acinetobacter sp. NBRC 100985]
gi|358237056|dbj|GAB00226.1| peptide deformylase [Acinetobacter sp. NBRC 100985]
Length = 176
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 66/107 (61%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ GIGL+A QV ++QL+V + E+ + +V +NP+V + + PYEEGC
Sbjct: 35 MLETMYEAPGIGLAATQVDHHIQLIVMDLSEEKNQP--MVFINPKVTPLTQETQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P I+ VERP VKI+A ++ G F + +L A QHE DHL
Sbjct: 93 LSVPQIYDKVERPSRVKIEAINLEGQAFELEADELLAVCIQHEMDHL 139
>gi|86610195|ref|YP_478957.1| peptide deformylase [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558737|gb|ABD03694.1| peptide deformylase [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 196
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 66/107 (61%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGI +++V + ++ E +VL+NP + +Y + + +EGC
Sbjct: 50 MLQTMYSFDGIGLAAPQVGIPKRMIVVDLYPDKPEVPPLVLINPEIREYIGEAVAGQEGC 109
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG+ +V RPE + + +D G ++ DL ARV QHE DHL
Sbjct: 110 LSIPGVFCEVMRPEGIVVSFKDETGRPRTLRADDLLARVIQHEIDHL 156
>gi|414341252|ref|YP_006982773.1| N-formylmethionylaminoacyl-tRNA deformylase [Gluconobacter oxydans
H24]
gi|411026587|gb|AFV99841.1| N-formylmethionylaminoacyl-tRNA deformylase [Gluconobacter oxydans
H24]
Length = 233
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 63/107 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MYK GIGL+APQVG+ ++ + + E E +VL+NP + S +M EEGC
Sbjct: 97 MFSAMYKAPGIGLAAPQVGLGMRFALVDVAEEDAPREPMVLINPEIVTDSEQMAVREEGC 156
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+V RPES+++ RD+ G S L A QHE DHL
Sbjct: 157 LSLPNQYAEVIRPESIRVRYRDLAGEIIERDASGLLATCIQHEMDHL 203
>gi|427734665|ref|YP_007054209.1| peptide deformylase [Rivularia sp. PCC 7116]
gi|427369706|gb|AFY53662.1| peptide deformylase [Rivularia sp. PCC 7116]
Length = 187
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 68/113 (60%), Gaps = 2/113 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +DGIGL+APQVGI+ QL+V + + ++L+NP + K + +EGC
Sbjct: 48 MLQTMYSSDGIGLAAPQVGIHKQLIVIDIEPDNPANPPLILINPIIKKSFGDICVEQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PG++ DV+RPE +++ +D NG S+ L R QHE DHL VFV
Sbjct: 108 LSIPGVYLDVKRPEMIEVAYKDENGRPQSLKAGGLLGRCIQHEMDHLNGVVFV 160
>gi|425744414|ref|ZP_18862471.1| peptide deformylase [Acinetobacter baumannii WC-323]
gi|425490927|gb|EKU57218.1| peptide deformylase [Acinetobacter baumannii WC-323]
Length = 176
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 67/107 (62%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++QL+V + E+ + +V +NP+V + + PYEEGC
Sbjct: 35 MFETMYEAPGIGLAATQVDHHIQLIVMDISEEKNQP--MVFINPKVIPLTEETQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P I+ VERP VKI+A ++ G F + +L A QHE DHL
Sbjct: 93 LSVPQIYDKVERPSRVKIEAINLEGQAFELEADELLAVCIQHEMDHL 139
>gi|334121464|ref|ZP_08495532.1| Peptide deformylase [Microcoleus vaginatus FGP-2]
gi|333454983|gb|EGK83650.1| Peptide deformylase [Microcoleus vaginatus FGP-2]
Length = 186
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 66/107 (61%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG+N Q++V + E +VL+NP + + + +EGC
Sbjct: 48 MLQTMYSADGIGLAAPQVGVNKQVIVLDCDPENPATPPMVLINPTIKSSGSDICILQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ +V+RPE +++ RD G ++ ++L +R QHE DHL
Sbjct: 108 LSIPGVYLEVKRPEVIEVSYRDEYGRPQTLIATELLSRAIQHEMDHL 154
>gi|260434658|ref|ZP_05788628.1| peptide deformylase [Synechococcus sp. WH 8109]
gi|260412532|gb|EEX05828.1| peptide deformylase [Synechococcus sp. WH 8109]
Length = 201
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 62/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVGI+ QL+V + E +VL+NP + S + YEEGC
Sbjct: 62 MLRSMYTAKGIGLAAPQVGIHQQLLVIDLDLENAATPPLVLINPEITAASAGLDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV RP ++++ RD G + L AR QHE DHL
Sbjct: 122 LSIPGVYLDVVRPTAIELSFRDEMGRPRKMKADGLMARCIQHEMDHL 168
>gi|78213784|ref|YP_382563.1| peptide deformylase [Synechococcus sp. CC9605]
gi|123756848|sp|Q3AHC4.1|DEF_SYNSC RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|78198243|gb|ABB36008.1| Formylmethionine deformylase [Synechococcus sp. CC9605]
Length = 201
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 62/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVGI+ QL+V + E +VL+NP + S + YEEGC
Sbjct: 62 MLRSMYTAKGIGLAAPQVGIHQQLLVIDLDLENAATPPLVLINPEITAASAGLDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV RP ++++ RD G + L AR QHE DHL
Sbjct: 122 LSIPGVYLDVVRPTAIELSFRDEMGRPRKMKADGLMARCIQHEMDHL 168
>gi|427729378|ref|YP_007075615.1| peptide deformylase [Nostoc sp. PCC 7524]
gi|427365297|gb|AFY48018.1| peptide deformylase [Nostoc sp. PCC 7524]
Length = 187
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 68/113 (60%), Gaps = 2/113 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG++ QL+V + + ++L+NP + + S + +EGC
Sbjct: 48 MLQTMYSNDGIGLAAPQVGVHKQLIVIDCEPDNPANPPLILINPTIKQVSRDICMAQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PG++ DV+RP V++ +D G ++ +DL R QHE DHL VFV
Sbjct: 108 LSIPGVYMDVKRPAVVEVAYKDEYGRPQTLKATDLLGRCIQHEMDHLNGVVFV 160
>gi|221054422|ref|XP_002258350.1| formylmethionine deformylase [Plasmodium knowlesi strain H]
gi|193808419|emb|CAQ39122.1| formylmethionine deformylase, putative [Plasmodium knowlesi strain
H]
Length = 242
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGE-EIVLVNPRVNKYSNKMIPYEEG 59
MF+VMY++ G+GL+APQV I+++++V+N + E+ + E E V +NP + + S EG
Sbjct: 97 MFNVMYESKGMGLAAPQVNISMRIIVWNALYEKKKKENERVFINPSIVEPSLIRSKLVEG 156
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLSFP I V+RP V I D++G + L + AR+FQHE+DHL
Sbjct: 157 CLSFPDIEGKVDRPRVVSISYYDLDGNKHLKILKGIHARIFQHEYDHL 204
>gi|22299219|ref|NP_682466.1| peptide deformylase [Thermosynechococcus elongatus BP-1]
gi|39930888|sp|Q8DIB4.1|DEF_THEEB RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|22295401|dbj|BAC09228.1| polypeptide deformylase [Thermosynechococcus elongatus BP-1]
Length = 188
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 65/107 (60%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGIN Q++V + + E E +V++NP + +S ++ +EGC
Sbjct: 48 MLQTMYSADGIGLAAPQVGINKQILVIDIHPDDPEAEPLVMINPVIKDFSEELEVCQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ +V RP V++ +D G + L AR QHE DHL
Sbjct: 108 LSIPGVYLEVRRPAMVEVSYKDEWGRPQVIMAGGLLARAIQHEIDHL 154
>gi|226952176|ref|ZP_03822640.1| zinc peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA
deformylase) [Acinetobacter sp. ATCC 27244]
gi|294648885|ref|ZP_06726341.1| peptide deformylase [Acinetobacter haemolyticus ATCC 19194]
gi|226837014|gb|EEH69397.1| zinc peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA
deformylase) [Acinetobacter sp. ATCC 27244]
gi|292825276|gb|EFF84023.1| peptide deformylase [Acinetobacter haemolyticus ATCC 19194]
Length = 176
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 66/107 (61%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ GIGL+A QV ++QL+V + E+ + +V +NP+V + + PYEEGC
Sbjct: 35 MLETMYEAPGIGLAATQVDHHIQLIVMDLSEEKNQP--MVFINPKVTPLTEETQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P I+ VERP VKI+A ++ G F + +L A QHE DHL
Sbjct: 93 LSVPQIYDKVERPSRVKIEAINLEGQAFELEADELLAVCIQHEMDHL 139
>gi|113955292|ref|YP_731667.1| peptide deformylase [Synechococcus sp. CC9311]
gi|122945537|sp|Q0I7A5.1|DEF_SYNS3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|113882643|gb|ABI47601.1| peptide deformylase [Synechococcus sp. CC9311]
Length = 202
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 64/108 (59%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVG++ QL+V + E +VL+NP + S + YEEGC
Sbjct: 62 MLRSMYTASGIGLAAPQVGVHQQLLVIDLDFETPSTPPLVLINPEITTCSASVDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG++ DV RP ++++ RD G ++ L AR QHE DHL+
Sbjct: 122 LSIPGVYLDVVRPTAIQLSFRDEMGRPRTMKADGLMARCIQHEMDHLR 169
>gi|220907940|ref|YP_002483251.1| peptide deformylase [Cyanothece sp. PCC 7425]
gi|219864551|gb|ACL44890.1| peptide deformylase [Cyanothece sp. PCC 7425]
Length = 188
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 67/107 (62%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG+N QL+V + + ++LVNP + ++S ++ +EGC
Sbjct: 48 MLQTMYSADGIGLAAPQVGVNKQLIVVDIHPDEAANPPLILVNPVIREFSPEVSLGQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV+RPE +++ +D G + S L +R QHE DHL
Sbjct: 108 LSIPGVYLDVKRPEMIEVAYKDEQGRPQVLYASGLLSRAIQHEIDHL 154
>gi|163782173|ref|ZP_02177172.1| polypeptide deformylase [Hydrogenivirga sp. 128-5-R1-1]
gi|159882705|gb|EDP76210.1| polypeptide deformylase [Hydrogenivirga sp. 128-5-R1-1]
Length = 171
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 69/109 (63%), Gaps = 2/109 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGE-EIVLVNPRVNKYSNKMIPYEEG 59
MFD MY +G+GL+A Q+G+ + +MV + + + ++VL+NP V K Y+EG
Sbjct: 34 MFDTMYNAEGVGLAANQIGVPLSVMVIDTTPKEDVPDLKLVLINPEVIASEGKQ-KYKEG 92
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
CLSFPG+ +VER + VK+ A + +G V L D PA VFQHE DHL+
Sbjct: 93 CLSFPGLSVEVERAKRVKVRALNEHGEPVEVVLEDFPAIVFQHELDHLK 141
>gi|87308719|ref|ZP_01090858.1| peptide deformylase [Blastopirellula marina DSM 3645]
gi|87288430|gb|EAQ80325.1| peptide deformylase [Blastopirellula marina DSM 3645]
Length = 194
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF++MY+ GIGL+A QV + ++L V N G +GEGEE+V +NP +++ EEGC
Sbjct: 34 MFELMYENRGIGLAANQVDLPIRLFVANLSGTKGEGEELVFINPVISRPKGNE-EEEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + V+RP ++ DA ++ G FS + + ARV QHE DHL
Sbjct: 93 LSLPQVFGPVKRPAEIQFDAYNLQGELFSQRIDGMLARVVQHETDHL 139
>gi|440681156|ref|YP_007155951.1| peptide deformylase [Anabaena cylindrica PCC 7122]
gi|428678275|gb|AFZ57041.1| peptide deformylase [Anabaena cylindrica PCC 7122]
Length = 187
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 69/113 (61%), Gaps = 2/113 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGIN QL+V + ++ +VL+NP + + S+++ +EGC
Sbjct: 48 MLQTMYSEDGIGLAAPQVGINKQLIVIDCEPDKPNTPPLVLINPVIKQVSSELCIAQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS P ++ DV+RP+ V+I +D G ++ DL R HE DHL VFV
Sbjct: 108 LSIPKVYLDVKRPQVVEIAYKDEYGRPKTLKAGDLLGRCILHEMDHLNGVVFV 160
>gi|404366440|ref|ZP_10971823.1| peptide deformylase [Fusobacterium ulcerans ATCC 49185]
gi|313689290|gb|EFS26125.1| peptide deformylase [Fusobacterium ulcerans ATCC 49185]
Length = 173
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 69/112 (61%), Gaps = 4/112 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI-VLVNPRVNKYSNKMIPYEEG 59
M + MY G+GL+APQ+GI+ +++V + GEGE + +VNP + + + I +EEG
Sbjct: 34 MAETMYDKKGVGLAAPQIGISKRMLVLDW---SGEGEALRKVVNPVITPLTEEKIDWEEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQVFV 111
CLS PGI+ VER +++D + G + + L PA V QHEFDHL+ +
Sbjct: 91 CLSIPGIYKKVERVAKIRVDYLNEKGEKVTEELEGFPAIVMQHEFDHLEAVL 142
>gi|340778711|ref|ZP_08698654.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter aceti NBRC
14818]
Length = 182
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 66/107 (61%), Gaps = 1/107 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY GIGL+APQVGI+ + ++ + +G+ + + IVL+NP + S M P EEGC
Sbjct: 48 MFSAMYAAPGIGLAAPQVGISQRYVIVD-LGDAEDRQPIVLINPEILTESEVMTPREEGC 106
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+V RPE+V++ ++ G R + L A QHE DHL
Sbjct: 107 LSLPNQYAEVVRPEAVRVRWTNVEGERCEREVDGLLATCIQHEIDHL 153
>gi|403050537|ref|ZP_10905021.1| peptide deformylase [Acinetobacter bereziniae LMG 1003]
gi|445424689|ref|ZP_21437024.1| peptide deformylase [Acinetobacter sp. WC-743]
gi|444754314|gb|ELW78935.1| peptide deformylase [Acinetobacter sp. WC-743]
Length = 176
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 66/107 (61%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++QL+V + + + +V +NP++ + + YEEGC
Sbjct: 35 MFETMYEAPGIGLAATQVDQHIQLIVMD--LSENKDQPMVFINPKITPLTEETFSYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P I+ VERP VKI+A D++G F + +L A QHE DHL
Sbjct: 93 LSVPQIYDKVERPSRVKIEAIDLDGKAFELEADELLAVCIQHEMDHL 139
>gi|224534861|ref|ZP_03675430.1| peptide deformylase [Borrelia spielmanii A14S]
gi|224513801|gb|EEF84126.1| peptide deformylase [Borrelia spielmanii A14S]
Length = 165
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 70/107 (65%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M + G+GL+APQVG+++ L V V E + +V +NP + + S ++ Y+EGC
Sbjct: 32 MIELMDISSGVGLAAPQVGLDLSLFV---VRENKMAKPLVFINPLITETSYELNSYKEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ D+ RP+++ ++ D NG F++ SD AR+ QHE DHL
Sbjct: 89 LSIPGVYYDLMRPKTIVVNFYDENGKSFTIENSDFLARIIQHEMDHL 135
>gi|255319595|ref|ZP_05360807.1| peptide deformylase [Acinetobacter radioresistens SK82]
gi|262380781|ref|ZP_06073934.1| peptide deformylase [Acinetobacter radioresistens SH164]
gi|421464567|ref|ZP_15913257.1| peptide deformylase [Acinetobacter radioresistens WC-A-157]
gi|421857579|ref|ZP_16289911.1| peptide deformylase [Acinetobacter radioresistens DSM 6976 = NBRC
102413]
gi|255303350|gb|EET82555.1| peptide deformylase [Acinetobacter radioresistens SK82]
gi|262297729|gb|EEY85645.1| peptide deformylase [Acinetobacter radioresistens SH164]
gi|400205320|gb|EJO36301.1| peptide deformylase [Acinetobacter radioresistens WC-A-157]
gi|403187002|dbj|GAB76112.1| peptide deformylase [Acinetobacter radioresistens DSM 6976 = NBRC
102413]
Length = 176
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++QL+V + E+ + +V +NP++ + PYEEGC
Sbjct: 35 MFETMYEAPGIGLAATQVDRHIQLIVMDLSEEKNQP--MVFINPKITPLTEDTQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P I+ VERP VKI+A ++ G F + L A QHE DHL
Sbjct: 93 LSVPQIYDKVERPSRVKIEALNLEGNAFEIEADGLLAVCIQHEMDHL 139
>gi|110832992|ref|YP_691851.1| peptide deformylase [Alcanivorax borkumensis SK2]
gi|122959726|sp|Q0VTE1.1|DEF_ALCBS RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|110646103|emb|CAL15579.1| peptide deformylase [Alcanivorax borkumensis SK2]
Length = 168
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV +++QL+V + + +V +NP++ + + PYEEGC
Sbjct: 35 MFETMYAAPGIGLAATQVDVHIQLIVMD--LSEDHNKPMVFINPQITPLTEEQAPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + V RP V+I+A D +G F V +L A QHE DHL
Sbjct: 93 LSVPGFYEKVTRPARVRINALDRDGNAFEVEADELLATCIQHEMDHL 139
>gi|333985556|ref|YP_004514766.1| peptide deformylase [Methylomonas methanica MC09]
gi|333809597|gb|AEG02267.1| Peptide deformylase [Methylomonas methanica MC09]
Length = 176
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 70/114 (61%), Gaps = 5/114 (4%)
Query: 3 DVMYKTDGIGLSAPQVGINVQLMVF--NPVGERGEGEE---IVLVNPRVNKYSNKMIPYE 57
D M+++ G+G++APQ+G + Q+++ P + E +V+VNP+ N++I
Sbjct: 40 DRMFESGGVGIAAPQLGASWQIIIVASRPTERYPDAPEMAPVVVVNPQFQIMDNRLIKDW 99
Query: 58 EGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQVFV 111
EGCLS PGI A V R S+ +D +D+NG L D PARVFQHE+DHLQ V
Sbjct: 100 EGCLSVPGIRALVPRYRSIHVDYQDLNGQPRQTVLEDFPARVFQHEYDHLQGLV 153
>gi|402757023|ref|ZP_10859279.1| peptide deformylase [Acinetobacter sp. NCTC 7422]
Length = 176
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 66/107 (61%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++QL+V + E+ + +V +NP+V + PYEEGC
Sbjct: 35 MFETMYEAPGIGLAATQVDHHIQLIVMDISEEKNQP--MVFINPKVIPLTEDTQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P I+ VERP VKI+A ++ G F + +L A QHE DHL
Sbjct: 93 LSVPQIYDKVERPSRVKIEAINLEGQAFELEADELLAVCIQHEMDHL 139
>gi|352096053|ref|ZP_08957000.1| Peptide deformylase [Synechococcus sp. WH 8016]
gi|351677409|gb|EHA60558.1| Peptide deformylase [Synechococcus sp. WH 8016]
Length = 182
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 64/108 (59%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVG++ QL+V + E +VL+NP + S + YEEGC
Sbjct: 42 MLRSMYTARGIGLAAPQVGVHQQLLVIDLDFETPSTPPLVLINPEITTCSASVDTYEEGC 101
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG++ DV RP ++++ RD G ++ L AR QHE DHL+
Sbjct: 102 LSIPGVYLDVVRPTAIQLSFRDEMGRPRTMKADGLMARCIQHEMDHLR 149
>gi|239617141|ref|YP_002940463.1| peptide deformylase [Kosmotoga olearia TBF 19.5.1]
gi|239505972|gb|ACR79459.1| peptide deformylase [Kosmotoga olearia TBF 19.5.1]
Length = 164
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 69/107 (64%), Gaps = 5/107 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
+ +MYK DG+GL+APQV + ++ VF+ G G + V++NP + + S +++ EEGC
Sbjct: 32 LTSIMYKEDGVGLAAPQVAVLKRMFVFDD----GSGPK-VIINPEILEKSKELVIMEEGC 86
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ADVERPE VK+ +D++G R+ QHE+DHL
Sbjct: 87 LSIPGVYADVERPEWVKMRYQDVDGNVHEELFEGYAGRIVQHEYDHL 133
>gi|378824654|ref|YP_005187386.1| peptide deformylase [Sinorhizobium fredii HH103]
gi|365177706|emb|CCE94561.1| peptide deformylase [Sinorhizobium fredii HH103]
Length = 174
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 65/107 (60%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G++ +L+V + E E + +V +NP++ K + + YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVSKRLLVLDVSKEGEEKKPLVFINPKIVKSTEERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP + ++ RD +G SV L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPAGITVEYRDRDGKEQSVEADGLLATCLQHEIDHL 141
>gi|336113758|ref|YP_004568525.1| peptide deformylase [Bacillus coagulans 2-6]
gi|335367188|gb|AEH53139.1| peptide deformylase [Bacillus coagulans 2-6]
Length = 161
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 66/109 (60%), Gaps = 6/109 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGE-EIVLVNPRVNKYSNKMIPYEEG 59
M++ M + DG+GL+APQVGI+ Q+ V + G+G I L+NP++ + E G
Sbjct: 33 MYETMLEADGVGLAAPQVGISQQIAVVDT----GDGTGRIDLINPKIVTRRGEQTDVE-G 87
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
CLSFPG++ V+R VK+ A+D NG F++ D AR QHE DHL
Sbjct: 88 CLSFPGVYGTVQRARYVKVKAQDANGKAFTIEAEDFLARALQHEIDHLH 136
>gi|330993401|ref|ZP_08317336.1| Peptide deformylase [Gluconacetobacter sp. SXCC-1]
gi|329759431|gb|EGG75940.1| Peptide deformylase [Gluconacetobacter sp. SXCC-1]
Length = 180
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 65/108 (60%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY+ GIGL+APQVG+ ++ + + + G IVL+NP V ++ M EEGC
Sbjct: 45 MFAAMYQAPGIGLAAPQVGLGMRFAIVDVSDKDGPRNPIVLINPEVIAETDSMAAREEGC 104
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS P +A+V RPE+V++ +D+ G + DL A QHE DHL+
Sbjct: 105 LSLPNQYAEVVRPEAVRVRYQDMEGKVQELEADDLLATCLQHEIDHLE 152
>gi|428227261|ref|YP_007111358.1| peptide deformylase [Geitlerinema sp. PCC 7407]
gi|427987162|gb|AFY68306.1| peptide deformylase [Geitlerinema sp. PCC 7407]
Length = 187
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 63/107 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQV + QL+V + + ++L+NP + + S + +EGC
Sbjct: 48 MLQTMYSADGIGLAAPQVAVQKQLIVVDCEPDDATTPPLILINPAIQRASRDVCMAQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV+RPE +++ +D G + S L +R QHE DHL
Sbjct: 108 LSIPGVYLDVQRPEVIEVSYKDEQGRPQKLMASGLLSRAIQHEMDHL 154
>gi|406834652|ref|ZP_11094246.1| peptide deformylase [Schlesneria paludicola DSM 18645]
Length = 199
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEG-EEIVLVNPRVNKYSNKMIPYEEG 59
MF +MY GIGL+A QVG+ +L V N + E EEIV +NP + K EEG
Sbjct: 32 MFSLMYTAKGIGLAANQVGLPYRLFVLNLTADPEEKDEEIVFINPEILKRKG-TTEGEEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLSFPG++ V+R V I+A D+NG SL DL AR QHE DHL
Sbjct: 91 CLSFPGMYGPVKRAAKVVIEAFDLNGECIEYSLDDLAARAVQHETDHL 138
>gi|50235447|gb|AAT70831.1| polypeptide deformylase [Borrelia hermsii]
Length = 185
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 70/108 (64%), Gaps = 3/108 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M G+GL+APQVG+++ + V V E + +V +NP + + S ++ Y+EGC
Sbjct: 52 MVNLMDINKGVGLAAPQVGLDLSIFV---VRENVMSKPLVFINPLITETSFELSVYKEGC 108
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG++ D+ RP+S+ ++A D NG F + S L ARV QHE DHL+
Sbjct: 109 LSIPGVYYDLLRPKSITVEAYDENGKFFKIESSSLLARVVQHEMDHLK 156
>gi|89052957|ref|YP_508408.1| peptide deformylase [Jannaschia sp. CCS1]
gi|88862506|gb|ABD53383.1| peptide deformylase [Jannaschia sp. CCS1]
Length = 174
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 66/111 (59%), Gaps = 5/111 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEG---EEIVLVNPRVNKYSNKMIPYE 57
M MY GIGL+APQVG+ +L+V + E+G+ + + NP V S++M Y+
Sbjct: 34 MLSTMYDAPGIGLAAPQVGVGQRLIVLD--CEKGDDVTPRPLAMFNPEVIASSDEMNTYD 91
Query: 58 EGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
EGCLS P I+ADV RPE+V + D+NGA + L A QHE DHL+
Sbjct: 92 EGCLSIPDIYADVTRPEAVTVRWMDVNGAEQEETFDGLWATCVQHEIDHLE 142
>gi|254460256|ref|ZP_05073672.1| peptide deformylase [Rhodobacterales bacterium HTCC2083]
gi|206676845|gb|EDZ41332.1| peptide deformylase [Rhodobacteraceae bacterium HTCC2083]
Length = 172
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 69/109 (63%), Gaps = 1/109 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERG-EGEEIVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQVG+ +++V + V E G + E +V+VNPRV S++ Y+EG
Sbjct: 34 MLETMYTAPGIGLAAPQVGVLERMIVLDCVKEDGAKPEPLVMVNPRVIAASDETNVYDEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
CLS P +ADV RP+ V+++ D++G + L A QHE DHL+
Sbjct: 94 CLSIPDQYADVTRPKEVRVEWLDLDGNLQKRDMDGLWATCVQHEIDHLE 142
>gi|254429252|ref|ZP_05042959.1| peptide deformylase [Alcanivorax sp. DG881]
gi|196195421|gb|EDX90380.1| peptide deformylase [Alcanivorax sp. DG881]
Length = 168
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 66/107 (61%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QV ++ +L+V + ER E + V +NP++ ++++ PYEEGC
Sbjct: 35 MIETMYDASGIGLAATQVNVHQRLLVMDLSEERNEPK--VYINPQITPLTDELAPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + V+R V+I+A D +G F V +L A QHE DHL
Sbjct: 93 LSVPGFYEKVKRAARVRINALDRDGNAFEVEADELLATCIQHEIDHL 139
>gi|408374191|ref|ZP_11171880.1| peptide deformylase [Alcanivorax hongdengensis A-11-3]
gi|407765852|gb|EKF74300.1| peptide deformylase [Alcanivorax hongdengensis A-11-3]
Length = 168
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 67/113 (59%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++++L+V + ++ E V +NP + ++ PYEEGC
Sbjct: 35 MFETMYDAPGIGLAASQVNVHIRLIVMDLSEDKSEPR--VFINPEITPLTDDTAPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LS PG + VERP V+I A D +G F +L A QHE DHL ++FV
Sbjct: 93 LSVPGFYEKVERPARVRIKALDRDGNTFEEEADELLATCIQHEIDHLDGKLFV 145
>gi|303256332|ref|ZP_07342348.1| peptide deformylase [Burkholderiales bacterium 1_1_47]
gi|330999027|ref|ZP_08322752.1| peptide deformylase [Parasutterella excrementihominis YIT 11859]
gi|302861061|gb|EFL84136.1| peptide deformylase [Burkholderiales bacterium 1_1_47]
gi|329575769|gb|EGG57295.1| peptide deformylase [Parasutterella excrementihominis YIT 11859]
Length = 175
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 70/113 (61%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MYK G+GL+A QV +++L+V + E+ + + VLVNP + + S + P+EEGC
Sbjct: 35 MAETMYKAPGVGLAATQVDRHIRLIVIDITEEKNDLK--VLVNPELVESSEETKPWEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PGI+ V RP VK+ A+D+ G F + L A QHE DHL+ VFV
Sbjct: 93 LSLPGIYDKVTRPAKVKVKAQDLEGNFFELECDGLLAVCVQHEMDHLEGTVFV 145
>gi|339500918|ref|YP_004698953.1| peptide deformylase [Spirochaeta caldaria DSM 7334]
gi|338835267|gb|AEJ20445.1| Peptide deformylase [Spirochaeta caldaria DSM 7334]
Length = 161
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 67/108 (62%), Gaps = 4/108 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + M++ GIGL+ PQVG+ ++ V G+ V +NP + S++++ YEEGC
Sbjct: 32 MIETMHRGRGIGLAGPQVGLLQRIFVVQVDGDSPR----VFINPTIIGTSSEIVQYEEGC 87
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG++ADV RPE V I A + G F++ L ARV QHE+DHL+
Sbjct: 88 LSIPGLYADVTRPEKVTIQAWNERGRPFTLDADGLLARVIQHEYDHLE 135
>gi|428213943|ref|YP_007087087.1| peptide deformylase [Oscillatoria acuminata PCC 6304]
gi|428002324|gb|AFY83167.1| peptide deformylase [Oscillatoria acuminata PCC 6304]
Length = 187
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 64/107 (59%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG+ Q++V + E +VL+NP + K+ Y+EGC
Sbjct: 48 MLQSMYTADGIGLAAPQVGVQKQVIVVDCDLENPATPPLVLINPVIKKFGGDECTYQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV+RPE +++ +D G ++ + +R QHE DHL
Sbjct: 108 LSIPGVYLDVKRPEIIEVAFKDERGRPQKLTAKGIVSRCIQHEMDHL 154
>gi|338210328|ref|YP_004654375.1| peptide deformylase [Runella slithyformis DSM 19594]
gi|336304141|gb|AEI47243.1| Peptide deformylase [Runella slithyformis DSM 19594]
Length = 190
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 72/119 (60%), Gaps = 11/119 (9%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGERG---------EGEEIVLVNPRVNKY 49
M+ MY + GIGL+APQ+G +++L V + P+ E EG + V +NP + +
Sbjct: 34 MYQTMYDSSGIGLAAPQIGQSIRLFVVDGTPLNEDEQEEDKDPSLEGFKKVFINPEMLEE 93
Query: 50 SNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
+ + +EEGCLS PGI ADV RPE+VKI RD++ + + AR+ QHE+DHL+
Sbjct: 94 TGEEWGFEEGCLSIPGIRADVYRPETVKIKYRDMDWNEHVETYGGMAARIIQHEYDHLE 152
>gi|187917944|ref|YP_001883507.1| peptide deformylase [Borrelia hermsii DAH]
gi|119860792|gb|AAX16587.1| peptide deformylase [Borrelia hermsii DAH]
Length = 174
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 70/108 (64%), Gaps = 3/108 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M G+GL+APQVG+++ + V V E + +V +NP + + S ++ Y+EGC
Sbjct: 41 MVNLMDINKGVGLAAPQVGLDLSIFV---VRENVMSKPLVFINPLITETSFELSVYKEGC 97
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG++ D+ RP+S+ ++A D NG F + S L ARV QHE DHL+
Sbjct: 98 LSIPGVYYDLLRPKSITVEAYDENGKFFKIESSSLLARVVQHEMDHLK 145
>gi|339024890|ref|ZP_08646782.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter tropicalis
NBRC 101654]
gi|338750100|dbj|GAA10086.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter tropicalis
NBRC 101654]
Length = 188
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY+ GIGL+APQVG++++ + + +GE+ E I+++NP V S + EEGC
Sbjct: 53 MFSAMYEAPGIGLAAPQVGLSLRFALVD-LGEKDAREPIIMINPEVVAESETLAAREEGC 111
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS P +A+V RPE V++ R + G + L A QHE DHL+
Sbjct: 112 LSLPNQYAEVTRPEQVRVKWRSLEGDLIEREVDGLLATCMQHEIDHLE 159
>gi|20150600|pdb|1JYM|A Chain A, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
gi|20150601|pdb|1JYM|B Chain B, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
gi|20150602|pdb|1JYM|C Chain C, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
gi|20150603|pdb|1JYM|D Chain D, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
gi|20150604|pdb|1JYM|E Chain E, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
gi|20150605|pdb|1JYM|F Chain F, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
gi|20150606|pdb|1JYM|G Chain G, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
gi|20150607|pdb|1JYM|H Chain H, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
gi|20150608|pdb|1JYM|I Chain I, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
gi|20150609|pdb|1JYM|J Chain J, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
Length = 183
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Query: 2 FDVMYKTDGIGLSAPQVGINVQLMVFNPVGE-RGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
FD+ Y++ GIGLSAPQV I+ +++V+N + E R E E + +NP + + S + EGC
Sbjct: 34 FDIXYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPSIVEQSLVKLKLIEGC 93
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSF GI VERP V I DING + L + +R+FQHEFDHL
Sbjct: 94 LSF-GIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHL 139
>gi|195941804|ref|ZP_03087186.1| polypeptide deformylase (def) [Borrelia burgdorferi 80a]
gi|223889134|ref|ZP_03623723.1| peptide deformylase [Borrelia burgdorferi 64b]
gi|224533042|ref|ZP_03673648.1| peptide deformylase [Borrelia burgdorferi WI91-23]
gi|226320763|ref|ZP_03796319.1| peptide deformylase [Borrelia burgdorferi 29805]
gi|226322023|ref|ZP_03797548.1| peptide deformylase [Borrelia burgdorferi Bol26]
gi|223885383|gb|EEF56484.1| peptide deformylase [Borrelia burgdorferi 64b]
gi|224512036|gb|EEF82431.1| peptide deformylase [Borrelia burgdorferi WI91-23]
gi|226232613|gb|EEH31367.1| peptide deformylase [Borrelia burgdorferi Bol26]
gi|226233818|gb|EEH32543.1| peptide deformylase [Borrelia burgdorferi 29805]
Length = 165
Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 69/107 (64%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M + G+GL+APQVG+++ L V V E +V +NP + + S ++ Y+EGC
Sbjct: 32 MIELMDISGGVGLAAPQVGLDLALFV---VRENKMARPLVFINPSIIETSYELSSYKEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ D+ RP++V I+ D NG F++ SD AR+ QHE DHL
Sbjct: 89 LSIPGVYYDLMRPKAVVINFHDENGKSFTIENSDFLARIIQHEMDHL 135
>gi|428773914|ref|YP_007165702.1| peptide deformylase [Cyanobacterium stanieri PCC 7202]
gi|428688193|gb|AFZ48053.1| peptide deformylase [Cyanobacterium stanieri PCC 7202]
Length = 199
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 63/107 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +GIGL+APQVG+N Q++V + + +V++NP + KYS + EEGC
Sbjct: 60 MLQTMYAENGIGLAAPQVGVNKQMIVVDLQPDNETNPPLVMINPVIKKYSKDVCVLEEGC 119
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + DV RP ++++ +++ G + ARV QHE DHL
Sbjct: 120 LSIPNVFFDVTRPSKIEVEFKNLEGKLQRIKAIGWMARVIQHEMDHL 166
>gi|387825724|ref|YP_005805177.1| peptide deformylase [Borrelia burgdorferi JD1]
gi|387826988|ref|YP_005806270.1| peptide deformylase [Borrelia burgdorferi N40]
gi|312148406|gb|ADQ31065.1| peptide deformylase [Borrelia burgdorferi JD1]
gi|312149552|gb|ADQ29623.1| peptide deformylase [Borrelia burgdorferi N40]
Length = 165
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 69/107 (64%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M + G+GL+APQVG+++ L V V E +V +NP + + S ++ Y+EGC
Sbjct: 32 MIELMDISGGVGLAAPQVGLDLALFV---VRENKMARPLVFINPSIIETSYELSSYKEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ D+ RP++V I+ D NG F++ SD AR+ QHE DHL
Sbjct: 89 LSIPGVYYDLMRPKAVVINFHDENGKSFTIENSDFLARIIQHEMDHL 135
>gi|225552226|ref|ZP_03773166.1| peptide deformylase [Borrelia sp. SV1]
gi|225371224|gb|EEH00654.1| peptide deformylase [Borrelia sp. SV1]
Length = 165
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 69/107 (64%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M + G+GL+APQVG+++ L V V E +V +NP + + S ++ Y+EGC
Sbjct: 32 MIELMDISGGVGLAAPQVGLDLALFV---VRENKMARPLVFINPSIIETSYELSSYKEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ D+ RP++V I+ D NG F++ SD AR+ QHE DHL
Sbjct: 89 LSIPGVYYDLMRPKAVVINFHDENGKSFTIENSDFLARIIQHEMDHL 135
>gi|296115067|ref|ZP_06833709.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769]
gi|295978404|gb|EFG85140.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769]
Length = 180
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 67/109 (61%), Gaps = 2/109 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
MF MYK GIGL+APQVG+ ++ + + V ++ E +VL+NP + + M EEG
Sbjct: 45 MFAAMYKAPGIGLAAPQVGLGLRFALVD-VADKDEARNPMVLINPDIIAETETMSVREEG 103
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
CLS P +A+V RPESV++ +D+ G R + + L A QHE DHL+
Sbjct: 104 CLSLPNQYAEVARPESVRVRYQDLEGKRHEIEVDGLLATCIQHEIDHLE 152
>gi|162147911|ref|YP_001602372.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5]
gi|209542528|ref|YP_002274757.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5]
gi|161786488|emb|CAP56070.1| Peptide deformylase [Gluconacetobacter diazotrophicus PAl 5]
gi|209530205|gb|ACI50142.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5]
Length = 179
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY+ GIGL+APQVG+ ++ + + +GE GE + ++L+NP V S+ + EEGC
Sbjct: 45 MFAAMYQAPGIGLAAPQVGMGLRFAIVD-LGEEGERQPLILINPDVIAESDSLASREEGC 103
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS P +A+V RP+ V++ R ++G + L A QHE DHL+
Sbjct: 104 LSLPNQYAEVIRPDRVRVRYRTLDGTEEELEADGLLATCIQHEIDHLE 151
>gi|389721250|ref|ZP_10188004.1| peptide deformylase [Acinetobacter sp. HA]
gi|388609080|gb|EIM38274.1| peptide deformylase [Acinetobacter sp. HA]
Length = 176
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++QL+V + ++ + +V +NP++ + + PYEEGC
Sbjct: 35 MFETMYEAPGIGLAATQVDRHIQLIVMDLSEDKDQP--MVFINPKITPLTEETQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P I+ VERP VKI A ++ G F V L A QHE DHL
Sbjct: 93 LSVPQIYDKVERPSRVKIQAINLEGQAFEVEADGLLAVCIQHEMDHL 139
>gi|386859293|ref|YP_006271999.1| Peptide deformylase [Borrelia crocidurae str. Achema]
gi|384934174|gb|AFI30847.1| Peptide deformylase [Borrelia crocidurae str. Achema]
Length = 165
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 70/108 (64%), Gaps = 3/108 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M +M K+ G+GL+APQVG+++ + V V + + +V +NP + S ++ Y+EGC
Sbjct: 32 MIGLMDKSKGVGLAAPQVGLDLSIFV---VRKNMMSKPLVFINPVITSKSIELSVYKEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG++ D+ RP+S+ I+A D NG F + D+ AR+ QHE DHL+
Sbjct: 89 LSIPGVYYDLSRPKSIVIEAYDENGKFFKIEDLDILARIIQHEMDHLK 136
>gi|203283991|ref|YP_002221731.1| polypeptide deformylase [Borrelia duttonii Ly]
gi|203287534|ref|YP_002222549.1| polypeptide deformylase [Borrelia recurrentis A1]
gi|201083434|gb|ACH93025.1| polypeptide deformylase [Borrelia duttonii Ly]
gi|201084754|gb|ACH94328.1| polypeptide deformylase [Borrelia recurrentis A1]
Length = 165
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 70/108 (64%), Gaps = 3/108 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M +M K+ G+GL+APQVG+++ + V V + + +V +NP + S ++ Y+EGC
Sbjct: 32 MIGLMDKSKGVGLAAPQVGLDLSIFV---VRKNMMSKPLVFINPVITSKSVELSVYKEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG++ D+ RP+S+ I+A D NG F + D+ AR+ QHE DHL+
Sbjct: 89 LSIPGVYYDLSRPKSIVIEAYDENGKFFKIEDLDILARIIQHEMDHLK 136
>gi|126738020|ref|ZP_01753741.1| peptide deformylase [Roseobacter sp. SK209-2-6]
gi|126720517|gb|EBA17222.1| peptide deformylase [Roseobacter sp. SK209-2-6]
Length = 168
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 60/108 (55%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY G GL+APQVG+ +L V + + G G +V++NP + Y EGC
Sbjct: 33 MFETMYAAPGRGLAAPQVGVMHRLFVMDATWKEGPGSPVVMINPEIMAYDGGTDILAEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PGI DVER +SV + +D G S AR QHEFDHL+
Sbjct: 93 LSIPGITIDVERSKSVNMRWQDQAGDWQERWFSGFEARCIQHEFDHLE 140
>gi|156097168|ref|XP_001614617.1| formylmethionine deformylase [Plasmodium vivax Sal-1]
gi|148803491|gb|EDL44890.1| formylmethionine deformylase, putative [Plasmodium vivax]
Length = 186
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGE-EIVLVNPRVNKYSNKMIPYEEG 59
MF+VMY++ G+GL+APQV I+ +++V+N + E+ + E E V +NP + + S EG
Sbjct: 41 MFNVMYESKGMGLAAPQVNISRRIIVWNALYEKKKKENERVFINPSIVEPSLVRSKLVEG 100
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLSFP I V+RP V I D++G + L + AR+FQHE+DHL
Sbjct: 101 CLSFPDIEGKVDRPSVVSISYYDLDGNKHLKILKGIHARIFQHEYDHL 148
>gi|260554281|ref|ZP_05826531.1| peptide deformylase 1 [Acinetobacter sp. RUH2624]
gi|424057319|ref|ZP_17794836.1| peptide deformylase [Acinetobacter nosocomialis Ab22222]
gi|425739180|ref|ZP_18857390.1| peptide deformylase [Acinetobacter baumannii WC-487]
gi|445439125|ref|ZP_21441542.1| peptide deformylase [Acinetobacter baumannii OIFC021]
gi|260404590|gb|EEW98110.1| peptide deformylase 1 [Acinetobacter sp. RUH2624]
gi|407440852|gb|EKF47369.1| peptide deformylase [Acinetobacter nosocomialis Ab22222]
gi|425497074|gb|EKU63187.1| peptide deformylase [Acinetobacter baumannii WC-487]
gi|444752434|gb|ELW77119.1| peptide deformylase [Acinetobacter baumannii OIFC021]
Length = 176
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 65/108 (60%), Gaps = 2/108 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++QL+V + + E +V +NP++ + + PYEEGC
Sbjct: 35 MFETMYAAPGIGLAASQVDRHIQLIVMD--LSESKDEPMVFINPKITPLTEETQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS P I+ V+RP VKI+A ++ G F + L A QHE DHL+
Sbjct: 93 LSVPQIYDKVDRPSRVKIEAINLEGQAFEIEADGLLAVCIQHEMDHLK 140
>gi|410943115|ref|ZP_11374856.1| N-formylmethionylaminoacyl-tRNA deformylase [Gluconobacter
frateurii NBRC 101659]
Length = 229
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 62/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MYK GIGL+APQVG+ ++ + + E E +VL+NP + S +M EEGC
Sbjct: 93 MFSAMYKAPGIGLAAPQVGLGMRFALVDVAEEDAPREPMVLINPEIVTDSEQMAVREEGC 152
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+V RPES+++ RD+ G L A QHE DHL
Sbjct: 153 LSLPNQYAEVIRPESIRVRYRDLAGEIIERDADGLLATCIQHEMDHL 199
>gi|169632177|ref|YP_001705913.1| peptide deformylase [Acinetobacter baumannii SDF]
gi|238688145|sp|B0VNL8.1|DEF_ACIBS RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|169150969|emb|CAO99588.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
binds Zn(II)) [Acinetobacter baumannii]
Length = 176
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++QL+V + + E +V +NP+V + + PYEEGC
Sbjct: 35 MFETMYAAPGIGLAASQVDRHIQLIVMD--LSESKDEPMVFINPKVTPLTEETQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P I+ V+RP VKI+A ++ G F + L A QHE DHL
Sbjct: 93 LSVPQIYDKVDRPSRVKIEAINLEGQAFEIEADGLLAVCIQHEMDHL 139
>gi|169797633|ref|YP_001715426.1| peptide deformylase [Acinetobacter baumannii AYE]
gi|184156510|ref|YP_001844849.1| peptide deformylase [Acinetobacter baumannii ACICU]
gi|213155573|ref|YP_002317618.1| peptide deformylase [Acinetobacter baumannii AB0057]
gi|215484987|ref|YP_002327228.1| peptide deformylase [Acinetobacter baumannii AB307-0294]
gi|239503032|ref|ZP_04662342.1| peptide deformylase [Acinetobacter baumannii AB900]
gi|260557576|ref|ZP_05829790.1| peptide deformylase [Acinetobacter baumannii ATCC 19606 = CIP
70.34]
gi|301346868|ref|ZP_07227609.1| peptide deformylase [Acinetobacter baumannii AB056]
gi|301512296|ref|ZP_07237533.1| peptide deformylase [Acinetobacter baumannii AB058]
gi|301594510|ref|ZP_07239518.1| peptide deformylase [Acinetobacter baumannii AB059]
gi|332852665|ref|ZP_08434319.1| peptide deformylase [Acinetobacter baumannii 6013150]
gi|332869381|ref|ZP_08438759.1| peptide deformylase [Acinetobacter baumannii 6013113]
gi|332875644|ref|ZP_08443456.1| peptide deformylase [Acinetobacter baumannii 6014059]
gi|384130158|ref|YP_005512770.1| Peptide deformylase 1 [Acinetobacter baumannii 1656-2]
gi|384141439|ref|YP_005524149.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
binds Zn(II)) [Acinetobacter baumannii MDR-ZJ06]
gi|385235738|ref|YP_005797077.1| peptide deformylase [Acinetobacter baumannii TCDC-AB0715]
gi|387125603|ref|YP_006291485.1| peptide deformylase [Acinetobacter baumannii MDR-TJ]
gi|403673529|ref|ZP_10935824.1| peptide deformylase [Acinetobacter sp. NCTC 10304]
gi|407931077|ref|YP_006846720.1| peptide deformylase [Acinetobacter baumannii TYTH-1]
gi|416146390|ref|ZP_11601094.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii AB210]
gi|417546097|ref|ZP_12197183.1| peptide deformylase [Acinetobacter baumannii OIFC032]
gi|417548197|ref|ZP_12199278.1| peptide deformylase [Acinetobacter baumannii Naval-18]
gi|417553466|ref|ZP_12204535.1| peptide deformylase [Acinetobacter baumannii Naval-81]
gi|417562528|ref|ZP_12213407.1| peptide deformylase [Acinetobacter baumannii OIFC137]
gi|417566767|ref|ZP_12217639.1| peptide deformylase [Acinetobacter baumannii OIFC143]
gi|417570941|ref|ZP_12221798.1| peptide deformylase [Acinetobacter baumannii OIFC189]
gi|417574855|ref|ZP_12225708.1| peptide deformylase [Acinetobacter baumannii Canada BC-5]
gi|417576185|ref|ZP_12227030.1| peptide deformylase [Acinetobacter baumannii Naval-17]
gi|417870153|ref|ZP_12515124.1| peptide deformylase [Acinetobacter baumannii ABNIH1]
gi|417875941|ref|ZP_12520737.1| peptide deformylase [Acinetobacter baumannii ABNIH2]
gi|417877304|ref|ZP_12522029.1| peptide deformylase [Acinetobacter baumannii ABNIH3]
gi|417883947|ref|ZP_12528156.1| peptide deformylase [Acinetobacter baumannii ABNIH4]
gi|421199564|ref|ZP_15656725.1| peptide deformylase [Acinetobacter baumannii OIFC109]
gi|421201880|ref|ZP_15659034.1| peptide deformylase [Acinetobacter baumannii AC12]
gi|421456710|ref|ZP_15906048.1| peptide deformylase [Acinetobacter baumannii IS-123]
gi|421534158|ref|ZP_15980434.1| peptide deformylase [Acinetobacter baumannii AC30]
gi|421622616|ref|ZP_16063517.1| peptide deformylase [Acinetobacter baumannii OIFC074]
gi|421624430|ref|ZP_16065302.1| peptide deformylase [Acinetobacter baumannii OIFC098]
gi|421631481|ref|ZP_16072150.1| peptide deformylase [Acinetobacter baumannii OIFC180]
gi|421633196|ref|ZP_16073834.1| peptide deformylase [Acinetobacter baumannii Naval-13]
gi|421642081|ref|ZP_16082608.1| peptide deformylase [Acinetobacter baumannii IS-235]
gi|421646589|ref|ZP_16087036.1| peptide deformylase [Acinetobacter baumannii IS-251]
gi|421650626|ref|ZP_16091000.1| peptide deformylase [Acinetobacter baumannii OIFC0162]
gi|421656910|ref|ZP_16097197.1| peptide deformylase [Acinetobacter baumannii Naval-72]
gi|421657875|ref|ZP_16098122.1| peptide deformylase [Acinetobacter baumannii Naval-83]
gi|421663347|ref|ZP_16103495.1| peptide deformylase [Acinetobacter baumannii OIFC110]
gi|421666529|ref|ZP_16106619.1| peptide deformylase [Acinetobacter baumannii OIFC087]
gi|421672013|ref|ZP_16111980.1| peptide deformylase [Acinetobacter baumannii OIFC099]
gi|421672896|ref|ZP_16112847.1| peptide deformylase [Acinetobacter baumannii OIFC065]
gi|421679002|ref|ZP_16118882.1| peptide deformylase [Acinetobacter baumannii OIFC111]
gi|421689043|ref|ZP_16128729.1| peptide deformylase [Acinetobacter baumannii IS-143]
gi|421690063|ref|ZP_16129735.1| peptide deformylase [Acinetobacter baumannii IS-116]
gi|421697313|ref|ZP_16136877.1| peptide deformylase [Acinetobacter baumannii WC-692]
gi|421700865|ref|ZP_16140377.1| peptide deformylase [Acinetobacter baumannii IS-58]
gi|421701788|ref|ZP_16141277.1| peptide deformylase [Acinetobacter baumannii ZWS1122]
gi|421705600|ref|ZP_16145026.1| peptide deformylase [Acinetobacter baumannii ZWS1219]
gi|421788378|ref|ZP_16224680.1| peptide deformylase [Acinetobacter baumannii Naval-82]
gi|421793879|ref|ZP_16229995.1| peptide deformylase [Acinetobacter baumannii Naval-2]
gi|421798466|ref|ZP_16234487.1| peptide deformylase [Acinetobacter baumannii Naval-21]
gi|421801872|ref|ZP_16237827.1| peptide deformylase [Acinetobacter baumannii Canada BC1]
gi|421805266|ref|ZP_16241155.1| peptide deformylase [Acinetobacter baumannii WC-A-694]
gi|421810049|ref|ZP_16245875.1| peptide deformylase [Acinetobacter baumannii OIFC035]
gi|424054069|ref|ZP_17791599.1| peptide deformylase [Acinetobacter baumannii Ab11111]
gi|424061496|ref|ZP_17798985.1| peptide deformylase [Acinetobacter baumannii Ab33333]
gi|424065177|ref|ZP_17802661.1| peptide deformylase [Acinetobacter baumannii Ab44444]
gi|425750585|ref|ZP_18868546.1| peptide deformylase [Acinetobacter baumannii WC-348]
gi|425753517|ref|ZP_18871400.1| peptide deformylase [Acinetobacter baumannii Naval-113]
gi|445398280|ref|ZP_21429572.1| peptide deformylase [Acinetobacter baumannii Naval-57]
gi|445444131|ref|ZP_21442852.1| peptide deformylase [Acinetobacter baumannii WC-A-92]
gi|445459468|ref|ZP_21447574.1| peptide deformylase [Acinetobacter baumannii OIFC047]
gi|445464604|ref|ZP_21449656.1| peptide deformylase [Acinetobacter baumannii OIFC338]
gi|445482999|ref|ZP_21456337.1| peptide deformylase [Acinetobacter baumannii Naval-78]
gi|445491578|ref|ZP_21459809.1| peptide deformylase [Acinetobacter baumannii AA-014]
gi|169150560|emb|CAM88469.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
binds Zn(II)) [Acinetobacter baumannii AYE]
gi|183208104|gb|ACC55502.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii ACICU]
gi|193076056|gb|ABO10651.2| Zinc(II) binding peptide deformylase 1 [Acinetobacter baumannii
ATCC 17978]
gi|213054733|gb|ACJ39635.1| peptide deformylase [Acinetobacter baumannii AB0057]
gi|213986809|gb|ACJ57108.1| peptide deformylase [Acinetobacter baumannii AB307-0294]
gi|260408749|gb|EEX02053.1| peptide deformylase [Acinetobacter baumannii ATCC 19606 = CIP
70.34]
gi|322506378|gb|ADX01832.1| Peptide deformylase 1 [Acinetobacter baumannii 1656-2]
gi|323516246|gb|ADX90627.1| peptide deformylase [Acinetobacter baumannii TCDC-AB0715]
gi|332729133|gb|EGJ60480.1| peptide deformylase [Acinetobacter baumannii 6013150]
gi|332732799|gb|EGJ64015.1| peptide deformylase [Acinetobacter baumannii 6013113]
gi|332736217|gb|EGJ67232.1| peptide deformylase [Acinetobacter baumannii 6014059]
gi|333366104|gb|EGK48118.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii AB210]
gi|342224268|gb|EGT89311.1| peptide deformylase [Acinetobacter baumannii ABNIH2]
gi|342228546|gb|EGT93431.1| peptide deformylase [Acinetobacter baumannii ABNIH1]
gi|342234843|gb|EGT99476.1| peptide deformylase [Acinetobacter baumannii ABNIH4]
gi|342236116|gb|EGU00659.1| peptide deformylase [Acinetobacter baumannii ABNIH3]
gi|347591932|gb|AEP04653.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
binds Zn(II)) [Acinetobacter baumannii MDR-ZJ06]
gi|385880095|gb|AFI97190.1| peptide deformylase [Acinetobacter baumannii MDR-TJ]
gi|395525110|gb|EJG13199.1| peptide deformylase [Acinetobacter baumannii OIFC137]
gi|395551389|gb|EJG17398.1| peptide deformylase [Acinetobacter baumannii OIFC189]
gi|395552439|gb|EJG18447.1| peptide deformylase [Acinetobacter baumannii OIFC143]
gi|395564561|gb|EJG26212.1| peptide deformylase [Acinetobacter baumannii OIFC109]
gi|395569406|gb|EJG30068.1| peptide deformylase [Acinetobacter baumannii Naval-17]
gi|398328488|gb|EJN44612.1| peptide deformylase [Acinetobacter baumannii AC12]
gi|400205588|gb|EJO36568.1| peptide deformylase [Acinetobacter baumannii Canada BC-5]
gi|400210414|gb|EJO41383.1| peptide deformylase [Acinetobacter baumannii IS-123]
gi|400383985|gb|EJP42663.1| peptide deformylase [Acinetobacter baumannii OIFC032]
gi|400388496|gb|EJP51568.1| peptide deformylase [Acinetobacter baumannii Naval-18]
gi|400389883|gb|EJP56930.1| peptide deformylase [Acinetobacter baumannii Naval-81]
gi|404558529|gb|EKA63811.1| peptide deformylase [Acinetobacter baumannii WC-692]
gi|404558935|gb|EKA64208.1| peptide deformylase [Acinetobacter baumannii IS-143]
gi|404565026|gb|EKA70200.1| peptide deformylase [Acinetobacter baumannii IS-116]
gi|404569150|gb|EKA74244.1| peptide deformylase [Acinetobacter baumannii IS-58]
gi|404666373|gb|EKB34320.1| peptide deformylase [Acinetobacter baumannii Ab33333]
gi|404666624|gb|EKB34555.1| peptide deformylase [Acinetobacter baumannii Ab11111]
gi|404672627|gb|EKB40442.1| peptide deformylase [Acinetobacter baumannii Ab44444]
gi|407195638|gb|EKE66767.1| peptide deformylase [Acinetobacter baumannii ZWS1219]
gi|407195941|gb|EKE67062.1| peptide deformylase [Acinetobacter baumannii ZWS1122]
gi|407899658|gb|AFU36489.1| peptide deformylase [Acinetobacter baumannii TYTH-1]
gi|408503025|gb|EKK04802.1| peptide deformylase [Acinetobacter baumannii Naval-72]
gi|408509873|gb|EKK11540.1| peptide deformylase [Acinetobacter baumannii OIFC0162]
gi|408513813|gb|EKK15426.1| peptide deformylase [Acinetobacter baumannii IS-235]
gi|408517412|gb|EKK18955.1| peptide deformylase [Acinetobacter baumannii IS-251]
gi|408692753|gb|EKL38367.1| peptide deformylase [Acinetobacter baumannii OIFC180]
gi|408694968|gb|EKL40528.1| peptide deformylase [Acinetobacter baumannii OIFC074]
gi|408701606|gb|EKL47031.1| peptide deformylase [Acinetobacter baumannii OIFC098]
gi|408706871|gb|EKL52168.1| peptide deformylase [Acinetobacter baumannii Naval-13]
gi|408711476|gb|EKL56683.1| peptide deformylase [Acinetobacter baumannii Naval-83]
gi|408713452|gb|EKL58619.1| peptide deformylase [Acinetobacter baumannii OIFC110]
gi|409987782|gb|EKO43959.1| peptide deformylase [Acinetobacter baumannii AC30]
gi|410380947|gb|EKP33523.1| peptide deformylase [Acinetobacter baumannii OIFC099]
gi|410387563|gb|EKP40008.1| peptide deformylase [Acinetobacter baumannii OIFC087]
gi|410387821|gb|EKP40262.1| peptide deformylase [Acinetobacter baumannii OIFC065]
gi|410391693|gb|EKP44059.1| peptide deformylase [Acinetobacter baumannii OIFC111]
gi|410394058|gb|EKP46397.1| peptide deformylase [Acinetobacter baumannii Naval-21]
gi|410396120|gb|EKP48404.1| peptide deformylase [Acinetobacter baumannii Naval-2]
gi|410403219|gb|EKP55317.1| peptide deformylase [Acinetobacter baumannii Naval-82]
gi|410404686|gb|EKP56748.1| peptide deformylase [Acinetobacter baumannii Canada BC1]
gi|410409079|gb|EKP61013.1| peptide deformylase [Acinetobacter baumannii WC-A-694]
gi|410413394|gb|EKP65221.1| peptide deformylase [Acinetobacter baumannii OIFC035]
gi|425485763|gb|EKU52144.1| peptide deformylase [Acinetobacter baumannii WC-348]
gi|425497840|gb|EKU63930.1| peptide deformylase [Acinetobacter baumannii Naval-113]
gi|444762080|gb|ELW86452.1| peptide deformylase [Acinetobacter baumannii WC-A-92]
gi|444764116|gb|ELW88439.1| peptide deformylase [Acinetobacter baumannii AA-014]
gi|444768939|gb|ELW93139.1| peptide deformylase [Acinetobacter baumannii Naval-78]
gi|444773911|gb|ELW98001.1| peptide deformylase [Acinetobacter baumannii OIFC047]
gi|444779492|gb|ELX03475.1| peptide deformylase [Acinetobacter baumannii OIFC338]
gi|444783785|gb|ELX07623.1| peptide deformylase [Acinetobacter baumannii Naval-57]
gi|452949984|gb|EME55449.1| peptide deformylase [Acinetobacter baumannii MSP4-16]
Length = 176
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++QL+V + + E +V +NP+V + + PYEEGC
Sbjct: 35 MFETMYAAPGIGLAASQVDRHIQLIVMD--LSESKDEPMVFINPKVTPLTEETQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P I+ V+RP VKI+A ++ G F + L A QHE DHL
Sbjct: 93 LSVPQIYDKVDRPSRVKIEAINLEGQAFEIEADGLLAVCIQHEMDHL 139
>gi|443477595|ref|ZP_21067430.1| peptide deformylase [Pseudanabaena biceps PCC 7429]
gi|443017242|gb|ELS31726.1| peptide deformylase [Pseudanabaena biceps PCC 7429]
Length = 188
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 62/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGIN QL+V + + +V++NP + +I EEGC
Sbjct: 49 MLQTMYSNDGIGLAAPQVGINKQLLVIDIELKDESKPALVMINPEIKSSGGDLITGEEGC 108
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + DV RP+ V++ RD +G + L ARV QHE DHL
Sbjct: 109 LSIPEVFLDVVRPDRVEVSYRDEDGRPQHMIAEGLLARVIQHEMDHL 155
>gi|119952868|ref|YP_945077.1| peptide deformylase [Borrelia turicatae 91E135]
gi|119861639|gb|AAX17407.1| peptide deformylase [Borrelia turicatae 91E135]
Length = 165
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 71/108 (65%), Gaps = 3/108 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M +G+GL+A QVG+++ + V V E + ++ +NP + + S +++ Y+EGC
Sbjct: 32 MVNLMDAKNGVGLAASQVGLDLSIFV---VRENAMSKPLIFINPLITETSFELVLYKEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG++ D+ RP+S+ ++A D NG F + S L AR+ QHE DHL+
Sbjct: 89 LSIPGVYYDLLRPKSIIVEAYDENGEFFKIESSGLLARIVQHEMDHLK 136
>gi|406980382|gb|EKE01992.1| hypothetical protein ACD_21C00010G0003 [uncultured bacterium]
Length = 170
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 64/109 (58%), Gaps = 3/109 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGE-GEEIVLVNPRVNKYSNKMIPYEEG 59
M + M +GIGL+APQVGIN+ L V + GE E GE +VL NP + S E+G
Sbjct: 54 MIETMIHNNGIGLAAPQVGINLNLFVIS--GEATEKGEHLVLCNPTITFQSATTHIMEQG 111
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
CLS P + DV RPE +++ A ++G + L A VFQHE DHL+
Sbjct: 112 CLSCPTLFGDVRRPEKIRVKAYTLDGKKHVFKAKGLLAVVFQHEIDHLR 160
>gi|365175177|ref|ZP_09362614.1| peptide deformylase [Synergistes sp. 3_1_syn1]
gi|363613516|gb|EHL65027.1| peptide deformylase [Synergistes sp. 3_1_syn1]
Length = 163
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 66/107 (61%), Gaps = 6/107 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY +DGIGL+APQVG+ +L+V + GE+ VLVNP V + + + EEGC
Sbjct: 35 MFETMYASDGIGLAAPQVGVTKKLVVID-----YHGEKFVLVNPEVIE-AEGSVTNEEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFPGI+ V PE + + +D GA +SL A VF HE DHL
Sbjct: 89 LSFPGIYEKVTSPEKLTVVYQDETGAPRRLSLDGFTACVFSHEIDHL 135
>gi|317967982|ref|ZP_07969372.1| peptide deformylase [Synechococcus sp. CB0205]
Length = 200
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 59/107 (55%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQ+G+N QL+V + E +VL+NP + + YEEGC
Sbjct: 61 MLVSMYAAKGIGLAAPQIGVNQQLLVIDLELEDPSSPPLVLINPEITSVGGGLCTYEEGC 120
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV RP V + RD G + L AR QHE DHL
Sbjct: 121 LSIPGVYLDVVRPSVVDVSYRDAFGRPKRMKADGLMARCIQHEMDHL 167
>gi|385810728|ref|YP_005847124.1| N-formylmethionyl-tRNA deformylase [Ignavibacterium album JCM
16511]
gi|383802776|gb|AFH49856.1| N-formylmethionyl-tRNA deformylase [Ignavibacterium album JCM
16511]
Length = 188
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 67/110 (60%), Gaps = 2/110 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMV--FNPVGERGEGEEIVLVNPRVNKYSNKMIPYEE 58
MF+ M +GIGL+A Q+G+N Q+ V +PV + + I ++NP++ S++ +EE
Sbjct: 35 MFETMRNANGIGLAANQIGVNRQIFVVDISPVEGYEKYKPIAMINPKIISKSDETSSFEE 94
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
GCLS P + AD+ RP+ ++I D + DL ARV QHEFDHLQ
Sbjct: 95 GCLSIPDLRADIIRPKGIQISFLDTKMKEHLIEADDLLARVIQHEFDHLQ 144
>gi|254453655|ref|ZP_05067092.1| peptide deformylase [Octadecabacter arcticus 238]
gi|198268061|gb|EDY92331.1| peptide deformylase [Octadecabacter arcticus 238]
Length = 159
Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQ+GI +++V + + + E + +VL+NPRV S++ Y+EG
Sbjct: 19 MLETMYDAPGIGLAAPQLGIMQRMLVMDCIKDDMETPQPMVLINPRVIAASSETNIYDEG 78
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P +A+VER VK++ D+NG SDL A QHE DHL
Sbjct: 79 CLSIPEQYAEVERSAVVKVEWMDLNGKTQQDEFSDLWATCVQHEIDHL 126
>gi|58040267|ref|YP_192231.1| N-formylmethionylaminoacyl-tRNA deformylase [Gluconobacter oxydans
621H]
gi|58002681|gb|AAW61575.1| N-formylmethionylaminoacyl-tRNA deformylase [Gluconobacter oxydans
621H]
Length = 184
Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 64/107 (59%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MYK GIGL+APQVG+ ++ + + E E ++L+NP + S+++ EEGC
Sbjct: 48 MFSAMYKAPGIGLAAPQVGLGMRFALVDVAEEDAPREPMLLINPEIISDSDQLAAREEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+V RPES+++ R++ G S L A QHE DHL
Sbjct: 108 LSLPNQYAEVVRPESIRVRYRNLAGETIERDASGLLATCIQHEMDHL 154
>gi|406036448|ref|ZP_11043812.1| peptide deformylase [Acinetobacter parvus DSM 16617 = CIP 108168]
Length = 176
Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 66/107 (61%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ GIGL+A QV ++QL+V + E+ + +V +NP+V + + PYEEGC
Sbjct: 35 MLETMYEAPGIGLAATQVDHHIQLIVMDLSEEKNQP--MVFINPKVTPLTQETQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P I+ V RP VKI+A +++G F + +L A QHE DHL
Sbjct: 93 LSVPQIYDKVARPSRVKIEAINLDGQAFELEADELLAVCIQHEMDHL 139
>gi|347755204|ref|YP_004862768.1| peptide deformylase [Candidatus Chloracidobacterium thermophilum B]
gi|347587722|gb|AEP12252.1| peptide deformylase [Candidatus Chloracidobacterium thermophilum B]
Length = 167
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 66/108 (61%), Gaps = 3/108 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY G+GL+APQVG++ +L V + E+ + V +NP + + + +EGC
Sbjct: 34 MFETMYDAPGVGLAAPQVGVSRRLFVMDCSKEKNR--QFVFINPEILQTEGTQVG-DEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LSFPGI+ +VERP V + A+++ G F DL AR HE+DHLQ
Sbjct: 91 LSFPGIYFEVERPARVIVRAQNVKGEWFEGDFLDLEARCVLHEYDHLQ 138
>gi|383786373|ref|YP_005470942.1| peptide deformylase [Fervidobacterium pennivorans DSM 9078]
gi|383109220|gb|AFG34823.1| peptide deformylase [Fervidobacterium pennivorans DSM 9078]
Length = 169
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 68/104 (65%), Gaps = 5/104 (4%)
Query: 4 VMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSF 63
MY DG+GL+APQVGI+++ + G+G ++V VNP++ ++SN+ EEGCLS
Sbjct: 34 TMYTEDGVGLAAPQVGISLRFFAMDD----GKGFKVV-VNPQILEHSNEKEVGEEGCLSL 88
Query: 64 PGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
PG+ ADVER + +++ + NG L D AR+FQHE+DHL
Sbjct: 89 PGVFADVERYKWIRVKYQTENGDWKEELLEDYSARIFQHEYDHL 132
>gi|126640269|ref|YP_001083253.1| Zinc(II) binding peptide deformylase 1 [Acinetobacter baumannii
ATCC 17978]
Length = 142
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++QL+V + + E +V +NP+V + + PYEEGC
Sbjct: 1 MFETMYAAPGIGLAASQVDRHIQLIVMD--LSESKDEPMVFINPKVTPLTEETQPYEEGC 58
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P I+ V+RP VKI+A ++ G F + L A QHE DHL
Sbjct: 59 LSVPQIYDKVDRPSRVKIEAINLEGQAFEIEADGLLAVCIQHEMDHL 105
>gi|167031105|ref|YP_001666336.1| peptide deformylase [Pseudomonas putida GB-1]
gi|166857593|gb|ABY96000.1| peptide deformylase [Pseudomonas putida GB-1]
Length = 168
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV +++Q++V + +R E V +NP V + ++ M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHLQVVVMDLSEDRSEPR--VFINPTVEELTHDMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP V++ A+D +G F + L A QHEFDHL
Sbjct: 93 LSVPGFYENVDRPLRVRVKAQDRDGKPFELECEGLLAVCVQHEFDHL 139
>gi|406917422|gb|EKD56220.1| Peptide deformylase [uncultured bacterium]
Length = 165
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 69/119 (57%), Gaps = 12/119 (10%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMV--FNPVGERGEGEEI----------VLVNPRVNK 48
M + ++ G+GL+APQ+G N++L+V F+PV + E +LVNP++
Sbjct: 34 MVETLHANKGVGLAAPQIGKNIKLIVIEFDPVKYYNKEELTKKSNKPIPLTILVNPKIIS 93
Query: 49 YSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
YSN EGCLS P + +V R + +KI ++DI+G R + SD ARV QHE DHL
Sbjct: 94 YSNDKTTEIEGCLSCPEVEVEVIRSKKIKIISQDISGKRIKIKASDFYARVLQHEIDHL 152
>gi|225549344|ref|ZP_03770317.1| peptide deformylase [Borrelia burgdorferi 94a]
gi|365992282|ref|NP_212199.2| peptide deformylase [Borrelia burgdorferi B31]
gi|384872328|sp|O51092.2|DEF_BORBU RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|225370202|gb|EEG99642.1| peptide deformylase [Borrelia burgdorferi 94a]
gi|356609280|gb|AAC66445.2| peptide deformylase [Borrelia burgdorferi B31]
Length = 165
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M + G+GL+APQVG+++ L V V E +V +NP + + S + Y+EGC
Sbjct: 32 MIELMDISGGVGLAAPQVGLDLALFV---VRENKMARPLVFINPSIIETSYEFSSYKEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ D+ RP++V I+ D NG F++ SD AR+ QHE DHL
Sbjct: 89 LSIPGVYYDLMRPKAVVINFHDENGKSFTIENSDFLARIIQHEMDHL 135
>gi|398349954|ref|YP_006395418.1| peptide deformylase Def [Sinorhizobium fredii USDA 257]
gi|390125280|gb|AFL48661.1| peptide deformylase Def [Sinorhizobium fredii USDA 257]
Length = 174
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 65/107 (60%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +L+V + E E + +V +NP++ + S + YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRLLVLDVSKEGEEKKPLVFINPKIVRSSEERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP ++ ++ RD +G SV L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPAAITVEFRDRDGKEQSVEADGLLATCLQHEIDHL 141
>gi|374316850|ref|YP_005063278.1| peptide deformylase [Sphaerochaeta pleomorpha str. Grapes]
gi|359352494|gb|AEV30268.1| peptide deformylase [Sphaerochaeta pleomorpha str. Grapes]
Length = 168
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 64/107 (59%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ + + DG+GL+APQ+G++ +L V N E+ VNP++ + S + EEGC
Sbjct: 33 MFETLDEADGVGLAAPQIGVSSRLFVINIRN----VEKRAFVNPQIIETSIETSSAEEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG+ DVERP V + A+DI G F + L AR QHE DHL
Sbjct: 89 LSIPGVWHDVERPAQVTVQAQDIEGKAFVIKAEGLLARAIQHENDHL 135
>gi|221217366|ref|ZP_03588837.1| peptide deformylase [Borrelia burgdorferi 72a]
gi|224533957|ref|ZP_03674542.1| peptide deformylase [Borrelia burgdorferi CA-11.2a]
gi|225549696|ref|ZP_03770661.1| peptide deformylase [Borrelia burgdorferi 118a]
gi|221192644|gb|EEE18860.1| peptide deformylase [Borrelia burgdorferi 72a]
gi|224512960|gb|EEF83326.1| peptide deformylase [Borrelia burgdorferi CA-11.2a]
gi|225369656|gb|EEG99104.1| peptide deformylase [Borrelia burgdorferi 118a]
Length = 165
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M + G+GL+APQVG+++ L V V E +V +NP + + S + Y+EGC
Sbjct: 32 MIELMDISGGVGLAAPQVGLDLALFV---VRENKMARPLVFINPSIIETSYEFSSYKEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ D+ RP++V I+ D NG F++ SD AR+ QHE DHL
Sbjct: 89 LSIPGVYYDLMRPKAVVINFHDENGKSFTIENSDFLARIIQHEMDHL 135
>gi|343127387|ref|YP_004777318.1| peptide deformylase [Borrelia bissettii DN127]
gi|342222075|gb|AEL18253.1| peptide deformylase [Borrelia bissettii DN127]
Length = 165
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 70/108 (64%), Gaps = 3/108 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M + G+GL+APQVG+++ L V V E + ++ +NP + + S ++ Y+EGC
Sbjct: 32 MIELMDISGGVGLAAPQVGLDLSLFV---VRENKMAKPLIFINPSIIETSYELSSYKEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG++ DV RP++V ++ D NG F++ S+ AR+ QHE DHL
Sbjct: 89 LSIPGVYYDVMRPKAVVVNFHDENGKSFTIENSNFLARIIQHEMDHLN 136
>gi|326783953|ref|YP_004324347.1| RIIA-RIIB membrane-associated protein [Synechococcus phage S-SSM7]
gi|310003965|gb|ADO98360.1| RIIA-RIIB membrane-associated protein [Synechococcus phage S-SSM7]
Length = 128
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 68/108 (62%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + M+ +DGIGL+APQVGIN +++V + E ++VNP++ S + + ++EGC
Sbjct: 8 MCEAMWASDGIGLAAPQVGINKRVIVVDETTEEHGKYAHLMVNPKITWKSEEKVLFDEGC 67
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS P + +V RP+S+K+ ++ +G L L ARV QHE DHL+
Sbjct: 68 LSVPDQNGEVLRPKSIKVTFQNKDGKYKKWKLDGLAARVVQHEIDHLE 115
>gi|443312301|ref|ZP_21041919.1| peptide deformylase [Synechocystis sp. PCC 7509]
gi|442777539|gb|ELR87814.1| peptide deformylase [Synechocystis sp. PCC 7509]
Length = 192
Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 64/107 (59%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQV + QL+V + + ++L+NP + S+++ +EGC
Sbjct: 48 MLQTMYTADGIGLAAPQVAVQKQLIVIDCEPDNPANPPLILINPTIKHLSSELCIAQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P ++ DV RP+ V+I +D G ++ ++L +R QHE DHL
Sbjct: 108 LSIPNVYMDVTRPQMVEIAYKDEQGRPQTLRATELLSRCIQHEIDHL 154
>gi|386853473|ref|YP_006202758.1| Peptide deformylase [Borrelia garinii BgVir]
gi|365193507|gb|AEW68405.1| Def [Borrelia garinii BgVir]
Length = 186
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 68/108 (62%), Gaps = 3/108 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M + G+GL+APQVG+++ L V V E +V +NP + + S ++ Y+EGC
Sbjct: 53 MIELMDISGGVGLAAPQVGLDLSLFV---VRENRMARPLVFINPSITETSYELNSYKEGC 109
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG++ D+ RP+ + ++ D NG F++ SD AR+ QHE DHL
Sbjct: 110 LSIPGVYYDLMRPKGIVVNFYDENGKSFTIENSDFLARIIQHEMDHLN 157
>gi|349686487|ref|ZP_08897629.1| N-formylmethionylaminoacyl-tRNA deformylase [Gluconacetobacter
oboediens 174Bp2]
Length = 180
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 68/109 (62%), Gaps = 2/109 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
MF MY+ GIGL+APQVG+ ++ + + V ++ E +VL+NP V ++ M EEG
Sbjct: 45 MFAAMYQAPGIGLAAPQVGLGMRFAIVD-VADKDEARNPLVLINPEVIAETDSMAVREEG 103
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
CLS P +A+V RPE+V++ +D++G + DL A QHE DHL+
Sbjct: 104 CLSLPNQYAEVIRPEAVRVRYQDMDGKAQEIEADDLLATCLQHEIDHLE 152
>gi|340751504|ref|ZP_08688316.1| polypeptide deformylase [Fusobacterium mortiferum ATCC 9817]
gi|229420472|gb|EEO35519.1| polypeptide deformylase [Fusobacterium mortiferum ATCC 9817]
Length = 169
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 69/107 (64%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + M++ G+GL+APQVGI+ ++ V + +G+G ++NP + ++K++ +EEGC
Sbjct: 34 MVETMHEAKGVGLAAPQVGISKRMFVCD----QGDGVVRKVINPIITPMTDKLMDFEEGC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PGI+ V+RPE +KID + G + S + A + QHEFDHL
Sbjct: 90 LSVPGIYKKVQRPEKIKIDYLNEKGEKVSEEVEGFLAIIMQHEFDHL 136
>gi|415886519|ref|ZP_11548299.1| peptide deformylase [Bacillus methanolicus MGA3]
gi|387587206|gb|EIJ79529.1| peptide deformylase [Bacillus methanolicus MGA3]
Length = 161
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 65/108 (60%), Gaps = 4/108 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M + DG+GL+APQ+G+N Q+ + + E G I L+NP + + S + EGC
Sbjct: 35 MYDTMIEYDGVGLAAPQIGVNKQIAIVDIDDETGP---IELINPEIMETSGEQ-SGPEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LSFPG++ +V RP VK+ A+D G F + D AR QHE DHL
Sbjct: 91 LSFPGLYGEVTRPYFVKVKAQDRKGKSFIIEAEDFLARAIQHEIDHLH 138
>gi|427702781|ref|YP_007046003.1| peptide deformylase [Cyanobium gracile PCC 6307]
gi|427345949|gb|AFY28662.1| peptide deformylase [Cyanobium gracile PCC 6307]
Length = 201
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 59/107 (55%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVG++ QL+V + E +VL+NP + YEEGC
Sbjct: 62 MLRSMYTAKGIGLAAPQVGVHRQLLVIDLDLEEAATPPLVLINPEITAAGASFNTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV RP V++ RD G + L AR QHE DHL
Sbjct: 122 LSIPGVYLDVVRPSVVEVSFRDETGRPRRLKADGLLARCIQHEMDHL 168
>gi|237749120|ref|ZP_04579600.1| peptide deformylase [Oxalobacter formigenes OXCC13]
gi|229380482|gb|EEO30573.1| peptide deformylase [Oxalobacter formigenes OXCC13]
Length = 208
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 68/113 (60%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY+ G+GL+APQ+ ++ QL+V + ++ E V +NP++ K S + +EEGC
Sbjct: 64 MAQTMYEAPGVGLAAPQINVHKQLIVIDVSEQKNELR--VFINPQIVKASEEKAIFEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PGI+ ++ERP V + A D NG F + L A QHE DHL+ +FV
Sbjct: 122 LSLPGIYDEIERPAKVTVRALDANGKEFELEAEGLLAVCVQHEIDHLKGSIFV 174
>gi|194477103|ref|YP_002049282.1| peptide deformylase [Paulinella chromatophora]
gi|171192110|gb|ACB43072.1| peptide deformylase [Paulinella chromatophora]
Length = 201
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 61/108 (56%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVGIN QL+V + E I+L+NP + + + YEEGC
Sbjct: 62 MLRSMYAAKGIGLAAPQVGINKQLIVIDIDLENSTTPPIILINPEIIASNASLNTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG++ DV RP +++ RD + L AR QHE DHL+
Sbjct: 122 LSIPGVYLDVVRPSIIEVSFRDEQDFPRCLKTDGLLARCIQHEMDHLK 169
>gi|322434765|ref|YP_004216977.1| peptide deformylase [Granulicella tundricola MP5ACTX9]
gi|321162492|gb|ADW68197.1| peptide deformylase [Granulicella tundricola MP5ACTX9]
Length = 188
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+APQ+GI+ ++ V + ++ + + L+NP + + K + EEGC
Sbjct: 53 MFESMYEAQGIGLAAPQIGISERITVIDVSFKKNPKDRLALINPVIIEAEGKQVE-EEGC 111
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P I V R VK+ A+D+ G F V +L AR QHE DHL
Sbjct: 112 LSLPDIREKVSRAGWVKVKAQDVTGTWFEVEGDELLARALQHEIDHL 158
>gi|193213195|ref|YP_001999148.1| peptide deformylase [Chlorobaculum parvum NCIB 8327]
gi|238692654|sp|B3QPU5.1|DEF_CHLP8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|193086672|gb|ACF11948.1| peptide deformylase [Chlorobaculum parvum NCIB 8327]
Length = 187
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 3/109 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMV--FNPVGERGEGEEIVLVNPRVNKYSNKMIPYEE 58
MFD MYK GIGL+APQVG +++L+V + + E + + +V++NPR+ + + EE
Sbjct: 34 MFDSMYKAPGIGLAAPQVGHSLRLLVVDISTIKEYADYKPMVVINPRIVSVAGRNA-MEE 92
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
GCLS PG+ DV RP + + RD + SD+ ARV QHE DHL
Sbjct: 93 GCLSVPGVAGDVVRPSKITLHYRDEKFEEHTEEFSDMMARVLQHEIDHL 141
>gi|383767493|ref|YP_005446475.1| peptide deformylase [Phycisphaera mikurensis NBRC 102666]
gi|381387762|dbj|BAM04578.1| peptide deformylase [Phycisphaera mikurensis NBRC 102666]
Length = 172
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M+ G+GL+APQVG+ +L V N G+ EG++ V NP ++ S EEGC
Sbjct: 39 MIELMHAAPGVGLAAPQVGLPWRLFVANWSGD--EGDDHVFFNPVLSDASAATAAKEEGC 96
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + +V RP V I A ++G F + S PARV+QHE DHL
Sbjct: 97 LSLPEVQVEVTRPREVTIRAVGLDGEAFQRTASGFPARVWQHECDHL 143
>gi|78183988|ref|YP_376423.1| peptide deformylase [Synechococcus sp. CC9902]
gi|123743565|sp|Q3AZU8.1|DEF_SYNS9 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|78168282|gb|ABB25379.1| peptide deformylase [Synechococcus sp. CC9902]
Length = 201
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 60/107 (56%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQV + QL+V + E +VL+NP + S + YEEGC
Sbjct: 62 MLRSMYTAKGIGLAAPQVAVYQQLLVIDLDLENAATPPLVLINPEITAASAGLDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV RP ++++ RD G + L AR QHE DHL
Sbjct: 122 LSIPGVYLDVVRPTAIELSYRDEMGRPRKMKADGLMARCIQHEMDHL 168
>gi|225181326|ref|ZP_03734770.1| peptide deformylase [Dethiobacter alkaliphilus AHT 1]
gi|225167907|gb|EEG76714.1| peptide deformylase [Dethiobacter alkaliphilus AHT 1]
Length = 154
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 65/107 (60%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +GIGL+APQVGI+ +++V + E G + L+NP + K E GC
Sbjct: 35 MVETMYDAEGIGLAAPQVGISKRIIVIDVQDETGV---LKLINPEIISGEGKETSVE-GC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFPG+ +VER ESV + A+D +G + S L AR FQHE DHL
Sbjct: 91 LSFPGVAGEVERDESVTVRAQDPDGNTVEICASGLLARAFQHEIDHL 137
>gi|116071395|ref|ZP_01468664.1| peptide deformylase [Synechococcus sp. BL107]
gi|116066800|gb|EAU72557.1| peptide deformylase [Synechococcus sp. BL107]
Length = 201
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 60/107 (56%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQV + QL+V + E +VL+NP + S + YEEGC
Sbjct: 62 MLRSMYTAKGIGLAAPQVAVYQQLLVIDLDLENAATPPLVLINPEITAASAGLDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV RP ++++ RD G + L AR QHE DHL
Sbjct: 122 LSIPGVYLDVVRPTAIELSYRDEMGRPRKMKADGLMARCIQHEMDHL 168
>gi|423720643|ref|ZP_17694825.1| peptide deformylase [Geobacillus thermoglucosidans TNO-09.020]
gi|383365996|gb|EID43287.1| peptide deformylase [Geobacillus thermoglucosidans TNO-09.020]
Length = 157
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 65/107 (60%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M DG+GL+APQVGI Q+ V + E G I L+NPR+ + + I EGC
Sbjct: 35 MYDTMIDADGVGLAAPQVGIAKQIAVVDAGDEHGR---IELINPRIMEARGEQIG-PEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFPG+ A+V+R VK+ A+D G F++ + AR QHE DHL
Sbjct: 91 LSFPGLFAEVKRANYVKVRAQDRRGRPFTLKATGFLARALQHEIDHL 137
>gi|428220446|ref|YP_007104616.1| peptide deformylase [Synechococcus sp. PCC 7502]
gi|427993786|gb|AFY72481.1| peptide deformylase [Synechococcus sp. PCC 7502]
Length = 189
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 64/107 (59%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +GIGL+APQVGI+ Q++V + + ++L+NP + +I EEGC
Sbjct: 49 MLQTMYSDNGIGLAAPQVGIHKQIIVVDCEPDNESAPPLILINPELKSSGGDIITGEEGC 108
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + DV+RP+ + ++ RD G +++ + ARV QHE DHL
Sbjct: 109 LSVPDVFLDVQRPDQITVNFRDEEGKPKTLTTDGILARVIQHELDHL 155
>gi|224531760|ref|ZP_03672392.1| peptide deformylase [Borrelia valaisiana VS116]
gi|224511225|gb|EEF81631.1| peptide deformylase [Borrelia valaisiana VS116]
Length = 165
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 67/108 (62%), Gaps = 3/108 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M + G+GL+APQVG+++ L V V E +V +NP + + S ++ Y EGC
Sbjct: 32 MIELMDISGGVGLAAPQVGLDLSLFV---VRENKMARPLVFINPLITETSYELNSYREGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG++ D+ RP+++ + D NG F++ SD AR+ QHE DHL
Sbjct: 89 LSIPGVYYDLMRPKAIVVSFYDENGKSFTIENSDFLARIIQHEMDHLN 136
>gi|320105840|ref|YP_004181430.1| peptide deformylase [Terriglobus saanensis SP1PR4]
gi|319924361|gb|ADV81436.1| peptide deformylase [Terriglobus saanensis SP1PR4]
Length = 169
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 63/107 (58%), Gaps = 1/107 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY +GIGL+APQ+ I+ ++ + + ++ E+IVL+NP V K EEGC
Sbjct: 34 MFASMYAAEGIGLAAPQINISRRITIIDLSFQKRPEEKIVLINPEVIAVEGKQ-HEEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P I V R VK+ A+D G F V ++L AR FQHE DHL
Sbjct: 93 LSLPDIREKVTRAAWVKVRAQDATGKHFEVEGTELLARAFQHEIDHL 139
>gi|114327357|ref|YP_744513.1| peptide deformylase [Granulibacter bethesdensis CGDNIH1]
gi|114315531|gb|ABI61591.1| peptide deformylase [Granulibacter bethesdensis CGDNIH1]
Length = 205
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 63/107 (58%), Gaps = 1/107 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MYK GIGL+APQ+ ++L V + V + +VL+NP + S +M EEGC
Sbjct: 69 MFATMYKAPGIGLAAPQIDSLLRLAVVD-VSPDDQKAPLVLINPDIIARSEEMATREEGC 127
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +ADV RP +K+ D++G+R + DL A QHE DHL
Sbjct: 128 LSLPNQYADVTRPARIKLRYEDLDGSRREMEADDLLATCIQHEIDHL 174
>gi|365856495|ref|ZP_09396512.1| peptide deformylase [Acetobacteraceae bacterium AT-5844]
gi|363718031|gb|EHM01387.1| peptide deformylase [Acetobacteraceae bacterium AT-5844]
Length = 177
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 65/107 (60%), Gaps = 1/107 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MYK GIGL+APQVG+ +++ V + + + + + +VL+NP + S ++ EEGC
Sbjct: 39 MLATMYKAPGIGLAAPQVGVMLRMAVVD-IQKDDKQDPMVLINPEIVAQSTELSTREEGC 97
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +ADV RP +K+ ++G+R + DL A QHE DHL
Sbjct: 98 LSLPNQYADVTRPARIKLRWTALDGSRKELEADDLLATCIQHELDHL 144
>gi|291278698|ref|YP_003495533.1| formylmethionine deformylase [Deferribacter desulfuricans SSM1]
gi|290753400|dbj|BAI79777.1| formylmethionine deformylase [Deferribacter desulfuricans SSM1]
Length = 172
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 65/107 (60%), Gaps = 1/107 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+APQVG+N +++V +P + + I ++NP + + ++I EEGC
Sbjct: 34 MVETMYAAPGLGLAAPQVGVNERILVIDPSAGEDKSKLIKIINPVIVEADGEVIE-EEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG +A+V R V + D++G + DL AR FQHE DHL
Sbjct: 93 LSIPGEYANVRRAAKVLVKGLDVDGKEVEIEAEDLLARAFQHEIDHL 139
>gi|453330526|dbj|GAC87272.1| N-formylmethionylaminoacyl-tRNA deformylase [Gluconobacter
thailandicus NBRC 3255]
Length = 223
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 62/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MYK GIGL+APQVG+ ++ + + E E +VL+NP + S +M EEGC
Sbjct: 87 MFSAMYKAPGIGLAAPQVGLGMRFALVDVAEEDAPREPMVLINPEIVTDSEQMAVREEGC 146
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+V RPES+++ R++ G L A QHE DHL
Sbjct: 147 LSLPNQYAEVIRPESIRVRYRNLAGEIIERDAEGLLATCIQHEMDHL 193
>gi|220903297|ref|YP_002478609.1| peptide deformylase [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219867596|gb|ACL47931.1| peptide deformylase [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 172
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ G+GL+APQVG N++++V +P ++ E VL+NP + ++I +EGC
Sbjct: 34 MLETMYEAPGVGLAAPQVGRNIRMLVMDPSAQKDERNPRVLINPVLTLSGEEIISEQEGC 93
Query: 61 LSFP-GIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P ADV+R V + A D++G L D A V QHE+DHL
Sbjct: 94 LSVPMNYRADVKRMSRVHLSATDLDGNAIEEDLEDFDAIVMQHEYDHL 141
>gi|408670697|ref|YP_006870768.1| peptide deformylase [Borrelia garinii NMJW1]
gi|407240519|gb|AFT83402.1| peptide deformylase [Borrelia garinii NMJW1]
Length = 172
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 68/108 (62%), Gaps = 3/108 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M + G+GL+APQVG+++ L V V E +V +NP + + S ++ Y+EGC
Sbjct: 39 MIELMDISGGVGLAAPQVGLDLSLFV---VRENRIARPLVFINPSITETSYELNSYKEGC 95
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG++ D+ RP+ + ++ D NG F++ SD AR+ QHE DHL
Sbjct: 96 LSIPGVYYDLMRPKGIVVNFYDENGKSFTIENSDFLARIIQHEMDHLN 143
>gi|365876377|ref|ZP_09415899.1| peptide deformylase [Elizabethkingia anophelis Ag1]
gi|442589683|ref|ZP_21008490.1| peptide deformylase [Elizabethkingia anophelis R26]
gi|365755989|gb|EHM97906.1| peptide deformylase [Elizabethkingia anophelis Ag1]
gi|442560571|gb|ELR77799.1| peptide deformylase [Elizabethkingia anophelis R26]
Length = 190
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 72/118 (61%), Gaps = 11/118 (9%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGERGEGEEI---------VLVNPRVNKY 49
MF+ MY+ GIGL+APQ+G++++L V + P+ E + +I V +N ++ +Y
Sbjct: 34 MFETMYQAHGIGLAAPQIGLDIRLFVIDVRPLAEDEDYLDIREELKDFKKVFINAKILEY 93
Query: 50 SNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
+ + EGCLS P + DV RPE++ ++ D N + + + SD+ ARV QHE+DH+
Sbjct: 94 EGEPWKFNEGCLSIPDVREDVSRPETITMEYYDENFVKHTETFSDIRARVIQHEYDHI 151
>gi|398847284|ref|ZP_10604208.1| peptide deformylase [Pseudomonas sp. GM84]
gi|398251732|gb|EJN36965.1| peptide deformylase [Pseudomonas sp. GM84]
Length = 168
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 67/107 (62%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ Q++V + +R E V +NP V + ++ M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKQVVVMDLSEDRSEPR--VFINPTVEELTHDMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP V++ A+D +G F + L A QHEFDHL
Sbjct: 93 LSVPGFYENVDRPLRVRVKAQDRDGKPFELECEGLLAVCVQHEFDHL 139
>gi|170719274|ref|YP_001746962.1| peptide deformylase [Pseudomonas putida W619]
gi|169757277|gb|ACA70593.1| peptide deformylase [Pseudomonas putida W619]
Length = 168
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 67/107 (62%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ Q++V + +R E V +NP V + ++ M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKQIVVMDLSEDRSEPR--VFINPSVEELTHDMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP V++ A+D +G F + L A QHEFDHL
Sbjct: 93 LSVPGFYENVDRPLRVRVKAQDRDGKPFELEAEGLLAVCVQHEFDHL 139
>gi|26986813|ref|NP_742238.1| peptide deformylase [Pseudomonas putida KT2440]
gi|148545341|ref|YP_001265443.1| peptide deformylase [Pseudomonas putida F1]
gi|386009734|ref|YP_005928011.1| hypothetical protein PPUBIRD1_0097 [Pseudomonas putida BIRD-1]
gi|395446391|ref|YP_006386644.1| peptide deformylase [Pseudomonas putida ND6]
gi|397693663|ref|YP_006531543.1| peptide deformylase 1 [Pseudomonas putida DOT-T1E]
gi|421523117|ref|ZP_15969748.1| peptide deformylase [Pseudomonas putida LS46]
gi|32363155|sp|Q88RR1.1|DEF1_PSEPK RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|24981409|gb|AAN65702.1|AE016196_13 polypeptide deformylase [Pseudomonas putida KT2440]
gi|148509399|gb|ABQ76259.1| peptide deformylase [Pseudomonas putida F1]
gi|313496440|gb|ADR57806.1| Def [Pseudomonas putida BIRD-1]
gi|388560388|gb|AFK69529.1| peptide deformylase [Pseudomonas putida ND6]
gi|397330393|gb|AFO46752.1| Peptide deformylase 1 [Pseudomonas putida DOT-T1E]
gi|402752938|gb|EJX13441.1| peptide deformylase [Pseudomonas putida LS46]
Length = 168
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 67/107 (62%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ Q++V + +R E V +NP V + ++ M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKQVVVMDLSEDRSEPR--VFINPSVEELTHDMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP V++ A+D +G F + L A QHEFDHL
Sbjct: 93 LSVPGFYENVDRPLRVRVKAQDRDGKPFELECEGLLAVCVQHEFDHL 139
>gi|88860597|ref|ZP_01135234.1| N-terminal methionine peptide deformylase [Pseudoalteromonas
tunicata D2]
gi|88817192|gb|EAR27010.1| N-terminal methionine peptide deformylase [Pseudoalteromonas
tunicata D2]
Length = 167
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 67/108 (62%), Gaps = 3/108 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ GIGL+A Q I+++++V + ++ + ++VL+NP + K I EEGC
Sbjct: 35 MFDTMYEESGIGLAATQANIHLRIVVIDVTEDKSD--QLVLINPEITKKDGSTIS-EEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS P +A V+R E+V + A +++G FS+ L A QHE DHLQ
Sbjct: 92 LSVPNSYAKVDRAETVTVKALNLDGQEFSLDADGLLAICIQHELDHLQ 139
>gi|72383267|ref|YP_292622.1| peptide deformylase [Prochlorococcus marinus str. NATL2A]
gi|123773734|sp|Q46HV9.1|DEF_PROMT RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|72003117|gb|AAZ58919.1| peptide deformylase [Prochlorococcus marinus str. NATL2A]
Length = 202
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 62/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY + GIGL+APQVGI +L+V + E +V +NP + S + YEEGC
Sbjct: 62 MLITMYSSKGIGLAAPQVGIQKRLLVIDLKFEDPNSPPMVFINPEIISSSATLDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ +V RP S+K+ RD G ++ L AR QHE DHL
Sbjct: 122 LSIPGVYLNVLRPSSIKLSYRDEMGRPKKMNADGLMARCIQHEIDHL 168
>gi|331007625|ref|ZP_08330767.1| Peptide deformylase [gamma proteobacterium IMCC1989]
gi|330418565|gb|EGG93089.1| Peptide deformylase [gamma proteobacterium IMCC1989]
Length = 166
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 66/107 (61%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV I+ Q++V + ++ E + V +NP + ++ Y+EGC
Sbjct: 35 MFETMYAAPGIGLAATQVNIHQQIIVMDLSEDKSEPQ--VFINPSITVQGEELDSYDEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + VERP+S+K++A D NG+ F + L A QHE DHL
Sbjct: 93 LSVPGFYESVERPKSIKVEAIDRNGSPFIIEPEGLLAVCIQHEIDHL 139
>gi|317059168|ref|ZP_07923653.1| polypeptide deformylase [Fusobacterium sp. 3_1_5R]
gi|313684844|gb|EFS21679.1| polypeptide deformylase [Fusobacterium sp. 3_1_5R]
Length = 173
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY TDG+GL+APQVGI++++ V + VG E + ++NP + + + I EEGC
Sbjct: 34 MLETMYATDGVGLAAPQVGISLRMFVCD-VGTPEESQVKKIINPIITPLTEENISVEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PGI+ V+R +KI ++ G + L PA V QHE+DHL+
Sbjct: 93 LSVPGIYRKVDRIAKIKISYQNEMGEKIEEILEGFPAIVVQHEYDHLE 140
>gi|407693961|ref|YP_006818749.1| peptide deformylase 1 [Alcanivorax dieselolei B5]
gi|407251299|gb|AFT68406.1| Peptide deformylase 1 [Alcanivorax dieselolei B5]
Length = 168
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ GIGL+A QV ++ +L+V + ER + +V +NP + + + PYEEGC
Sbjct: 35 MIETMYEASGIGLAATQVNVHQRLLVIDVSEERDQP--LVFINPEITPLTGDLAPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + VERP V I A D +G F + L A QHE DHL
Sbjct: 93 LSVPGFYEQVERPARVMIKALDRDGNPFEMEADGLLATCIQHEIDHL 139
>gi|347761822|ref|YP_004869383.1| N-formylmethionylaminoacyl-tRNA deformylase [Gluconacetobacter
xylinus NBRC 3288]
gi|347580792|dbj|BAK85013.1| N-formylmethionylaminoacyl-tRNA deformylase [Gluconacetobacter
xylinus NBRC 3288]
Length = 180
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 64/108 (59%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY+ GIGL+APQVG+ ++ + + + IVL+NP V ++ M EEGC
Sbjct: 45 MFSAMYQAPGIGLAAPQVGLGMRFAIVDVSDKDEPRNPIVLINPEVIAETDSMAAREEGC 104
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS P +A+V RPE+V++ +D+ G + DL A QHE DHL+
Sbjct: 105 LSLPNQYAEVIRPEAVRVRYQDMEGKVQELEADDLLATCLQHEIDHLE 152
>gi|315917642|ref|ZP_07913882.1| polypeptide deformylase [Fusobacterium gonidiaformans ATCC 25563]
gi|313691517|gb|EFS28352.1| polypeptide deformylase [Fusobacterium gonidiaformans ATCC 25563]
Length = 173
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY TDG+GL+APQVGI++++ V + VG E + ++NP + + + I EEGC
Sbjct: 34 MLETMYATDGVGLAAPQVGISLRMFVCD-VGTPEESQVKKIINPIITPLTEENISVEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PGI+ V+R +KI ++ G + L PA V QHE+DHL+
Sbjct: 93 LSVPGIYRKVDRIAKIKISYQNEMGEKIEEILEGFPAIVVQHEYDHLE 140
>gi|262376937|ref|ZP_06070164.1| peptide deformylase [Acinetobacter lwoffii SH145]
gi|262308282|gb|EEY89418.1| peptide deformylase [Acinetobacter lwoffii SH145]
Length = 176
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++QL+V + + + +V +NP++ + + PYEEGC
Sbjct: 35 MFETMYEAPGIGLAATQVDRHIQLIVMD--LSENKDQPMVFINPKITPLTEETQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P I+ V+RP VKI+A ++ G F + L A QHE DHL
Sbjct: 93 LSVPQIYDKVDRPSRVKIEAINLEGQAFELDADGLLAVCIQHEMDHL 139
>gi|407009727|gb|EKE24809.1| hypothetical protein ACD_6C00031G0003 [uncultured bacterium]
Length = 176
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++QL+V + + + +V +NP++ + + PYEEGC
Sbjct: 35 MFETMYEAPGIGLAATQVDRHIQLIVMD--LSENKDQPMVFINPKITPLTEETQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P I+ V+RP VKI+A ++ G F + L A QHE DHL
Sbjct: 93 LSVPQIYDKVDRPSRVKIEAINLEGQAFELDADGLLAVCIQHEMDHL 139
>gi|312111728|ref|YP_003990044.1| peptide deformylase [Geobacillus sp. Y4.1MC1]
gi|311216829|gb|ADP75433.1| peptide deformylase [Geobacillus sp. Y4.1MC1]
Length = 157
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 65/107 (60%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M DG+GL+APQVGI Q+ V + E G I L+NPR+ + + I EGC
Sbjct: 35 MYDTMIDADGVGLAAPQVGIAKQIAVVDVGDEHGR---IELINPRIMEARGEQIG-PEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFPG+ A+V+R VK+ A+D G F++ + AR QHE DHL
Sbjct: 91 LSFPGLFAEVKRANYVKVRAQDRRGRPFTLKATGFLARALQHEIDHL 137
>gi|336236102|ref|YP_004588718.1| peptide deformylase [Geobacillus thermoglucosidasius C56-YS93]
gi|335362957|gb|AEH48637.1| Peptide deformylase [Geobacillus thermoglucosidasius C56-YS93]
Length = 157
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 65/107 (60%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M DG+GL+APQVGI Q+ V + E G I L+NPR+ + + I EGC
Sbjct: 35 MYDTMIDADGVGLAAPQVGIAKQIAVVDVGDEHGR---IELINPRIMEARGEQIG-PEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFPG+ A+V+R VK+ A+D G F++ + AR QHE DHL
Sbjct: 91 LSFPGLFAEVKRANYVKVRAQDRRGRPFTLKATGFLARALQHEIDHL 137
>gi|410692111|ref|YP_003622732.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Thiomonas sp.
3As]
gi|294338535|emb|CAZ86864.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Thiomonas sp.
3As]
Length = 168
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 70/113 (61%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY ++G+GL+A QV ++ +++V + ER + + L+NP + ++S + +EEGC
Sbjct: 35 MFETMYASNGVGLAATQVDVHERIIVMDTSEERNQP--LALINPEIVRHSAEDKEWEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LS PGI+ V RP +V++ A D G F + L A QHE DHL +VFV
Sbjct: 93 LSVPGIYDKVTRPATVRVRALDAQGQPFEMDADGLTAVCIQHEMDHLLGKVFV 145
>gi|85705033|ref|ZP_01036133.1| peptide deformylase [Roseovarius sp. 217]
gi|85670355|gb|EAQ25216.1| peptide deformylase [Roseovarius sp. 217]
Length = 172
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
MF+ MY GIGL+APQVG+ +L+V + V + G I ++NP + +S++ YEEG
Sbjct: 34 MFETMYDAPGIGLAAPQVGVMDRLIVLDCVKDEGATPRPIAMLNPEITAFSDQTSVYEEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P ADV RP V++ D++G L A QHE DHL
Sbjct: 94 CLSIPDQFADVTRPAEVEVRWMDLDGVEHKEGFGGLWATCVQHEIDHL 141
>gi|288574972|ref|ZP_06393329.1| peptide deformylase [Dethiosulfovibrio peptidovorans DSM 11002]
gi|288570713|gb|EFC92270.1| peptide deformylase [Dethiosulfovibrio peptidovorans DSM 11002]
Length = 164
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 67/107 (62%), Gaps = 6/107 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M +MY+ DG+GL+APQVG ++++ V EG+ VL+NPR+ Y + + +EGC
Sbjct: 35 MESLMYEYDGVGLAAPQVGESLKVAVIA-----YEGKLHVLINPRIVDYDGRQVD-QEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFPGI DV RP SV ++A+D NG +S+ AR HE DHL
Sbjct: 89 LSFPGIFEDVARPASVVVEAQDENGEPYSIEAEGFLARAMCHEIDHL 135
>gi|282896056|ref|ZP_06304082.1| Polypeptide deformylase [Raphidiopsis brookii D9]
gi|281198974|gb|EFA73849.1| Polypeptide deformylase [Raphidiopsis brookii D9]
Length = 218
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 70/113 (61%), Gaps = 2/113 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG+N QL+V + ++ E +VL+NP + + S+++ +EGC
Sbjct: 76 MLQTMYSEDGIGLAAPQVGVNKQLVVIDCNPDKPEIPPLVLINPVIKQVSSELCVAQEGC 135
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS P + +V+RP+ V+I +D G ++ +L AR HE DHL VFV
Sbjct: 136 LSIPKVFLEVKRPKIVEIAYKDEYGRPQTLKADNLLARCILHEMDHLNGVVFV 188
>gi|71737781|ref|YP_272335.1| peptide deformylase [Pseudomonas syringae pv. phaseolicola 1448A]
gi|416013325|ref|ZP_11561485.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. B076]
gi|416022744|ref|ZP_11567837.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4]
gi|71558334|gb|AAZ37545.1| peptide deformylase [Pseudomonas syringae pv. phaseolicola 1448A]
gi|320326682|gb|EFW82727.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. B076]
gi|320331344|gb|EFW87287.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4]
Length = 168
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E +V +NP + K +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSEP--MVFINPEIEKLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ V++ A D NG + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVRVKALDRNGKPYELVAEGLLAICIQHECDHL 139
>gi|422620759|ref|ZP_16689434.1| peptide deformylase [Pseudomonas syringae pv. japonica str.
M301072]
gi|422628602|ref|ZP_16693810.1| peptide deformylase [Pseudomonas syringae pv. pisi str. 1704B]
gi|422665996|ref|ZP_16725866.1| peptide deformylase [Pseudomonas syringae pv. aptata str. DSM
50252]
gi|424065254|ref|ZP_17802734.1| polypeptide deformylase [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|424069923|ref|ZP_17807365.1| polypeptide deformylase [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|440719870|ref|ZP_20900293.1| peptide deformylase [Pseudomonas syringae BRIP34876]
gi|440728125|ref|ZP_20908344.1| peptide deformylase [Pseudomonas syringae BRIP34881]
gi|443640746|ref|ZP_21124596.1| Peptide deformylase [Pseudomonas syringae pv. syringae B64]
gi|330901114|gb|EGH32533.1| peptide deformylase [Pseudomonas syringae pv. japonica str.
M301072]
gi|330937252|gb|EGH41267.1| peptide deformylase [Pseudomonas syringae pv. pisi str. 1704B]
gi|330976422|gb|EGH76478.1| peptide deformylase [Pseudomonas syringae pv. aptata str. DSM
50252]
gi|408001647|gb|EKG41942.1| polypeptide deformylase [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|408003560|gb|EKG43731.1| polypeptide deformylase [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|440362232|gb|ELP99432.1| peptide deformylase [Pseudomonas syringae BRIP34881]
gi|440367110|gb|ELQ04179.1| peptide deformylase [Pseudomonas syringae BRIP34876]
gi|443280763|gb|ELS39768.1| Peptide deformylase [Pseudomonas syringae pv. syringae B64]
Length = 168
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 69/107 (64%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E +VL+NP + K +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSEP--MVLINPEIEKLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ V++ A D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVRVKALDRDGKPYELVAEGLLAICIQHECDHL 139
>gi|384921358|ref|ZP_10021341.1| peptide deformylase [Citreicella sp. 357]
gi|384464774|gb|EIE49336.1| peptide deformylase [Citreicella sp. 357]
Length = 173
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 67/110 (60%), Gaps = 4/110 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE---IVLVNPRVNKYSNKMIPYE 57
M + MY GIGL+APQVG+ +++ + + GEE +V+VNPRV S++ YE
Sbjct: 34 MLETMYDAPGIGLAAPQVGVMSRMIALD-CAKPDNGEEARPLVMVNPRVIASSDERNVYE 92
Query: 58 EGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
EGCLS P +ADVERP+ V+++ D++GA L A QHE DHL
Sbjct: 93 EGCLSIPDQYADVERPKLVEVEWMDLDGAARREEFDGLWATCVQHEIDHL 142
>gi|422406596|ref|ZP_16483621.1| peptide deformylase, partial [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330881833|gb|EGH15982.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4]
Length = 136
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E +V +NP + K +++M Y+EGC
Sbjct: 3 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSEP--MVFINPEIEKLTDEMDQYQEGC 60
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ V++ A D NG + + L A QHE DHL
Sbjct: 61 LSVPGFYENVDRPQKVRVKALDRNGKPYELVAEGLLAICIQHECDHL 107
>gi|282900896|ref|ZP_06308832.1| Formylmethionine deformylase [Cylindrospermopsis raciborskii
CS-505]
gi|281194234|gb|EFA69195.1| Formylmethionine deformylase [Cylindrospermopsis raciborskii
CS-505]
Length = 190
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 70/113 (61%), Gaps = 2/113 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG+N QL+V + ++ E ++L+NP + + S+++ +EGC
Sbjct: 48 MLQTMYSEDGIGLAAPQVGVNKQLVVIDCNPDKPEMPPLILINPVIKQVSSELCVAQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS P + +V+RP+ V+I +D G ++ +L AR HE DHL VFV
Sbjct: 108 LSIPKVFLEVKRPKIVEIAYKDEYGRPQTLKADNLLARCILHEMDHLNGVVFV 160
>gi|227820644|ref|YP_002824614.1| peptide deformylase [Sinorhizobium fredii NGR234]
gi|227339643|gb|ACP23861.1| peptide deformylase [Sinorhizobium fredii NGR234]
Length = 174
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 64/107 (59%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +L+V + E E +V +NP++ K S + YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRLLVLDVSKEGEEKTPLVFINPKIVKSSEERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP ++ ++ D +G + SV L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPAAIAVEYLDRDGKQQSVEADGLLATCLQHEIDHL 141
>gi|237746966|ref|ZP_04577446.1| polypeptide deformylase [Oxalobacter formigenes HOxBLS]
gi|229378317|gb|EEO28408.1| polypeptide deformylase [Oxalobacter formigenes HOxBLS]
Length = 183
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 69/113 (61%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY+ G+GL+APQV + Q++V + +R E V +NP++ K S + +EEGC
Sbjct: 35 MAQTMYEAPGVGLAAPQVNAHRQVVVIDVSEKRNELH--VFINPQIIKASEEKTLFEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PGI+ ++ERP V + A+D++G F + L A QHE DHL+ VFV
Sbjct: 93 LSLPGIYDEIERPARVTVRAQDVDGKAFEMEAEGLLAVCVQHEIDHLKGRVFV 145
>gi|254431727|ref|ZP_05045430.1| peptide deformylase [Cyanobium sp. PCC 7001]
gi|197626180|gb|EDY38739.1| peptide deformylase [Cyanobium sp. PCC 7001]
Length = 183
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 62/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVG++ QL+V + + +VL+NP + + + YEEGC
Sbjct: 44 MLRSMYTAKGIGLAAPQVGVHKQLLVIDLDPDNPATPPMVLINPEIRSFGGSLDTYEEGC 103
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ +V RP +V++ RD G + L AR QHE DHL
Sbjct: 104 LSIPGVYLNVVRPTAVEVSFRDEMGRPQKLRTDGLLARCIQHEMDHL 150
>gi|254436643|ref|ZP_05050137.1| peptide deformylase [Octadecabacter antarcticus 307]
gi|198252089|gb|EDY76403.1| peptide deformylase [Octadecabacter antarcticus 307]
Length = 178
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQ+GI +++V + + + E + +VL+NPRV S+ Y+EG
Sbjct: 38 MLETMYNAPGIGLAAPQLGIMQRMLVMDCIKDDMETPQPMVLINPRVIFASSDTNIYDEG 97
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P +A+VERP VK++ +++G SDL A QHE DHL
Sbjct: 98 CLSIPDQYAEVERPAVVKVEWMNLDGKTQQEEFSDLWATCVQHEIDHL 145
>gi|406998381|gb|EKE16315.1| hypothetical protein ACD_11C00020G0020 [uncultured bacterium]
Length = 152
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 59/107 (55%), Gaps = 5/107 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M M +G+GL+APQ+G +++L V G+ VL+NP+V YS K + EEGC
Sbjct: 35 MLATMRSANGMGLAAPQIGESIRLCVIEE-----NGKTYVLMNPKVTAYSKKKVLMEEGC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFPG + RPE VKI D G + L AR QHE DHL
Sbjct: 90 LSFPGEFFQISRPEEVKIRYIDKEGKNAKLKADGLLARALQHEIDHL 136
>gi|333999158|ref|YP_004531770.1| peptide deformylase [Treponema primitia ZAS-2]
gi|333740828|gb|AEF86318.1| peptide deformylase [Treponema primitia ZAS-2]
Length = 162
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 66/108 (61%), Gaps = 4/108 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + M++ G+GL+ PQVG+ ++ V + G+ V +NP + S + + EEGC
Sbjct: 32 MIETMHEGKGVGLAGPQVGLMKRIFVVHIDGDAPR----VFINPSIVATSQETVKQEEGC 87
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PGI ADV RPESV++ A + G F++ + ARV QHE+DHL+
Sbjct: 88 LSIPGIWADVVRPESVRVQAWNEKGRPFTLEADGIMARVIQHEYDHLE 135
>gi|29840076|ref|NP_829182.1| peptide deformylase [Chlamydophila caviae GPIC]
gi|33301049|sp|Q823U4.1|DEF_CHLCV RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|29834424|gb|AAP05060.1| polypeptide deformylase [Chlamydophila caviae GPIC]
Length = 186
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 67/114 (58%), Gaps = 6/114 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M++ M G+GL+APQVG ++ L V GE EG+ I V +NP ++ S ++
Sbjct: 34 MYETMVAHKGVGLAAPQVGESLSLFVMCVEGETEEGDLIFCDFPKVYINPVLSNPSEDLV 93
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
EGCLS PG+ ADV RP+S+ + A +++G F+ L PAR+ HE DHL
Sbjct: 94 IGREGCLSIPGLRADVYRPQSITVTAVNLDGQEFTEHLEGFPARIIMHENDHLH 147
>gi|333379106|ref|ZP_08470830.1| polypeptide deformylase [Dysgonomonas mossii DSM 22836]
gi|332885374|gb|EGK05623.1| polypeptide deformylase [Dysgonomonas mossii DSM 22836]
Length = 187
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 68/113 (60%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGE---RGEGEEIVLVNPRVNKYSNKMIP 55
MF+ MY DGIGL+APQ+G+ ++L V + P+ E + G + V +NPR+ + S + +
Sbjct: 34 MFETMYNADGIGLAAPQIGLAIRLFVIDLEPLAEDEPKYAGFKKVFINPRIVEESGEPVK 93
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
EEGCLS PGI+ VER E ++I D N D AR QHE+DH++
Sbjct: 94 LEEGCLSIPGINEMVERKERIRIQYLDENFVAHDEVYEDFFARCIQHEYDHIE 146
>gi|407460496|ref|YP_006738271.1| peptide deformylase [Chlamydia psittaci WC]
gi|405787261|gb|AFS26005.1| peptide deformylase [Chlamydia psittaci WC]
Length = 184
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 67/113 (59%), Gaps = 6/113 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M++ M G+GL+APQVG +V+L V GE +G+ I V +NP ++ S ++
Sbjct: 34 MYETMVAHKGVGLAAPQVGESVRLFVMCVEGETEDGDLIFCDFPKVYINPVLSDVSEDLV 93
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
EGCLS PG+ ADV RP S+ + A +++G F+ L PAR+ HE DHL
Sbjct: 94 LGREGCLSIPGLRADVYRPRSITVKAINLDGQEFTEHLEGFPARIIMHENDHL 146
>gi|395764939|ref|ZP_10445559.1| peptide deformylase [Bartonella sp. DB5-6]
gi|395413756|gb|EJF80218.1| peptide deformylase [Bartonella sp. DB5-6]
Length = 176
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 68/107 (63%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D+MY+ G+GL+A Q+G+ ++++V + G+ + +V++NP++ S++ Y+EGC
Sbjct: 35 MLDIMYEAQGVGLAAIQIGVPLRMLVIDVSGDDIQKNPLVIINPKILWLSDERNIYKEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP+ + + +D G + + DL A QHE DHL
Sbjct: 95 LSIPEYYAEVERPKRLCVRYQDRQGKQTEIEADDLLATCLQHEIDHL 141
>gi|422874664|ref|ZP_16921149.1| peptide deformylase [Clostridium perfringens F262]
gi|380304305|gb|EIA16594.1| peptide deformylase [Clostridium perfringens F262]
Length = 147
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 65/108 (60%), Gaps = 4/108 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ +G+GL+APQVGI ++ V + + E G V +NP + + S + EEGC
Sbjct: 35 MIETMYENNGVGLAAPQVGILKRIFVVDAMDEAGSR---VFINPEILEKSGEQTD-EEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG H V+R +KI A D+NG F + + AR QHE+DHL+
Sbjct: 91 LSLPGRHKPVKRANKIKIKALDVNGNEFVLDAEEFLARAIQHEYDHLE 138
>gi|329942666|ref|ZP_08291445.1| peptide deformylase [Chlamydophila psittaci Cal10]
gi|332287261|ref|YP_004422162.1| peptide deformylase [Chlamydophila psittaci 6BC]
gi|384450413|ref|YP_005663013.1| peptide deformylase [Chlamydophila psittaci 6BC]
gi|384451414|ref|YP_005664012.1| peptide deformylase [Chlamydophila psittaci 01DC11]
gi|384452388|ref|YP_005664985.1| peptide deformylase [Chlamydophila psittaci 08DC60]
gi|384453363|ref|YP_005665959.1| peptide deformylase [Chlamydophila psittaci C19/98]
gi|384454342|ref|YP_005666937.1| peptide deformylase [Chlamydophila psittaci 02DC15]
gi|392376504|ref|YP_004064282.1| peptide deformylase [Chlamydophila psittaci RD1]
gi|406592156|ref|YP_006739336.1| peptide deformylase [Chlamydia psittaci CP3]
gi|406593251|ref|YP_006740430.1| peptide deformylase [Chlamydia psittaci NJ1]
gi|406594677|ref|YP_006741469.1| peptide deformylase [Chlamydia psittaci MN]
gi|407453825|ref|YP_006732933.1| peptide deformylase [Chlamydia psittaci 84/55]
gi|407455144|ref|YP_006734035.1| peptide deformylase [Chlamydia psittaci GR9]
gi|407456521|ref|YP_006735094.1| peptide deformylase [Chlamydia psittaci VS225]
gi|407457876|ref|YP_006736181.1| peptide deformylase [Chlamydia psittaci WS/RT/E30]
gi|407459121|ref|YP_006737224.1| peptide deformylase [Chlamydia psittaci M56]
gi|410858286|ref|YP_006974226.1| peptide deformylase [Chlamydia psittaci 01DC12]
gi|449070962|ref|YP_007438042.1| peptide deformylase [Chlamydophila psittaci Mat116]
gi|313847847|emb|CBY16841.1| peptide deformylase [Chlamydophila psittaci RD1]
gi|325507284|gb|ADZ18922.1| peptide deformylase [Chlamydophila psittaci 6BC]
gi|328814926|gb|EGF84915.1| peptide deformylase [Chlamydophila psittaci Cal10]
gi|328914507|gb|AEB55340.1| peptide deformylase [Chlamydophila psittaci 6BC]
gi|334692144|gb|AEG85363.1| peptide deformylase [Chlamydophila psittaci C19/98]
gi|334693124|gb|AEG86342.1| peptide deformylase [Chlamydophila psittaci 01DC11]
gi|334694099|gb|AEG87316.1| peptide deformylase [Chlamydophila psittaci 02DC15]
gi|334695077|gb|AEG88293.1| peptide deformylase [Chlamydophila psittaci 08DC60]
gi|405780584|gb|AFS19334.1| peptide deformylase [Chlamydia psittaci 84/55]
gi|405781687|gb|AFS20436.1| peptide deformylase [Chlamydia psittaci GR9]
gi|405783109|gb|AFS21857.1| peptide deformylase [Chlamydia psittaci MN]
gi|405783782|gb|AFS22529.1| peptide deformylase [Chlamydia psittaci VS225]
gi|405784742|gb|AFS23488.1| peptide deformylase [Chlamydia psittaci WS/RT/E30]
gi|405786038|gb|AFS24783.1| peptide deformylase [Chlamydia psittaci M56]
gi|405788028|gb|AFS26771.1| peptide deformylase [Chlamydia psittaci CP3]
gi|405789123|gb|AFS27865.1| peptide deformylase [Chlamydia psittaci NJ1]
gi|410811181|emb|CCO01826.1| peptide deformylase [Chlamydia psittaci 01DC12]
gi|449039470|gb|AGE74894.1| peptide deformylase [Chlamydophila psittaci Mat116]
Length = 184
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 67/113 (59%), Gaps = 6/113 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M++ M G+GL+APQVG +V+L V GE +G+ I V +NP ++ S ++
Sbjct: 34 MYETMVAHKGVGLAAPQVGESVRLFVMCVEGETEDGDLIFCDFPKVYINPVLSDVSEDLV 93
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
EGCLS PG+ ADV RP S+ + A +++G F+ L PAR+ HE DHL
Sbjct: 94 LGREGCLSIPGLRADVYRPRSITVKAINLDGQEFTEHLEGFPARIIMHENDHL 146
>gi|89098706|ref|ZP_01171588.1| peptide deformylase [Bacillus sp. NRRL B-14911]
gi|89086668|gb|EAR65787.1| peptide deformylase [Bacillus sp. NRRL B-14911]
Length = 181
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 65/107 (60%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M + DG+GL+APQ+GI ++ V + E G I L+NP + + + EGC
Sbjct: 55 MYDTMIEFDGVGLAAPQIGIRKRIAVVDIDDENGT---IELINPEIIETGGEQTG-PEGC 110
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFPG++ +V RP +VKI A+D G F++ D AR QHE DHL
Sbjct: 111 LSFPGLYGEVTRPFTVKIKAQDRKGKSFTLEADDFLARAIQHEIDHL 157
>gi|219684773|ref|ZP_03539715.1| peptide deformylase [Borrelia garinii PBr]
gi|219671718|gb|EED28773.1| peptide deformylase [Borrelia garinii PBr]
Length = 165
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 68/108 (62%), Gaps = 3/108 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M + G+GL+APQVG+++ L V V E + +V +NP + + S ++ Y EGC
Sbjct: 32 MIELMDISGGVGLAAPQVGLDLSLFV---VRENRMAKPLVFINPSIIETSYELNSYREGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG++ D+ RP+ + ++ D NG F++ SD AR+ QHE DHL
Sbjct: 89 LSIPGVYYDLMRPKGIVVNFYDENGKSFTIEDSDFLARIIQHEMDHLN 136
>gi|349700011|ref|ZP_08901640.1| N-formylmethionylaminoacyl-tRNA deformylase [Gluconacetobacter
europaeus LMG 18494]
Length = 180
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 68/109 (62%), Gaps = 2/109 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
MF MY+ GIGL+APQVG+ ++ + + V ++ E +VL+NP V ++ M EEG
Sbjct: 45 MFAAMYQAPGIGLAAPQVGLGMRFAIVD-VSDKDEARNPLVLINPEVIAETDNMAVREEG 103
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
CLS P +A+V RPE+V++ +D++G + DL A QHE DHL+
Sbjct: 104 CLSLPNQYAEVIRPEAVRVRYQDMDGKVQELEADDLLATCLQHEIDHLE 152
>gi|85711005|ref|ZP_01042066.1| N-formylmethionyl-tRNA deformylase [Idiomarina baltica OS145]
gi|85695409|gb|EAQ33346.1| N-formylmethionyl-tRNA deformylase [Idiomarina baltica OS145]
Length = 173
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 64/107 (59%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY++ G+GL+A QV ++ +L V + + E +V +NP + + S EEGC
Sbjct: 35 MFETMYESQGVGLAATQVDVHQRLFVAD--CSENQNEPLVFINPEITR-SEGHFTNEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFP + A VER ES+ + A D NG RFS+ L A QHE DHL
Sbjct: 92 LSFPNVFAKVERAESITVQALDKNGERFSMDAEGLLAICVQHEIDHL 138
>gi|333995693|ref|YP_004528306.1| peptide deformylase [Treponema azotonutricium ZAS-9]
gi|333735210|gb|AEF81159.1| peptide deformylase [Treponema azotonutricium ZAS-9]
Length = 177
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 65/107 (60%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
+ ++ DG+GL+ PQVG ++ + G+ E + +NP + + S I YEEGC
Sbjct: 32 LIQALHDGDGVGLAGPQVGFMERIFAVHIHGD----EARIFINPSIIETSQDTIKYEEGC 87
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG +ADV RP+++KI A + G F++ S + ARV QHE+DHL
Sbjct: 88 LSIPGYYADVVRPKTIKIQAWNEKGRPFTLEASGMLARVIQHEYDHL 134
>gi|306846236|ref|ZP_07478798.1| peptide deformylase [Brucella inopinata BO1]
gi|306273487|gb|EFM55348.1| peptide deformylase [Brucella inopinata BO1]
Length = 175
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 63/107 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY GIGL+A QVG ++++V + E + VNP + + S+K YEEGC
Sbjct: 35 MFDTMYDAPGIGLAAIQVGEPIRMLVIDLAKEGEPKAPHIFVNPTIVQSSDKCSTYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP +VK++ D +G S+ L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPATVKVNYFDADGKPQSMDADGLMATCLQHEIDHL 141
>gi|124024845|ref|YP_001013961.1| peptide deformylase [Prochlorococcus marinus str. NATL1A]
gi|158512738|sp|A2BZN6.1|DEF_PROM1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|123959913|gb|ABM74696.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
NATL1A]
Length = 202
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 62/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY + GIGL+APQVGI +L+V + E +V +NP + S + YEEGC
Sbjct: 62 MLITMYSSKGIGLAAPQVGIQKRLLVIDLNFEDPNSPPMVFINPEIISSSATVDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ +V RP S+K+ RD G ++ L AR QHE DHL
Sbjct: 122 LSIPGVYLNVLRPSSIKLSYRDEMGRPKKMNADGLMARCIQHEIDHL 168
>gi|310828897|ref|YP_003961254.1| peptide deformylase [Eubacterium limosum KIST612]
gi|308740631|gb|ADO38291.1| peptide deformylase [Eubacterium limosum KIST612]
Length = 146
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 64/111 (57%), Gaps = 6/111 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY +G+GL+APQVG+ QL+V + GEG + L+NP + K ++ EE C
Sbjct: 35 MLDTMYAEEGVGLAAPQVGVLKQLIVIDI----GEGP-VTLINPEITKQEGSVVE-EEAC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQVFV 111
LSFP VERPE V ++ D+NG R+ + L AR HE DHL V
Sbjct: 89 LSFPDRSGKVERPEFVTVEYTDLNGDRYEMECQGLMARAVCHEVDHLNGIV 139
>gi|302186428|ref|ZP_07263101.1| peptide deformylase [Pseudomonas syringae pv. syringae 642]
Length = 168
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E +V +NP + K +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSEP--MVFINPEIEKLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ V++ A D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVRVKALDRDGKPYELVAEGLLATCIQHECDHL 139
>gi|148259426|ref|YP_001233553.1| peptide deformylase [Acidiphilium cryptum JF-5]
gi|338980960|ref|ZP_08632202.1| Peptide deformylase [Acidiphilium sp. PM]
gi|146401107|gb|ABQ29634.1| peptide deformylase [Acidiphilium cryptum JF-5]
gi|338208134|gb|EGO96024.1| Peptide deformylase [Acidiphilium sp. PM]
Length = 188
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 67/107 (62%), Gaps = 1/107 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY+ GIGL+APQ+G++++L+V + + + + +V++NP + S +++ EEGC
Sbjct: 48 MFAAMYRAPGIGLAAPQIGVSLRLVVMD-LAPDDQKQPMVMINPEITARSEELVSREEGC 106
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG +A+V RP + + D +G + ++ L A QHE DHL
Sbjct: 107 LSLPGQYAEVIRPGQISVAFEDEDGKKRTIDADGLLAACIQHEIDHL 153
>gi|242277625|ref|YP_002989754.1| peptide deformylase [Desulfovibrio salexigens DSM 2638]
gi|242120519|gb|ACS78215.1| peptide deformylase [Desulfovibrio salexigens DSM 2638]
Length = 170
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 63/107 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ DG+GL+APQVG+ +L+V +P G + + V++NP + + S++ + EE C
Sbjct: 34 MIETMYEDDGVGLAAPQVGVQKRLIVIDPSGPKERTDLQVIINPEIVEKSSQKVDSEEAC 93
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG ++R E+V + D G + D A V QHE DHL
Sbjct: 94 LSCPGFKCVIKRHETVTVTGTDPEGNDVRIEADDFLAIVLQHEIDHL 140
>gi|398891391|ref|ZP_10644767.1| peptide deformylase [Pseudomonas sp. GM55]
gi|398187072|gb|EJM74426.1| peptide deformylase [Pseudomonas sp. GM55]
Length = 168
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP++ +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRTEPR--VFINPKLETLTDEMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ VK+ A D +G + + DL A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQRVKVKALDRDGQPYELIAEDLLAVCIQHECDHL 139
>gi|91204615|emb|CAJ70843.1| strongly similar to peptide deformylase [Candidatus Kuenenia
stuttgartiensis]
Length = 170
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 66/107 (61%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M + GIGL+APQVG +V+L V + VG + V +NP + + + + EEGC
Sbjct: 32 MVELMRRVHGIGLAAPQVGWSVRLFVIDVVGNNVDDN--VFINPSIMEEAGE-TSNEEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFPGI V R +K+ A ++NG + V L DL AR +QHE DHL
Sbjct: 89 LSFPGIMGKVIRTHKIKVCAYNLNGQKIEVVLEDLLARAWQHELDHL 135
>gi|350572382|ref|ZP_08940682.1| peptide deformylase [Neisseria wadsworthii 9715]
gi|349790166|gb|EGZ44085.1| peptide deformylase [Neisseria wadsworthii 9715]
Length = 167
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 69/113 (61%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + ER E V +NP++ + + YEEGC
Sbjct: 35 MFETMYEAKGIGLAATQVNVHERVVVMDLSEERNEPR--VFINPQIT-HKDGETTYEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LS PGI+ V R E V ++A D NG +F++ L A QHE DHL +VF+
Sbjct: 92 LSVPGIYDTVTRAERVTVEALDENGQKFTLEADGLLAICIQHELDHLMGKVFI 144
>gi|326402652|ref|YP_004282733.1| peptide deformylase [Acidiphilium multivorum AIU301]
gi|325049513|dbj|BAJ79851.1| peptide deformylase [Acidiphilium multivorum AIU301]
Length = 185
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 67/107 (62%), Gaps = 1/107 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY+ GIGL+APQ+G++++L+V + + + + +V++NP + S +++ EEGC
Sbjct: 45 MFAAMYRAPGIGLAAPQIGVSLRLVVMD-LAPDDQKQPMVMINPEITARSEELVSREEGC 103
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG +A+V RP + + D +G + ++ L A QHE DHL
Sbjct: 104 LSLPGQYAEVIRPGQISVAFEDEDGKKRTIDADGLLAACIQHEIDHL 150
>gi|87301353|ref|ZP_01084194.1| peptide deformylase [Synechococcus sp. WH 5701]
gi|87284321|gb|EAQ76274.1| peptide deformylase [Synechococcus sp. WH 5701]
Length = 201
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 60/108 (55%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVG++ Q++V + E +VLVNP +N S + YEEGC
Sbjct: 62 MLRSMYSAHGIGLAAPQVGVHKQVLVIDLDPENPATPPMVLVNPEINATSAALNTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG++ V RP ++ RD G + L AR HE DHL+
Sbjct: 122 LSIPGVYLSVVRPSEAEVSYRDEQGRPRRIKADGLLARCILHEMDHLK 169
>gi|225874677|ref|YP_002756136.1| peptide deformylase [Acidobacterium capsulatum ATCC 51196]
gi|254767569|sp|C1F541.1|DEF_ACIC5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|225792384|gb|ACO32474.1| peptide deformylase [Acidobacterium capsulatum ATCC 51196]
Length = 170
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 65/107 (60%), Gaps = 1/107 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+APQ+GI+ +L V + + E+IVL+NP + + EEGC
Sbjct: 35 MFESMYEAKGIGLAAPQIGISKRLTVIDLSFKENPDEKIVLINPEIIHREGRQYE-EEGC 93
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P I V R E V + A++++G F + +L +R FQHE DHL
Sbjct: 94 LSLPDIREKVVRAEKVTVRAQNLDGEWFEMDGEELLSRAFQHEIDHL 140
>gi|104779338|ref|YP_605836.1| peptide deformylase [Pseudomonas entomophila L48]
gi|95108325|emb|CAK13019.1| peptide deformylase 1 [Pseudomonas entomophila L48]
Length = 168
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 67/107 (62%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ Q++V + +R E V +NP V + ++ M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKQVVVMDLSEDRSEPR--VFINPTVEELTHDMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP V++ A+D +G + + L A QHEFDHL
Sbjct: 93 LSVPGFYENVDRPLRVRVKAQDRDGKPYELEAEGLLAVCVQHEFDHL 139
>gi|15964172|ref|NP_384525.1| peptide deformylase [Sinorhizobium meliloti 1021]
gi|334314822|ref|YP_004547441.1| peptide deformylase [Sinorhizobium meliloti AK83]
gi|384528159|ref|YP_005712247.1| Peptide deformylase [Sinorhizobium meliloti BL225C]
gi|407719261|ref|YP_006838923.1| peptide deformylase [Sinorhizobium meliloti Rm41]
gi|433612205|ref|YP_007189003.1| peptide deformylase [Sinorhizobium meliloti GR4]
gi|15073348|emb|CAC41856.1| Probable peptide deformylase [Sinorhizobium meliloti 1021]
gi|333810335|gb|AEG03004.1| Peptide deformylase [Sinorhizobium meliloti BL225C]
gi|334093816|gb|AEG51827.1| Peptide deformylase [Sinorhizobium meliloti AK83]
gi|407317493|emb|CCM66097.1| Peptide deformylase [Sinorhizobium meliloti Rm41]
gi|429550395|gb|AGA05404.1| peptide deformylase [Sinorhizobium meliloti GR4]
Length = 178
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 63/107 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +L+V + E E + +V +NP+V + S + YEEGC
Sbjct: 39 MLETMYDAPGIGLAAIQIGVPKRLLVLDVTKEGEEKQPLVFINPKVVRSSEERSVYEEGC 98
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP ++ ++ D G +V L A QHE DHL
Sbjct: 99 LSIPDYYAEVERPAAITVEYVDREGKEQAVEAEGLLATCLQHEIDHL 145
>gi|424824989|ref|ZP_18249976.1| peptide deformylase [Chlamydophila abortus LLG]
gi|333410088|gb|EGK69075.1| peptide deformylase [Chlamydophila abortus LLG]
Length = 184
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 66/113 (58%), Gaps = 6/113 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M++ M G+GL+APQVG +V L V GE +G+ I V +NP ++ S ++
Sbjct: 34 MYETMVAHKGVGLAAPQVGESVSLFVMCVEGETEDGDLIFCDFPKVYINPVLSNVSEDLV 93
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
EGCLS PG+ ADV RP S+ + A +++G F+ L PAR+ HE DHL
Sbjct: 94 LGREGCLSIPGLRADVYRPRSITVKAINLDGQEFTEHLEGFPARIVMHENDHL 146
>gi|402701205|ref|ZP_10849184.1| peptide deformylase [Pseudomonas fragi A22]
Length = 168
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E +VL+NP + +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRSEP--LVLINPELEMLTDEMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ VKI A D +G F + L A QHE DHL
Sbjct: 93 LSVPGYYENVDRPQRVKIKALDRDGKPFEMIAEGLLAVCIQHECDHL 139
>gi|348590759|ref|YP_004875221.1| peptide deformylase [Taylorella asinigenitalis MCE3]
gi|347974663|gb|AEP37198.1| Peptide deformylase [Taylorella asinigenitalis MCE3]
gi|399117088|emb|CCG19902.1| peptide deformylase [Taylorella asinigenitalis 14/45]
Length = 170
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 70/113 (61%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY ++G+GL+A QV I+ +++V + ER +VL+NP + +S + I +EEGC
Sbjct: 35 MAETMYASNGVGLAATQVDIHKRIVVIDVSEERNNL--LVLINPEITWFSPEKIVHEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LS P I+ +VER V++ A D+NG F + L A QHE DHL +VFV
Sbjct: 93 LSVPTIYDNVERFSEVRVKALDLNGKEFELKADGLLAICIQHELDHLMGKVFV 145
>gi|219685342|ref|ZP_03540161.1| peptide deformylase [Borrelia garinii Far04]
gi|219673115|gb|EED30135.1| peptide deformylase [Borrelia garinii Far04]
Length = 165
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 67/108 (62%), Gaps = 3/108 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M + G+GL+APQVG+++ L V V E +V +NP + + S ++ Y EGC
Sbjct: 32 MIELMDISGGVGLAAPQVGLDLSLFV---VRENRMARPLVFINPSIIETSYELNSYREGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG++ D+ RP+ + ++ D NG F++ SD AR+ QHE DHL
Sbjct: 89 LSIPGVYYDLMRPKGIVVNFYDENGKSFTIEDSDFLARIIQHEMDHLN 136
>gi|163795436|ref|ZP_02189403.1| N-formylmethionyl-tRNA deformylase [alpha proteobacterium BAL199]
gi|159179422|gb|EDP63953.1| N-formylmethionyl-tRNA deformylase [alpha proteobacterium BAL199]
Length = 175
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 63/107 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY G+GL+APQVG+ +++V + G+ + + I LVNP + S+ YEEGC
Sbjct: 35 MFQTMYFAPGVGLAAPQVGVTKRVIVVDVAGKDEKPQPIALVNPEIVWRSDATQIYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P ++ADVER VK+ D +GA + L A QHE DH+
Sbjct: 95 LSLPELYADVERASHVKVRYLDRDGAEQKIEGEGLLAVCLQHEIDHI 141
>gi|89898499|ref|YP_515609.1| peptide deformylase [Chlamydophila felis Fe/C-56]
gi|123722301|sp|Q253S4.1|DEF_CHLFF RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|89331871|dbj|BAE81464.1| polypeptide deformylase [Chlamydophila felis Fe/C-56]
Length = 186
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 67/114 (58%), Gaps = 6/114 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M++ M G+GL+APQVG ++ L V GE +G+ I V +NP ++ S ++
Sbjct: 34 MYETMVAHKGVGLAAPQVGESLSLFVVCVEGETEDGDLIFCDFPKVYINPVLSNASEDLV 93
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
EGCLS PG+ ADV RP+S+ + A +++G F+ L PAR+ HE DHL
Sbjct: 94 IGREGCLSIPGLRADVYRPQSITVTALNLDGQEFTEHLEGFPARIIMHENDHLH 147
>gi|375256533|ref|YP_005015700.1| peptide deformylase [Tannerella forsythia ATCC 43037]
gi|363408265|gb|AEW21951.1| peptide deformylase [Tannerella forsythia ATCC 43037]
Length = 185
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 71/113 (62%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGE-RGEGEEI--VLVNPRVNKYSNKMIP 55
MF+ MY DG+GL+APQ+G ++ L+V + PV R E ++ VL+NP + + S + +
Sbjct: 34 MFETMYHADGVGLAAPQIGRSISLVVIDGTPVANNRIECKDFKRVLINPEIIEESRETVT 93
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
+EEGCLSFPG+H V RPE +K+ + + +L AR+ HE++HLQ
Sbjct: 94 FEEGCLSFPGVHEKVTRPEKIKVRYMNEHFEPQEENLEGFAARIVLHEYEHLQ 146
>gi|417858747|ref|ZP_12503804.1| peptide deformylase [Agrobacterium tumefaciens F2]
gi|338824751|gb|EGP58718.1| peptide deformylase [Agrobacterium tumefaciens F2]
Length = 170
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 64/107 (59%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QVG+ +++V + E E + +V +NP + K S+ + YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQVGVPRRMLVIDVSREDEEKKPVVFINPEILKVSDDISTYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP S+ + D +G + +V L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPASLTVRYVDRDGKQQTVDADGLLATCLQHEIDHL 141
>gi|306840227|ref|ZP_07473002.1| peptide deformylase [Brucella sp. BO2]
gi|306289832|gb|EFM61011.1| peptide deformylase [Brucella sp. BO2]
Length = 175
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 63/107 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY GIGL+A QVG ++++V + E + VNP + + S+K YEEGC
Sbjct: 35 MFDTMYDAPGIGLAAIQVGEPIRMLVIDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP +VK++ D +G S+ L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPATVKVNYFDADGKPQSMEADGLMATCLQHEIDHL 141
>gi|225850189|ref|YP_002730423.1| peptide deformylase [Persephonella marina EX-H1]
gi|225646575|gb|ACO04761.1| peptide deformylase [Persephonella marina EX-H1]
Length = 176
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 67/110 (60%), Gaps = 4/110 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE---IVLVNPRVNKYSNKMIPYE 57
MF MY+ DG+GL+A Q+GI +++V + EGE+ +VL+NP++ + + I
Sbjct: 35 MFKKMYELDGVGLAANQIGIPYRIIVIDTTVREEEGEKGVKLVLINPQIVEKEGE-IEST 93
Query: 58 EGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
EGCLSFPG+ + R E VK+ A+DING + D + V QHE DH+
Sbjct: 94 EGCLSFPGVQITIPRAERVKVKAKDINGNDIEIEGKDFLSVVLQHEIDHI 143
>gi|17988608|ref|NP_541241.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M]
gi|23500757|ref|NP_700197.1| peptide deformylase [Brucella suis 1330]
gi|62317863|ref|YP_223716.1| peptide deformylase [Brucella abortus bv. 1 str. 9-941]
gi|83269841|ref|YP_419132.1| peptide deformylase [Brucella melitensis biovar Abortus 2308]
gi|148557936|ref|YP_001257946.1| peptide deformylase [Brucella ovis ATCC 25840]
gi|161621082|ref|YP_001594968.1| peptide deformylase [Brucella canis ATCC 23365]
gi|163845148|ref|YP_001622803.1| peptide deformylase [Brucella suis ATCC 23445]
gi|225629484|ref|ZP_03787517.1| peptide deformylase [Brucella ceti str. Cudo]
gi|225686789|ref|YP_002734761.1| peptide deformylase [Brucella melitensis ATCC 23457]
gi|237817404|ref|ZP_04596396.1| peptide deformylase [Brucella abortus str. 2308 A]
gi|256015794|ref|YP_003105803.1| peptide deformylase [Brucella microti CCM 4915]
gi|340792797|ref|YP_004758261.1| peptide deformylase [Brucella pinnipedialis B2/94]
gi|376278980|ref|YP_005109013.1| peptide deformylase [Brucella suis VBI22]
gi|384223540|ref|YP_005614705.1| peptide deformylase [Brucella suis 1330]
gi|17984410|gb|AAL53505.1| polypeptide deformylase [Brucella melitensis bv. 1 str. 16M]
gi|23464412|gb|AAN34202.1| polypeptide deformylase [Brucella suis 1330]
gi|62198056|gb|AAX76355.1| Def-2, polypeptide deformylase [Brucella abortus bv. 1 str. 9-941]
gi|82940115|emb|CAJ13163.1| Formylmethionine deformylase [Brucella melitensis biovar Abortus
2308]
gi|148369221|gb|ABQ62093.1| peptide deformylase [Brucella ovis ATCC 25840]
gi|161337893|gb|ABX64197.1| peptide deformylase [Brucella canis ATCC 23365]
gi|163675871|gb|ABY39981.1| peptide deformylase [Brucella suis ATCC 23445]
gi|225615980|gb|EEH13029.1| peptide deformylase [Brucella ceti str. Cudo]
gi|225642894|gb|ACO02807.1| peptide deformylase [Brucella melitensis ATCC 23457]
gi|237788217|gb|EEP62433.1| peptide deformylase [Brucella abortus str. 2308 A]
gi|255998454|gb|ACU50141.1| peptide deformylase [Brucella microti CCM 4915]
gi|340561256|gb|AEK56493.1| peptide deformylase [Brucella pinnipedialis B2/94]
gi|343384988|gb|AEM20479.1| peptide deformylase [Brucella suis 1330]
gi|358260418|gb|AEU08151.1| peptide deformylase [Brucella suis VBI22]
Length = 187
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 63/107 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY GIGL+A QVG ++++V + E + VNP + + S+K YEEGC
Sbjct: 47 MFDTMYDAPGIGLAAIQVGEPIRMLVIDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGC 106
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP +VK++ D +G S+ L A QHE DHL
Sbjct: 107 LSIPDYYAEVERPATVKVNYFDADGKPQSMEADGLMATCLQHEIDHL 153
>gi|329114447|ref|ZP_08243209.1| Peptide deformylase [Acetobacter pomorum DM001]
gi|326696523|gb|EGE48202.1| Peptide deformylase [Acetobacter pomorum DM001]
Length = 275
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY+ GIGL+APQVG++ + ++ + +GE+ + IV++NP V + M EEGC
Sbjct: 142 MFSAMYQAPGIGLAAPQVGLSQRFLLVD-LGEKDARDPIVMINPEVIAETEDMAVREEGC 200
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS P +A+V RPE +++ +ING L A QHE DHL+
Sbjct: 201 LSLPNQYAEVVRPEKIRVRWNNINGDVVEREAEGLLATCIQHEIDHLE 248
>gi|384534517|ref|YP_005718602.1| probabable peptide deformylase [Sinorhizobium meliloti SM11]
gi|418400256|ref|ZP_12973798.1| peptide deformylase [Sinorhizobium meliloti CCNWSX0020]
gi|23396548|sp|Q92SH6.2|DEF_RHIME RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|336031409|gb|AEH77341.1| probabable peptide deformylase [Sinorhizobium meliloti SM11]
gi|359505725|gb|EHK78245.1| peptide deformylase [Sinorhizobium meliloti CCNWSX0020]
Length = 174
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 63/107 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +L+V + E E + +V +NP+V + S + YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPKRLLVLDVTKEGEEKQPLVFINPKVVRSSEERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP ++ ++ D G +V L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPAAITVEYVDREGKEQAVEAEGLLATCLQHEIDHL 141
>gi|189023113|ref|YP_001932854.1| peptide deformylase [Brucella abortus S19]
gi|256262077|ref|ZP_05464609.1| peptide deformylase [Brucella melitensis bv. 2 str. 63/9]
gi|260545098|ref|ZP_05820919.1| peptide deformylase [Brucella abortus NCTC 8038]
gi|260565079|ref|ZP_05835564.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M]
gi|260567720|ref|ZP_05838189.1| peptide deformylase [Brucella suis bv. 4 str. 40]
gi|260756222|ref|ZP_05868570.1| polypeptide deformylase [Brucella abortus bv. 6 str. 870]
gi|260760409|ref|ZP_05872757.1| polypeptide deformylase [Brucella abortus bv. 4 str. 292]
gi|260763649|ref|ZP_05875981.1| polypeptide deformylase [Brucella abortus bv. 2 str. 86/8/59]
gi|260882046|ref|ZP_05893660.1| peptide deformylase [Brucella abortus bv. 9 str. C68]
gi|261216476|ref|ZP_05930757.1| polypeptide deformylase [Brucella abortus bv. 3 str. Tulya]
gi|261220844|ref|ZP_05935125.1| peptide deformylase [Brucella ceti B1/94]
gi|261312913|ref|ZP_05952110.1| peptide deformylase [Brucella pinnipedialis M163/99/10]
gi|261318308|ref|ZP_05957505.1| peptide deformylase [Brucella pinnipedialis B2/94]
gi|261322743|ref|ZP_05961940.1| peptide deformylase [Brucella neotomae 5K33]
gi|261750724|ref|ZP_05994433.1| peptide deformylase [Brucella suis bv. 5 str. 513]
gi|261753980|ref|ZP_05997689.1| peptide deformylase [Brucella suis bv. 3 str. 686]
gi|261757222|ref|ZP_06000931.1| peptide deformylase [Brucella sp. F5/99]
gi|265986106|ref|ZP_06098663.1| peptide deformylase [Brucella pinnipedialis M292/94/1]
gi|265990325|ref|ZP_06102882.1| peptide deformylase [Brucella melitensis bv. 1 str. Rev.1]
gi|265992568|ref|ZP_06105125.1| peptide deformylase [Brucella melitensis bv. 3 str. Ether]
gi|265995800|ref|ZP_06108357.1| peptide deformylase [Brucella ceti M490/95/1]
gi|294853988|ref|ZP_06794660.1| polypeptide deformylase [Brucella sp. NVSL 07-0026]
gi|297249202|ref|ZP_06932903.1| polypeptide deformylase [Brucella abortus bv. 5 str. B3196]
gi|376271532|ref|YP_005114577.1| peptide deformylase [Brucella abortus A13334]
gi|376277456|ref|YP_005153517.1| peptide deformylase [Brucella canis HSK A52141]
gi|384213548|ref|YP_005602631.1| peptide deformylase [Brucella melitensis M5-90]
gi|384410650|ref|YP_005599270.1| peptide deformylase [Brucella melitensis M28]
gi|384447147|ref|YP_005661365.1| peptide deformylase [Brucella melitensis NI]
gi|423168232|ref|ZP_17154934.1| peptide deformylase [Brucella abortus bv. 1 str. NI435a]
gi|423172333|ref|ZP_17159007.1| peptide deformylase [Brucella abortus bv. 1 str. NI474]
gi|423173936|ref|ZP_17160606.1| peptide deformylase [Brucella abortus bv. 1 str. NI486]
gi|423175812|ref|ZP_17162478.1| peptide deformylase [Brucella abortus bv. 1 str. NI488]
gi|423181762|ref|ZP_17168402.1| peptide deformylase [Brucella abortus bv. 1 str. NI010]
gi|423184895|ref|ZP_17171531.1| peptide deformylase [Brucella abortus bv. 1 str. NI016]
gi|423188048|ref|ZP_17174661.1| peptide deformylase [Brucella abortus bv. 1 str. NI021]
gi|423190465|ref|ZP_17177074.1| peptide deformylase [Brucella abortus bv. 1 str. NI259]
gi|54036953|sp|P63914.1|DEF_BRUSU RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|54040741|sp|P63913.1|DEF_BRUME RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|189021687|gb|ACD74408.1| Formylmethionine deformylase [Brucella abortus S19]
gi|260098369|gb|EEW82243.1| peptide deformylase [Brucella abortus NCTC 8038]
gi|260152722|gb|EEW87815.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M]
gi|260154385|gb|EEW89466.1| peptide deformylase [Brucella suis bv. 4 str. 40]
gi|260670727|gb|EEX57667.1| polypeptide deformylase [Brucella abortus bv. 4 str. 292]
gi|260674070|gb|EEX60891.1| polypeptide deformylase [Brucella abortus bv. 2 str. 86/8/59]
gi|260676330|gb|EEX63151.1| polypeptide deformylase [Brucella abortus bv. 6 str. 870]
gi|260871574|gb|EEX78643.1| peptide deformylase [Brucella abortus bv. 9 str. C68]
gi|260918083|gb|EEX84944.1| polypeptide deformylase [Brucella abortus bv. 3 str. Tulya]
gi|260919428|gb|EEX86081.1| peptide deformylase [Brucella ceti B1/94]
gi|261297531|gb|EEY01028.1| peptide deformylase [Brucella pinnipedialis B2/94]
gi|261298723|gb|EEY02220.1| peptide deformylase [Brucella neotomae 5K33]
gi|261301939|gb|EEY05436.1| peptide deformylase [Brucella pinnipedialis M163/99/10]
gi|261737206|gb|EEY25202.1| peptide deformylase [Brucella sp. F5/99]
gi|261740477|gb|EEY28403.1| peptide deformylase [Brucella suis bv. 5 str. 513]
gi|261743733|gb|EEY31659.1| peptide deformylase [Brucella suis bv. 3 str. 686]
gi|262550097|gb|EEZ06258.1| peptide deformylase [Brucella ceti M490/95/1]
gi|262763438|gb|EEZ09470.1| peptide deformylase [Brucella melitensis bv. 3 str. Ether]
gi|263000994|gb|EEZ13684.1| peptide deformylase [Brucella melitensis bv. 1 str. Rev.1]
gi|263091766|gb|EEZ16097.1| peptide deformylase [Brucella melitensis bv. 2 str. 63/9]
gi|264658303|gb|EEZ28564.1| peptide deformylase [Brucella pinnipedialis M292/94/1]
gi|294819643|gb|EFG36643.1| polypeptide deformylase [Brucella sp. NVSL 07-0026]
gi|297173071|gb|EFH32435.1| polypeptide deformylase [Brucella abortus bv. 5 str. B3196]
gi|326411197|gb|ADZ68261.1| peptide deformylase [Brucella melitensis M28]
gi|326554488|gb|ADZ89127.1| peptide deformylase [Brucella melitensis M5-90]
gi|349745144|gb|AEQ10686.1| peptide deformylase [Brucella melitensis NI]
gi|363402704|gb|AEW19673.1| peptide deformylase [Brucella abortus A13334]
gi|363405830|gb|AEW16124.1| peptide deformylase [Brucella canis HSK A52141]
gi|374536755|gb|EHR08275.1| peptide deformylase [Brucella abortus bv. 1 str. NI474]
gi|374538725|gb|EHR10232.1| peptide deformylase [Brucella abortus bv. 1 str. NI435a]
gi|374539937|gb|EHR11439.1| peptide deformylase [Brucella abortus bv. 1 str. NI486]
gi|374546352|gb|EHR17812.1| peptide deformylase [Brucella abortus bv. 1 str. NI010]
gi|374547195|gb|EHR18654.1| peptide deformylase [Brucella abortus bv. 1 str. NI016]
gi|374554228|gb|EHR25641.1| peptide deformylase [Brucella abortus bv. 1 str. NI021]
gi|374556505|gb|EHR27910.1| peptide deformylase [Brucella abortus bv. 1 str. NI259]
gi|374556612|gb|EHR28016.1| peptide deformylase [Brucella abortus bv. 1 str. NI488]
Length = 175
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 63/107 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY GIGL+A QVG ++++V + E + VNP + + S+K YEEGC
Sbjct: 35 MFDTMYDAPGIGLAAIQVGEPIRMLVIDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP +VK++ D +G S+ L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPATVKVNYFDADGKPQSMEADGLMATCLQHEIDHL 141
>gi|320103814|ref|YP_004179405.1| peptide deformylase [Isosphaera pallida ATCC 43644]
gi|319751096|gb|ADV62856.1| peptide deformylase [Isosphaera pallida ATCC 43644]
Length = 200
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGE-EIVLVNPRVNKYSNKMIPYEEG 59
MF +MY+ +GIGL+A QV + Q + N G + E E V +NP++ + EEG
Sbjct: 32 MFALMYENEGIGLAANQVALPYQFFILNISGNPEQTELEQVFINPQILR-KQATAQDEEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLSFPG+H V RP +K+ A D G F + +L AR QHE+DHL
Sbjct: 91 CLSFPGLHGKVLRPRRIKVRAWDQYGVPFELEADELLARAIQHEWDHL 138
>gi|297171900|gb|ADI22887.1| N-formylmethionyl-tRNA deformylase [uncultured Rhizobium sp.
HF0500_35F13]
Length = 194
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+++MY+ +GIGL+A QV + ++ + N G+R EGEE+V +NP +++ EEGC
Sbjct: 32 MYELMYEANGIGLAANQVDLPLRFFIVNTAGDRDEGEELVFINPVLSQ-PEGRGEEEEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P ++ V RP ++ + A ++ G FS LS+ ARV QHE DHL
Sbjct: 91 LSIPAVYGKVMRPTTIHVQAYNLEGQPFSAELSETLARVVQHETDHL 137
>gi|150395282|ref|YP_001325749.1| peptide deformylase [Sinorhizobium medicae WSM419]
gi|150026797|gb|ABR58914.1| peptide deformylase [Sinorhizobium medicae WSM419]
Length = 174
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 63/107 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +L+V + E E + +V +NP+V + S + YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPKRLLVLDVTKEGEEKQPLVFINPKVVRSSEERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP ++ ++ D G +V L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPAAITVEYVDREGKEQAVEADGLLATCLQHEIDHL 141
>gi|83855044|ref|ZP_00948574.1| peptide deformylase [Sulfitobacter sp. NAS-14.1]
gi|83842887|gb|EAP82054.1| peptide deformylase [Sulfitobacter sp. NAS-14.1]
Length = 153
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
M MY GIGL+APQ+G+ +L+V + V E GE +V+ NP + S+ + YEEG
Sbjct: 15 MLATMYDAPGIGLAAPQIGVMNRLIVMDCVKEEGEAPRPLVMFNPEIIAASDALNTYEEG 74
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P ADV RP V + DI+G + + + L A QHE DHL
Sbjct: 75 CLSIPEQFADVTRPADVDVRWIDIDGNEQTETFTKLWATCVQHEIDHL 122
>gi|288817601|ref|YP_003431948.1| peptide deformylase [Hydrogenobacter thermophilus TK-6]
gi|384128361|ref|YP_005510974.1| peptide deformylase [Hydrogenobacter thermophilus TK-6]
gi|288787000|dbj|BAI68747.1| peptide deformylase [Hydrogenobacter thermophilus TK-6]
gi|308751198|gb|ADO44681.1| peptide deformylase [Hydrogenobacter thermophilus TK-6]
Length = 169
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 66/108 (61%), Gaps = 2/108 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVG-ERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
MF+ MY +G+GL+A Q+GI++ +MV + E + V++NP + + + + Y+EG
Sbjct: 34 MFETMYHAEGVGLAANQIGISLSIMVIDTSKKEDSPLLKAVMINPELLEAEGE-VKYKEG 92
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLSFPG+ +V R VK+ A DING L PA VFQHE DHL
Sbjct: 93 CLSFPGLSVEVSRYSKVKVKALDINGEEKLYLLEGFPAIVFQHEMDHL 140
>gi|296134589|ref|YP_003641831.1| peptide deformylase [Thiomonas intermedia K12]
gi|295794711|gb|ADG29501.1| peptide deformylase [Thiomonas intermedia K12]
Length = 168
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 70/113 (61%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY ++G+GL+A QV ++ +++V + +R + + L+NP + ++S + +EEGC
Sbjct: 35 MFETMYASNGVGLAATQVDVHERIIVMDTSEQRNQP--LALINPEIVRHSAEDKEWEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LS PGI+ V RP +V++ A D G F + L A QHE DHL +VFV
Sbjct: 93 LSVPGIYDKVTRPATVRVRALDAQGQPFEMDADGLTAVCIQHEMDHLMGKVFV 145
>gi|62184939|ref|YP_219724.1| peptide deformylase [Chlamydophila abortus S26/3]
gi|81312889|sp|Q5L6G8.1|DEF_CHLAB RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|62148006|emb|CAH63757.1| peptide deformylase [Chlamydophila abortus S26/3]
Length = 184
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 66/113 (58%), Gaps = 6/113 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M++ M G+GL+APQVG +V L V GE +G+ I V +NP ++ S ++
Sbjct: 34 MYETMVAHKGVGLAAPQVGESVSLFVMCVEGETEDGDLIFCDFPKVYINPVLSNVSEDLV 93
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
EGCLS PG+ ADV RP S+ + A +++G F+ L PAR+ HE DHL
Sbjct: 94 LGREGCLSIPGLRADVYRPRSITVKAINLDGQEFTEHLEGFPARIVMHENDHL 146
>gi|33863868|ref|NP_895428.1| peptide deformylase [Prochlorococcus marinus str. MIT 9313]
gi|124022020|ref|YP_001016327.1| peptide deformylase [Prochlorococcus marinus str. MIT 9303]
gi|39930996|sp|Q7V5F9.1|DEF2_PROMM RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
Full=Polypeptide deformylase 2
gi|33635451|emb|CAE21776.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
MIT 9313]
gi|123962306|gb|ABM77062.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
MIT 9303]
Length = 201
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 61/108 (56%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVGI+ QL+V + E +VL+NP + S + YEEGC
Sbjct: 62 MLRSMYAAKGIGLAAPQVGIHKQLLVLDLDLETPTTPPVVLINPEIISSSATVETYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG++ +V RP + + RD G + L AR QHE DHL+
Sbjct: 122 LSIPGVYLNVVRPSEIVLSFRDEMGRPRKMKADGLMARCIQHEMDHLE 169
>gi|387927086|ref|ZP_10129765.1| peptide deformylase [Bacillus methanolicus PB1]
gi|387589230|gb|EIJ81550.1| peptide deformylase [Bacillus methanolicus PB1]
Length = 161
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 65/108 (60%), Gaps = 4/108 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M++ M + DG+GL+APQ+G+ Q+ + + E G I L+NP + + S + EGC
Sbjct: 35 MYNTMIEYDGVGLAAPQIGVKKQIAIVDIDDETGT---IELINPEILETSGEQTG-PEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LSFPG++ +V RP VK+ A+D G F + D AR QHE DHLQ
Sbjct: 91 LSFPGLYGEVTRPYFVKVKAQDRKGKPFILEAEDFLARAIQHEIDHLQ 138
>gi|418407893|ref|ZP_12981210.1| peptide deformylase [Agrobacterium tumefaciens 5A]
gi|358005879|gb|EHJ98204.1| peptide deformylase [Agrobacterium tumefaciens 5A]
Length = 170
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 64/107 (59%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QVG+ +++V + E E + +V +NP + K S+ + YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQVGVPRRMLVIDVSREDEEKKPVVFINPEILKVSDDVSAYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP S+ + D +G + +V L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPASLTVRYVDRDGKQQTVDADGLLATCLQHEIDHL 141
>gi|374299878|ref|YP_005051517.1| Peptide deformylase [Desulfovibrio africanus str. Walvis Bay]
gi|332552814|gb|EGJ49858.1| Peptide deformylase [Desulfovibrio africanus str. Walvis Bay]
Length = 182
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 62/107 (57%), Gaps = 1/107 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +GIGL+APQVG +L+V + G + VLVNP++ K++ EEGC
Sbjct: 34 MAETMYTNEGIGLAAPQVGECCRLVVIDITGPDKREDLRVLVNPKITAAEGKVVS-EEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS G +DV R E V ++A D++G S+ L A QHE DHL
Sbjct: 93 LSVSGYRSDVARSEKVTVEATDLDGKPLSIEADGLLAVCLQHELDHL 139
>gi|386289394|ref|ZP_10066524.1| peptide deformylase [gamma proteobacterium BDW918]
gi|385277457|gb|EIF41439.1| peptide deformylase [gamma proteobacterium BDW918]
Length = 172
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ GIGL+A QV ++ Q++V + +R E +V +NP ++ + Y+EGC
Sbjct: 35 MFDTMYEAPGIGLAASQVNVHEQIVVIDISEDRSEP--LVFINPEISVLDHDTFQYDEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + VERP+ +++ A D NG F ++ L A QHE DHL
Sbjct: 93 LSVPGFYETVERPQHIRVKALDRNGDAFEMTPEGLLAVCIQHENDHL 139
>gi|159042735|ref|YP_001531529.1| peptide deformylase [Dinoroseobacter shibae DFL 12]
gi|157910495|gb|ABV91928.1| peptide deformylase [Dinoroseobacter shibae DFL 12]
Length = 187
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 59/107 (55%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+ PQV +++ + + GE + +VL+NP + S +M YEEGC
Sbjct: 48 MLATMYDAPGIGLAGPQVAAMTRIITMDCAPKDGEPDPMVLINPEIVWSSEEMNTYEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P ++ADVERP V++ + G S L A QHE DHL
Sbjct: 108 LSIPEMYADVERPAEVEVRWTTLEGGDASARWGGLHATCVQHEIDHL 154
>gi|406998998|gb|EKE16793.1| hypothetical protein ACD_10C00794G0003 [uncultured bacterium]
Length = 170
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 65/107 (60%), Gaps = 1/107 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+APQVG+ +++V + + + G E +VL+NP+V S + YEEGC
Sbjct: 34 MLETMYDAPGIGLAAPQVGVMRRVIVMDCIKD-GPPEPMVLLNPQVIWSSEDLSTYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+V+RP +V++ D+NG L A QHE DHL
Sbjct: 93 LSIPDQYAEVKRPAAVRVRWMDLNGEEQERGFEGLWATCVQHEIDHL 139
>gi|303326112|ref|ZP_07356555.1| peptide deformylase [Desulfovibrio sp. 3_1_syn3]
gi|345893006|ref|ZP_08843814.1| polypeptide deformylase [Desulfovibrio sp. 6_1_46AFAA]
gi|302864028|gb|EFL86959.1| peptide deformylase [Desulfovibrio sp. 3_1_syn3]
gi|345046634|gb|EGW50515.1| polypeptide deformylase [Desulfovibrio sp. 6_1_46AFAA]
Length = 172
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+APQVG N++++V +P G+ + + VL+NP + ++ +EGC
Sbjct: 34 MLETMYAAPGVGLAAPQVGRNIRMLVMDPAGKDEDKQPRVLINPVLELSGEDVVSEQEGC 93
Query: 61 LSFP-GIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P ADV R V + A D++G L+D PA + QHE DHL
Sbjct: 94 LSVPLNYRADVPRKSRVLLKATDLDGNGIEEDLTDFPAIIIQHEADHL 141
>gi|407005843|gb|EKE21866.1| hypothetical protein ACD_7C00100G0003 [uncultured bacterium]
Length = 142
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 63/107 (58%), Gaps = 5/107 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M M + +G+GL+APQ+G +++L V +GE VL+NP++ +SN + EEGC
Sbjct: 33 MLATMRENNGMGLAAPQIGKSIRLCVI-----EHQGETYVLINPKITSHSNIKLKNEEGC 87
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFPG VER E+V+ D G + + +L AR QHE DHL
Sbjct: 88 LSFPGKFIPVERFETVQARYLDEKGKKCKIKAQNLLARALQHEIDHL 134
>gi|51598326|ref|YP_072514.1| peptide deformylase [Borrelia garinii PBi]
gi|51572897|gb|AAU06922.1| polypeptide deformylase [Borrelia garinii PBi]
Length = 186
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 66/108 (61%), Gaps = 3/108 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M + G+GL+APQVG+++ L V V E +V +NP + + S ++ Y+EGC
Sbjct: 53 MIELMDISGGVGLAAPQVGLDLSLFV---VRENRMARPLVFINPSITETSYELNSYKEGC 109
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG++ ++ RP + + D NG F++ SD AR+ QHE DHL
Sbjct: 110 LSIPGVYYNLMRPNGIVVKFYDENGKSFTIENSDFLARIIQHEMDHLN 157
>gi|407784413|ref|ZP_11131562.1| peptide deformylase [Celeribacter baekdonensis B30]
gi|407204115|gb|EKE74096.1| peptide deformylase [Celeribacter baekdonensis B30]
Length = 163
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 61/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY G GL+ PQVG ++L V + + G +V++NP + +S++ + +E C
Sbjct: 35 MFDTMYAAPGRGLAGPQVGAMLRLFVMDATWKEGVKSPLVMINPEILSHSDERVEMDEVC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG+ A V RP + I D++G + AR+ QHEFDHL
Sbjct: 95 LSIPGVEAPVTRPTRITIRWVDLDGETHVREMDGAEARIAQHEFDHL 141
>gi|399024969|ref|ZP_10726987.1| peptide deformylase [Chryseobacterium sp. CF314]
gi|398079070|gb|EJL69942.1| peptide deformylase [Chryseobacterium sp. CF314]
Length = 190
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 73/119 (61%), Gaps = 11/119 (9%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGERGEGEEI---------VLVNPRVNKY 49
MF+ MY +GIGL+APQ+G++++L V + P+ E + E+I V +N ++ +
Sbjct: 34 MFETMYSANGIGLAAPQIGLDIRLFVIDVTPLAEDEDYEDIKDELKDFKKVFINAKILEE 93
Query: 50 SNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
S + + EGCLS P + DV+R ++ I+ D N + + + SD+ ARV QHE+DH++
Sbjct: 94 SGEEWKFNEGCLSIPDVREDVKRKGTIVIEYHDENFVKHTETFSDIRARVIQHEYDHIE 152
>gi|330444327|ref|YP_004377313.1| peptide deformylase [Chlamydophila pecorum E58]
gi|328807437|gb|AEB41610.1| peptide deformylase [Chlamydophila pecorum E58]
Length = 186
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 67/114 (58%), Gaps = 6/114 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M++ M G+GL+APQ+G ++ L V GE +GE I V +NP ++ S ++
Sbjct: 34 MYETMIAHKGVGLAAPQIGKSLSLFVMCVEGETPDGELIFCDFPKVFINPVLSSPSEHLV 93
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
EGCLS PG+ +V RP+ V + A +++G +FS +L PAR+ HE DHL
Sbjct: 94 IAYEGCLSIPGLRGEVFRPDRVTVTAMNLDGQKFSETLEGFPARIVMHETDHLH 147
>gi|308173535|ref|YP_003920240.1| polypeptide deformylase [Bacillus amyloliquefaciens DSM 7]
gi|384159444|ref|YP_005541517.1| peptide deformylase [Bacillus amyloliquefaciens TA208]
gi|384164121|ref|YP_005545500.1| polypeptide deformylase [Bacillus amyloliquefaciens LL3]
gi|384168491|ref|YP_005549869.1| peptide deformylase [Bacillus amyloliquefaciens XH7]
gi|307606399|emb|CBI42770.1| polypeptide deformylase [Bacillus amyloliquefaciens DSM 7]
gi|328553532|gb|AEB24024.1| peptide deformylase [Bacillus amyloliquefaciens TA208]
gi|328911676|gb|AEB63272.1| polypeptide deformylase [Bacillus amyloliquefaciens LL3]
gi|341827770|gb|AEK89021.1| peptide deformylase [Bacillus amyloliquefaciens XH7]
Length = 160
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 66/108 (61%), Gaps = 4/108 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M + DG+GL+APQ+GI + V + +GE E I LVNP + + S + I E GC
Sbjct: 35 MYDTMLEMDGVGLAAPQIGILKRAAVVD-IGE--ESGRIDLVNPVILEKSGEQIGVE-GC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LSFPG++ +V RP+ VK+ A D G F V AR QHE DHL+
Sbjct: 91 LSFPGVYGEVTRPDYVKVKAYDRKGKPFIVEAEGFLARAIQHEMDHLE 138
>gi|452944652|ref|YP_007500817.1| peptide deformylase [Hydrogenobaculum sp. HO]
gi|452883070|gb|AGG15774.1| peptide deformylase [Hydrogenobaculum sp. HO]
Length = 171
Score = 87.8 bits (216), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 66/109 (60%), Gaps = 3/109 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI--VLVNPRVNKYSNKMIPYEE 58
M + MYK DGIGL+A QV I + +MV + + E+ VL+NP V + I ++E
Sbjct: 33 MKETMYKNDGIGLAANQVNIPLSIMVIDTTSREDDQEKFKDVLINPTVLAKEGE-IKFKE 91
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
GCLSFPG+ +V R + + I A + ++LS LPA VFQHEFDHL
Sbjct: 92 GCLSFPGLQVEVVRAKEITIKAINEREEEVILNLSGLPAIVFQHEFDHL 140
>gi|94676503|ref|YP_588858.1| peptide deformylase [Baumannia cicadellinicola str. Hc (Homalodisca
coagulata)]
gi|123384127|sp|Q1LT56.1|DEF_BAUCH RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|94219653|gb|ABF13812.1| peptide deformylase [Baumannia cicadellinicola str. Hc (Homalodisca
coagulata)]
Length = 167
Score = 87.8 bits (216), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 67/107 (62%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY +GIGL+APQV IN+ ++V + V E E + +VL+NP + S + EGC
Sbjct: 35 MFDTMYHKNGIGLAAPQVNINLNIIVID-VSENKE-QRLVLINPELLAKSGET-GIHEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P H V R +++K+ A D+NG F++ +DL A QHE DHL
Sbjct: 92 LSIPEQHGFVPRAKNIKVRALDLNGNSFNLETNDLQAICIQHEMDHL 138
>gi|253987938|ref|YP_003039294.1| peptide deformylase 2 [Photorhabdus asymbiotica]
gi|253779388|emb|CAQ82549.1| peptide deformylase 2 [Photorhabdus asymbiotica]
Length = 168
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 67/109 (61%), Gaps = 4/109 (3%)
Query: 1 MFDVMYKTD-GIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
M D MY TD GIGL+APQVG +++ + R E ++LVNP++ + +I +EG
Sbjct: 34 MLDTMYSTDNGIGLAAPQVGRKEAVIIIDISATRDE--PLILVNPKIVEKDRSVIG-QEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
CLS PG +ADVER E VK++A + +G +V D A V QHE DHL
Sbjct: 91 CLSVPGYYADVERFEKVKVEALNRHGETITVESEDFLAIVMQHEIDHLH 139
>gi|374812525|ref|ZP_09716262.1| peptide deformylase [Treponema primitia ZAS-1]
Length = 162
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 4/108 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + M+++ G+GL+ PQVG ++ V + G+ V +NP + S + + EEGC
Sbjct: 32 MIETMHQSKGVGLAGPQVGFMKRIFVIHIEGDVPR----VFINPSIVATSQETVKLEEGC 87
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PGI ADV RPE+VKI A + G F++ + ARV HE+DHL+
Sbjct: 88 LSLPGIWADVVRPETVKIQAWNEKGRPFTMETDGILARVILHEYDHLE 135
>gi|422224061|ref|ZP_16383869.1| polypeptide deformylase [Pseudomonas avellanae BPIC 631]
gi|422589569|ref|ZP_16664230.1| peptide deformylase [Pseudomonas syringae pv. morsprunorum str.
M302280]
gi|422652050|ref|ZP_16714839.1| peptide deformylase [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|330876380|gb|EGH10529.1| peptide deformylase [Pseudomonas syringae pv. morsprunorum str.
M302280]
gi|330965122|gb|EGH65382.1| peptide deformylase [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|407992704|gb|EKG34275.1| polypeptide deformylase [Pseudomonas avellanae BPIC 631]
Length = 168
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E +V +NP + K +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSEP--MVFINPEIEKLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ V++ A D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVRVKALDRDGKPYELVAEGLLAICIQHECDHL 139
>gi|257485584|ref|ZP_05639625.1| peptide deformylase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|289627009|ref|ZP_06459963.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. NCPPB
3681]
gi|289647926|ref|ZP_06479269.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 2250]
gi|422583065|ref|ZP_16658194.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|422595418|ref|ZP_16669706.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|422606582|ref|ZP_16678590.1| peptide deformylase [Pseudomonas syringae pv. mori str. 301020]
gi|422682534|ref|ZP_16740799.1| peptide deformylase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|330867901|gb|EGH02610.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|330890232|gb|EGH22893.1| peptide deformylase [Pseudomonas syringae pv. mori str. 301020]
gi|330985723|gb|EGH83826.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|331011873|gb|EGH91929.1| peptide deformylase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
Length = 168
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E +V +NP + K +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSEP--MVFINPEIEKLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ V++ A D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVRVKALDRDGKPYELVAEGLLAICIQHECDHL 139
>gi|312143913|ref|YP_003995359.1| peptide deformylase [Halanaerobium hydrogeniformans]
gi|311904564|gb|ADQ15005.1| peptide deformylase [Halanaerobium hydrogeniformans]
Length = 150
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 65/107 (60%), Gaps = 5/107 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY +G+GL+APQVGI ++ V + GEG +IVL+NP + + + KMI EEGC
Sbjct: 35 MFETMYAEEGVGLAAPQVGILKRIAVIDI----GEGNKIVLINPEIIEENGKMI-MEEGC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG +V R + +K+ + + +G + AR QHE DHL
Sbjct: 90 LSIPGRTGEVIRSKEIKVSSLNRDGEEIEIIAEGFEARAIQHEIDHL 136
>gi|408673453|ref|YP_006873201.1| Peptide deformylase [Emticicia oligotrophica DSM 17448]
gi|387855077|gb|AFK03174.1| Peptide deformylase [Emticicia oligotrophica DSM 17448]
Length = 191
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 12/119 (10%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGERGEGEE----------IVLVNPRVNK 48
MF+ MY G+GL+APQ+G+++++ V + P+ E E +E V +N + +
Sbjct: 34 MFETMYAASGVGLAAPQIGMDIRVFVVDGTPINESAETDEDIDPSLIDFKKVFINAEIIE 93
Query: 49 YSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
S + YEEGCLS PG+ ADV RPE VKI D + + AR+ QHE+DH+
Sbjct: 94 ESGEEWAYEEGCLSIPGVRADVYRPEFVKIRYFDTDWNEHIEDYEGMAARIIQHEYDHI 152
>gi|317050727|ref|YP_004111843.1| peptide deformylase [Desulfurispirillum indicum S5]
gi|316945811|gb|ADU65287.1| peptide deformylase [Desulfurispirillum indicum S5]
Length = 171
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 66/108 (61%), Gaps = 2/108 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPV-GERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
MFD MY +G+GL+APQ+GI ++ V +P G+ E + +VL+NP++ + +EEG
Sbjct: 34 MFDTMYNANGVGLAAPQIGILRRICVLDPASGKEEEAQPLVLINPQILS-GEGLTTFEEG 92
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS PG + +++R E +++ D+ G + L A + QHE DHL
Sbjct: 93 CLSVPGYYGEIKRYERIQVQFNDLQGQEQTAILDGFTAIIAQHEMDHL 140
>gi|237801646|ref|ZP_04590107.1| peptide deformylase [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331024505|gb|EGI04561.1| peptide deformylase [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 168
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E +V +NP + K +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSEP--MVFINPEIEKLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ V++ A D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVRVKALDRDGKPYEMVAEGLLAICIQHECDHL 139
>gi|83941567|ref|ZP_00954029.1| peptide deformylase [Sulfitobacter sp. EE-36]
gi|83847387|gb|EAP85262.1| peptide deformylase [Sulfitobacter sp. EE-36]
Length = 153
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
M MY GIGL+APQ+G+ +L+V + V E GE +V+ NP + S+ + YEEG
Sbjct: 15 MLATMYDAPGIGLAAPQIGVMNRLIVMDCVKEEGETPRPLVMFNPEIIAASDALNTYEEG 74
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P ADV RP V + DI+G + + + L A QHE DHL
Sbjct: 75 CLSIPEQFADVTRPADVDVRWIDIDGNEQTETFTKLWATCVQHEIDHL 122
>gi|66043290|ref|YP_233131.1| peptide deformylase [Pseudomonas syringae pv. syringae B728a]
gi|422643832|ref|ZP_16706971.1| peptide deformylase [Pseudomonas syringae pv. maculicola str.
ES4326]
gi|422672606|ref|ZP_16731969.1| peptide deformylase [Pseudomonas syringae pv. aceris str. M302273]
gi|63253997|gb|AAY35093.1| peptide deformylase [Pseudomonas syringae pv. syringae B728a]
gi|330957385|gb|EGH57645.1| peptide deformylase [Pseudomonas syringae pv. maculicola str.
ES4326]
gi|330970343|gb|EGH70409.1| peptide deformylase [Pseudomonas syringae pv. aceris str. M302273]
Length = 168
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E +V +NP + K +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSEP--MVFINPEIEKLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ V++ A D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVRVKALDRDGKPYELVAEGLLAICIQHECDHL 139
>gi|319898269|ref|YP_004158362.1| polypeptide deformylase [Bartonella clarridgeiae 73]
gi|319402233|emb|CBI75766.1| polypeptide deformylase [Bartonella clarridgeiae 73]
Length = 171
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 63/107 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QVG+ ++++V + + +V++NP + SN+ Y EGC
Sbjct: 35 MLETMYNAQGIGLAAVQVGVPLRMLVLDISSKDAPKNPLVVINPEILWISNERNIYREGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP+ ++I RD G + + DL A QHE DHL
Sbjct: 95 LSIPEYYAEVERPKYLRICYRDREGKQAEIEADDLLATCLQHEIDHL 141
>gi|400287228|ref|ZP_10789260.1| peptide deformylase [Psychrobacter sp. PAMC 21119]
Length = 184
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QV ++QL+V + ++ + + V VNP+V + PYEEGC
Sbjct: 35 MIETMYDAQGIGLAASQVDRHIQLIVIDLSEDKNDPK--VFVNPKVTPLVEEKQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P ++ VERP V+I+A D NG + + L A QHE DHL
Sbjct: 93 LSVPEVYDSVERPNKVRIEALDENGEKIDEEVEGLLAVCIQHEMDHL 139
>gi|261217620|ref|ZP_05931901.1| peptide deformylase [Brucella ceti M13/05/1]
gi|261320497|ref|ZP_05959694.1| peptide deformylase [Brucella ceti M644/93/1]
gi|260922709|gb|EEX89277.1| peptide deformylase [Brucella ceti M13/05/1]
gi|261293187|gb|EEX96683.1| peptide deformylase [Brucella ceti M644/93/1]
Length = 175
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 63/107 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY GIGL+A QVG ++++V + E + VNP + + S+K YEEGC
Sbjct: 35 MFDTMYDALGIGLAAIQVGEPIRMLVIDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP +VK++ D +G S+ L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPATVKVNYFDADGKPQSMEADGLMATCLQHEIDHL 141
>gi|318040515|ref|ZP_07972471.1| peptide deformylase [Synechococcus sp. CB0101]
Length = 200
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 59/107 (55%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQ+G +QL+V + E + ++L+NP + + YEEGC
Sbjct: 61 MLVSMYAAKGIGLAAPQIGEPLQLLVIDLEIEDPKSPPLILINPEITSVGGSLCTYEEGC 120
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV RP V + RD G + L AR QHE DHL
Sbjct: 121 LSIPGVYLDVVRPSVVDVSYRDEMGRPKRLKADGLMARCIQHEMDHL 167
>gi|372278112|ref|ZP_09514148.1| peptide deformylase [Oceanicola sp. S124]
Length = 165
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 58/107 (54%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY G GL+ PQVG+ +L V + + GE +NP++ S++++ EEGC
Sbjct: 34 MFDTMYAAPGRGLAGPQVGVLKRLFVMDCTWKEGEKSPRACLNPQITWRSDELVTREEGC 93
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG+ A+V RP V + D N LS A QHE DHL
Sbjct: 94 LSIPGVLAEVARPAEVVMCWHDENWVEHEEKLSGFEATCAQHELDHL 140
>gi|259417507|ref|ZP_05741426.1| peptide deformylase [Silicibacter sp. TrichCH4B]
gi|259346413|gb|EEW58227.1| peptide deformylase [Silicibacter sp. TrichCH4B]
Length = 174
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE-RGEGEEIVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQ+GI +L+V + V E GE +V+ NPRV S++ YEEG
Sbjct: 34 MLETMYAAPGIGLAAPQIGILDRLIVLDCVKEGEGEARPLVMFNPRVIAASDETNVYEEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P +A+V RP+ V ++ D +G + + L A QHE DHL
Sbjct: 94 CLSIPEQYAEVTRPKVVDVEWLDRDGNLQTETFDGLWATCVQHEIDHL 141
>gi|406876921|gb|EKD26328.1| hypothetical protein ACD_79C01255G0005 [uncultured bacterium]
Length = 174
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 64/107 (59%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ +G+GL+APQVGI+ +++ + ERG VL+NP + K EEGC
Sbjct: 34 MIESMYQENGVGLAAPQVGISKRMIAIDAGEERGH--PFVLINPELIGTEGKATA-EEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFPGI+ +++R S+K+ D G S+S + L R HE DHL
Sbjct: 91 LSFPGIYGNIQRAASLKVKGIDAEGKEKSLSFTGLECRAILHEIDHL 137
>gi|319649622|ref|ZP_08003778.1| peptide deformylase [Bacillus sp. 2_A_57_CT2]
gi|317398784|gb|EFV79466.1| peptide deformylase [Bacillus sp. 2_A_57_CT2]
Length = 161
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 66/108 (61%), Gaps = 4/108 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M + DG+GL+APQ+G++ Q+ + + E G I ++NP + + +N EGC
Sbjct: 35 MYDTMIEFDGVGLAAPQIGLSRQIAIVDIDDEFGT---IEIINPEILE-TNGEQTGPEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LSFPG++ +V RPE VKI A+D G F++ D AR HE DHL
Sbjct: 91 LSFPGLYGEVTRPEYVKIKAQDRKGKYFTLEAEDFLARAILHEIDHLH 138
>gi|258541770|ref|YP_003187203.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus IFO 3283-01]
gi|384041691|ref|YP_005480435.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus IFO 3283-12]
gi|384050206|ref|YP_005477269.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus IFO 3283-03]
gi|384053316|ref|YP_005486410.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus IFO 3283-07]
gi|384056548|ref|YP_005489215.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus IFO 3283-22]
gi|384059189|ref|YP_005498317.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus IFO 3283-26]
gi|384062483|ref|YP_005483125.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus IFO 3283-32]
gi|384118559|ref|YP_005501183.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256632848|dbj|BAH98823.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus IFO 3283-01]
gi|256635905|dbj|BAI01874.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus IFO 3283-03]
gi|256638960|dbj|BAI04922.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus IFO 3283-07]
gi|256642014|dbj|BAI07969.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus IFO 3283-22]
gi|256645069|dbj|BAI11017.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus IFO 3283-26]
gi|256648124|dbj|BAI14065.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus IFO 3283-32]
gi|256651177|dbj|BAI17111.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256654168|dbj|BAI20095.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus IFO 3283-12]
Length = 186
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY+ GIGL+APQVG++ + ++ + +GE+ + IV++NP V + M EEGC
Sbjct: 53 MFSAMYQAPGIGLAAPQVGLSQRFILVD-LGEKDARDPIVMINPEVIAETEDMAVREEGC 111
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS P +A+V RPE +++ ++NG L A QHE DHL+
Sbjct: 112 LSLPNQYAEVVRPEKIRVRWNNVNGDVVEREAEGLLATCIQHEIDHLE 159
>gi|52842801|ref|YP_096600.1| peptide deformylase [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|54295432|ref|YP_127847.1| hypothetical protein lpl2518 [Legionella pneumophila str. Lens]
gi|54298584|ref|YP_124953.1| hypothetical protein lpp2648 [Legionella pneumophila str. Paris]
gi|148358671|ref|YP_001249878.1| peptide deformylase [Legionella pneumophila str. Corby]
gi|296108239|ref|YP_003619940.1| peptide deformylase [Legionella pneumophila 2300/99 Alcoy]
gi|378778490|ref|YP_005186929.1| peptide deformylase [Legionella pneumophila subsp. pneumophila ATCC
43290]
gi|397665185|ref|YP_006506723.1| peptide deformylase [Legionella pneumophila subsp. pneumophila]
gi|397668268|ref|YP_006509805.1| peptide deformylase [Legionella pneumophila subsp. pneumophila]
gi|52629912|gb|AAU28653.1| peptide deformylase [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|53752369|emb|CAH13801.1| hypothetical protein lpp2648 [Legionella pneumophila str. Paris]
gi|53755264|emb|CAH16758.1| hypothetical protein lpl2518 [Legionella pneumophila str. Lens]
gi|148280444|gb|ABQ54532.1| peptide deformylase [Legionella pneumophila str. Corby]
gi|295650141|gb|ADG25988.1| peptide deformylase [Legionella pneumophila 2300/99 Alcoy]
gi|307611474|emb|CBX01145.1| hypothetical protein LPW_28441 [Legionella pneumophila 130b]
gi|364509306|gb|AEW52830.1| peptide deformylase [Legionella pneumophila subsp. pneumophila ATCC
43290]
gi|395128596|emb|CCD06814.1| peptide deformylase [Legionella pneumophila subsp. pneumophila]
gi|395131679|emb|CCD09972.1| peptide deformylase [Legionella pneumophila subsp. pneumophila]
Length = 170
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 67/108 (62%), Gaps = 5/108 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPR-VNKYSNKMIPYEEG 59
MFD MY G+GL+APQ+G++++L V + VG++ E +IV+VNP V+ + K +EEG
Sbjct: 35 MFDTMYDARGVGLAAPQIGVSLRLSVIDIVGDKKE--QIVIVNPEIVSSHGEK--EFEEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS PG + V R E V + A D G F ++ L A QHE DH+
Sbjct: 91 CLSVPGAYDTVVRAEKVTVKALDRFGKPFEITGEGLLAECLQHEIDHM 138
>gi|255535832|ref|YP_003096203.1| peptide deformylase [Flavobacteriaceae bacterium 3519-10]
gi|255342028|gb|ACU08141.1| Peptide deformylase [Flavobacteriaceae bacterium 3519-10]
Length = 190
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 72/119 (60%), Gaps = 11/119 (9%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMV--FNPVGERGEGEEI---------VLVNPRVNKY 49
MFD M GIGL+APQVG++++L + +P+ E + +I VL+N ++ +
Sbjct: 34 MFDTMNSAHGIGLAAPQVGLDIRLFIVDLSPLAEDEDYADIADELKDFKKVLINAKILEE 93
Query: 50 SNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
+ + + EGCLS P I DV+R E++ I+ D N + + + SD+ ARV QHE+DH++
Sbjct: 94 TGEEWKFNEGCLSIPDIREDVKRKETIVIEYYDENFVKHTDTFSDMRARVIQHEYDHIE 152
>gi|254510174|ref|ZP_05122241.1| peptide deformylase [Rhodobacteraceae bacterium KLH11]
gi|221533885|gb|EEE36873.1| peptide deformylase [Rhodobacteraceae bacterium KLH11]
Length = 172
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQ+G+ +L+V + V E GE +V+ NP+V S+++ YEEG
Sbjct: 34 MLETMYDAPGIGLAAPQIGVLDRLIVVDCVKEEGETPRPLVMFNPQVIASSDEINVYEEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P +A+V RP +V + D +G + DL A QHE DHL
Sbjct: 94 CLSIPDQYAEVTRPRTVDVTWMDRDGNLQQETFDDLWATCVQHEIDHL 141
>gi|410678815|ref|YP_006931217.1| peptide deformylase [Borrelia afzelii HLJ01]
gi|408536203|gb|AFU74334.1| peptide deformylase [Borrelia afzelii HLJ01]
Length = 165
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 68/108 (62%), Gaps = 3/108 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M + G+GL+APQVG+++ + V V E + +V +NP + + S ++ Y+EGC
Sbjct: 32 MIELMDISGGVGLAAPQVGLDLSIFV---VRENKMAKPLVFINPVITETSYELNSYKEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG++ D+ RP+ + I+ D N F++ SD AR+ QHE DHL
Sbjct: 89 LSIPGVYYDLMRPKGIVINFYDENEKSFTIENSDFLARIIQHEMDHLN 136
>gi|421848416|ref|ZP_16281404.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus NBRC 101655]
gi|421852397|ref|ZP_16285086.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471]
gi|371460777|dbj|GAB26607.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus NBRC 101655]
gi|371479477|dbj|GAB30289.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471]
Length = 217
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY+ GIGL+APQVG++ + ++ + +GE+ + IV++NP V + M EEGC
Sbjct: 84 MFSAMYQAPGIGLAAPQVGLSQRFILVD-LGEKDARDPIVMINPEVIAETEDMAVREEGC 142
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS P +A+V RPE +++ ++NG L A QHE DHL+
Sbjct: 143 LSLPNQYAEVVRPEKIRVRWNNVNGDVVEREAEGLLATCIQHEIDHLE 190
>gi|157363555|ref|YP_001470322.1| peptide deformylase [Thermotoga lettingae TMO]
gi|167012066|sp|A8F524.1|DEF_THELT RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|157314159|gb|ABV33258.1| peptide deformylase [Thermotoga lettingae TMO]
Length = 171
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 6/108 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
+F+ MY TDGIGL+APQ+G+++++ V + +G+ V +NP + S + EEGC
Sbjct: 34 LFETMYATDGIGLAAPQIGVSLRIFVMD------DGKPRVFINPEIIYKSEEKEIAEEGC 87
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS P + DVER + V + + +G S D ARV QHE+DHLQ
Sbjct: 88 LSVPEVFEDVERSKEVTVRYMNEHGEEVEESFVDYSARVVQHEYDHLQ 135
>gi|111114886|ref|YP_709504.1| peptide deformylase [Borrelia afzelii PKo]
gi|384206566|ref|YP_005592287.1| peptide deformylase [Borrelia afzelii PKo]
gi|110890160|gb|ABH01328.1| polypeptide deformylase [Borrelia afzelii PKo]
gi|342856449|gb|AEL69297.1| peptide deformylase [Borrelia afzelii PKo]
Length = 165
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 68/108 (62%), Gaps = 3/108 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M + G+GL+APQVG+++ + V V E + +V +NP + + S ++ Y+EGC
Sbjct: 32 MIELMDISGGVGLAAPQVGLDLSIFV---VRENKMAKPLVFINPVITETSYELNSYKEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG++ D+ RP+ + I+ D N F++ SD AR+ QHE DHL
Sbjct: 89 LSIPGVYYDLMRPKGIVINFYDENEKSFTIENSDFLARIIQHEMDHLN 136
>gi|149201578|ref|ZP_01878552.1| peptide deformylase [Roseovarius sp. TM1035]
gi|149144626|gb|EDM32655.1| peptide deformylase [Roseovarius sp. TM1035]
Length = 172
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQVG+ +L+V + V + G IV++NP + +S + YEEG
Sbjct: 34 MLETMYDAPGIGLAAPQVGVMDRLIVLDCVKDEGATPRPIVMLNPEITAFSEEKSVYEEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P ADV RP V++ D++G L A QHE DHL
Sbjct: 94 CLSIPDQFADVTRPAEVEMRWMDLDGVEHQEGFGGLWATCVQHEIDHL 141
>gi|114770091|ref|ZP_01447629.1| peptide deformylase [Rhodobacterales bacterium HTCC2255]
gi|114548928|gb|EAU51811.1| peptide deformylase [alpha proteobacterium HTCC2255]
Length = 172
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 61/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+APQV + ++ V + + + +VL+NP + S ++ Y EGC
Sbjct: 35 MIETMYDAPGVGLAAPQVASDARIFVMDCTDSESDNQPLVLINPEIISVSEELNTYSEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + DVERP+ V++ DI+G + + L A QHE DHL
Sbjct: 95 LSLPDLFEDVERPKQVRMSFLDIDGKQHNELFDGLWATCAQHELDHL 141
>gi|325294662|ref|YP_004281176.1| peptide deformylase [Desulfurobacterium thermolithotrophum DSM
11699]
gi|325065110|gb|ADY73117.1| Peptide deformylase [Desulfurobacterium thermolithotrophum DSM
11699]
Length = 177
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 68/109 (62%), Gaps = 3/109 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN-PVGERGEG-EEIVLVNPRVNKYSNKMIPYEE 58
MF+ MYK G+GL+A Q+GI +++V + G+ +G E+I+L+NP + + + EE
Sbjct: 34 MFETMYKRGGVGLAANQIGILKKVVVIDLHSGKEKQGKEQIILINPEIVALEGEEVK-EE 92
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
GCLS PG++ V+R K+ A+++ G F + L AR FQHE DHL
Sbjct: 93 GCLSLPGLYKKVKRAAYAKVKAQNLKGEEFIIEGEGLLARAFQHEIDHL 141
>gi|440743505|ref|ZP_20922814.1| peptide deformylase [Pseudomonas syringae BRIP39023]
gi|298160851|gb|EFI01868.1| Peptide deformylase [Pseudomonas savastanoi pv. savastanoi NCPPB
3335]
gi|440375270|gb|ELQ11980.1| peptide deformylase [Pseudomonas syringae BRIP39023]
Length = 168
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 67/107 (62%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + K +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSEPR--VFINPEIEKLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ V++ A D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVRVKALDRDGKPYELVAEGLLAICIQHECDHL 139
>gi|319796457|ref|YP_004158097.1| peptide deformylase [Variovorax paradoxus EPS]
gi|315598920|gb|ADU39986.1| peptide deformylase [Variovorax paradoxus EPS]
Length = 172
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 68/113 (60%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +GIGL+A Q+ ++ +L+V + ER + IVL+NP + S++ + EEGC
Sbjct: 35 MLETMYDAEGIGLAATQIDVHERLVVIDVSEERNKP--IVLINPEITWASDEKVLNEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LS PGI+ V R SVK+ A D NG ++ L A QHE DHL +VFV
Sbjct: 93 LSVPGIYDGVMRSTSVKVQALDENGEMRTIEADGLLAVCIQHELDHLLGKVFV 145
>gi|222099700|ref|YP_002534268.1| peptide deformylase [Thermotoga neapolitana DSM 4359]
gi|254767608|sp|B9K7G9.1|DEF_THENN RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|221572090|gb|ACM22902.1| Peptide deformylase [Thermotoga neapolitana DSM 4359]
Length = 164
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 65/107 (60%), Gaps = 5/107 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY DG+GL+APQVGI+ + V + G G + ++NP + + S + EEGC
Sbjct: 33 MIETMYHYDGVGLAAPQVGISQRFFVMDV----GNGP-VAVINPEILEASPETEIAEEGC 87
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFP I ++ER + VK+ +++ G L PARVFQHEFDHL
Sbjct: 88 LSFPEIFVEIERSKRVKVRYQNVRGEFVEEELEGYPARVFQHEFDHL 134
>gi|402851222|ref|ZP_10899392.1| Peptide deformylase [Rhodovulum sp. PH10]
gi|402498514|gb|EJW10256.1| Peptide deformylase [Rhodovulum sp. PH10]
Length = 174
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 59/107 (55%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MYK GIGL+A QVG+ +++ + + E +NP++ S + YEEGC
Sbjct: 35 MFETMYKAPGIGLAAIQVGVAKRVVTLDVSRKDDEKNPKAFINPQIVWASEDLNVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P IH DVERPE VK+ D+ G L A QHE DHL
Sbjct: 95 LSIPDIHEDVERPEKVKVRYLDLEGRTREEDADGLFATCIQHEIDHL 141
>gi|149925345|ref|ZP_01913609.1| peptide deformylase [Limnobacter sp. MED105]
gi|149825462|gb|EDM84670.1| peptide deformylase [Limnobacter sp. MED105]
Length = 169
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 68/113 (60%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+A QV ++ +++V + ++ V +NP + S + YEEGC
Sbjct: 35 MAETMYDAPGVGLAATQVNVHKRIIVIDVTDDKSGL--TVFINPEIIDASKECKVYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LS PGI+ VERP++VK+ A+++ G F + +L A QHE DHL +VFV
Sbjct: 93 LSVPGIYEKVERPDTVKVRAQNVKGEWFEIDCDELLAVCIQHEIDHLNGKVFV 145
>gi|398926156|ref|ZP_10662317.1| peptide deformylase [Pseudomonas sp. GM48]
gi|398171193|gb|EJM59104.1| peptide deformylase [Pseudomonas sp. GM48]
Length = 168
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 67/107 (62%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRTEPR--VFINPELEPLTDEMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ VK+ A D +G + + DL A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQRVKVKALDRDGQPYELIAEDLLAVCIQHECDHL 139
>gi|195953865|ref|YP_002122155.1| peptide deformylase [Hydrogenobaculum sp. Y04AAS1]
gi|195933477|gb|ACG58177.1| peptide deformylase [Hydrogenobaculum sp. Y04AAS1]
Length = 171
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 66/109 (60%), Gaps = 3/109 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI--VLVNPRVNKYSNKMIPYEE 58
M + MYK DGIGL+A QV I + +MV + + E+ VL+NP V + I ++E
Sbjct: 33 MKETMYKNDGIGLAANQVNIPLSIMVIDTTSREDDQEKFKDVLINPTVLAKEGE-IKFKE 91
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
GCLSFPG+ +V R + + I A + ++LS LPA VFQHEFDHL
Sbjct: 92 GCLSFPGLQVEVIRAKEITIKAINECEEEVILNLSGLPAIVFQHEFDHL 140
>gi|421858975|ref|ZP_16291224.1| N-formylmethionyl-tRNA deformylase [Paenibacillus popilliae ATCC
14706]
gi|410831494|dbj|GAC41661.1| N-formylmethionyl-tRNA deformylase [Paenibacillus popilliae ATCC
14706]
Length = 160
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 64/107 (59%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY DG+GL+APQ+GI ++++ + E G I ++NP + K + + E GC
Sbjct: 35 MADTMYHADGVGLAAPQIGILKRVIIVDVGDEHGL---IEMINPIILKAEGEQLGTE-GC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV R E + + D +G F+V SD AR FQHE DHL
Sbjct: 91 LSIPGLNGDVRRYEHITVQGLDRHGKTFTVEASDFLARAFQHEIDHL 137
>gi|398828003|ref|ZP_10586205.1| peptide deformylase [Phyllobacterium sp. YR531]
gi|398218721|gb|EJN05223.1| peptide deformylase [Phyllobacterium sp. YR531]
Length = 176
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 61/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY GIGL+A Q+G +Q++V + E V +NP+V S++ YEEGC
Sbjct: 35 MLDTMYDAPGIGLAAIQIGTPLQMLVIDLAKEDEPKAPQVYINPKVLWSSDERNVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP+ V++ DI+G V L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPKQVRVSYLDIDGKAQEVDADGLLATCLQHEIDHL 141
>gi|363897054|ref|ZP_09323597.1| polypeptide deformylase [Oribacterium sp. ACB7]
gi|361959681|gb|EHL12957.1| polypeptide deformylase [Oribacterium sp. ACB7]
Length = 164
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ +G+GL+APQVGI QL V + G+G++ V +NP + +M EEGC
Sbjct: 35 MFETMYEANGVGLAAPQVGILKQLFVVDI----GDGKQYVAINPEITTLGEEMQTGEEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG V RP + + A + N + + S AR F HE DHLQ
Sbjct: 91 LSVPGKEGVVTRPMRILMKALNQNMEEYELEASGFLARAFMHENDHLQ 138
>gi|297182175|gb|ADI18346.1| N-formylmethionyl-tRNA deformylase [uncultured actinobacterium
HF4000_04C13]
Length = 180
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 69/112 (61%), Gaps = 6/112 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY+ GIGL+APQVG+ + V++ GEG ++L NPR+ + S+ +EEGC
Sbjct: 35 MFTTMYEAPGIGLAAPQVGVQKRFFVYD----HGEGAGVIL-NPRIIE-SDGEWTFEEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112
LS P + ++ RP+ V + D++G S+ ++ AR+FQHE DHL +L
Sbjct: 89 LSVPDLTWEITRPKQVHLVGVDLDGNEVSIEADEIEARLFQHEIDHLDGVLL 140
>gi|89092291|ref|ZP_01165245.1| peptide deformylase [Neptuniibacter caesariensis]
gi|89083379|gb|EAR62597.1| peptide deformylase [Oceanospirillum sp. MED92]
Length = 171
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV I+ +++ + ++ E +VL+NP ++ Y+EGC
Sbjct: 35 MFETMYAAPGIGLAATQVNIHKRIVTMDISDDQNEP--LVLINPEFEVIDEELHKYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + DV+RP+ +K+ A D NG + + L A QHE DHL
Sbjct: 93 LSVPGFYEDVKRPQKIKLKALDYNGEAYELEAEGLLAVCIQHELDHL 139
>gi|411118016|ref|ZP_11390397.1| peptide deformylase [Oscillatoriales cyanobacterium JSC-12]
gi|410711740|gb|EKQ69246.1| peptide deformylase [Oscillatoriales cyanobacterium JSC-12]
Length = 188
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQV + Q++V + ++L+NP + K S + +EGC
Sbjct: 48 MLQTMYSADGIGLAAPQVAVQKQIIVVDIEPNEAAKPPLILINPTIIKSSRDLSVTQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV+RP V++ +D G + + L A QHE DHL
Sbjct: 108 LSIPGVYLDVKRPSEVEVSFKDETGRPQRLKATGLLACCIQHEIDHL 154
>gi|418021014|ref|ZP_12660185.1| peptide deformylase [Candidatus Regiella insecticola R5.15]
gi|347603632|gb|EGY28426.1| peptide deformylase [Candidatus Regiella insecticola R5.15]
Length = 174
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 67/115 (58%), Gaps = 8/115 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-------IVLVNPRVNKYSNKM 53
MFD MY +GIGL+A QV I+ Q++V + +R + E +VL+NP + + S +
Sbjct: 35 MFDTMYAEEGIGLAATQVNIHKQIIVIHISDDRDQNERTEAHHCPLVLINPELLEESGET 94
Query: 54 IPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
EEGCLS PG+ A V R E VKI A D +G F++ L A QHE DHL+
Sbjct: 95 -GIEEGCLSIPGVRARVTRSEKVKIRALDRDGNSFTLEADGLLAICIQHEMDHLK 148
>gi|116515231|ref|YP_802860.1| hypothetical protein BCc_313 [Buchnera aphidicola BCc]
gi|122285373|sp|Q057D2.1|DEF_BUCCC RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|58384664|gb|AAW72679.1| polypeptide deformylase [Buchnera aphidicola (Cinara cedri)]
gi|116257085|gb|ABJ90767.1| polypeptide deformylase [Buchnera aphidicola BCc]
Length = 149
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY +GIGL+APQ+ I Q++V + + + E+VL+NP + K + K I EGC
Sbjct: 35 MFDTMYANNGIGLAAPQINILKQIIVISSL--KPTMSELVLINPVILKKNKKYINTIEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P A ++R +KI A + G F+++ L + QHE DHL
Sbjct: 93 LSIPKKTAKIKRSSCIKIQAINTYGKSFTLTAKSLLSICIQHEIDHL 139
>gi|335046992|ref|ZP_08540015.1| peptide deformylase [Oribacterium sp. oral taxon 108 str. F0425]
gi|333760778|gb|EGL38335.1| peptide deformylase [Oribacterium sp. oral taxon 108 str. F0425]
Length = 164
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ +G+GL+APQVGI QL V + G+G++ V +NP + +M EEGC
Sbjct: 35 MFETMYEANGVGLAAPQVGILKQLFVVDI----GDGKQYVAINPEITTLGEEMQTGEEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG V RP + + A + N + + S AR F HE DHLQ
Sbjct: 91 LSVPGKEGLVTRPMRILMKALNQNMEEYELEASGFLARAFMHENDHLQ 138
>gi|299771931|ref|YP_003733957.1| peptide deformylase [Acinetobacter oleivorans DR1]
gi|424741089|ref|ZP_18169450.1| peptide deformylase [Acinetobacter baumannii WC-141]
gi|298702019|gb|ADI92584.1| peptide deformylase [Acinetobacter oleivorans DR1]
gi|422945022|gb|EKU39993.1| peptide deformylase [Acinetobacter baumannii WC-141]
Length = 176
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QV ++QL+V + + E +V +NP++ + YEEGC
Sbjct: 35 MLETMYAAPGIGLAASQVDRHIQLIVID--LSEAKDEPLVFINPKITPLTEDKQQYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P I+ VERP VKI+A ++ G F + L A QHE DHL
Sbjct: 93 LSVPQIYDKVERPSRVKIEAINLEGQAFEIEADGLLAVCIQHEMDHL 139
>gi|21674275|ref|NP_662340.1| peptide deformylase [Chlorobium tepidum TLS]
gi|25452909|sp|Q8KCG7.1|DEF_CHLTE RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|21647445|gb|AAM72682.1| peptide deformylase [Chlorobium tepidum TLS]
Length = 187
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 66/109 (60%), Gaps = 3/109 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMV--FNPVGERGEGEEIVLVNPRVNKYSNKMIPYEE 58
MFD MYK GIGL+APQVG +++L+V + + E + + +V++NPR+ + + EE
Sbjct: 34 MFDTMYKAPGIGLAAPQVGHSLRLVVVDISTIKEYADFKPMVVINPRIVAVRGRSL-MEE 92
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
GCLS PGI +V RP ++ + RD + + ARV QHE DHL
Sbjct: 93 GCLSVPGIAGNVVRPSAITLHYRDEKFEEHTADFHSMMARVLQHEIDHL 141
>gi|444335725|ref|YP_007392094.1| peptide deformylase [Blattabacterium sp. (Blatta orientalis) str.
Tarazona]
gi|444300104|gb|AGD98341.1| peptide deformylase [Blattabacterium sp. (Blatta orientalis) str.
Tarazona]
Length = 167
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 65/113 (57%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI-----VLVNPRVNKYSNKMIP 55
MF+ ++K GIGL+APQ+G N++L + G++I V +N R+ K K
Sbjct: 36 MFETIHKVKGIGLAAPQIGKNIRLFIVETPYLLENGKDIDNYKEVFINARILKIHGKEYE 95
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
+ EGCLS PGI DV+R V I+ D N + +L + ARV QHE+DH++
Sbjct: 96 FNEGCLSLPGIMGDVKRKSYVSIEYYDHNWKKKKETLKGICARVIQHEYDHME 148
>gi|390956671|ref|YP_006420428.1| peptide deformylase [Terriglobus roseus DSM 18391]
gi|390411589|gb|AFL87093.1| peptide deformylase [Terriglobus roseus DSM 18391]
Length = 169
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 66/107 (61%), Gaps = 1/107 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY +GIGL+APQ+G++ +L + + + + + +VL+NP + + + + EEGC
Sbjct: 34 MFESMYAAEGIGLAAPQIGVSKRLFIVDLSFGKEKSDRLVLINPEIIQRDGRQVE-EEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P I V R +V+I A+D G F + +L +R FQHE DHL
Sbjct: 93 LSLPDIRDKVSRSFTVRIRAQDEYGKWFEMDGEELLSRAFQHELDHL 139
>gi|300775194|ref|ZP_07085056.1| peptide deformylase [Chryseobacterium gleum ATCC 35910]
gi|300505934|gb|EFK37070.1| peptide deformylase [Chryseobacterium gleum ATCC 35910]
Length = 190
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 73/119 (61%), Gaps = 11/119 (9%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGERGEGEEI---------VLVNPRVNKY 49
MF+ MY +GIGL+APQ+G++++L V + P+ E + E+I V +N ++ +
Sbjct: 34 MFETMYSANGIGLAAPQIGLDIRLFVIDVTPLAEDEDYEDIKDELAEFKKVFINAQILEE 93
Query: 50 SNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
S + + EGCLS P + DV+R ++ I+ D N + + + SD+ ARV QHE+DH++
Sbjct: 94 SGEEWKFNEGCLSIPDVREDVKRKGTIVIEYYDENFVKHTETFSDIRARVIQHEYDHIE 152
>gi|408787233|ref|ZP_11198964.1| peptide deformylase [Rhizobium lupini HPC(L)]
gi|424909300|ref|ZP_18332677.1| peptide deformylase [Rhizobium leguminosarum bv. viciae USDA 2370]
gi|392845331|gb|EJA97853.1| peptide deformylase [Rhizobium leguminosarum bv. viciae USDA 2370]
gi|408486864|gb|EKJ95187.1| peptide deformylase [Rhizobium lupini HPC(L)]
Length = 170
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 62/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +L+V + E E IV +NP + K S+ + YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRLLVIDVAREGEEKTPIVFINPEILKVSDDISTYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP S+ + +G + +V L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPASLTVQYVGRDGKQQTVEADGLLATCLQHEIDHL 141
>gi|346991574|ref|ZP_08859646.1| peptide deformylase [Ruegeria sp. TW15]
Length = 172
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQ+G+ +L+V + V E GE +V+ NP V S++ YEEG
Sbjct: 34 MLETMYDAPGIGLAAPQIGVLDRLIVVDCVKEEGEAPRPLVMFNPEVIASSDETNVYEEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P +A+V RP++V + D +G + DL A QHE DHL
Sbjct: 94 CLSIPEQYAEVTRPKTVDVTWLDRDGNLQQETFDDLWATCVQHEIDHL 141
>gi|56459130|ref|YP_154411.1| N-formylmethionyl-tRNA deformylase [Idiomarina loihiensis L2TR]
gi|81678352|sp|Q5QXI5.1|DEF_IDILO RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|56178140|gb|AAV80862.1| N-formylmethionyl-tRNA deformylase [Idiomarina loihiensis L2TR]
Length = 174
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 64/107 (59%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ G+GL+A QV ++ +L V + + E +V +NP + + + +EGC
Sbjct: 35 MFETMYEEQGVGLAATQVDVHRRLFVSD--CSEDQNEPLVFINPEITE-AEGHFKNDEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFPG++A VER E + + A D NG RFS S L A QHE DHL
Sbjct: 92 LSFPGVYAKVERAERITVTALDKNGERFSRSAEGLLAICIQHEIDHL 138
>gi|398818324|ref|ZP_10576916.1| peptide deformylase [Brevibacillus sp. BC25]
gi|398028092|gb|EJL21616.1| peptide deformylase [Brevibacillus sp. BC25]
Length = 158
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 64/107 (59%), Gaps = 5/107 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY DG+GL+APQVGI+ +++V + G+G I ++NP + ++ + Y EGC
Sbjct: 35 MADTMYDADGVGLAAPQVGISKRVIVMDC----GDGL-IEMINPEIVEHEGEQYDYPEGC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG+ DV R + +K+ D NG + DL +R QHE DHL
Sbjct: 90 LSIPGLQGDVRRHKWIKLRGHDRNGNVVELEADDLLSRCAQHEIDHL 136
>gi|340752594|ref|ZP_08689393.1| peptide deformylase [Fusobacterium sp. 2_1_31]
gi|229422396|gb|EEO37443.1| peptide deformylase [Fusobacterium sp. 2_1_31]
Length = 174
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 64/107 (59%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MYKTDGIGL+APQVG++ ++ V E G G+ L+NP + + + +EEGC
Sbjct: 36 MVETMYKTDGIGLAAPQVGVSKRVFVC----EDGTGKIRKLINPVIEPLTEETQEFEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PGI+ VERP+ V + + NG +L A V QHE DHL
Sbjct: 92 LSVPGIYKKVERPKKVMLKYLNENGEAVEEIAEELLAVVVQHENDHL 138
>gi|226313317|ref|YP_002773211.1| peptide deformylase [Brevibacillus brevis NBRC 100599]
gi|226096265|dbj|BAH44707.1| peptide deformylase [Brevibacillus brevis NBRC 100599]
Length = 158
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 64/107 (59%), Gaps = 5/107 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY DG+GL+APQVGI+ +++V + G+G I ++NP + ++ + Y EGC
Sbjct: 35 MADTMYDADGVGLAAPQVGISKRVIVMDC----GDGL-IEMINPEIIEHEGEQYDYPEGC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG+ DV R + +K+ D NG + DL +R QHE DHL
Sbjct: 90 LSIPGLQGDVRRHKWIKLRGHDRNGNVVELEADDLLSRCAQHEIDHL 136
>gi|254501503|ref|ZP_05113654.1| peptide deformylase [Labrenzia alexandrii DFL-11]
gi|222437574|gb|EEE44253.1| peptide deformylase [Labrenzia alexandrii DFL-11]
Length = 189
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 58/107 (54%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QVGI ++ V + E E +V +NP + Y +++ Y+EGC
Sbjct: 52 MLETMYDAPGIGLAASQVGILKRIFVLDVAKEDAPKEPMVFINPEIIWYGDELSVYQEGC 111
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + DVERP V + D GA + L A QHE DHL
Sbjct: 112 LSIPDYYEDVERPAEVAVKFMDREGAEQEIKADGLLATCIQHELDHL 158
>gi|119494635|ref|ZP_01624754.1| peptide deformylase [Lyngbya sp. PCC 8106]
gi|119452038|gb|EAW33257.1| peptide deformylase [Lyngbya sp. PCC 8106]
Length = 143
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 60/95 (63%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG+ QL+V + + ++L+NP + K S ++ P++EGC
Sbjct: 48 MLQTMYSADGIGLAAPQVGVQKQLIVIDCEPDNAATPPLILINPTIKKSSQEISPFQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDL 95
LS PG++ DV RPE +++ +D G ++ ++L
Sbjct: 108 LSIPGVYMDVTRPEVIEVSFKDETGRPRTIRANEL 142
>gi|357419717|ref|YP_004932709.1| peptide deformylase [Thermovirga lienii DSM 17291]
gi|355397183|gb|AER66612.1| peptide deformylase [Thermovirga lienii DSM 17291]
Length = 162
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 67/108 (62%), Gaps = 6/108 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVM K DG+GL+APQVG++ Q+ V + G++ VL+NP+V + S EEGC
Sbjct: 35 MFDVMRKEDGVGLAAPQVGVSKQIAVVSY-----GGQDYVLINPKVLESSGSE-RREEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PGI+ +VERP V ++A + G ++ AR F HE DHL+
Sbjct: 89 LSVPGIYEEVERPYRVVVEACNEKGKVERIAAEGFLARAFLHEIDHLR 136
>gi|262281295|ref|ZP_06059076.1| peptide deformylase 1 [Acinetobacter calcoaceticus RUH2202]
gi|262257121|gb|EEY75858.1| peptide deformylase 1 [Acinetobacter calcoaceticus RUH2202]
Length = 176
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QV ++QL+V + + E +V +NP++ + YEEGC
Sbjct: 35 MLETMYAAPGIGLAASQVDHHIQLIVID--LSEAKDEPLVFINPKITPLTEDKQQYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P I+ VERP VKI+A ++ G F + L A QHE DHL
Sbjct: 93 LSVPQIYDKVERPSRVKIEAINLEGQAFEIEADGLLAVCIQHEMDHL 139
>gi|257791461|ref|YP_003182067.1| peptide deformylase [Eggerthella lenta DSM 2243]
gi|257475358|gb|ACV55678.1| peptide deformylase [Eggerthella lenta DSM 2243]
Length = 183
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 59/107 (55%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MYK DG GL+APQ+G+ +L+V + E GE IVLVNP + + EGC
Sbjct: 36 MAKAMYKNDGCGLAAPQLGVAKRLVVIDCDQEEGEQNPIVLVNPVLVDTQGDPVVAGEGC 95
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PGI + RP ++ D++G + + DL R QHE DHL
Sbjct: 96 LSCPGITVPIARPPFARVRYFDLDGEEWEIEGDDLLGRCLQHELDHL 142
>gi|398869699|ref|ZP_10625057.1| peptide deformylase [Pseudomonas sp. GM74]
gi|398210548|gb|EJM97192.1| peptide deformylase [Pseudomonas sp. GM74]
Length = 168
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 66/107 (61%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRSEPR--VFINPEFEPLTDEMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ VK+ A D +G + + DL A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQRVKVKALDRDGQPYELIAEDLLAVCIQHECDHL 139
>gi|398947746|ref|ZP_10672382.1| peptide deformylase [Pseudomonas sp. GM33]
gi|426406931|ref|YP_007027030.1| peptide deformylase [Pseudomonas sp. UW4]
gi|169123281|gb|ACA47112.1| peptide deformylase [Pseudomonas putida]
gi|398161658|gb|EJM49885.1| peptide deformylase [Pseudomonas sp. GM33]
gi|426265148|gb|AFY17225.1| peptide deformylase [Pseudomonas sp. UW4]
Length = 168
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 66/107 (61%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + ++ M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRTEPR--VFINPELEPLTDDMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ VK+ A D +G + + DL A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQRVKVKALDRDGKPYELIAEDLLAVCIQHECDHL 139
>gi|15604081|ref|NP_220596.1| peptide deformylase [Rickettsia prowazekii str. Madrid E]
gi|383487053|ref|YP_005404733.1| peptide deformylase [Rickettsia prowazekii str. GvV257]
gi|383487629|ref|YP_005405308.1| peptide deformylase [Rickettsia prowazekii str. Chernikova]
gi|383488476|ref|YP_005406154.1| peptide deformylase [Rickettsia prowazekii str. Katsinyian]
gi|383489318|ref|YP_005406995.1| peptide deformylase [Rickettsia prowazekii str. Dachau]
gi|383499454|ref|YP_005412815.1| peptide deformylase [Rickettsia prowazekii str. BuV67-CWPP]
gi|383500293|ref|YP_005413653.1| peptide deformylase [Rickettsia prowazekii str. RpGvF24]
gi|386082041|ref|YP_005998618.1| Polypeptide deformylase [Rickettsia prowazekii str. Rp22]
gi|6225256|sp|Q9ZDV8.1|DEF_RICPR RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|3860772|emb|CAA14673.1| METHIONYL-TRNA DEFORMYLASE (def) [Rickettsia prowazekii str. Madrid
E]
gi|292571805|gb|ADE29720.1| Polypeptide deformylase [Rickettsia prowazekii str. Rp22]
gi|380757418|gb|AFE52655.1| peptide deformylase [Rickettsia prowazekii str. GvV257]
gi|380757990|gb|AFE53226.1| peptide deformylase [Rickettsia prowazekii str. RpGvF24]
gi|380760508|gb|AFE49030.1| peptide deformylase [Rickettsia prowazekii str. Chernikova]
gi|380761355|gb|AFE49876.1| peptide deformylase [Rickettsia prowazekii str. Katsinyian]
gi|380762200|gb|AFE50720.1| peptide deformylase [Rickettsia prowazekii str. BuV67-CWPP]
gi|380763041|gb|AFE51560.1| peptide deformylase [Rickettsia prowazekii str. Dachau]
Length = 175
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMV-----FNPVGERGEGEEIVLVNPRVNKYSNKMIP 55
M + MY DG GL+A QVGI ++++V ++PV + + +VNP + + S +++
Sbjct: 35 MLETMYNADGAGLAAVQVGILLRILVIDIKEYDPVERPKDFYPLFIVNPEIIEKSTELVT 94
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
EGC+S P +V RPESVKI D +G + +D ARV QHE+DHL+
Sbjct: 95 ANEGCISLPKQRIEVTRPESVKIRYLDYHGKSQELKANDWLARVIQHEYDHLE 147
>gi|365157092|ref|ZP_09353373.1| peptide deformylase [Bacillus smithii 7_3_47FAA]
gi|363625826|gb|EHL76837.1| peptide deformylase [Bacillus smithii 7_3_47FAA]
Length = 161
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + M + DG+GL+APQVGI++Q+ V + E G I LVNP + + E GC
Sbjct: 35 MHETMLEADGVGLAAPQVGIDLQVAVVDIGDENGM---IALVNPEILETKGTQTDIE-GC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG++ +V RP VK+ A+D G F + + AR QHE DHL
Sbjct: 91 LSIPGLYGEVTRPYYVKVKAKDWKGRTFIIEANGFLARAIQHEIDHLH 138
>gi|329118894|ref|ZP_08247589.1| peptide deformylase [Neisseria bacilliformis ATCC BAA-1200]
gi|327464922|gb|EGF11212.1| peptide deformylase [Neisseria bacilliformis ATCC BAA-1200]
Length = 167
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + ER E V +NP V + N YEEGC
Sbjct: 35 MFETMYEARGIGLAATQVDVHERVVVMDLSEERNEPR--VFINP-VITHKNGETTYEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PGI+ V R E+V ++A + NG +F++ L A QHE DHL VFV
Sbjct: 92 LSVPGIYDTVTRAETVTVEALNENGEKFTLEADGLLAICVQHELDHLMGIVFV 144
>gi|296120519|ref|YP_003628297.1| peptide deformylase [Planctomyces limnophilus DSM 3776]
gi|296012859|gb|ADG66098.1| peptide deformylase [Planctomyces limnophilus DSM 3776]
Length = 196
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 69/113 (61%), Gaps = 8/113 (7%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEG-EEIVLVNPRV-NKYSNKMIPYEE 58
MF++MY GIGL++ QV I Q + N G+ E EE+V +NP + N+ S+ EE
Sbjct: 34 MFELMYAAKGIGLASNQVAIPRQFFILNLTGDAAEKDEEVVFINPVILNRKSS--CEGEE 91
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLS----DLPARVFQHEFDHL 107
GCLSFPG++ V+R V I+A D++G F ++LS DL R QHE DHL
Sbjct: 92 GCLSFPGLYGPVKRAGEVLIEAFDLDGNCFEMTLSAKEDDLAVRAVQHESDHL 144
>gi|265985144|ref|ZP_06097879.1| peptide deformylase [Brucella sp. 83/13]
gi|306838492|ref|ZP_07471332.1| peptide deformylase [Brucella sp. NF 2653]
gi|264663736|gb|EEZ33997.1| peptide deformylase [Brucella sp. 83/13]
gi|306406424|gb|EFM62663.1| peptide deformylase [Brucella sp. NF 2653]
Length = 175
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 63/107 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY GIGL+A QVG ++++V + E + +NP + + S++ YEEGC
Sbjct: 35 MFDTMYDAPGIGLAAIQVGEPIRMLVIDLAKEGEPKAPHIFINPTIVQSSDERSTYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP +VK++ D +G S+ L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPATVKVNYFDADGKPQSMEADGLMATCLQHEIDHL 141
>gi|241202826|ref|YP_002973922.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240856716|gb|ACS54383.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM1325]
Length = 171
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 61/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E + V +NP V K S++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRMLVIDIAREGEEKQPQVFINPEVVKSSDERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP V + D NG +V L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPAVVSVKYLDRNGKEQTVEADGLLATCLQHEIDHL 141
>gi|418296812|ref|ZP_12908655.1| peptide deformylase [Agrobacterium tumefaciens CCNWGS0286]
gi|355538987|gb|EHH08229.1| peptide deformylase [Agrobacterium tumefaciens CCNWGS0286]
Length = 170
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 62/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E IV +NP + K S+ + YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVARRMLVIDVAREGEEKTPIVFINPEILKVSDDVSTYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP S+ + +G + +V L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPASLTVQYVGRDGKQQTVEADGLLATCLQHEIDHL 141
>gi|406901245|gb|EKD43962.1| Peptide deformylase [uncultured bacterium]
Length = 166
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 65/111 (58%), Gaps = 7/111 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMV----FNPVGERGEGEEIVLVNPRVNKYSNKMIPY 56
M + MY DG+G++APQV ++QL V F+P+ R E++VLVNP K S K
Sbjct: 37 MTETMYVKDGVGIAAPQVNESIQLCVIGKQFSPINIR---EDLVLVNPTWTKLSIKKAWD 93
Query: 57 EEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
EGCLS P ++ DV+R +K+ A + +G D PAR+ QHE DHL
Sbjct: 94 SEGCLSVPFVYGDVKRYVKIKVKALNQHGEPIEFVAQDFPARIVQHEVDHL 144
>gi|441502600|ref|ZP_20984610.1| Peptide deformylase [Photobacterium sp. AK15]
gi|441429778|gb|ELR67230.1| Peptide deformylase [Photobacterium sp. AK15]
Length = 167
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 65/109 (59%), Gaps = 4/109 (3%)
Query: 1 MFDVMYKTD-GIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
M D MY TD GIGL+APQVG + ++V + ER + ++L+NP + N + +EG
Sbjct: 34 MLDTMYHTDNGIGLAAPQVGRSEAIVVIDISPERND--PLILINPEIVSGENP-VSGQEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
CLS PG +ADVER E V I A D G +F + D A QHE DHL+
Sbjct: 91 CLSVPGYYADVERFEKVTISAMDREGNKFEIERDDFLAIAMQHEIDHLK 139
>gi|385232665|ref|YP_005794007.1| peptide deformylase [Ketogulonicigenium vulgare WSH-001]
gi|343461576|gb|AEM40011.1| Peptide deformylase [Ketogulonicigenium vulgare WSH-001]
Length = 186
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 62/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+ PQVG +++V + + + +V+VNP++ S+ YEEGC
Sbjct: 48 MLETMYDAPGIGLAGPQVGQLQRIIVLDCAKDPDAPQPLVMVNPQIVWSSDDRSVYEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP SVK+ D+NG + L A QHE DHL
Sbjct: 108 LSIPDQYAEVERPASVKVRWLDLNGNEQDREMEGLWATCVQHEIDHL 154
>gi|381179529|ref|ZP_09888380.1| peptide deformylase [Treponema saccharophilum DSM 2985]
gi|380768578|gb|EIC02566.1| peptide deformylase [Treponema saccharophilum DSM 2985]
Length = 193
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 63/107 (58%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ M + +G+GL+APQVGI+ + V + + V +NP++ S +M YEEGC
Sbjct: 36 MFETMIEANGVGLAAPQVGISKRFFVVMS----DDDVKRVFINPQIVSTSAEMCDYEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + ++ RP V + A D G F++ L AR+ QHE DHL
Sbjct: 92 LSLPGFNENIRRPAKVTVQALDEKGKPFTLEAEGLLARIIQHENDHL 138
>gi|398920310|ref|ZP_10659227.1| peptide deformylase [Pseudomonas sp. GM49]
gi|398168319|gb|EJM56340.1| peptide deformylase [Pseudomonas sp. GM49]
Length = 168
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 66/107 (61%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRTEPR--VFINPEFEPLTDEMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ VK+ A D +G + + DL A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQRVKVKALDRDGQPYELIAEDLLAVCIQHECDHL 139
>gi|262091759|gb|ACY25348.1| peptide deformylase [uncultured actinobacterium]
Length = 180
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 68/108 (62%), Gaps = 6/108 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF VMY+ G+GL+ PQ+G+ Q+ V++ + + V++NP++ + S + + Y+EGC
Sbjct: 41 MFRVMYQAPGLGLAGPQIGVQKQIFVYDV-----DDDPQVIINPKIVESSGEWV-YDEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG++ ++ RP+ V + + G + +L AR+FQHE DHLQ
Sbjct: 95 LSIPGLYVEMLRPKKVLVSGFTLEGDEVQIEADELLARLFQHEIDHLQ 142
>gi|418938199|ref|ZP_13491761.1| Peptide deformylase [Rhizobium sp. PDO1-076]
gi|375055200|gb|EHS51473.1| Peptide deformylase [Rhizobium sp. PDO1-076]
Length = 170
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 62/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ GIGL+A QVG+ +++V + E E E +V +NP + + S++ YEEGC
Sbjct: 35 MLETMYEAPGIGLAAIQVGVARRMLVIDISKEGDEREPLVFINPEIVRSSDERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP ++ + + D G L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPAAITVKSLDREGRETLTEADGLLATCLQHEIDHL 141
>gi|422346414|ref|ZP_16427328.1| peptide deformylase 1 [Clostridium perfringens WAL-14572]
gi|373225959|gb|EHP48286.1| peptide deformylase 1 [Clostridium perfringens WAL-14572]
Length = 147
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 64/108 (59%), Gaps = 4/108 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ +G+GL+APQVGI ++ V + + G V +NP + + S + EEGC
Sbjct: 35 MIETMYENNGVGLAAPQVGILKRIFVVDAMDGAGSR---VFINPEILEKSGEQTD-EEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG H V+R +KI A D+NG F + + AR QHE+DHL+
Sbjct: 91 LSLPGRHKPVKRANKIKIKALDVNGNEFVLDAEEFLARAIQHEYDHLE 138
>gi|375335510|ref|ZP_09776854.1| peptide deformylase [Succinivibrionaceae bacterium WG-1]
Length = 175
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPR-VNKYSNKMIPYEEG 59
MF+ MY +GIGL+APQ+G+ Q++V N G + E+VL+NP +NK I EG
Sbjct: 35 MFETMYAEEGIGLAAPQIGLLKQIVVINVEGIDNKEAELVLINPEIINKEGETGI--NEG 92
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
CLS P + A V+R E + + A++I+G F+ L A QHE DHL
Sbjct: 93 CLSVPELRAFVKRAEKITVKAQNIDGETFTKEADGLLAICMQHEIDHLH 141
>gi|419842272|ref|ZP_14365623.1| peptide deformylase [Fusobacterium necrophorum subsp. funduliforme
ATCC 51357]
gi|386902590|gb|EIJ67428.1| peptide deformylase [Fusobacterium necrophorum subsp. funduliforme
ATCC 51357]
Length = 173
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY DG+GL+APQVGI++++ V + +G E ++NP + + + I EEGC
Sbjct: 34 MVETMYARDGVGLAAPQVGISLRMFVCD-IGSPEESNVKKIINPLITPLTEETISVEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PGI+ VER +K++ ++ G L PA V QHE+DHL+
Sbjct: 93 LSIPGIYKKVERIAKLKLEYQNEQGEFVEEILEGFPAIVVQHEYDHLE 140
>gi|126726109|ref|ZP_01741951.1| peptide deformylase [Rhodobacterales bacterium HTCC2150]
gi|126705313|gb|EBA04404.1| peptide deformylase [Rhodobacterales bacterium HTCC2150]
Length = 159
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERG-EGEEIVLVNPRVNKYSNKMIPYEEG 59
M MY+ GIGL+APQ+G+ +L+V + V E G + + + NP + S+++ Y+EG
Sbjct: 22 MLATMYEAPGIGLAAPQIGVLERLIVLDCVKEEGADPRPVAMFNPEITASSDELSVYDEG 81
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P I+A+V RP V + ++GA + + L A QHE DHL
Sbjct: 82 CLSIPEIYAEVTRPAEVSVRWMGLDGAEHNETFDGLWATCVQHEIDHL 129
>gi|260426170|ref|ZP_05780149.1| peptide deformylase [Citreicella sp. SE45]
gi|260420662|gb|EEX13913.1| peptide deformylase [Citreicella sp. SE45]
Length = 176
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 66/110 (60%), Gaps = 4/110 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE---IVLVNPRVNKYSNKMIPYE 57
M + MY GIGL+APQVGI +L+V + ++ GE +V++NPR+ S++ YE
Sbjct: 37 MLETMYDAPGIGLAAPQVGILHRLIVLD-CAKQDNGETPRPLVMINPRILASSDERSVYE 95
Query: 58 EGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
EGCLS P +ADVERP+ V+++ D +G L A QHE DHL
Sbjct: 96 EGCLSIPDQYADVERPKMVEVEWLDRDGKLQKEEFDGLWATCVQHEIDHL 145
>gi|110799951|ref|YP_696430.1| peptide deformylase [Clostridium perfringens ATCC 13124]
gi|168210623|ref|ZP_02636248.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626]
gi|168214221|ref|ZP_02639846.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969]
gi|168217031|ref|ZP_02642656.1| polypeptide deformylase [Clostridium perfringens NCTC 8239]
gi|169342685|ref|ZP_02863726.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495]
gi|110674598|gb|ABG83585.1| peptide deformylase [Clostridium perfringens ATCC 13124]
gi|169299191|gb|EDS81261.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495]
gi|170711284|gb|EDT23466.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626]
gi|170714299|gb|EDT26481.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969]
gi|182380902|gb|EDT78381.1| polypeptide deformylase [Clostridium perfringens NCTC 8239]
Length = 147
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 64/108 (59%), Gaps = 4/108 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ +G+GL+APQVGI ++ V + + G V +NP + + S + EEGC
Sbjct: 35 MIETMYENNGVGLAAPQVGILKRIFVVDAMDGAGSR---VFINPEILEKSGEQTD-EEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG H V+R +KI A D+NG F + + AR QHE+DHL+
Sbjct: 91 LSLPGRHKPVKRANKIKIKALDVNGNEFVLDAEEFLARAIQHEYDHLE 138
>gi|407794102|ref|ZP_11141131.1| N-formylmethionyl-tRNA deformylase [Idiomarina xiamenensis 10-D-4]
gi|407213526|gb|EKE83382.1| N-formylmethionyl-tRNA deformylase [Idiomarina xiamenensis 10-D-4]
Length = 172
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 64/107 (59%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY++ G+GL+A QV ++ +L V + + E +V +NP + + S EEGC
Sbjct: 35 MFETMYESQGVGLAATQVDVHKRLFVAD--CSEDQNEPLVFINPEITE-SEGDFTNEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFPG++A VER V + A D +G RFS + L A QHE DHL
Sbjct: 92 LSFPGVYAKVERASKVTVSALDKHGERFSKTAEGLLAICIQHEIDHL 138
>gi|384107655|ref|ZP_10008553.1| peptide deformylase [Treponema sp. JC4]
gi|383870511|gb|EID86113.1| peptide deformylase [Treponema sp. JC4]
Length = 191
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 64/107 (59%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ M + DG+GL+ PQVG N+++ V + V +NP++ K S ++ Y+EGC
Sbjct: 34 MFETMIEADGVGLAGPQVGKNLRMFVLMA----DDDVRRVFINPQIIKTSEELGDYDEGC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P ++ + RP V + A + NG F++ L AR+ QHE+DHL
Sbjct: 90 LSIPQVYETIRRPVKVTVQALNENGKPFTLDADGLLARIIQHEYDHL 136
>gi|385264698|ref|ZP_10042785.1| peptide deformylase [Bacillus sp. 5B6]
gi|385149194|gb|EIF13131.1| peptide deformylase [Bacillus sp. 5B6]
Length = 165
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 64/107 (59%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M + DG+GL+APQ+GI + V + +GE E I LVNP + + S + E GC
Sbjct: 40 MYDTMLEMDGVGLAAPQIGILKRAAVVD-IGE--ESGRIDLVNPVILEKSGEQTGVE-GC 95
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFPG++ DV RP+ VK+ A D G F + AR QHE DHL
Sbjct: 96 LSFPGVYGDVTRPDYVKVKAHDRKGKPFILEAEGFLARAVQHEMDHL 142
>gi|50083493|ref|YP_045003.1| peptide deformylase [Acinetobacter sp. ADP1]
gi|49529469|emb|CAG67181.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
binds Zn(II)) [Acinetobacter sp. ADP1]
Length = 174
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ GIGL+A QV ++QL+V + E+ + +V +NP++ + + PYEEGC
Sbjct: 35 MLETMYEAPGIGLAATQVDRHIQLIVMDLSEEKDQP--MVFINPKITPLTEETQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P I+ V R VKI+A ++N F + L A QHE DHL
Sbjct: 93 LSVPQIYDKVNRTSRVKIEAINLNDEAFEIEADGLLAVCIQHEMDHL 139
>gi|168207271|ref|ZP_02633276.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987]
gi|170661355|gb|EDT14038.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987]
Length = 147
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 64/108 (59%), Gaps = 4/108 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ +G+GL+APQVGI ++ V + + G V +NP + + S + EEGC
Sbjct: 35 MIETMYENNGVGLAAPQVGILKRIFVVDAMDGAGSR---VFINPEILEKSGEQTD-EEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG H V+R +KI A D+NG F + + AR QHE+DHL+
Sbjct: 91 LSLPGRHKPVKRANKIKIKALDVNGNEFVLDAEEFLARAIQHEYDHLE 138
>gi|417103872|ref|ZP_11961221.1| peptide deformylase protein [Rhizobium etli CNPAF512]
gi|327191106|gb|EGE58154.1| peptide deformylase protein [Rhizobium etli CNPAF512]
Length = 171
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 62/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E + V +NP + K S++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRMLVIDVSREGEEKQPQVFINPEIVKSSDERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP V ++ D NG +V L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPAVVSVEYLDRNGKEQTVEADGLLATCLQHEIDHL 141
>gi|310815113|ref|YP_003963077.1| peptide deformylase [Ketogulonicigenium vulgare Y25]
gi|308753848|gb|ADO41777.1| peptide deformylase [Ketogulonicigenium vulgare Y25]
Length = 173
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 62/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+ PQVG +++V + + + +V+VNP++ S+ YEEGC
Sbjct: 35 MLETMYDAPGIGLAGPQVGQLQRIIVLDCAKDPDAPQPLVMVNPQIVWSSDDRSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP SVK+ D+NG + L A QHE DHL
Sbjct: 95 LSIPDQYAEVERPASVKVRWLDLNGNEQDREMEGLWATCVQHEIDHL 141
>gi|239818071|ref|YP_002946981.1| peptide deformylase [Variovorax paradoxus S110]
gi|239804648|gb|ACS21715.1| peptide deformylase [Variovorax paradoxus S110]
Length = 173
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 67/113 (59%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QV ++ +L+V + ER E +VL+NP + S++ + EEGC
Sbjct: 35 MLETMYDASGIGLAATQVDVHERLVVIDVSEERNE--PLVLINPEIIWASDEKVLNEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LS PGI+ V R SVK+ A D NG ++ L A QHE DHL +VFV
Sbjct: 93 LSVPGIYDGVMRSTSVKVQALDENGELRTIEAEGLLAVCIQHELDHLLGKVFV 145
>gi|407792151|ref|ZP_11139222.1| peptide deformylase [Gallaecimonas xiamenensis 3-C-1]
gi|407198008|gb|EKE68053.1| peptide deformylase [Gallaecimonas xiamenensis 3-C-1]
Length = 173
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY +GIGL+A QV +++Q++V + ER E V +NP + + K + +EGC
Sbjct: 35 MFDTMYDENGIGLAATQVDVHLQVVVMDISEERNERR--VFINPEIIEKDGKAMG-DEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG +A+VER E +K+ A D G F + L A QHE DHL+
Sbjct: 92 LSVPGSYAEVERAEHIKVKALDEQGQEFILEAEGLLAVCVQHELDHLK 139
>gi|374339701|ref|YP_005096437.1| peptide deformylase [Marinitoga piezophila KA3]
gi|372101235|gb|AEX85139.1| peptide deformylase [Marinitoga piezophila KA3]
Length = 176
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 69/109 (63%), Gaps = 7/109 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI-VLVNPRVNKYSNKMIPYEEG 59
M ++MY+ DG+GL+APQ+GI+ + V + +G ++ ++NP + K+ + + +EEG
Sbjct: 34 MAEMMYREDGVGLAAPQIGISRRFFVMD------DGNKLRKVINPEIIKFLGEEVSFEEG 87
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
CLS P I +V+RPE + + + NG L + AR+FQHE+DHL+
Sbjct: 88 CLSIPKIFLNVKRPEGIIVKYTNENGEIVEEELHEYTARIFQHEYDHLE 136
>gi|294782531|ref|ZP_06747857.1| peptide deformylase [Fusobacterium sp. 1_1_41FAA]
gi|294481172|gb|EFG28947.1| peptide deformylase [Fusobacterium sp. 1_1_41FAA]
Length = 174
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 65/107 (60%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+TDGIGL+APQVG++ ++ V E G + ++NP + + + +EEGC
Sbjct: 36 MVETMYETDGIGLAAPQVGVSKRVFVC----EDGNRKIRKIINPVIEPLTEETQEFEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PGI+ VERP+ VK++ + NG DL A V QHE DHL
Sbjct: 92 LSVPGIYKKVERPKKVKLNYLNENGETVEEIAEDLLAVVVQHENDHL 138
>gi|340755493|ref|ZP_08692177.1| peptide deformylase [Fusobacterium sp. D12]
gi|421500784|ref|ZP_15947775.1| peptide deformylase [Fusobacterium necrophorum subsp. funduliforme
Fnf 1007]
gi|313687280|gb|EFS24115.1| peptide deformylase [Fusobacterium sp. D12]
gi|402267139|gb|EJU16537.1| peptide deformylase [Fusobacterium necrophorum subsp. funduliforme
Fnf 1007]
Length = 173
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY DG+GL+APQVGI++++ V + +G E ++NP + + + I EEGC
Sbjct: 34 MVETMYARDGVGLAAPQVGISLRMFVCD-IGTPEESNVKKIINPLITPLTEETISVEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PGI+ VER +K++ ++ G L PA V QHE+DHL+
Sbjct: 93 LSIPGIYKKVERIAKLKLEYQNEQGEFVEEILEGFPAIVVQHEYDHLE 140
>gi|372278111|ref|ZP_09514147.1| peptide deformylase [Oceanicola sp. S124]
Length = 172
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQ+GI +L+V + V E GE +V+ NP + S++ YEEG
Sbjct: 34 MLETMYDAPGIGLAAPQIGILQRLIVLDCVKEDGEAPRPLVMFNPEIVSASDETSSYEEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
CLS P +A+V RP V + D +G + L A QHE DHL+
Sbjct: 94 CLSIPEQYAEVTRPAEVTVRWMDRDGNAREETFDKLWATCVQHEIDHLE 142
>gi|379009513|ref|YP_005267326.1| peptide deformylase [Wigglesworthia glossinidia endosymbiont of
Glossina morsitans morsitans (Yale colony)]
gi|375158037|gb|AFA41103.1| peptide deformylase [Wigglesworthia glossinidia endosymbiont of
Glossina morsitans morsitans (Yale colony)]
Length = 151
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 70/108 (64%), Gaps = 5/108 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPR-VNKYSNKMIPYEEG 59
MF+ MY +GIGL+A QV I+ +++V + + + E+IVL+NP+ +NKY +++ +EEG
Sbjct: 35 MFETMYLQEGIGLAATQVDIHKRIIVIDT--SKQKNEKIVLINPKFLNKYGSEI--FEEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P + V R +VKI+A + G +F + + L + QHE DHL
Sbjct: 91 CLSIPNMRVYVSRSSTVKIEAFNYYGKKFFLKATGLLSSCIQHEMDHL 138
>gi|400406431|ref|YP_006589179.1| peptide deformylase [secondary endosymbiont of Heteropsylla cubana]
gi|400364684|gb|AFP85751.1| peptide deformylase [secondary endosymbiont of Heteropsylla cubana]
Length = 175
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 67/107 (62%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY +GIGL+A QV I+ QL++ + ++ + + +VL+NP + +YS K I +EGC
Sbjct: 35 MFETMYSKNGIGLAATQVDIH-QLIIVIDISKK-QDQRLVLINPTILEYSGK-ISTKEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P ++ V R E VK+ A D G F + +DL A QHE DHL
Sbjct: 92 LSIPYQYSSVSRSEKVKVKALDYYGNNFYLEANDLLAICIQHEMDHL 138
>gi|395760200|ref|ZP_10440869.1| peptide deformylase [Janthinobacterium lividum PAMC 25724]
Length = 180
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 68/113 (60%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ G+GL+A QV ++Q+MV + E+ + + VL+NP + S + Y+EGC
Sbjct: 35 MAETMYEAPGVGLAASQVDEHIQMMVIDITEEKNQLQ--VLINPEITWASEEKQIYDEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LS PG++ VERP +K+ A D +G +F L A QHE DH+ +VFV
Sbjct: 93 LSVPGVYDGVERPARIKVRALDRHGKQFEQEADGLLAVCIQHEMDHMLGKVFV 145
>gi|452855519|ref|YP_007497202.1| peptide deformylase [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
gi|452079779|emb|CCP21536.1| peptide deformylase [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
Length = 165
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 64/107 (59%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M + DG+GL+APQ+GI + V + +GE E I LVNP + + S + E GC
Sbjct: 40 MYDTMLEMDGVGLAAPQIGILKRAAVVD-IGE--ESGRIDLVNPVILEKSGEQTGVE-GC 95
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFPG++ DV RP+ VK+ A D G F + AR QHE DHL
Sbjct: 96 LSFPGVYGDVTRPDYVKVKAYDRKGKPFVLEAEGFLARAVQHEIDHL 142
>gi|333898252|ref|YP_004472125.1| peptide deformylase [Pseudomonas fulva 12-X]
gi|333113517|gb|AEF20031.1| Peptide deformylase [Pseudomonas fulva 12-X]
Length = 168
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 66/107 (61%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++ +++V + ++ E +V +NP +++M Y+EGC
Sbjct: 35 MFETMYDAPGIGLAATQVNVHKRVVVMDLSEDKSEP--LVFINPEFESLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ VKI+A D +G F + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVKINALDRDGKPFEMIAEGLLAVCIQHECDHL 139
>gi|451940123|ref|YP_007460761.1| polypeptide deformylase [Bartonella australis Aust/NH1]
gi|451899510|gb|AGF73973.1| polypeptide deformylase [Bartonella australis Aust/NH1]
Length = 176
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 63/107 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+A QV + ++++V + + +V++NP + S++ Y+EGC
Sbjct: 35 MLETMYDAQGVGLAAIQVAVPLRMLVVDVARQDSSQNPLVIINPEILWLSDERSVYKEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP+ +++ RD G + + DL A QHE DHL
Sbjct: 95 LSIPDYYAEVERPKCLRVRYRDREGKQKEIEADDLLATCLQHEIDHL 141
>gi|387898151|ref|YP_006328447.1| formylmethionine deformylase [Bacillus amyloliquefaciens Y2]
gi|387172261|gb|AFJ61722.1| formylmethionine deformylase [Bacillus amyloliquefaciens Y2]
Length = 165
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 64/107 (59%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M + DG+GL+APQ+GI + V + +GE E I LVNP + + S + E GC
Sbjct: 40 MYDTMLEMDGVGLAAPQIGILKRAAVVD-IGE--ESGRIDLVNPVILEKSGEQTGVE-GC 95
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFPG++ DV RP+ VK+ A D G F + AR QHE DHL
Sbjct: 96 LSFPGVYGDVTRPDYVKVKAYDRKGKPFILEAEGFLARAVQHEMDHL 142
>gi|410456989|ref|ZP_11310836.1| peptide deformylase [Bacillus bataviensis LMG 21833]
gi|409926963|gb|EKN64114.1| peptide deformylase [Bacillus bataviensis LMG 21833]
Length = 161
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 65/107 (60%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M + DG+GL+APQ+G++ ++ + + RG I ++NPRV + + + EGC
Sbjct: 35 MYDTMIEYDGVGLAAPQIGLDARIAIVDIDDVRGT---IEMINPRVIETTGEQTG-PEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFP + +V RP VKI+A D G ++S+ AR QHE DHL
Sbjct: 91 LSFPNLFGEVTRPNYVKIEAYDRKGRKYSLEAEGFLARAIQHEIDHL 137
>gi|407799665|ref|ZP_11146543.1| Peptide deformylase [Oceaniovalibus guishaninsula JLT2003]
gi|407058142|gb|EKE44100.1| Peptide deformylase [Oceaniovalibus guishaninsula JLT2003]
Length = 209
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQVG N +L+V + + ++ +VL+NP + S++ YEEG
Sbjct: 68 MLETMYDAPGIGLAAPQVGSNARLLVMDCIKDKDAAPRPMVLLNPAIEWTSDEDSTYEEG 127
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P ADV RP V + ++G + S L A QHE DHL
Sbjct: 128 CLSIPDQFADVTRPAEVDVSWMGLDGQQHRERFSGLWATCVQHEIDHL 175
>gi|224011581|ref|XP_002295565.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|209583596|gb|ACI64282.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 192
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 66/110 (60%), Gaps = 4/110 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M +MY++ G+GL+APQ+G+N + V+NP + E ++ NP++ KYS ++I +EGC
Sbjct: 45 MLMIMYESKGVGLAAPQIGLNENVFVYNPSDSK--NMERIVCNPKITKYSEEVIVEQEGC 102
Query: 61 LSFPG--IHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS + V R ++ + + G + L D ARVFQHE+DHL+
Sbjct: 103 LSMRSDEVAGQVARSAWIECEYENEEGQKVRRRLKDFEARVFQHEYDHLK 152
>gi|308234578|ref|ZP_07665315.1| peptide deformylase [Atopobium vaginae DSM 15829]
Length = 183
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 67/113 (59%), Gaps = 8/113 (7%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE---IVLVNPRVNKYSNKMIPYE 57
MF+VMY TDG GL+APQ+G N++L+V + E GEG VLVNP++
Sbjct: 39 MFEVMYATDGCGLAAPQIGKNIRLVVID--CEWGEGSRKKPYVLVNPKIVVADEADRSMS 96
Query: 58 EGCLSFPGIHADVERPESVKIDARDING--ARFSVSLSDLPARVFQHEFDHLQ 108
EGCLS+PGI V+RP V +A +++G R+ +L A QHE DHLQ
Sbjct: 97 EGCLSYPGILVPVKRPSHVICEALNLDGDLIRYEAR-GNLLAACLQHECDHLQ 148
>gi|328944367|ref|ZP_08241830.1| peptide deformylase [Atopobium vaginae DSM 15829]
gi|327491082|gb|EGF22858.1| peptide deformylase [Atopobium vaginae DSM 15829]
Length = 187
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 68/113 (60%), Gaps = 8/113 (7%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE---IVLVNPRVNKYSNKMIPYE 57
MF+VMY TDG GL+APQ+G N++L+V + E GEG VLVNP++
Sbjct: 43 MFEVMYATDGCGLAAPQIGKNIRLVVID--CEWGEGSRKKPYVLVNPKIVVADEADRSMS 100
Query: 58 EGCLSFPGIHADVERPESVKIDARDING--ARFSVSLSDLPARVFQHEFDHLQ 108
EGCLS+PGI V+RP V +A +++G R+ + +L A QHE DHLQ
Sbjct: 101 EGCLSYPGILVPVKRPSHVICEALNLDGDLIRYE-ARGNLLAACLQHECDHLQ 152
>gi|395767509|ref|ZP_10448042.1| peptide deformylase [Bartonella doshiae NCTC 12862]
gi|395413872|gb|EJF80325.1| peptide deformylase [Bartonella doshiae NCTC 12862]
Length = 177
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 64/107 (59%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY GIGL+A Q+GI ++++V + G + +V++NP + S++ Y+EGC
Sbjct: 35 MLDTMYDARGIGLAAIQIGIPLRMLVIDVSGNDTTKDPLVIINPEILWLSDERNLYKEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP+ + + ++ G + + DL A QHE DHL
Sbjct: 95 LSIPEYYAEVERPKRLCVRYQNREGKQIEIEADDLLATCLQHEIDHL 141
>gi|365122897|ref|ZP_09339790.1| peptide deformylase [Tannerella sp. 6_1_58FAA_CT1]
gi|363641105|gb|EHL80512.1| peptide deformylase [Tannerella sp. 6_1_58FAA_CT1]
Length = 185
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 66/113 (58%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGE---RGEGEEIVLVNPRVNKYSNKMIP 55
MF+ M K+DG+GL+APQ+G++++++V N + E + ++N + + S I
Sbjct: 34 MFETMDKSDGVGLAAPQIGLDIRVLVINLDALSETFPEYKDYRKAMINAHIEEVSGDKIT 93
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
EEGCLS PGIH V R E +KI RD + + ARV QHE+DHL+
Sbjct: 94 REEGCLSLPGIHEPVTRQEKIKITYRDQDFVEHTEVFEGYVARVIQHEYDHLE 146
>gi|153008675|ref|YP_001369890.1| peptide deformylase [Ochrobactrum anthropi ATCC 49188]
gi|404318473|ref|ZP_10966406.1| peptide deformylase [Ochrobactrum anthropi CTS-325]
gi|151560563|gb|ABS14061.1| peptide deformylase [Ochrobactrum anthropi ATCC 49188]
Length = 175
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 63/107 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY GIGL+A QVG ++++V + E V +NP + ++++ YEEGC
Sbjct: 35 MFDTMYDAPGIGLAAIQVGEPIRMLVIDLAKEDEPKAPHVFINPEIVGVTDEVSTYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP ++K++ D +G + + L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPAAIKVNYFDADGKQHLIEADGLMATCLQHEIDHL 141
>gi|384265154|ref|YP_005420861.1| peptide deformylase [Bacillus amyloliquefaciens subsp. plantarum
YAU B9601-Y2]
gi|380498507|emb|CCG49545.1| peptide deformylase [Bacillus amyloliquefaciens subsp. plantarum
YAU B9601-Y2]
Length = 160
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 64/107 (59%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M + DG+GL+APQ+GI + V + +GE E I LVNP + + S + E GC
Sbjct: 35 MYDTMLEMDGVGLAAPQIGILKRAAVVD-IGE--ESGRIDLVNPVILEKSGEQTGVE-GC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFPG++ DV RP+ VK+ A D G F + AR QHE DHL
Sbjct: 91 LSFPGVYGDVTRPDYVKVKAYDRKGKPFILEAEGFLARAVQHEMDHL 137
>gi|319403561|emb|CBI77143.1| polypeptide deformylase [Bartonella rochalimae ATCC BAA-1498]
Length = 176
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 64/107 (59%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QVG+ ++++V + + +V++NP + S++ Y+EGC
Sbjct: 35 MLETMYNAQGIGLAAVQVGVPLRMLVVDIHSKDAPKNPLVIINPEILWVSDERSVYKEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P A+VERP+ +++ RD G + + +DL A QHE DHL
Sbjct: 95 LSIPDYFAEVERPKCLRMCYRDREGKQVEIEANDLLATCLQHEIDHL 141
>gi|422014709|ref|ZP_16361318.1| peptide deformylase [Providencia burhodogranariea DSM 19968]
gi|414100589|gb|EKT62204.1| peptide deformylase [Providencia burhodogranariea DSM 19968]
Length = 167
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 62/109 (56%), Gaps = 4/109 (3%)
Query: 1 MFDVMYKTD-GIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
+ D MY TD GIGL+APQVG+ +MV + R E +V VNP + + S Y+EG
Sbjct: 34 LLDTMYSTDSGIGLAAPQVGVTQSVMVIDISENRNEP--LVFVNPEIIE-SEGETSYQEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
CLS P I+ADV R + VK+ A D G F D A V QHE DHL
Sbjct: 91 CLSVPEIYADVARFQRVKVKALDREGNEFITESDDFLAIVMQHEIDHLH 139
>gi|154685988|ref|YP_001421149.1| peptide deformylase [Bacillus amyloliquefaciens FZB42]
gi|429505123|ref|YP_007186307.1| peptide deformylase [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
gi|154351839|gb|ABS73918.1| DefA [Bacillus amyloliquefaciens FZB42]
gi|429486713|gb|AFZ90637.1| peptide deformylase [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
Length = 160
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 64/107 (59%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M + DG+GL+APQ+GI + V + +GE E I LVNP + + S + E GC
Sbjct: 35 MYDTMLEMDGVGLAAPQIGILKRAAVVD-IGE--ESGRIDLVNPVILEKSGEQTGVE-GC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFPG++ DV RP+ VK+ A D G F + AR QHE DHL
Sbjct: 91 LSFPGVYGDVTRPDYVKVKAYDRKGKPFILEAEGFLARAVQHEMDHL 137
>gi|51892481|ref|YP_075172.1| polypeptide deformylase [Symbiobacterium thermophilum IAM 14863]
gi|81692121|sp|Q67PR5.1|DEF_SYMTH RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|51856170|dbj|BAD40328.1| polypeptide deformylase [Symbiobacterium thermophilum IAM 14863]
Length = 217
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 64/107 (59%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+APQVG++ +L+V +P + G G+ L+NP + K + + EGC
Sbjct: 35 MTETMYAAPGVGLAAPQVGVSKRLIVVDP--QDGSGQLYQLINPEIVK-AEGWVKGTEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG+ DV R E V++ A D G + + AR+FQHE DHL
Sbjct: 92 LSIPGMVGDVWRYEKVQVVALDRTGKKVWIDAEGYLARIFQHEIDHL 138
>gi|15887717|ref|NP_353398.1| polypeptide deformylase [Agrobacterium fabrum str. C58]
gi|335033098|ref|ZP_08526470.1| peptide deformylase [Agrobacterium sp. ATCC 31749]
gi|23396541|sp|Q8UID1.1|DEF_AGRT5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|15155278|gb|AAK86183.1| polypeptide deformylase [Agrobacterium fabrum str. C58]
gi|333795774|gb|EGL67099.1| peptide deformylase [Agrobacterium sp. ATCC 31749]
Length = 170
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 62/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E +V +NP + K S+ + YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRMLVIDVAREGEEKTPVVFINPEILKVSDDISTYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP S+ + +G + +V L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPASLTVQYVGRDGKQQTVEADGLLATCLQHEIDHL 141
>gi|330806738|ref|YP_004351200.1| peptide deformylase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|378948015|ref|YP_005205503.1| hypothetical protein PSF113_0073 [Pseudomonas fluorescens F113]
gi|423694583|ref|ZP_17669073.1| peptide deformylase [Pseudomonas fluorescens Q8r1-96]
gi|327374846|gb|AEA66196.1| Peptide deformylase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|359758029|gb|AEV60108.1| Def [Pseudomonas fluorescens F113]
gi|388004381|gb|EIK65694.1| peptide deformylase [Pseudomonas fluorescens Q8r1-96]
Length = 168
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRSEPR--VFINPEFETLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ VKI A D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVKIKALDRDGQPYELIAEGLLAVCIQHECDHL 139
>gi|99082420|ref|YP_614574.1| peptide deformylase [Ruegeria sp. TM1040]
gi|99038700|gb|ABF65312.1| peptide deformylase [Ruegeria sp. TM1040]
Length = 174
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE-RGEGEEIVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQ+G+ +L+V + V E G+ +V+ NPRV S++ YEEG
Sbjct: 34 MLETMYAAPGIGLAAPQIGVLDRLIVMDCVKEGEGDARPLVMFNPRVIASSDETNVYEEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P +A+V RP+ V ++ D +G + + L A QHE DHL
Sbjct: 94 CLSIPEQYAEVTRPKVVDVEWMDRDGNLQTETFDGLWATCVQHEIDHL 141
>gi|254515964|ref|ZP_05128024.1| peptide deformylase [gamma proteobacterium NOR5-3]
gi|219675686|gb|EED32052.1| peptide deformylase [gamma proteobacterium NOR5-3]
Length = 168
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QV ++ +L+V + R ++ +NP+V + + Y+EGC
Sbjct: 35 MLETMYAASGIGLAATQVNVHQRLLVLDTSENRDS--PMIFINPQVTILDDTLGSYDEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V RP +++++A +G FS+ L L A QHE DHL
Sbjct: 93 LSVPGFYEEVNRPRTIRVEALGRDGKAFSLELDGLTAICLQHEIDHL 139
>gi|116621863|ref|YP_824019.1| peptide deformylase [Candidatus Solibacter usitatus Ellin6076]
gi|116225025|gb|ABJ83734.1| peptide deformylase [Candidatus Solibacter usitatus Ellin6076]
Length = 171
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY G+GL+APQ+G++ ++ V + +++V++NP++ K K EEGC
Sbjct: 35 MFESMYAAKGVGLAAPQIGVSKKIAVIDVSNGENADDKLVIINPKILKIDGKQ-EGEEGC 93
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG V R V I A++ G F + DL AR F HE DHL
Sbjct: 94 LSIPGFREQVRRARCVTIRAQNAKGEEFEKTGEDLLARAFLHETDHL 140
>gi|254473716|ref|ZP_05087111.1| peptide deformylase [Pseudovibrio sp. JE062]
gi|211957102|gb|EEA92307.1| peptide deformylase [Pseudovibrio sp. JE062]
Length = 175
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 62/114 (54%), Gaps = 8/114 (7%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERG-------EGEEIVLVNPRVNKYSNKM 53
M MY GIGL+A Q+G+ ++ V + V ER E E +V +NP + S +
Sbjct: 35 MLQTMYDAPGIGLAASQIGVMKRMFVLD-VAERESEEDDSVEKEPMVFINPEITWSSEEK 93
Query: 54 IPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
Y+EGCLS PGI+ DVERP V++ +I G + + L A QHE DHL
Sbjct: 94 NTYQEGCLSIPGIYEDVERPAEVRVSFLNIEGEKQEIEAGGLLATCIQHELDHL 147
>gi|28867417|ref|NP_790036.1| polypeptide deformylase [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213968425|ref|ZP_03396568.1| polypeptide deformylase [Pseudomonas syringae pv. tomato T1]
gi|301384287|ref|ZP_07232705.1| peptide deformylase [Pseudomonas syringae pv. tomato Max13]
gi|302060151|ref|ZP_07251692.1| peptide deformylase [Pseudomonas syringae pv. tomato K40]
gi|302130424|ref|ZP_07256414.1| peptide deformylase [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|422659065|ref|ZP_16721494.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str.
M302278]
gi|32363153|sp|Q88B43.1|DEF1_PSESM RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|28850651|gb|AAO53731.1| polypeptide deformylase [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213926713|gb|EEB60265.1| polypeptide deformylase [Pseudomonas syringae pv. tomato T1]
gi|331017687|gb|EGH97743.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str.
M302278]
Length = 168
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 67/107 (62%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R +V +NP + K +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSAP--MVFINPEIEKLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ V++ A D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVRVKALDRDGKPYELVAEGLLAICIQHECDHL 139
>gi|440690566|pdb|3UWA|A Chain A, Crystal Structure Of A Probable Peptide Deformylase From
Synechococcus Phage S-Ssm7
gi|440690567|pdb|3UWB|A Chain A, Crystal Structure Of A Probable Peptide Deformylase From
Strucynechococcus Phage S-Ssm7 In Complex With Actinonin
Length = 154
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 65/106 (61%)
Query: 3 DVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLS 62
+ + +DGIGL+APQVGIN +++V + E + VNP++ S + + ++EGCLS
Sbjct: 36 EAXWASDGIGLAAPQVGINKRVIVVDETTEEHGKYAHLXVNPKITWKSEEKVLFDEGCLS 95
Query: 63 FPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
P + +V RP+S+K+ ++ +G L L ARV QHE DHL+
Sbjct: 96 VPDQNGEVLRPKSIKVTFQNKDGKYKKWKLDGLAARVVQHEIDHLE 141
>gi|93004869|ref|YP_579306.1| peptide deformylase [Psychrobacter cryohalolentis K5]
gi|123386822|sp|Q1QET1.1|DEF_PSYCK RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|92392547|gb|ABE73822.1| peptide deformylase [Psychrobacter cryohalolentis K5]
Length = 184
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QV ++QL+V + ++ V +NP+V + PYEEGC
Sbjct: 35 MIETMYDAQGIGLAASQVDHHIQLIVMDLSEDKDSPR--VFINPKVTPLVEEKQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P ++ VERP V+I+A D NG + + L A QHE DHL
Sbjct: 93 LSVPDVYDKVERPNKVRIEALDENGNKIDEEVEGLLAVCIQHEMDHL 139
>gi|262067438|ref|ZP_06027050.1| peptide deformylase [Fusobacterium periodonticum ATCC 33693]
gi|291378801|gb|EFE86319.1| peptide deformylase [Fusobacterium periodonticum ATCC 33693]
Length = 174
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 64/107 (59%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+TDGIGL+APQVG++ ++ V + G G+ L+NP + + + +EEGC
Sbjct: 36 MVETMYETDGIGLAAPQVGVSKRIFVCDD----GTGKIRKLINPIIEPLTEETQEFEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PGI+ VERP+ V + + NG DL A V QHE DHL
Sbjct: 92 LSVPGIYKKVERPKKVMLKYINENGEAVEEIAEDLLAVVVQHENDHL 138
>gi|226942187|ref|YP_002797260.1| peptide deformylase [Azotobacter vinelandii DJ]
gi|259645177|sp|C1DFV8.1|DEF_AZOVD RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|226717114|gb|ACO76285.1| Formylmethionine deformylase protein [Azotobacter vinelandii DJ]
Length = 168
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++ +L+V + ++ E V +NP + ++ PY+EGC
Sbjct: 35 MFETMYAAPGIGLAATQVNVHKRLVVMDLSEDKNEPR--VFINPEFEALTEELEPYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ V+I A D +G F + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVRIRALDRDGQPFELVAEGLLAVCIQHECDHL 139
>gi|218460831|ref|ZP_03500922.1| peptide deformylase [Rhizobium etli Kim 5]
Length = 171
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 61/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E + V +NP + K S++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRMLVIDVSREGEEKQPQVFINPEIVKSSDERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP V + D NG +V L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPAVVSVKYLDRNGKEQTVEADGLLATCLQHEIDHL 141
>gi|148241454|ref|YP_001226611.1| peptide deformylase [Synechococcus sp. RCC307]
gi|166198524|sp|A5GQU9.1|DEF_SYNR3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|147849764|emb|CAK27258.1| Peptide deformylase [Synechococcus sp. RCC307]
Length = 201
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 58/107 (54%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVG++ QL+V + E +VL+NP + S + YEEGC
Sbjct: 62 MLRSMYAAHGIGLAAPQVGVHQQLLVIDLDPEEAANPPLVLINPEIVATSGALDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ +V RP V + RD G L AR HE DHL
Sbjct: 122 LSIPGVYLNVVRPSQVDVKYRDELGRPQRRKADGLMARCILHEMDHL 168
>gi|398961098|ref|ZP_10678496.1| peptide deformylase [Pseudomonas sp. GM30]
gi|398153049|gb|EJM41556.1| peptide deformylase [Pseudomonas sp. GM30]
Length = 215
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 82 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRTEPR--VFINPEFESLTDEMDQYQEGC 139
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ VKI A D +G + + L A QHE DHL
Sbjct: 140 LSVPGFYENVDRPQKVKIKALDRDGQPYELVAEGLLAVCIQHECDHL 186
>gi|424888917|ref|ZP_18312520.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2012]
gi|393174466|gb|EJC74510.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2012]
Length = 171
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 61/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E + V +NP + K S++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRMLVIDVSREGEEKQPQVFINPEIVKSSDERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP V + D NG +V L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPAVVSVKYLDRNGKEQTVDADGLLATCLQHEIDHL 141
>gi|218513698|ref|ZP_03510538.1| peptide deformylase [Rhizobium etli 8C-3]
Length = 171
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 61/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E + V +NP + K S++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRMLVIDVSREGEEKQPQVFINPEIVKSSDERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP V + D NG +V L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPAVVSVKYLDRNGKEQTVEADGLLATCLQHEIDHL 141
>gi|190890084|ref|YP_001976626.1| peptide deformylase [Rhizobium etli CIAT 652]
gi|190695363|gb|ACE89448.1| peptide deformylase protein [Rhizobium etli CIAT 652]
Length = 171
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 61/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E + V +NP + K S++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRMLVIDVSREGEEKQPQVFINPEIVKSSDERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP V + D NG +V L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPAVVSVKYLDRNGKEQTVEADGLLATCLQHEIDHL 141
>gi|373459834|ref|ZP_09551601.1| Peptide deformylase [Caldithrix abyssi DSM 13497]
gi|371721498|gb|EHO43269.1| Peptide deformylase [Caldithrix abyssi DSM 13497]
Length = 166
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 68/108 (62%), Gaps = 3/108 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGE-EIVLVNPRVNKYSNKMIPYEEG 59
+ DVM+ DGIGL+APQ+GI+ Q++ + E E E V VNP++ + S + + EEG
Sbjct: 34 LIDVMHVEDGIGLAAPQIGISRQIIAVD-ASELVENEFPRVFVNPQILEASGEWV-VEEG 91
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS PG+ +V RPE++ + +D+ G F+ S +R+ QHE DHL
Sbjct: 92 CLSIPGVREEVTRPETILLKFQDVVGESFTQEFSGWLSRILQHEIDHL 139
>gi|424915776|ref|ZP_18339140.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM597]
gi|392851952|gb|EJB04473.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM597]
Length = 171
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 61/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E + V +NP + K S++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRMLVIDVSREGEEKQPQVFINPEIVKSSDERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP V + D NG +V L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPAVVSVKYLDRNGKEQTVEADGLLATCLQHEIDHL 141
>gi|424879774|ref|ZP_18303406.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WU95]
gi|392516137|gb|EIW40869.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WU95]
Length = 171
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 61/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E + V +NP + K S++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRMLVIDISREGEEKQPQVFINPEIVKSSDERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP V + D NG +V L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPAVVSVKYLDRNGKEQTVEADGLLATCLQHEIDHL 141
>gi|77456245|ref|YP_345750.1| peptide deformylase [Pseudomonas fluorescens Pf0-1]
gi|398976375|ref|ZP_10686281.1| peptide deformylase [Pseudomonas sp. GM25]
gi|77380248|gb|ABA71761.1| peptide deformylase [Pseudomonas fluorescens Pf0-1]
gi|398139211|gb|EJM28212.1| peptide deformylase [Pseudomonas sp. GM25]
Length = 168
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRTEPR--VFINPEFESLTDEMEQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ VKI A D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVKIKALDRDGKPYELIAEGLLAVCIQHECDHL 139
>gi|399003947|ref|ZP_10706592.1| peptide deformylase [Pseudomonas sp. GM18]
gi|398121237|gb|EJM10874.1| peptide deformylase [Pseudomonas sp. GM18]
Length = 168
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRSEPR--VFINPEFETLTDEMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ VKI A D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVKIKALDRDGQPYELIAEGLLAVCIQHECDHL 139
>gi|325291800|ref|YP_004277664.1| polypeptide deformylase [Agrobacterium sp. H13-3]
gi|325059653|gb|ADY63344.1| polypeptide deformylase peptide deformylase [Agrobacterium sp.
H13-3]
Length = 170
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 62/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QVG+ +++V + E E + +V +NP + + S+ + YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQVGVPRRMLVIDVSREDEEKKPVVFINPEILRVSDDVSAYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP S+ + D +G V L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPASLTVRYVDRDGKHQMVDADGLLATCLQHEIDHL 141
>gi|424920645|ref|ZP_18344006.1| peptide deformylase [Pseudomonas fluorescens R124]
gi|404301805|gb|EJZ55767.1| peptide deformylase [Pseudomonas fluorescens R124]
Length = 215
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 82 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRTEPR--VFINPEFESLTDEMDQYQEGC 139
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ VKI A D +G + + L A QHE DHL
Sbjct: 140 LSVPGFYENVDRPQKVKIKALDRDGQPYELIAEGLLAVCIQHECDHL 186
>gi|424898026|ref|ZP_18321600.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2297]
gi|393182253|gb|EJC82292.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2297]
Length = 171
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 61/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E + V +NP + K S++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRMLVIDVSREGEEKQPQVFINPEIVKSSDERSIYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP V + D NG +V L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPAVVSVKYLDRNGKEQTVEADGLLATCLQHEIDHL 141
>gi|313673898|ref|YP_004052009.1| peptide deformylase [Calditerrivibrio nitroreducens DSM 19672]
gi|312940654|gb|ADR19846.1| peptide deformylase [Calditerrivibrio nitroreducens DSM 19672]
Length = 167
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 65/107 (60%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+APQVGI+ +L + + E+ + + V +NP + K + I EEGC
Sbjct: 34 MAETMYNAPGVGLAAPQVGIDKRLFIIDISKEKNDLK--VFINPTILKKEGE-ICDEEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG +A+V R E V+ A+DING F + L AR QHE DHL
Sbjct: 91 LSVPGEYANVTRAEVVEAVAQDINGNEFIIKADGLMARAIQHELDHL 137
>gi|116250199|ref|YP_766037.1| peptide deformylase [Rhizobium leguminosarum bv. viciae 3841]
gi|115254847|emb|CAK05921.1| putative peptide deformylase (polypeptide deformylase) [Rhizobium
leguminosarum bv. viciae 3841]
Length = 171
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 61/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E + V +NP + K S++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRMLVIDISREGEEKQPQVFINPEIVKSSDERSLYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP V + D NG +V L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPAVVSVKYLDRNGKEQTVEADGLLATCLQHEIDHL 141
>gi|171057041|ref|YP_001789390.1| peptide deformylase [Leptothrix cholodnii SP-6]
gi|170774486|gb|ACB32625.1| peptide deformylase [Leptothrix cholodnii SP-6]
Length = 171
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 70/113 (61%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + ER + +VL+NPR+ S +M+ +EGC
Sbjct: 35 MFETMYEARGIGLAATQVDVHERVIVIDVSEERNDP--LVLINPRIVAASEEMMVGDEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LS P I+ VER V+++A D NG R+ L + QHE DHL +VFV
Sbjct: 93 LSVPTIYDRVERHAQVQVEALDRNGQRYEFEADGLLSVCVQHEMDHLLGKVFV 145
>gi|424873417|ref|ZP_18297079.1| peptide deformylase [Rhizobium leguminosarum bv. viciae WSM1455]
gi|393169118|gb|EJC69165.1| peptide deformylase [Rhizobium leguminosarum bv. viciae WSM1455]
Length = 171
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 61/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E + V +NP + K S++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRMLVIDISREGEEKQPQVFINPEIVKSSDERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP V + D NG +V L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPAVVAVKYLDRNGKEQTVEADGLLATCLQHEIDHL 141
>gi|126728525|ref|ZP_01744341.1| peptide deformylase [Sagittula stellata E-37]
gi|126711490|gb|EBA10540.1| peptide deformylase [Sagittula stellata E-37]
Length = 165
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 57/107 (53%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY G GL+APQVG+ +L V + + GE V +NP V P EE C
Sbjct: 34 MFETMYAAPGRGLAAPQVGVRSRLFVMDATWKDGEKTPTVCINPVVAPLDGPEEPGEEAC 93
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG+ V RP +++ D++ V L+ AR+ QHE DHL
Sbjct: 94 LSMPGVSVMVTRPTRIRLRYTDLDDKTHEVVLTGAAARIAQHETDHL 140
>gi|289548788|ref|YP_003473776.1| peptide deformylase [Thermocrinis albus DSM 14484]
gi|289182405|gb|ADC89649.1| peptide deformylase [Thermocrinis albus DSM 14484]
Length = 174
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 66/108 (61%), Gaps = 2/108 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGE-EIVLVNPRVNKYSNKMIPYEEG 59
M+D MY +G+GL+A Q+G +++MV + +R ++VL+NP++ + + I Y EG
Sbjct: 34 MWDTMYAEEGVGLAANQIGEPLRIMVIDTTPKRESPPVKLVLINPQLIE-AEGHITYREG 92
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLSFPG+ +V R V+ A D++G L PA VFQHE DHL
Sbjct: 93 CLSFPGLSVEVTRYSKVRFRALDLSGEEKEYQLEGFPAIVFQHELDHL 140
>gi|384449749|ref|YP_005662351.1| peptide deformylase [Chlamydophila pneumoniae LPCoLN]
gi|269302867|gb|ACZ32967.1| peptide deformylase [Chlamydophila pneumoniae LPCoLN]
Length = 186
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 63/113 (55%), Gaps = 6/113 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M D M G+GL+APQVG NV L V E +GE I V +NP ++ S +I
Sbjct: 34 MCDTMEAHRGVGLAAPQVGKNVSLFVMCVDRETEDGELIFSESPRVFINPVLSDPSETLI 93
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
+EGCLS PG+ +V RP+ + + A D+NG F+ L AR+ HE DHL
Sbjct: 94 IGKEGCLSIPGLRGEVFRPQKITVTAMDLNGKIFTEHLEGFTARIIMHETDHL 146
>gi|193215216|ref|YP_001996415.1| peptide deformylase [Chloroherpeton thalassium ATCC 35110]
gi|193088693|gb|ACF13968.1| peptide deformylase [Chloroherpeton thalassium ATCC 35110]
Length = 202
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 70/110 (63%), Gaps = 3/110 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN-PVGERGEGEE-IVLVNPRVNKYSNKMIPYEE 58
MF+ MY DGIGL+APQVG +++L+V + V E + E+ +V++NP++ + + + EE
Sbjct: 53 MFETMYNADGIGLAAPQVGKSLRLLVVDVSVMEDYQDEKPLVVINPQILE-TKGLSTMEE 111
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
GCLS PG+H +V RP+ + + RD + + ARV QHE +HLQ
Sbjct: 112 GCLSVPGVHEEVTRPKQITLKYRDADFVERVEIYDGMMARVLQHEIEHLQ 161
>gi|372267039|ref|ZP_09503087.1| peptide deformylase [Alteromonas sp. S89]
Length = 168
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 66/107 (61%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ G+GL+A Q+ ++ +++V + V E + E +VL+NP V ++ Y+EGC
Sbjct: 35 MFETMYEAPGVGLAATQINVHERIVVID-VSE-DQSEPLVLINPEVEVLDPEIHKYDEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + VERP +++ A D NG +++ L A QHE DHL
Sbjct: 93 LSVPGFYEKVERPRKIRLKALDRNGETYALEAEGLLAVCIQHEIDHL 139
>gi|339504932|ref|YP_004692352.1| peptide deformylase [Roseobacter litoralis Och 149]
gi|338758925|gb|AEI95389.1| peptide deformylase [Roseobacter litoralis Och 149]
Length = 175
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQVGI ++ V + V E GE IV+ NP V S++ YEEG
Sbjct: 37 MLETMYDAPGIGLAAPQVGILQRVFVMDCVKEPGETPRPIVMFNPEVIATSDETNVYEEG 96
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P ADV RP V++ D +GA + + L A QHE DHL
Sbjct: 97 CLSIPEQFADVTRPADVELRWMDRDGAEQTEVFTGLWATCAQHEIDHL 144
>gi|409408453|ref|ZP_11256888.1| polypeptide deformylase [Herbaspirillum sp. GW103]
gi|386431775|gb|EIJ44603.1| polypeptide deformylase [Herbaspirillum sp. GW103]
Length = 172
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+A QV ++ Q++V + V + G+ + V +NP + S + Y+EGC
Sbjct: 35 MAETMYAAPGVGLAASQVDVHEQVVVID-VSDEGKNLQ-VFINPEILWASEEKRVYDEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LS PGI+ VERP VK+ A D +G F V DL A QHE DHL +VFV
Sbjct: 93 LSVPGIYDGVERPARVKVRAFDADGKAFEVDADDLLAVCIQHEMDHLKGKVFV 145
>gi|399044438|ref|ZP_10738086.1| peptide deformylase [Rhizobium sp. CF122]
gi|398057217|gb|EJL49191.1| peptide deformylase [Rhizobium sp. CF122]
Length = 178
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 62/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E + +V VNP + S++ YEEGC
Sbjct: 41 MLETMYDAPGIGLAAIQIGVPRRMLVIDVSREGEEKQPLVFVNPEILASSDERSVYEEGC 100
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP +V + D +G +V L A QHE DHL
Sbjct: 101 LSIPDYYAEVERPAAVTVKYLDRDGKEQTVQADGLLATCLQHEIDHL 147
>gi|418294659|ref|ZP_12906547.1| peptide deformylase, partial [Pseudomonas stutzeri ATCC 14405 =
CCUG 16156]
gi|379066030|gb|EHY78773.1| peptide deformylase, partial [Pseudomonas stutzeri ATCC 14405 =
CCUG 16156]
Length = 145
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 66/107 (61%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + +++M Y+EGC
Sbjct: 12 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSEPR--VFINPELESLTDEMDQYQEGC 69
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ V+I A D +G + + L A QHE DHL
Sbjct: 70 LSVPGFYENVDRPQKVRIKALDRDGKPYEMVAEGLLAVCIQHECDHL 116
>gi|393766411|ref|ZP_10354967.1| peptide deformylase [Methylobacterium sp. GXF4]
gi|392728192|gb|EIZ85501.1| peptide deformylase [Methylobacterium sp. GXF4]
Length = 171
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 61/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY G+GL+A QVG+ +++ + E G E V ++P + S + Y+EGC
Sbjct: 35 MFETMYDAPGVGLAAIQVGVAKRVVTIDTSKEEGVREPRVFIDPEIVWSSEEKRLYDEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP+ V++ RDI G + L A QHE DHL
Sbjct: 95 LSIPEYYAEVERPDRVRVKFRDIEGREQEIEADGLLATCIQHEIDHL 141
>gi|302037138|ref|YP_003797460.1| peptide deformylase [Candidatus Nitrospira defluvii]
gi|300605202|emb|CBK41535.1| Peptide deformylase [Candidatus Nitrospira defluvii]
Length = 176
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 60/107 (56%), Gaps = 1/107 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+APQVG + QL+V + GE G + VL+NP + Y + + EGC
Sbjct: 38 MFETMYDEPGIGLAAPQVGRSQQLVVMDCPGEGG-FPKTVLINPTIQFYGPEQVEGWEGC 96
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS G+ V RP +V++ D N F S L A QHE DHL
Sbjct: 97 LSVDGLRGKVTRPSTVRVTGLDRNAKPFDFEASGLYAVCIQHELDHL 143
>gi|374704487|ref|ZP_09711357.1| peptide deformylase [Pseudomonas sp. S9]
Length = 168
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +L+V + +R E V +NP + +M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRLVVMDLSEDRSEPR--VFINPEFESLTEEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +++RP+ VK+ A D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENIDRPQKVKVKALDRDGKPYELIAEGLLAVCIQHECDHL 139
>gi|209547667|ref|YP_002279584.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209533423|gb|ACI53358.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2304]
Length = 171
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 61/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E + V +NP + K S++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRMLVIDVSREGEEKQPQVFINPEIVKSSDERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP V + D NG +V L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPAVVSVKFLDRNGKEQTVEADGLLATCLQHEIDHL 141
>gi|325107786|ref|YP_004268854.1| peptide deformylase [Planctomyces brasiliensis DSM 5305]
gi|324968054|gb|ADY58832.1| peptide deformylase [Planctomyces brasiliensis DSM 5305]
Length = 198
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 64/109 (58%), Gaps = 2/109 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGE-GEEIVLVNPRVNKYSNKMIPYEEG 59
MF +MY GIGL+A QV + QL V N + E EE+V +NP + K + EEG
Sbjct: 32 MFGLMYDAKGIGLAANQVALPYQLFVINLTADPAEKSEEMVFINPTILKRRGQETG-EEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
CLSFP + V+R + ++A D+ GA F LS++ AR QHE DH++
Sbjct: 91 CLSFPEMFGPVDRSAEIVVEAFDLRGALFRYELSEMAARAVQHENDHIE 139
>gi|398837167|ref|ZP_10594477.1| peptide deformylase [Herbaspirillum sp. YR522]
gi|398209158|gb|EJM95839.1| peptide deformylase [Herbaspirillum sp. YR522]
Length = 172
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 70/113 (61%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+A Q+ ++ +++V + V + G+ + V +NP V S++ Y+EGC
Sbjct: 35 MAETMYDAPGVGLAATQIDVHERVIVID-VSDEGKQLQ-VFINPEVLWASDEKRVYDEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PGI+ VERP VK+ A+D +G F V DL A QHE DHL+ VFV
Sbjct: 93 LSVPGIYDGVERPARVKVRAQDADGQPFEVEADDLLAVCIQHEMDHLEGKVFV 145
>gi|398997464|ref|ZP_10700289.1| peptide deformylase [Pseudomonas sp. GM21]
gi|398124106|gb|EJM13629.1| peptide deformylase [Pseudomonas sp. GM21]
Length = 168
Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRSEPR--VFINPEFETLTDEMEQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ VK+ A D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVKVKALDRDGQPYELIAEGLLAVCIQHECDHL 139
>gi|206889750|ref|YP_002248176.1| peptide deformylase [Thermodesulfovibrio yellowstonii DSM 11347]
gi|238058215|sp|B5YIL7.1|DEF_THEYD RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|206741688|gb|ACI20745.1| peptide deformylase [Thermodesulfovibrio yellowstonii DSM 11347]
Length = 165
Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +GIGL+APQVG+ +L+V + IVL+NP + +++ EEGC
Sbjct: 35 MIETMYNANGIGLAAPQVGVLKRLIVVDTSPREQNQSLIVLINPEITDSEGEILS-EEGC 93
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112
LS PG ++R E V + D NG + + L AR QHE DHL +L
Sbjct: 94 LSLPGFTTRLKRKERVIVKGLDRNGKEIEIEATGLLARALQHEIDHLDGILL 145
>gi|189502648|ref|YP_001958365.1| hypothetical protein Aasi_1326 [Candidatus Amoebophilus asiaticus
5a2]
gi|238692315|sp|B3ETT4.1|DEF_AMOA5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|189498089|gb|ACE06636.1| hypothetical protein Aasi_1326 [Candidatus Amoebophilus asiaticus
5a2]
Length = 188
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 64/114 (56%), Gaps = 7/114 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEG------EEIVLVNPRVNKYS-NKM 53
MF M G+GL+APQ+G ++QL V + G+G V +NP + Y N +
Sbjct: 33 MFITMNAAKGLGLAAPQIGKSIQLFVVDVSPFVGDGMVQPDKHRKVYINPVLEIYQPNTI 92
Query: 54 IPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
YEEGCLS PGI+ DV R + V+I D N L D+PARV QHE+DHL
Sbjct: 93 THYEEGCLSIPGIYVDVPRNKRVRIKFFDRNWQAQEEDLVDMPARVVQHEYDHL 146
>gi|398944790|ref|ZP_10671459.1| peptide deformylase [Pseudomonas sp. GM41(2012)]
gi|398157773|gb|EJM46146.1| peptide deformylase [Pseudomonas sp. GM41(2012)]
Length = 168
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRSEPR--VFINPEFETLTDEMEQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ VK+ A D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVKVKALDRDGQPYELIAEGLLAVCIQHECDHL 139
>gi|407772949|ref|ZP_11120251.1| peptide deformylase [Thalassospira profundimaris WP0211]
gi|407284902|gb|EKF10418.1| peptide deformylase [Thalassospira profundimaris WP0211]
Length = 172
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 61/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+APQ+G+ +++V + ++ + E + L+NP + S + Y+EGC
Sbjct: 35 MLETMYAAPGIGLAAPQIGVMKRVVVMDVSDDKDKPEPLKLINPEIIWESEETSIYQEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +ADVERP V + D NG + L A QHE DHL
Sbjct: 95 LSIPEQYADVERPAEVGMRYMDENGETHEIEADGLLATCIQHEIDHL 141
>gi|239826564|ref|YP_002949188.1| peptide deformylase [Geobacillus sp. WCH70]
gi|239806857|gb|ACS23922.1| peptide deformylase [Geobacillus sp. WCH70]
Length = 157
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 65/107 (60%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M++ M DG+GL+APQVGI Q+ V + + G I L+NPR+ + + I EGC
Sbjct: 35 MYETMIDEDGVGLAAPQVGIAKQIAVVDVGDKHGR---IELINPRIIEARGEQIG-PEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFPG+ +V+R VK+ A+D G F++ ++ AR QHE DHL
Sbjct: 91 LSFPGLFGEVKRANYVKVRAQDRRGRVFTLEATEFLARALQHEIDHL 137
>gi|254784305|ref|YP_003071733.1| peptide deformylase [Teredinibacter turnerae T7901]
gi|259645186|sp|C5BKQ0.1|DEF_TERTT RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|237684580|gb|ACR11844.1| peptide deformylase [Teredinibacter turnerae T7901]
Length = 168
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++ Q++V + + E E +V +NPR++ + YEEGC
Sbjct: 35 MFETMYDAPGIGLAATQVNVHEQIIVID-ISE-NHDEPLVFINPRIDVLDETLFDYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG + +V RP V++ A + +G F + L A QHE DHL+
Sbjct: 93 LSVPGFYEEVTRPRHVRVTALNRDGEEFVLEPEGLLAVCIQHEIDHLK 140
>gi|161501956|ref|YP_257174.2| peptide deformylase [Pseudomonas protegens Pf-5]
gi|341579779|gb|AAY95440.2| peptide deformylase [Pseudomonas protegens Pf-5]
Length = 168
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSEPR--VFINPEFEALTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ VKI A D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQRVKIKALDRDGQPYELIAEGLLAVCIQHECDHL 139
>gi|83859278|ref|ZP_00952799.1| polypeptide deformylase [Oceanicaulis sp. HTCC2633]
gi|83852725|gb|EAP90578.1| polypeptide deformylase [Oceanicaulis alexandrii HTCC2633]
Length = 175
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY DGIGL+A QVG++ +++V + ER + VNP + + + PY+EGC
Sbjct: 35 MVETMYAADGIGLAAIQVGVDKRVIVMDLSDERNDPR--YYVNPVITPLTEDLKPYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS P + VERP+ VK++ D +G + DL A QHE DHL+
Sbjct: 93 LSVPDVFDSVERPKKVKVEYLDYDGEKREEIAEDLFAVCIQHEMDHLE 140
>gi|425896692|ref|ZP_18873283.1| peptide deformylase [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
gi|397882103|gb|EJK98591.1| peptide deformylase [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
Length = 168
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRSEPR--VFINPEFEALTDEMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ VKI A D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQRVKIKALDRDGQPYELIAEGLLAVCIQHECDHL 139
>gi|359455369|ref|ZP_09244601.1| peptide deformylase [Pseudoalteromonas sp. BSi20495]
gi|414071411|ref|ZP_11407380.1| peptide deformylase [Pseudoalteromonas sp. Bsw20308]
gi|358047599|dbj|GAA80850.1| peptide deformylase [Pseudoalteromonas sp. BSi20495]
gi|410806131|gb|EKS12128.1| peptide deformylase [Pseudoalteromonas sp. Bsw20308]
Length = 168
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +GIGL+A QV I+ +++V + ER E +VL+NP++ K I EEGC
Sbjct: 35 MLETMYDENGIGLAATQVDIHQRIVVIDVSEERDEP--LVLINPQIIKKDGSTIS-EEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS P +A V+R E+V + A + NG F + +L A QHE DHLQ
Sbjct: 92 LSVPNSYAKVDRAETVTVSALNENGEEFVLDADELLAICIQHELDHLQ 139
>gi|313203124|ref|YP_004041781.1| peptide deformylase [Paludibacter propionicigenes WB4]
gi|312442440|gb|ADQ78796.1| peptide deformylase [Paludibacter propionicigenes WB4]
Length = 183
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 66/113 (58%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-----IVLVNPRVNKYSNKMIP 55
MF MY +G+GL+APQVG+ ++L+V + + + E I ++NP + + S + +
Sbjct: 34 MFQTMYHAEGVGLAAPQVGLPIRLLVIDLAPFKEDDPELGAFKITMINPEILERSEEEVS 93
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
+EGCLS PGIH V R +S+KI D + + ARV QHE+DHL+
Sbjct: 94 GDEGCLSIPGIHETVSRAQSIKITYLDPDFKEHTDVFEGYKARVVQHEYDHLE 146
>gi|452852680|ref|YP_007494364.1| Peptide deformylase [Desulfovibrio piezophilus]
gi|451896334|emb|CCH49213.1| Peptide deformylase [Desulfovibrio piezophilus]
Length = 165
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY++DG+GL+APQVG +++L+ + G + G+ VL+NP + + + + EEGC
Sbjct: 34 MIETMYESDGVGLAAPQVGESIRLICVDQSGPKLRGDLRVLINPEIVECDGQ-VDSEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112
LS P ++ V+R E VK++A D G + A + QHE DHL L
Sbjct: 93 LSCPELNVTVKRKERVKVNALDREGNEICLETDGFLAIILQHEIDHLDGVTL 144
>gi|78484538|ref|YP_390463.1| peptide deformylase [Thiomicrospira crunogena XCL-2]
gi|123755296|sp|Q31J84.1|DEF_THICR RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|78362824|gb|ABB40789.1| peptide deformylase [Thiomicrospira crunogena XCL-2]
Length = 169
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 64/107 (59%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY GIGL+APQV + +L+V + + E + E I L+NP + K + K I +EEGC
Sbjct: 35 MFYTMYDAPGIGLAAPQVAVQQRLIVVD-ISETKD-EPIALLNPEIIKTAGK-ITWEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PGI+A V+RP + + D +G ++L A QHE DHL
Sbjct: 92 LSIPGIYAKVDRPSDILVRGMDRDGKTIEFEANELLAVCIQHEIDHL 138
>gi|374329412|ref|YP_005079596.1| peptide deformylase [Pseudovibrio sp. FO-BEG1]
gi|359342200|gb|AEV35574.1| Peptide deformylase [Pseudovibrio sp. FO-BEG1]
Length = 175
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 62/114 (54%), Gaps = 8/114 (7%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERG-------EGEEIVLVNPRVNKYSNKM 53
M MY GIGL+A Q+G+ ++ V + V ER E E +V +NP + S +
Sbjct: 35 MLQTMYDAPGIGLAASQIGVMKRMFVLD-VAERESEEDDSVEKEPMVFINPEITWSSEEK 93
Query: 54 IPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
Y+EGCLS PG++ DVERP V++ +I G + + L A QHE DHL
Sbjct: 94 NTYQEGCLSIPGVYEDVERPAEVRVSFLNIEGEKQEIEAGGLLATCIQHELDHL 147
>gi|375309206|ref|ZP_09774487.1| peptide deformylase [Paenibacillus sp. Aloe-11]
gi|375078515|gb|EHS56742.1| peptide deformylase [Paenibacillus sp. Aloe-11]
Length = 165
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 65/108 (60%), Gaps = 6/108 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPR-VNKYSNKMIPYEEG 59
M D MY+ +G+GL+APQVGI +L+V + E G I ++NP V + ++ P EG
Sbjct: 35 MADTMYEAEGVGLAAPQVGILKRLIVVDAGDEHGL---IKMINPEIVAEEGEQLGP--EG 89
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS PG++ DV R E V + D G +V+ + L +R FQHE DHL
Sbjct: 90 CLSIPGLNGDVRRAEKVTVKGLDREGKAITVTATGLLSRAFQHEIDHL 137
>gi|395791605|ref|ZP_10471061.1| peptide deformylase [Bartonella alsatica IBS 382]
gi|395407908|gb|EJF74528.1| peptide deformylase [Bartonella alsatica IBS 382]
Length = 178
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 62/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY G+GL+A Q+GI ++++V + G + +V++NP + SN+ +EGC
Sbjct: 35 MLDTMYDAKGVGLAAIQIGIPLRMLVIDVSGNDAQKNPLVIINPEILWLSNEHNICKEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP+ + + RD G + + L A QHE DHL
Sbjct: 95 LSIPEYYAEVERPKRLCVCYRDREGKQTEIEADHLLATCLQHEIDHL 141
>gi|325983533|ref|YP_004295935.1| peptide deformylase [Nitrosomonas sp. AL212]
gi|325533052|gb|ADZ27773.1| peptide deformylase [Nitrosomonas sp. AL212]
Length = 167
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QV ++ +++V + R + +VL+NP + SN + YEEGC
Sbjct: 35 MAETMYAAPGIGLAATQVDVHERVIVIDTSEARND--LLVLINPEITA-SNGISDYEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LS PGI+ V+R ESVK+ A + G F + L A QHE DHL +VFV
Sbjct: 92 LSVPGIYGKVQRAESVKVRALNAQGESFVLDADGLLAVCIQHEMDHLAGKVFV 144
>gi|34499720|ref|NP_903935.1| peptide deformylase [Chromobacterium violaceum ATCC 12472]
gi|39930829|sp|Q7NQ75.1|DEF_CHRVO RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|34105571|gb|AAQ61925.1| Polypeptide deformylase [Chromobacterium violaceum ATCC 12472]
Length = 167
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 66/113 (58%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV + +L+V + ER E V +NP + + + + YEEGC
Sbjct: 35 MFETMYEAKGIGLAATQVDYHRRLVVMDISEERDERR--VFINPEIVEKDGETV-YEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PGI+ V R E VK+ A+D +G F + L A QHE DHL VFV
Sbjct: 92 LSVPGIYDKVTRAERVKVKAQDRDGKPFELEADGLLAICIQHELDHLNGVVFV 144
>gi|398853371|ref|ZP_10609974.1| peptide deformylase [Pseudomonas sp. GM80]
gi|398239902|gb|EJN25600.1| peptide deformylase [Pseudomonas sp. GM80]
Length = 168
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + +M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRTEPR--VFINPEFESLTEEMEQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ VKI A D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVKIKALDRDGKPYELIAEGLLAVCIQHECDHL 139
>gi|77464452|ref|YP_353956.1| peptide deformylase [Rhodobacter sphaeroides 2.4.1]
gi|126463292|ref|YP_001044406.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029]
gi|221640344|ref|YP_002526606.1| peptide deformylase [Rhodobacter sphaeroides KD131]
gi|332559341|ref|ZP_08413663.1| Peptide deformylase [Rhodobacter sphaeroides WS8N]
gi|77388870|gb|ABA80055.1| peptide deformylase [Rhodobacter sphaeroides 2.4.1]
gi|126104956|gb|ABN77634.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029]
gi|221161125|gb|ACM02105.1| Peptide deformylase [Rhodobacter sphaeroides KD131]
gi|332277053|gb|EGJ22368.1| Peptide deformylase [Rhodobacter sphaeroides WS8N]
Length = 177
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGER-GEGEEIVLVNPRVNKYSNKMIPYEEG 59
M MY GIGL+APQVG+ +L+V + E G + +VNP V S + YEEG
Sbjct: 34 MLATMYDAPGIGLAAPQVGVVRRLIVLDCNKESDGARRPVAMVNPEVVWRSEDVSTYEEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P + ADVERP VK+ ++G + L A QHE DHL
Sbjct: 94 CLSLPNVFADVERPAEVKVRWTGLDGREEEEQFAGLWATCVQHEIDHL 141
>gi|375362216|ref|YP_005130255.1| peptide deformylase [Bacillus amyloliquefaciens subsp. plantarum
CAU B946]
gi|421731758|ref|ZP_16170881.1| peptide deformylase [Bacillus amyloliquefaciens subsp. plantarum
M27]
gi|451347057|ref|YP_007445688.1| peptide deformylase [Bacillus amyloliquefaciens IT-45]
gi|371568210|emb|CCF05060.1| peptide deformylase [Bacillus amyloliquefaciens subsp. plantarum
CAU B946]
gi|407073971|gb|EKE46961.1| peptide deformylase [Bacillus amyloliquefaciens subsp. plantarum
M27]
gi|449850815|gb|AGF27807.1| peptide deformylase [Bacillus amyloliquefaciens IT-45]
Length = 160
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 63/107 (58%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M + DG+GL+APQ+GI + V + +GE E I LVNP + + S + E GC
Sbjct: 35 MYDTMLEMDGVGLAAPQIGILKRAAVVD-IGE--ESGRIDLVNPVILEKSGEQTGVE-GC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFPG+ DV RP+ VK+ A D G F + AR QHE DHL
Sbjct: 91 LSFPGVFGDVTRPDYVKVKAHDRKGKPFILEAEGFLARAVQHEMDHL 137
>gi|363899131|ref|ZP_09325642.1| polypeptide deformylase [Oribacterium sp. ACB1]
gi|395209288|ref|ZP_10398382.1| peptide deformylase [Oribacterium sp. ACB8]
gi|361959461|gb|EHL12748.1| polypeptide deformylase [Oribacterium sp. ACB1]
gi|394704919|gb|EJF12448.1| peptide deformylase [Oribacterium sp. ACB8]
Length = 164
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 60/107 (56%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY +G+GL+APQVGI Q+ V + G+G V +NP + ++ EEGC
Sbjct: 35 MFETMYDANGVGLAAPQVGILKQIFVVDI----GDGNRYVAINPEIRTLGEEVQTGEEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG V RP +++ A D N +++ S AR F HE DHL
Sbjct: 91 LSVPGKEGIVTRPMKIEVKALDQNMQEYTLEASGFLARAFSHENDHL 137
>gi|384083011|ref|ZP_09994186.1| peptide deformylase [gamma proteobacterium HIMB30]
Length = 170
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A Q+ ++++++V + + + E +V++NP + + ++ +EGC
Sbjct: 35 MFETMYEAQGIGLAATQIDVHLRVVVIDL--QDDQNEPLVMINPEFDTLTKEIDEMQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PGIH V+RPE +++ A D +G + + + L A QHE DHL
Sbjct: 93 LSVPGIHEVVKRPEHIRLKALDRDGNSYELEATGLFAVCIQHECDHL 139
>gi|262403341|ref|ZP_06079901.1| peptide deformylase [Vibrio sp. RC586]
gi|262350840|gb|EEY99973.1| peptide deformylase [Vibrio sp. RC586]
Length = 168
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 66/108 (61%), Gaps = 4/108 (3%)
Query: 1 MFDVMYKTD-GIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
+ D +Y TD GIGL+APQVG ++V + R E +VL+NP+V SNK + +EG
Sbjct: 34 LLDTLYATDNGIGLAAPQVGREEAIVVIDLSDNRDE--PMVLINPKVVSGSNKEMG-QEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P +ADVER SV ++A D +G + SD A V QHE DHL
Sbjct: 91 CLSVPDYYADVERYTSVVVEALDRDGKPLRIETSDFLAIVMQHEIDHL 138
>gi|405377555|ref|ZP_11031496.1| peptide deformylase [Rhizobium sp. CF142]
gi|397325992|gb|EJJ30316.1| peptide deformylase [Rhizobium sp. CF142]
Length = 171
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 59/107 (55%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QVG+ +++V + E E + +V +NP + S+ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQVGVPRRMLVIDLSKEGEEKQPLVFINPEIVSSSDDRSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP V + D G SV L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPAKVTVKYLDREGKEQSVEADGLLATCLQHEIDHL 141
>gi|374324701|ref|YP_005077830.1| peptide deformylase [Paenibacillus terrae HPL-003]
gi|357203710|gb|AET61607.1| peptide deformylase [Paenibacillus terrae HPL-003]
Length = 165
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 63/107 (58%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY+ +G+GL+APQVGI +L+V + E G I ++NP + + E GC
Sbjct: 35 MADTMYEAEGVGLAAPQVGILKRLIVVDAGDEHGL---IKMINPEIVSEEGEQFGAE-GC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV R E V + D +G +V+ + L +R FQHE DHL
Sbjct: 91 LSIPGLNGDVRRAEKVTVKGLDRDGKAITVTATGLLSRAFQHEIDHL 137
>gi|414175566|ref|ZP_11429970.1| peptide deformylase [Afipia broomeae ATCC 49717]
gi|410889395|gb|EKS37198.1| peptide deformylase [Afipia broomeae ATCC 49717]
Length = 171
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 59/107 (55%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY GIGL+A QV + ++L+ + + GE E V +NP + S++M YEEGC
Sbjct: 35 MFQTMYDAPGIGLAAIQVAVPLRLITMDLSKKEGEKEPRVFINPEILASSDEMSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + +VERP V++ D+ G L A QHE DHL
Sbjct: 95 LSIPEYYEEVERPARVRVRFMDLEGVTREEDAEGLYATCIQHEIDHL 141
>gi|424808894|ref|ZP_18234283.1| peptide deformylase [Vibrio mimicus SX-4]
gi|342323846|gb|EGU19629.1| peptide deformylase [Vibrio mimicus SX-4]
Length = 197
Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 66/108 (61%), Gaps = 4/108 (3%)
Query: 1 MFDVMYKTD-GIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
+ D +Y TD GIGL+APQVG ++V + R E +VL+NP+V SNK + +EG
Sbjct: 63 LLDTLYATDNGIGLAAPQVGREEAIVVIDLSDNRDE--PMVLINPKVVSGSNKEMG-QEG 119
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P +ADVER SV ++A D +G + SD A V QHE DHL
Sbjct: 120 CLSVPDYYADVERYTSVVVEALDRDGKPLKIESSDFLAIVMQHEIDHL 167
>gi|398807803|ref|ZP_10566675.1| peptide deformylase [Variovorax sp. CF313]
gi|398088837|gb|EJL79385.1| peptide deformylase [Variovorax sp. CF313]
Length = 172
Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 67/113 (59%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QV ++ +++V + ER + IVL+NP + S++ + EEGC
Sbjct: 35 MLETMYDASGIGLAATQVDVHERVVVIDISEERNQ--PIVLINPEIIWASDEKVLNEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LS PGI+ V R SVK+ A D NG ++ L A QHE DHL +VFV
Sbjct: 93 LSVPGIYDGVMRSTSVKVQALDENGESRTIEADGLLAVCIQHELDHLLGKVFV 145
>gi|282890597|ref|ZP_06299120.1| hypothetical protein pah_c022o198 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338175273|ref|YP_004652083.1| peptide deformylase [Parachlamydia acanthamoebae UV-7]
gi|281499594|gb|EFB41890.1| hypothetical protein pah_c022o198 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336479631|emb|CCB86229.1| peptide deformylase [Parachlamydia acanthamoebae UV-7]
Length = 177
Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 68/112 (60%), Gaps = 5/112 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN-PV----GERGEGEEIVLVNPRVNKYSNKMIP 55
M + M+ T+GIGL+A Q+G + + V P+ G +G++ V +NP++ YS +
Sbjct: 34 MIETMHATNGIGLAANQIGQLLSIFVTCVPIAQDDGTWIDGKDRVFINPKILAYSQEFQV 93
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
+ EGCLS P + +DV RPES+KI A D++G F +++ A F HE DHL
Sbjct: 94 FSEGCLSIPKLFSDVARPESIKIQAMDLDGNVFEETMTGYEATNFMHENDHL 145
>gi|150007311|ref|YP_001302054.1| peptide deformylase [Parabacteroides distasonis ATCC 8503]
gi|255014064|ref|ZP_05286190.1| peptide deformylase [Bacteroides sp. 2_1_7]
gi|256839600|ref|ZP_05545109.1| polypeptide deformylase [Parabacteroides sp. D13]
gi|262382116|ref|ZP_06075254.1| polypeptide deformylase [Bacteroides sp. 2_1_33B]
gi|298375297|ref|ZP_06985254.1| peptide deformylase [Bacteroides sp. 3_1_19]
gi|301310689|ref|ZP_07216628.1| peptide deformylase [Bacteroides sp. 20_3]
gi|410101704|ref|ZP_11296632.1| peptide deformylase [Parabacteroides sp. D25]
gi|423332158|ref|ZP_17309942.1| peptide deformylase [Parabacteroides distasonis CL03T12C09]
gi|423336940|ref|ZP_17314687.1| peptide deformylase [Parabacteroides distasonis CL09T03C24]
gi|158513748|sp|A6L9R8.1|DEF_PARD8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|149935735|gb|ABR42432.1| polypeptide deformylase [Parabacteroides distasonis ATCC 8503]
gi|256738530|gb|EEU51855.1| polypeptide deformylase [Parabacteroides sp. D13]
gi|262297293|gb|EEY85223.1| polypeptide deformylase [Bacteroides sp. 2_1_33B]
gi|298267797|gb|EFI09453.1| peptide deformylase [Bacteroides sp. 3_1_19]
gi|300832263|gb|EFK62894.1| peptide deformylase [Bacteroides sp. 20_3]
gi|409229999|gb|EKN22871.1| peptide deformylase [Parabacteroides distasonis CL03T12C09]
gi|409239502|gb|EKN32286.1| peptide deformylase [Parabacteroides sp. D25]
gi|409239959|gb|EKN32742.1| peptide deformylase [Parabacteroides distasonis CL09T03C24]
Length = 185
Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 70/118 (59%), Gaps = 7/118 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNP--VGE---RGEGEEIVLVNPRVNKYSNKMIP 55
MF+ MY DG+GL+APQVG++++L+V + +G+ +G + L+NP + S + I
Sbjct: 34 MFETMYNADGVGLAAPQVGLSIRLVVIDGDVMGDDFPECKGFKRALINPEFLERSEEEIA 93
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
EEGCLS PGIH V R ++V++ D N + AR+ QHE +HL VF+
Sbjct: 94 MEEGCLSLPGIHEKVSRSKTVRVRYWDENWEEHEEVVEGFAARIVQHECEHLTGHVFI 151
>gi|218887129|ref|YP_002436450.1| peptide deformylase [Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218758083|gb|ACL08982.1| peptide deformylase [Desulfovibrio vulgaris str. 'Miyazaki F']
Length = 184
Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 64/109 (58%), Gaps = 2/109 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ DGIGL+APQVG + +L+V + G + VNPR+ +K + EEGC
Sbjct: 34 MAETMYRQDGIGLAAPQVGEHCRLIVVDVSGPEKREALMTFVNPRLELTGDK-VDSEEGC 92
Query: 61 LSFP-GIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS P G A V R ++V++ ARD++G + L A QHE DHL+
Sbjct: 93 LSVPGGYRATVTRSDTVRLTARDLDGNEVCMDADGLLAVCLQHEVDHLK 141
>gi|442804802|ref|YP_007372951.1| peptide deformylase Def [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740652|gb|AGC68341.1| peptide deformylase Def [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 155
Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 65/107 (60%), Gaps = 5/107 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY +G+GL+APQVG+ ++ V + GEG IVL+NP + S + + EGC
Sbjct: 35 MLDTMYDANGVGLAAPQVGVLKRICVIDV----GEGP-IVLINPEKIEESAEQVVDIEGC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ +V+RPE V + A + G F++ + L AR HE DHL
Sbjct: 90 LSIPGVYGEVKRPERVVVKALNRKGESFTIEGTGLLARALCHEMDHL 136
>gi|400755848|ref|YP_006564216.1| peptide deformylase Def [Phaeobacter gallaeciensis 2.10]
gi|398655001|gb|AFO88971.1| peptide deformylase Def [Phaeobacter gallaeciensis 2.10]
Length = 169
Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 56/108 (51%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY G GL+APQVG+ ++L V + + G + +V VNP + S + EGC
Sbjct: 34 MLDTMYAAPGRGLAAPQVGVLIRLFVMDTTWKEGTRDPLVCVNPDIVALSAETATMSEGC 93
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS G+ +V RP V + D+ G R A QHE+DHL+
Sbjct: 94 LSIKGVSLEVTRPAWVDLAWSDLQGVRHQRRFEGFAAACVQHEYDHLE 141
>gi|449144818|ref|ZP_21775630.1| polypeptide deformylase [Vibrio mimicus CAIM 602]
gi|449079603|gb|EMB50525.1| polypeptide deformylase [Vibrio mimicus CAIM 602]
Length = 168
Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 66/108 (61%), Gaps = 4/108 (3%)
Query: 1 MFDVMYKTD-GIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
+ D +Y TD GIGL+APQVG ++V + R E +VL+NP+V SNK + +EG
Sbjct: 34 LLDTLYATDNGIGLAAPQVGREEAIVVIDLSDNRDE--PMVLINPKVVSGSNKEMG-QEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P +ADVER SV ++A D +G + SD A V QHE DHL
Sbjct: 91 CLSVPDYYADVERYTSVVVEALDRDGKPLKIESSDFLAIVMQHEIDHL 138
>gi|347732975|ref|ZP_08866041.1| peptide deformylase [Desulfovibrio sp. A2]
gi|347518261|gb|EGY25440.1| peptide deformylase [Desulfovibrio sp. A2]
Length = 180
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ DGIGL+APQVG + +L+V + G + VNPR+ + + + I EEGC
Sbjct: 30 MAETMYRQDGIGLAAPQVGEHCRLIVVDVSGPEKREALMTFVNPRL-ELTGEKIDSEEGC 88
Query: 61 LSFP-GIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS P G A V R ++V++ ARD++G + L A QHE DHL+
Sbjct: 89 LSVPGGYRATVTRSDTVRLTARDLDGNEVCMDADGLLAVCLQHEVDHLK 137
>gi|407717361|ref|YP_006838641.1| peptide deformylase 1 [Cycloclasticus sp. P1]
gi|407257697|gb|AFT68138.1| Peptide deformylase 1 [Cycloclasticus sp. P1]
Length = 176
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 66/107 (61%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV + +L+V + V E + E++ L+NP + + + +EGC
Sbjct: 35 MFETMYAAPGIGLAATQVNYHKRLIVID-VSE-DKNEQLCLINPVIT-HKEGIEVMQEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + DVER ESV I A+D +G F ++ DL A QHE DHL
Sbjct: 92 LSVPGFYEDVERAESVTISAQDEHGKPFELTADDLLAVCIQHEIDHL 138
>gi|390453284|ref|ZP_10238812.1| peptide deformylase [Paenibacillus peoriae KCTC 3763]
Length = 165
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 66/108 (61%), Gaps = 6/108 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPR-VNKYSNKMIPYEEG 59
M D MY+ +G+GL+APQVGI +L+V + E+G I ++NP V + ++ P EG
Sbjct: 35 MADTMYEAEGVGLAAPQVGILKRLIVVDAGDEQGL---IKMINPEIVAEEGEQLGP--EG 89
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS PG++ DV R E V + D G +V+ + L +R FQHE DHL
Sbjct: 90 CLSIPGLNGDVRRAEKVTVKGLDREGKVITVTATGLLSRAFQHEIDHL 137
>gi|359781166|ref|ZP_09284391.1| peptide deformylase [Pseudomonas psychrotolerans L19]
gi|359371226|gb|EHK71792.1| peptide deformylase [Pseudomonas psychrotolerans L19]
Length = 168
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +L+V + V E + E +V +NP + ++ Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHRRLVVID-VSE-DKSEPLVFINPEAEPLTQELGEYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + V RPE V++ A D +G F + L A QHE DHL
Sbjct: 93 LSIPGFYEKVCRPERVRVKALDRDGKPFELECDGLLAVCIQHEIDHL 139
>gi|238028945|ref|YP_002913176.1| polypeptide deformylase [Burkholderia glumae BGR1]
gi|237878139|gb|ACR30472.1| Polypeptide deformylase [Burkholderia glumae BGR1]
Length = 167
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 68/113 (60%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QV ++ +++V + ++ E V +NP + S+ YEEGC
Sbjct: 35 MAETMYAAPGIGLAATQVDVHERVIVIDTSEDKNELR--VFINPEIVWSSDGKQIYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LS PG++ +VERP+ V++ A D+ G +F + L A QHE DHL +VFV
Sbjct: 93 LSVPGVYDEVERPDHVRVRALDVQGQQFELDCEGLLAVCVQHEMDHLLGRVFV 145
>gi|224023749|ref|ZP_03642115.1| hypothetical protein BACCOPRO_00465 [Bacteroides coprophilus DSM
18228]
gi|224016971|gb|EEF74983.1| hypothetical protein BACCOPRO_00465 [Bacteroides coprophilus DSM
18228]
Length = 184
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 65/112 (58%), Gaps = 5/112 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI-----VLVNPRVNKYSNKMIP 55
MF+ M + DG+GL+APQVG+ ++++V N + E V +NP + + ++M+
Sbjct: 34 MFETMDRADGVGLAAPQVGLPIRVVVVNLDVLSDDMPEFKDFKRVYINPHILETGDEMVS 93
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
EEGCLS PGIH V+RP+ + + D N + ARV QHEFDHL
Sbjct: 94 MEEGCLSLPGIHESVKRPDRIHVTYLDENMTAHDEWVEGYLARVMQHEFDHL 145
>gi|260588060|ref|ZP_05853973.1| peptide deformylase [Blautia hansenii DSM 20583]
gi|331082371|ref|ZP_08331497.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA]
gi|260541587|gb|EEX22156.1| peptide deformylase [Blautia hansenii DSM 20583]
gi|330400857|gb|EGG80458.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA]
Length = 159
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 63/108 (58%), Gaps = 5/108 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ G+GL+APQVGI Q++V + GE + IVL+NP + + S EEGC
Sbjct: 35 MFDTMYEAYGVGLAAPQVGILKQIVVIDTTGE----DPIVLINPEIIETSGSQTG-EEGC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG+ V RP VK+ A D + F + +L AR HE DHL
Sbjct: 90 LSVPGMSGVVTRPNYVKVRAFDEDMQEFILEGEELLARAICHETDHLH 137
>gi|89070116|ref|ZP_01157446.1| peptide deformylase [Oceanicola granulosus HTCC2516]
gi|89044337|gb|EAR50480.1| peptide deformylase [Oceanicola granulosus HTCC2516]
Length = 176
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQVG+ +++V + V + GE +VL +P + S+ YEEG
Sbjct: 38 MLETMYDAPGIGLAAPQVGVLKRVLVMDCVKDEGEAPRPLVLCDPEIVWTSDARNVYEEG 97
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P +A+VERP V++ D+ G L A QHE DHL
Sbjct: 98 CLSIPDQYAEVERPAEVEVRWTDLEGGARRERFDGLWATCVQHEIDHL 145
>gi|431925232|ref|YP_007238266.1| peptide deformylase [Pseudomonas stutzeri RCH2]
gi|431823519|gb|AGA84636.1| peptide deformylase [Pseudomonas stutzeri RCH2]
Length = 168
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSEPR--VFINPEFESLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ V+I A D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVRIKALDRDGKPYELVAEGLLAVCIQHECDHL 139
>gi|409435828|ref|ZP_11263036.1| peptide deformylase [Rhizobium mesoamericanum STM3625]
gi|408752586|emb|CCM74183.1| peptide deformylase [Rhizobium mesoamericanum STM3625]
Length = 172
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 62/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E + +V VNP + S++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRMLVIDVSREGEEKQPLVFVNPEIVVSSDERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP +V + D +G +V L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPATVTVKYLDRDGKEQTVEADGLLATCLQHEIDHL 141
>gi|255037799|ref|YP_003088420.1| peptide deformylase [Dyadobacter fermentans DSM 18053]
gi|254950555|gb|ACT95255.1| peptide deformylase [Dyadobacter fermentans DSM 18053]
Length = 194
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 72/120 (60%), Gaps = 13/120 (10%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGERGEGE-----------EIVLVNPRVN 47
MF+ M+ +G+GL+APQ+G+N+++ V + P ER E + + +NP +
Sbjct: 34 MFETMHGANGVGLAAPQIGLNIRIFVVDGTPFAERDEDDDDEPDLSLVDFKKTFINPEIL 93
Query: 48 KYSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
+ + + +EEGCLS PGI DV RPE+++I RD++ + S + AR+ QHE+DHL
Sbjct: 94 EETGEEWGFEEGCLSIPGIRGDVYRPETLRIRYRDLDWNEHEETYSGMAARIIQHEYDHL 153
>gi|399991313|ref|YP_006571553.1| peptide deformylase Def [Phaeobacter gallaeciensis DSM 17395 = CIP
105210]
gi|398655868|gb|AFO89834.1| peptide deformylase Def [Phaeobacter gallaeciensis DSM 17395 = CIP
105210]
Length = 169
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 58/108 (53%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G GL+APQVG+ ++L V + + G + +V VNP + S +M EGC
Sbjct: 34 MLETMYAAPGRGLAAPQVGVLIRLFVMDTTWKEGTRDPLVCVNPDIVALSVEMATMSEGC 93
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS G+ +V RP V + D++G R A QHE+DHL+
Sbjct: 94 LSIKGVSLEVTRPAWVDLAWSDLHGVRHQRRFEGFAAACVQHEYDHLE 141
>gi|119471681|ref|ZP_01614066.1| N-terminal methionine peptide deformylase [Alteromonadales
bacterium TW-7]
gi|359450339|ref|ZP_09239793.1| peptide deformylase [Pseudoalteromonas sp. BSi20480]
gi|392540119|ref|ZP_10287256.1| peptide deformylase [Pseudoalteromonas marina mano4]
gi|119445460|gb|EAW26747.1| N-terminal methionine peptide deformylase [Alteromonadales
bacterium TW-7]
gi|358043888|dbj|GAA76042.1| peptide deformylase [Pseudoalteromonas sp. BSi20480]
Length = 168
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +GIGL+A QV I+ +++V + ER E +VL+NP++ K I EEGC
Sbjct: 35 MLETMYDENGIGLAATQVNIHQRIVVIDVSEERDEP--LVLINPQIIKKDGSTIS-EEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS P +A V+R E+V + A + NG F + +L A QHE DHLQ
Sbjct: 92 LSVPNSYAKVDRAETVTVAALNENGEEFVLDADELLAICIQHELDHLQ 139
>gi|423092858|ref|ZP_17080654.1| peptide deformylase [Pseudomonas fluorescens Q2-87]
gi|397882446|gb|EJK98933.1| peptide deformylase [Pseudomonas fluorescens Q2-87]
Length = 168
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRSEPR--VFINPEFETLTDEMEQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ V+I A D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVRIKALDRDGQPYEMIAEGLLAVCIQHECDHL 139
>gi|239832661|ref|ZP_04680990.1| peptide deformylase [Ochrobactrum intermedium LMG 3301]
gi|444311604|ref|ZP_21147209.1| peptide deformylase [Ochrobactrum intermedium M86]
gi|239824928|gb|EEQ96496.1| peptide deformylase [Ochrobactrum intermedium LMG 3301]
gi|443485034|gb|ELT47831.1| peptide deformylase [Ochrobactrum intermedium M86]
Length = 175
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 62/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY GIGL+A QVG ++++V + E V +NP + +++ YEEGC
Sbjct: 35 MFDTMYDAPGIGLAAIQVGEPIRMLVIDLAKEGEPKAPHVFINPEIVGVTDEASTYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP ++K++ D +G ++ L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPAAIKVNYFDADGKPHAMEADGLMATCLQHEIDHL 141
>gi|421615478|ref|ZP_16056502.1| peptide deformylase [Pseudomonas stutzeri KOS6]
gi|409782551|gb|EKN62106.1| peptide deformylase [Pseudomonas stutzeri KOS6]
Length = 168
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSEPR--VFINPEFESLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ V+I A D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVRIKALDRDGKPYELVAEGLLAVCIQHECDHL 139
>gi|374621130|ref|ZP_09693664.1| peptide deformylase [gamma proteobacterium HIMB55]
gi|374304357|gb|EHQ58541.1| peptide deformylase [gamma proteobacterium HIMB55]
Length = 168
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY +GIGL+A Q+ ++ Q++V + +R V +NP V + +EEGC
Sbjct: 35 MFETMYDANGIGLAASQIDVHEQVIVIDLSNDRSTPR--VFINPNVEVIDESLDGFEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG VERP+++++ A D +G +++ L A QHE DHLQ
Sbjct: 93 LSVPGFSESVERPKAIRVTALDQDGTAIDETVTGLLAVCLQHEMDHLQ 140
>gi|345876227|ref|ZP_08828001.1| peptide deformylase [Neisseria weaveri LMG 5135]
gi|417957675|ref|ZP_12600595.1| peptide deformylase [Neisseria weaveri ATCC 51223]
gi|343966832|gb|EGV35084.1| peptide deformylase [Neisseria weaveri LMG 5135]
gi|343968008|gb|EGV36246.1| peptide deformylase [Neisseria weaveri ATCC 51223]
Length = 166
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 68/113 (60%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ +GIGL+A QV ++ +++V + ER E V +NP + + + YEEGC
Sbjct: 35 MFETMYEANGIGLAATQVDVHERVVVMDLSEERNEPR--VFINPIIT-HKDGETTYEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LS PGI+ V R E V ++A D G +F++ L A QHE DHL +VFV
Sbjct: 92 LSVPGIYDTVTRAEHVIVEALDEKGQKFTLEADGLLAICIQHELDHLMGKVFV 144
>gi|407367489|ref|ZP_11114021.1| peptide deformylase [Pseudomonas mandelii JR-1]
Length = 168
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRSEPR--VFINPEFEPLTDEMEQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ VK+ A D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVKVKALDRDGKPYELIAEGLLAVCIQHECDHL 139
>gi|385243560|ref|YP_005811406.1| Peptide deformylase [Chlamydia trachomatis D-EC]
gi|385244440|ref|YP_005812284.1| Peptide deformylase [Chlamydia trachomatis D-LC]
gi|385270037|ref|YP_005813197.1| Peptide deformylase [Chlamydia trachomatis A2497]
gi|297748483|gb|ADI51029.1| Peptide deformylase [Chlamydia trachomatis D-EC]
gi|297749363|gb|ADI52041.1| Peptide deformylase [Chlamydia trachomatis D-LC]
gi|347975177|gb|AEP35198.1| Peptide deformylase [Chlamydia trachomatis A2497]
Length = 191
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 67/114 (58%), Gaps = 6/114 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M + M G+GL+APQVG ++ L + E +GE + V +NP + + S +++
Sbjct: 44 MSETMAFYKGVGLAAPQVGQSISLFIMGVERELEDGELVFCDFPRVFINPVITQKSEQLV 103
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
EGCLS PG+ +V RP+ + + A++++G +FS++L AR+ HE DHL
Sbjct: 104 YGNEGCLSIPGLRGEVARPDKITVSAKNLDGQQFSLALEGFLARIVMHETDHLH 157
>gi|170749551|ref|YP_001755811.1| peptide deformylase [Methylobacterium radiotolerans JCM 2831]
gi|170656073|gb|ACB25128.1| peptide deformylase [Methylobacterium radiotolerans JCM 2831]
Length = 171
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 62/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY G+GL+A Q+G+ +++ + E G + V +NP + S + Y+EGC
Sbjct: 35 MFETMYDAPGVGLAAIQIGVPKRVVTIDTSKEEGVRDARVFINPEIVWSSEEKRVYDEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP+ V++ RD++G + L + QHE DHL
Sbjct: 95 LSIPDYYAEVERPDRVRVKFRDLDGTEREIEADGLLSTCIQHEIDHL 141
>gi|124485018|ref|YP_001029634.1| peptide deformylase [Methanocorpusculum labreanum Z]
gi|124362559|gb|ABN06367.1| peptide deformylase [Methanocorpusculum labreanum Z]
Length = 162
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 60/108 (55%), Gaps = 7/108 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIV-LVNPRVNKYSNKMIPYEEG 59
M ++ + G+GL+APQVGI + V NP G+++ ++NP + K N EEG
Sbjct: 32 MVPMLKEHRGVGLAAPQVGIGKRFFVMNP------GDKVRRVINPEIMKTGNAFSEMEEG 85
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS PGIH V RP + + + G L D PARVF HE+DHL
Sbjct: 86 CLSVPGIHKKVRRPRRITVRYTNEAGELIEEELKDYPARVFLHEYDHL 133
>gi|71064611|ref|YP_263338.1| peptide deformylase [Psychrobacter arcticus 273-4]
gi|123734488|sp|Q4FVQ4.1|DEF_PSYA2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|71037596|gb|AAZ17904.1| peptide deformylase [Psychrobacter arcticus 273-4]
Length = 184
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +GIGL+A QV ++QL+V + ++ V +NP+V + PYEEGC
Sbjct: 35 MIETMYDAEGIGLAASQVDHHIQLIVMDLSEDKDSPR--VFINPKVTPLVEEKQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P ++ VERP V+I+A D NG + L A QHE DHL
Sbjct: 93 LSVPDVYDKVERPNKVRIEAIDQNGNAIDEEVEGLLAVCIQHEIDHL 139
>gi|410479886|ref|YP_006767523.1| N-formylmethionyl-tRNA deformylase [Leptospirillum ferriphilum
ML-04]
gi|406775138|gb|AFS54563.1| N-formylmethionyl-tRNA deformylase [Leptospirillum ferriphilum
ML-04]
Length = 177
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 66/114 (57%), Gaps = 3/114 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVF--NPVGERGEGEEIVLVNPRVNKYSNKMIPYEE 58
MF+++Y+ GIG++APQVG N++ VF N + G + ++NP ++ I EE
Sbjct: 35 MFELLYRVPGIGIAAPQVGCNMRFFVFDMNRRADPGSRTPVTMINPVISAKEGA-ITQEE 93
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112
GCLSFPGI VER ++I D+ G + L AR+ QHE DHL+ +L
Sbjct: 94 GCLSFPGIFVPVERALRIEIKGVDMEGKDLVLEGEGLFARLIQHEMDHLEGVLL 147
>gi|452750253|ref|ZP_21950005.1| peptide deformylase [Pseudomonas stutzeri NF13]
gi|452005903|gb|EMD98183.1| peptide deformylase [Pseudomonas stutzeri NF13]
Length = 168
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSEPR--VFINPEFESLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ V+I A D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVRIKALDRDGKPYELVAEGLLAVCIQHECDHL 139
>gi|37676994|ref|NP_937390.1| peptide deformylase [Vibrio vulnificus YJ016]
gi|39930924|sp|Q7MCQ2.1|DEF1_VIBVY RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|37201538|dbj|BAC97360.1| N-formylmethionyl-tRNA deformylase [Vibrio vulnificus YJ016]
Length = 168
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 67/108 (62%), Gaps = 4/108 (3%)
Query: 1 MFDVMYKTD-GIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
+ + +Y+TD G+GL+APQVG ++V + R E +VLVNP+V SNK + +EG
Sbjct: 34 LLETLYETDNGVGLAAPQVGREEAIVVIDLSENRDEP--LVLVNPKVVSGSNKEMG-QEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P +ADVER SV ++A D NG + S+ A V QHE DHL
Sbjct: 91 CLSVPDYYADVERYTSVVVEALDRNGKELRIETSEFLAIVMQHEIDHL 138
>gi|399007439|ref|ZP_10709948.1| peptide deformylase [Pseudomonas sp. GM17]
gi|398120202|gb|EJM09870.1| peptide deformylase [Pseudomonas sp. GM17]
Length = 168
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRSEPR--VFINPEFEALTDEMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ VKI A D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQRVKIRALDRDGQPYELIAEGLLAVCIQHECDHL 139
>gi|387812479|ref|YP_005427956.1| peptide deformylase [Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|381337486|emb|CCG93533.1| peptide deformylase [Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 167
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++ Q++V + ++ E V +NP+V ++ +EGC
Sbjct: 34 MFETMYDARGIGLAATQVDVHKQIIVMDLSEDKTEPR--VFINPKVEVLDGELEAMQEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + DV+R E +I ARD +G F + L A QHE DHL
Sbjct: 92 LSVPGFYEDVKRIEHCRITARDRDGKEFVLEAEGLLAVCIQHEMDHL 138
>gi|389680439|ref|ZP_10171789.1| peptide deformylase [Pseudomonas chlororaphis O6]
gi|388555544|gb|EIM18787.1| peptide deformylase [Pseudomonas chlororaphis O6]
Length = 168
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRSEPR--VFINPEFEPLTDEMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ VKI A D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQRVKIKALDRDGQPYELIAEGLLAVCIQHECDHL 139
>gi|288958776|ref|YP_003449117.1| peptide deformylase 2 [Azospirillum sp. B510]
gi|288911084|dbj|BAI72573.1| peptide deformylase 2 [Azospirillum sp. B510]
Length = 190
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI---VLVNPRVNKYSNKMIPYE 57
M M G+GL+APQV + +++VF +RGEGEE+ VLVNP + ++ M
Sbjct: 36 MIATMLDAPGVGLAAPQVSESCRIIVFRVPADRGEGEEVANTVLVNPVIEPLTDDMALGW 95
Query: 58 EGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
EGCLS PG+ V R ++ ++GAR S ARV QHE DHL
Sbjct: 96 EGCLSIPGLRGLVPRHTRIRYRGHGLDGARIEREASGFHARVVQHEVDHL 145
>gi|293611136|ref|ZP_06693434.1| peptide deformylase [Acinetobacter sp. SH024]
gi|375136707|ref|YP_004997357.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
binds Zn(II)) [Acinetobacter calcoaceticus PHEA-2]
gi|427422650|ref|ZP_18912825.1| peptide deformylase [Acinetobacter baumannii WC-136]
gi|292826387|gb|EFF84754.1| peptide deformylase [Acinetobacter sp. SH024]
gi|325124152|gb|ADY83675.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
binds Zn(II)) [Acinetobacter calcoaceticus PHEA-2]
gi|425700560|gb|EKU70142.1| peptide deformylase [Acinetobacter baumannii WC-136]
Length = 176
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QV ++QL+V + + + +V +NP++ + YEEGC
Sbjct: 35 MLETMYAAPGIGLAASQVDRHIQLIVID--LSESKDDPMVFINPKITPLTEDKQQYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P I+ VERP VKI+A ++ G F + L A QHE DHL
Sbjct: 93 LSVPQIYDKVERPSRVKIEAINLEGQAFELEADGLLAVCIQHEMDHL 139
>gi|398868370|ref|ZP_10623769.1| peptide deformylase [Pseudomonas sp. GM78]
gi|398233340|gb|EJN19274.1| peptide deformylase [Pseudomonas sp. GM78]
Length = 168
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRTEPR--VFINPEFEPLTDEMEQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ VK+ A D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVKVKALDRDGQPYELIAEGLLAVCIQHECDHL 139
>gi|392419120|ref|YP_006455724.1| peptide deformylase [Pseudomonas stutzeri CCUG 29243]
gi|390981308|gb|AFM31301.1| peptide deformylase [Pseudomonas stutzeri CCUG 29243]
Length = 168
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSEPR--VFINPEFESLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ V+I A D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVRIKALDRDGKPYEMVAEGLLAVCIQHECDHL 139
>gi|325955519|ref|YP_004239179.1| peptide deformylase [Weeksella virosa DSM 16922]
gi|323438137|gb|ADX68601.1| Peptide deformylase [Weeksella virosa DSM 16922]
Length = 190
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 66/118 (55%), Gaps = 11/118 (9%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGERG---------EGEEIVLVNPRVNKY 49
MFD MY ++G+GL+APQ+G ++++ V + P E E + + +NP+ +
Sbjct: 34 MFDTMYDSNGVGLAAPQIGKSIRMFVVDCRPFAEDEDNDEEKETLENFKKIFINPKKIET 93
Query: 50 SNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
+ EGCLS P IH DV RP+ + + D N + S + LPARV QHE+DHL
Sbjct: 94 FGDDWKFTEGCLSIPNIHEDVTRPDGITLTYLDENFVEHTESFTGLPARVIQHEYDHL 151
>gi|424867577|ref|ZP_18291359.1| Polypeptide deformylase [Leptospirillum sp. Group II 'C75']
gi|124516653|gb|EAY58161.1| Polypeptide deformylase [Leptospirillum rubarum]
gi|387221889|gb|EIJ76396.1| Polypeptide deformylase [Leptospirillum sp. Group II 'C75']
Length = 177
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 66/114 (57%), Gaps = 3/114 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVF--NPVGERGEGEEIVLVNPRVNKYSNKMIPYEE 58
MF+++Y+ GIG++APQVG N++ VF N + G + ++NP ++ I EE
Sbjct: 35 MFELLYRVPGIGIAAPQVGCNMRFFVFDMNRRADPGSRTPVTMINPVISAKEGA-ITQEE 93
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112
GCLSFPGI VER ++I D+ G + L AR+ QHE DHL+ +L
Sbjct: 94 GCLSFPGIFVPVERALRIEIKGVDMEGKDLVLEGEGLFARLIQHEMDHLEGVLL 147
>gi|182625873|ref|ZP_02953639.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721]
gi|177908907|gb|EDT71399.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721]
Length = 147
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 64/108 (59%), Gaps = 4/108 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + M++ +G+GL+APQVGI ++ V + + G V +NP + + S + EEGC
Sbjct: 35 MIETMHENNGVGLAAPQVGILKRIFVVDAMDGAGSR---VFINPEILEKSGEQTD-EEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG H V+R +KI A D+NG F + + AR QHE+DHL+
Sbjct: 91 LSLPGRHKPVKRANKIKIKALDVNGNEFVLDAEEFLARAIQHEYDHLE 138
>gi|146305096|ref|YP_001185561.1| peptide deformylase [Pseudomonas mendocina ymp]
gi|421502977|ref|ZP_15949929.1| peptide deformylase [Pseudomonas mendocina DLHK]
gi|166198520|sp|A4XNB3.1|DEF_PSEMY RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|145573297|gb|ABP82829.1| peptide deformylase [Pseudomonas mendocina ymp]
gi|400346434|gb|EJO94792.1| peptide deformylase [Pseudomonas mendocina DLHK]
Length = 168
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++ +++V + ++ E V +NP +++M Y+EGC
Sbjct: 35 MFETMYDAPGIGLAATQVNVHKRVVVMDLSEDKSEPR--VFINPEFESLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ VKI A D +G F + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVKIKALDRDGQPFELIAEGLLAVCIQHECDHL 139
>gi|258622314|ref|ZP_05717340.1| peptide deformylase [Vibrio mimicus VM573]
gi|258624834|ref|ZP_05719762.1| peptide deformylase [Vibrio mimicus VM603]
gi|262164774|ref|ZP_06032512.1| peptide deformylase [Vibrio mimicus VM223]
gi|262173015|ref|ZP_06040692.1| peptide deformylase [Vibrio mimicus MB-451]
gi|258582832|gb|EEW07653.1| peptide deformylase [Vibrio mimicus VM603]
gi|258585638|gb|EEW10361.1| peptide deformylase [Vibrio mimicus VM573]
gi|261890373|gb|EEY36360.1| peptide deformylase [Vibrio mimicus MB-451]
gi|262027154|gb|EEY45821.1| peptide deformylase [Vibrio mimicus VM223]
Length = 168
Score = 84.0 bits (206), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 66/108 (61%), Gaps = 4/108 (3%)
Query: 1 MFDVMYKTD-GIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
+ D +Y TD GIGL+APQVG ++V + R E +VL+NP+V SNK + +EG
Sbjct: 34 LLDTLYATDNGIGLAAPQVGREEAIVVIDLSDNRDE--PMVLINPKVVSGSNKEMG-QEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P +ADVER SV ++A D +G + SD A V QHE DHL
Sbjct: 91 CLSVPDYYADVERYTSVVVEALDRDGKPLKIESSDFLAIVMQHEIDHL 138
>gi|426400845|ref|YP_007019817.1| peptide deformylase [Candidatus Endolissoclinum patella L2]
gi|425857513|gb|AFX98549.1| peptide deformylase [Candidatus Endolissoclinum patella L2]
Length = 184
Score = 84.0 bits (206), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 61/112 (54%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+APQVG+ +++V + + + + L NP + S I YEEGC
Sbjct: 39 MLETMYDAPGIGLAAPQVGVTKRVIVLDVSKKDSQQAPLCLANPEIIWRSYDNITYEEGC 98
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112
LS P + DV+R +VK+ D NG + + L A QHE DH+ +L
Sbjct: 99 LSLPDFYTDVKRSAAVKVRYVDRNGHKQEIHAKGLLAICLQHEIDHINGILL 150
>gi|407767854|ref|ZP_11115233.1| peptide deformylase 1 [Thalassospira xiamenensis M-5 = DSM 17429]
gi|407288567|gb|EKF14044.1| peptide deformylase 1 [Thalassospira xiamenensis M-5 = DSM 17429]
Length = 172
Score = 84.0 bits (206), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 60/107 (56%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+APQ+G+ +++V + ++ + + + LVNP + S Y+EGC
Sbjct: 35 MLETMYAAPGIGLAAPQIGVMKRVVVMDVSDDKEKPQPLKLVNPEIIWESEDTSVYQEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +ADVERP V + D NG + L A QHE DHL
Sbjct: 95 LSIPEQYADVERPAEVGLRYLDENGKEHEIEADGLLATCIQHELDHL 141
>gi|15605076|ref|NP_219861.1| peptide deformylase [Chlamydia trachomatis D/UW-3/CX]
gi|76789079|ref|YP_328165.1| peptide deformylase [Chlamydia trachomatis A/HAR-13]
gi|166154565|ref|YP_001654683.1| peptide deformylase [Chlamydia trachomatis 434/Bu]
gi|166155440|ref|YP_001653695.1| peptide deformylase [Chlamydia trachomatis L2b/UCH-1/proctitis]
gi|237802778|ref|YP_002887972.1| peptide deformylase [Chlamydia trachomatis B/Jali20/OT]
gi|237804700|ref|YP_002888854.1| peptide deformylase [Chlamydia trachomatis B/TZ1A828/OT]
gi|255311158|ref|ZP_05353728.1| peptide deformylase [Chlamydia trachomatis 6276]
gi|255317459|ref|ZP_05358705.1| peptide deformylase [Chlamydia trachomatis 6276s]
gi|255506935|ref|ZP_05382574.1| peptide deformylase [Chlamydia trachomatis D(s)2923]
gi|301335828|ref|ZP_07224072.1| peptide deformylase [Chlamydia trachomatis L2tet1]
gi|339626023|ref|YP_004717502.1| peptide deformylase [Chlamydia trachomatis L2c]
gi|376282359|ref|YP_005156185.1| peptide deformylase [Chlamydia trachomatis A2497]
gi|385239867|ref|YP_005807709.1| peptide deformylase [Chlamydia trachomatis G/9768]
gi|385240790|ref|YP_005808631.1| peptide deformylase [Chlamydia trachomatis G/11222]
gi|385242643|ref|YP_005810482.1| peptide deformylase [Chlamydia trachomatis G/9301]
gi|385246253|ref|YP_005815075.1| peptide deformylase [Chlamydia trachomatis G/11074]
gi|389858045|ref|YP_006360287.1| peptide deformylase [Chlamydia trachomatis F/SW4]
gi|389859797|ref|YP_006362037.1| peptide deformylase [Chlamydia trachomatis F/SW5]
gi|6831532|sp|O84357.1|DEF_CHLTR RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|123606946|sp|Q3KM05.1|DEF_CHLTA RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|238687417|sp|B0B7S2.1|DEF_CHLT2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|238687475|sp|B0BBY7.1|DEF_CHLTB RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|3328774|gb|AAC67948.1| Polypeptide Deformylase [Chlamydia trachomatis D/UW-3/CX]
gi|76167609|gb|AAX50617.1| peptide deformylase [Chlamydia trachomatis A/HAR-13]
gi|83033878|gb|ABB97392.1| polypeptide deformylase [Chlamydia trachomatis]
gi|83033880|gb|ABB97393.1| polypeptide deformylase [Chlamydia trachomatis]
gi|165930553|emb|CAP04048.1| peptide deformylase [Chlamydia trachomatis 434/Bu]
gi|165931428|emb|CAP07002.1| peptide deformylase [Chlamydia trachomatis L2b/UCH-1/proctitis]
gi|231273000|emb|CAX09912.1| peptide deformylase [Chlamydia trachomatis B/TZ1A828/OT]
gi|231274012|emb|CAX10805.1| peptide deformylase [Chlamydia trachomatis B/Jali20/OT]
gi|296435872|gb|ADH18046.1| peptide deformylase [Chlamydia trachomatis G/9768]
gi|296436798|gb|ADH18968.1| peptide deformylase [Chlamydia trachomatis G/11222]
gi|296437732|gb|ADH19893.1| peptide deformylase [Chlamydia trachomatis G/11074]
gi|297140231|gb|ADH96989.1| peptide deformylase [Chlamydia trachomatis G/9301]
gi|339461132|gb|AEJ77635.1| peptide deformylase [Chlamydia trachomatis L2c]
gi|371908389|emb|CAX09018.1| peptide deformylase [Chlamydia trachomatis A2497]
gi|380249117|emb|CCE14409.1| peptide deformylase [Chlamydia trachomatis F/SW5]
gi|380249992|emb|CCE13520.1| peptide deformylase [Chlamydia trachomatis F/SW4]
gi|438690279|emb|CCP49536.1| peptide deformylase [Chlamydia trachomatis A/7249]
gi|438691363|emb|CCP48637.1| peptide deformylase [Chlamydia trachomatis A/5291]
gi|438692736|emb|CCP47738.1| peptide deformylase [Chlamydia trachomatis A/363]
gi|440525270|emb|CCP50521.1| peptide deformylase [Chlamydia trachomatis K/SotonK1]
gi|440526157|emb|CCP51641.1| peptide deformylase [Chlamydia trachomatis L2b/8200/07]
gi|440527055|emb|CCP52539.1| peptide deformylase [Chlamydia trachomatis D/SotonD1]
gi|440527946|emb|CCP53430.1| peptide deformylase [Chlamydia trachomatis D/SotonD5]
gi|440528837|emb|CCP54321.1| peptide deformylase [Chlamydia trachomatis D/SotonD6]
gi|440531519|emb|CCP57029.1| peptide deformylase [Chlamydia trachomatis F/SotonF3]
gi|440532411|emb|CCP57921.1| peptide deformylase [Chlamydia trachomatis G/SotonG1]
gi|440533304|emb|CCP58814.1| peptide deformylase [Chlamydia trachomatis Ia/SotonIa1]
gi|440534198|emb|CCP59708.1| peptide deformylase [Chlamydia trachomatis Ia/SotonIa3]
gi|440535982|emb|CCP61495.1| peptide deformylase [Chlamydia trachomatis L2b/795]
gi|440536874|emb|CCP62388.1| peptide deformylase [Chlamydia trachomatis L1/440/LN]
gi|440537764|emb|CCP63278.1| peptide deformylase [Chlamydia trachomatis L1/1322/p2]
gi|440538654|emb|CCP64168.1| peptide deformylase [Chlamydia trachomatis L1/115]
gi|440539543|emb|CCP65057.1| peptide deformylase [Chlamydia trachomatis L1/224]
gi|440540434|emb|CCP65948.1| peptide deformylase [Chlamydia trachomatis L2/25667R]
gi|440541323|emb|CCP66837.1| peptide deformylase [Chlamydia trachomatis L3/404/LN]
gi|440542210|emb|CCP67724.1| peptide deformylase [Chlamydia trachomatis L2b/UCH-2]
gi|440543101|emb|CCP68615.1| peptide deformylase [Chlamydia trachomatis L2b/Canada2]
gi|440543992|emb|CCP69506.1| peptide deformylase [Chlamydia trachomatis L2b/LST]
gi|440544882|emb|CCP70396.1| peptide deformylase [Chlamydia trachomatis L2b/Ams1]
gi|440545772|emb|CCP71286.1| peptide deformylase [Chlamydia trachomatis L2b/CV204]
gi|440914034|emb|CCP90451.1| peptide deformylase [Chlamydia trachomatis L2b/Ams2]
gi|440914924|emb|CCP91341.1| peptide deformylase [Chlamydia trachomatis L2b/Ams3]
gi|440915816|emb|CCP92233.1| peptide deformylase [Chlamydia trachomatis L2b/Canada1]
gi|440916710|emb|CCP93127.1| peptide deformylase [Chlamydia trachomatis L2b/Ams4]
gi|440917600|emb|CCP94017.1| peptide deformylase [Chlamydia trachomatis L2b/Ams5]
Length = 181
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 67/114 (58%), Gaps = 6/114 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M + M G+GL+APQVG ++ L + E +GE + V +NP + + S +++
Sbjct: 34 MSETMAFYKGVGLAAPQVGQSISLFIMGVERELEDGELVFCDFPRVFINPVITQKSEQLV 93
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
EGCLS PG+ +V RP+ + + A++++G +FS++L AR+ HE DHL
Sbjct: 94 YGNEGCLSIPGLRGEVARPDKITVSAKNLDGQQFSLALEGFLARIVMHETDHLH 147
>gi|255348717|ref|ZP_05380724.1| peptide deformylase [Chlamydia trachomatis 70]
gi|255503257|ref|ZP_05381647.1| peptide deformylase [Chlamydia trachomatis 70s]
gi|385241723|ref|YP_005809563.1| peptide deformylase [Chlamydia trachomatis E/11023]
gi|385245330|ref|YP_005814153.1| peptide deformylase [Chlamydia trachomatis E/150]
gi|386262706|ref|YP_005815985.1| peptide deformylase [Chlamydia trachomatis Sweden2]
gi|389858921|ref|YP_006361162.1| peptide deformylase [Chlamydia trachomatis E/SW3]
gi|289525394|emb|CBJ14871.1| peptide deformylase [Chlamydia trachomatis Sweden2]
gi|296434946|gb|ADH17124.1| peptide deformylase [Chlamydia trachomatis E/150]
gi|296438666|gb|ADH20819.1| peptide deformylase [Chlamydia trachomatis E/11023]
gi|380250870|emb|CCE12631.1| peptide deformylase [Chlamydia trachomatis E/SW3]
gi|440529729|emb|CCP55213.1| peptide deformylase [Chlamydia trachomatis E/SotonE4]
gi|440530628|emb|CCP56112.1| peptide deformylase [Chlamydia trachomatis E/SotonE8]
gi|440535096|emb|CCP60606.1| peptide deformylase [Chlamydia trachomatis E/Bour]
Length = 181
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 67/114 (58%), Gaps = 6/114 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M + M G+GL+APQVG ++ L + E +GE + V +NP + + S +++
Sbjct: 34 MSETMAFYKGVGLAAPQVGQSISLFIMGVERELEDGELVFCDFPRVFINPVITQKSEQLV 93
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
EGCLS PG+ +V RP+ + + A++++G +FS++L AR+ HE DHL
Sbjct: 94 YGNEGCLSIPGLRGEVARPDKITVSAKNLDGQQFSLALEGFLARIVMHETDHLH 147
>gi|407801721|ref|ZP_11148564.1| peptide deformylase [Alcanivorax sp. W11-5]
gi|407024038|gb|EKE35782.1| peptide deformylase [Alcanivorax sp. W11-5]
Length = 168
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QV ++ +L+V + ER + +V +NP + ++ Y+EGC
Sbjct: 35 MIETMYDASGIGLAATQVNVHQRLLVLDVSEERDQP--LVFINPEITPLTDDTKTYDEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + VERP+ V++ A + +G F + L A QHE DHL
Sbjct: 93 LSVPGFYETVERPDRVRVKALNRDGDVFEMDCDGLLAVCLQHEIDHL 139
>gi|388544127|ref|ZP_10147416.1| peptide deformylase [Pseudomonas sp. M47T1]
gi|388277955|gb|EIK97528.1| peptide deformylase [Pseudomonas sp. M47T1]
Length = 168
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R +V +NP + +M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRSAP--MVFINPEFESLTEEMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ VKI A+D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQRVKIKAQDRDGKPYELIAEGLLAVCIQHECDHL 139
>gi|423014486|ref|ZP_17005207.1| peptide deformylase [Achromobacter xylosoxidans AXX-A]
gi|338782489|gb|EGP46862.1| peptide deformylase [Achromobacter xylosoxidans AXX-A]
Length = 170
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 66/113 (58%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY G+GL+A QV ++ +++V + E + +VL+NP + +S+ YEEGC
Sbjct: 35 MADTMYDAPGVGLAATQVDVHERVVVIDVSEESNQL--LVLINPEITWHSDDYKIYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PGI+ +VER ++ A DI+G F L A QHE DHL+ VFV
Sbjct: 93 LSVPGIYDEVERASRIRCKALDIDGKPFEFEADGLLAVCVQHELDHLEGKVFV 145
>gi|398841293|ref|ZP_10598516.1| peptide deformylase [Pseudomonas sp. GM102]
gi|398862313|ref|ZP_10617923.1| peptide deformylase [Pseudomonas sp. GM79]
gi|398108801|gb|EJL98750.1| peptide deformylase [Pseudomonas sp. GM102]
gi|398230960|gb|EJN16964.1| peptide deformylase [Pseudomonas sp. GM79]
Length = 168
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 66/107 (61%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP ++++ Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRSEPR--VFINPEFEVLTDEVDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ VKI A+D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVKIKAQDRDGQPYELIAEGLLAVCIQHECDHL 139
>gi|420240715|ref|ZP_14744917.1| peptide deformylase [Rhizobium sp. CF080]
gi|398075470|gb|EJL66583.1| peptide deformylase [Rhizobium sp. CF080]
Length = 171
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 62/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +L+V + E E + V +NP + + S+++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRLLVVDVAREGEEKQPQVFINPEIVRSSDEIAVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP +V + +G + V L A QHE DHL
Sbjct: 95 LSIPEYYAEVERPATVSVRHLGRDGKEYVVEADGLLATCLQHEIDHL 141
>gi|206603587|gb|EDZ40067.1| Polypeptide deformylase [Leptospirillum sp. Group II '5-way CG']
Length = 177
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 66/114 (57%), Gaps = 3/114 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVF--NPVGERGEGEEIVLVNPRVNKYSNKMIPYEE 58
MF+++Y+ GIG++APQVG N++ VF N + G + ++NP ++ I EE
Sbjct: 35 MFELLYRVPGIGIAAPQVGCNMRFFVFDMNRRADPGSRTPVTIINPVISAKEGS-ITQEE 93
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112
GCLSFPGI VER ++I D+ G + L AR+ QHE DHL+ +L
Sbjct: 94 GCLSFPGIFVPVERALRIEIKGVDMEGKDLVLEGEGLFARLIQHEMDHLEGVLL 147
>gi|422316180|ref|ZP_16397580.1| peptide deformylase [Fusobacterium periodonticum D10]
gi|404591426|gb|EKA93572.1| peptide deformylase [Fusobacterium periodonticum D10]
Length = 174
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 64/107 (59%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+TDGIGL+APQVG++ ++ V E G G+ ++NP + + + +EEGC
Sbjct: 36 MVETMYETDGIGLAAPQVGVSKRVFVC----EDGSGKIRKIINPVIEPLTEETQEFEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PGI+ VERP+ V + + NG +L A V QHE DHL
Sbjct: 92 LSVPGIYKKVERPKKVMLKYLNENGEAVEEIAEELLAVVVQHENDHL 138
>gi|395789111|ref|ZP_10468641.1| peptide deformylase [Bartonella taylorii 8TBB]
gi|395431245|gb|EJF97272.1| peptide deformylase [Bartonella taylorii 8TBB]
Length = 176
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 63/107 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY G+GL+A Q+GI ++++V + + +V++NP + S++ Y+EGC
Sbjct: 35 MLDTMYNAQGVGLAAIQIGIPLRMLVIDVSRDDISKNPLVVINPEILWLSDERNTYKEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP+ + + +D G + + DL A QHE DHL
Sbjct: 95 LSIPEYYAEVERPKRLCVRYQDRQGKQTEIEADDLLATCLQHEIDHL 141
>gi|86137255|ref|ZP_01055833.1| peptide deformylase [Roseobacter sp. MED193]
gi|85826579|gb|EAQ46776.1| peptide deformylase [Roseobacter sp. MED193]
Length = 168
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 60/111 (54%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY G GL+APQVG+ +L V + + G +V++NP + +EGC
Sbjct: 33 MFETMYAAPGRGLAAPQVGVLKRLFVMDATWKEAPGTPLVMINPEFLSVGADLESGDEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQVFV 111
LS PG+ V RP++V + +D + S S AR QHE+DHL+ V
Sbjct: 93 LSIPGVLTSVPRPKTVSLRWQDQDRNWTSGSFDGFAARCIQHEYDHLEGLV 143
>gi|300722039|ref|YP_003711319.1| peptide deformylase [Xenorhabdus nematophila ATCC 19061]
gi|297628536|emb|CBJ89108.1| peptide deformylase [Xenorhabdus nematophila ATCC 19061]
Length = 168
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 68/108 (62%), Gaps = 4/108 (3%)
Query: 1 MFDVMYKTD-GIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
M + MY TD GIGL+APQVG ++V + +R + VLVNP++ + +++ +EG
Sbjct: 34 MLETMYATDNGIGLAAPQVGRKEAVLVIDLSPDRDKP--TVLVNPKIVEKERRVV-NQEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS PG +ADVER E VK++A D G + ++ D + V QHE DHL
Sbjct: 91 CLSIPGYYADVERFEKVKVEAFDRQGNQTTIESEDFLSIVMQHEIDHL 138
>gi|218672914|ref|ZP_03522583.1| peptide deformylase [Rhizobium etli GR56]
Length = 171
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 60/107 (56%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E + V +NP + K S++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRMLVIDVSREGEEKQPQVFINPEIVKSSDERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP V + D NG V L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPAVVSVKYLDRNGKEQMVEADGLLATCLQHEIDHL 141
>gi|415915652|ref|ZP_11553890.1| Peptide deformylase [Herbaspirillum frisingense GSF30]
gi|407761641|gb|EKF70663.1| Peptide deformylase [Herbaspirillum frisingense GSF30]
Length = 172
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 68/113 (60%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+A QV ++ Q++V + V + G+ + V +NP + S + Y+EGC
Sbjct: 35 MAETMYAAPGVGLAATQVDVHEQVVVID-VSDEGKNLQ-VFINPEILWASEEKRVYDEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LS PGI+ VERP VK+ A D +G F + DL A QHE DHL +VFV
Sbjct: 93 LSVPGIYDGVERPARVKVRAFDADGKAFELDADDLLAVCIQHEMDHLKGKVFV 145
>gi|371777658|ref|ZP_09483980.1| peptide deformylase [Anaerophaga sp. HS1]
Length = 185
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI-----VLVNPRVNKYSNKMIP 55
MF+ MY DGIGL+ PQ+G++ ++ V + + E+ V +N R+ + + +
Sbjct: 35 MFETMYNADGIGLAGPQIGLSKRIFVIDATPLAEDFPELTNFKKVFINARIIERDGEPVS 94
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
+EGCLS PGI DVERP +KI D++ + ARV QHE+DH+Q
Sbjct: 95 DQEGCLSIPGISEDVERPTKIKIRYVDVDFNEYEEVYEGWAARVIQHEYDHIQ 147
>gi|374313843|ref|YP_005060272.1| polypeptide deformylase [Serratia symbiotica str. 'Cinara cedri']
gi|363988069|gb|AEW44260.1| polypeptide deformylase [Serratia symbiotica str. 'Cinara cedri']
Length = 170
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 63/107 (58%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY +GIGL+A Q+ I+ +++V + R +G+ VL+NP + + S + EEGC
Sbjct: 35 MFDTMYSKEGIGLAATQIDIHQRIIVMDISKNRDQGQ--VLINPEILETSG-VTSIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + A V R VK+ A +NG F + DL A QHE DHL
Sbjct: 92 LSIPNLRALVPRAAYVKVCALSVNGKYFELEAYDLLAICIQHEMDHL 138
>gi|260574965|ref|ZP_05842967.1| peptide deformylase [Rhodobacter sp. SW2]
gi|259022970|gb|EEW26264.1| peptide deformylase [Rhodobacter sp. SW2]
Length = 163
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 55/107 (51%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY G GL+APQ+GI ++ V + + G VLVNP + S EGC
Sbjct: 34 MLATMYAATGRGLAAPQIGILQRVFVMDTGWKEGRPAPQVLVNPEILWRSEACKTVAEGC 93
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PGI D+ RP +++ RD++G L+ A QHE DHL
Sbjct: 94 LSLPGISPDISRPAEIRLRWRDLDGTPHEAHLTGFAATCAQHEIDHL 140
>gi|157692252|ref|YP_001486714.1| peptide deformylase [Bacillus pumilus SAFR-032]
gi|157681010|gb|ABV62154.1| formylmethionine deformylase [Bacillus pumilus SAFR-032]
Length = 160
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 62/107 (57%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M + DG+GL+APQ+GI+ ++ V + +GE E I LVNP V + E GC
Sbjct: 35 MYDTMLELDGVGLAAPQIGISQRIAVVD-IGE--ESGRIDLVNPEVLEVKGSQTDIE-GC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFP ++ VERP VK+ A D G F++ AR HE DHL
Sbjct: 91 LSFPSLYGTVERPSYVKVKAFDKKGKPFTIEAEGFLARALLHEIDHL 137
>gi|429205990|ref|ZP_19197258.1| Peptide deformylase [Rhodobacter sp. AKP1]
gi|428190711|gb|EKX59255.1| Peptide deformylase [Rhodobacter sp. AKP1]
Length = 177
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGER-GEGEEIVLVNPRVNKYSNKMIPYEEG 59
M MY GIGL+APQVG+ +L+V + E G + +VNP V S + YEEG
Sbjct: 34 MLATMYDAPGIGLAAPQVGVTRRLIVLDCNKESDGARRPVAMVNPEVVWRSEDVSTYEEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P + A+VERP VK+ ++G + L A QHE DHL
Sbjct: 94 CLSLPNVFAEVERPAEVKVRWTGLDGRDEEEQFAGLWATCVQHEIDHL 141
>gi|171464332|ref|YP_001798445.1| peptide deformylase [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|238692833|sp|B1XSN2.1|DEF_POLNS RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|171193870|gb|ACB44831.1| peptide deformylase [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 171
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 66/113 (58%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY+ G+GL+A QV I+ +++V + E + E +V +NP + S++ + EGC
Sbjct: 35 MADTMYEAPGVGLAATQVDIHERIVVIDVSDE--QNELMVFINPEIVWTSSETKSWREGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS P + +VERP +++ A DI+G F + A QHE DHLQ VFV
Sbjct: 93 LSVPEFYDEVERPAEIRVKALDIDGKEFEIEADGSLAVCLQHELDHLQGKVFV 145
>gi|398878984|ref|ZP_10634088.1| peptide deformylase [Pseudomonas sp. GM67]
gi|398883314|ref|ZP_10638271.1| peptide deformylase [Pseudomonas sp. GM60]
gi|398196976|gb|EJM83966.1| peptide deformylase [Pseudomonas sp. GM60]
gi|398197893|gb|EJM84865.1| peptide deformylase [Pseudomonas sp. GM67]
Length = 168
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRTEPR--VFINPEFEPLTDEMEQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ VK+ A D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVKVKALDRDGQPYELIAEGLLAVCIQHECDHL 139
>gi|395495802|ref|ZP_10427381.1| peptide deformylase [Pseudomonas sp. PAMC 25886]
Length = 168
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E +V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHQRVVVMDLSEDRSEP--LVFINPEFETLTDEMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + +V+RP+ VKI A D +G F + L A QHE DHL
Sbjct: 93 LSVPDFYENVDRPQRVKIKALDRDGKPFEMIAEGLLAVCIQHECDHL 139
>gi|398336920|ref|ZP_10521625.1| peptide deformylase [Leptospira kmetyi serovar Malaysia str.
Bejo-Iso9]
Length = 178
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 64/112 (57%), Gaps = 5/112 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVF-NPVGERGEGE----EIVLVNPRVNKYSNKMIP 55
MFD M DG+GL+APQ+GI Q++V + ER G E V++NP + +N
Sbjct: 38 MFDTMRHADGVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPERVILNPIITPLTNDTSG 97
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
+ EGCLS PG+ VERP +++ D G RF ++ A V+QHE DHL
Sbjct: 98 FWEGCLSVPGMRGYVERPNKIRMQWMDEKGNRFDETIDGYKAVVYQHECDHL 149
>gi|408379935|ref|ZP_11177526.1| peptide deformylase [Agrobacterium albertimagni AOL15]
gi|407746312|gb|EKF57837.1| peptide deformylase [Agrobacterium albertimagni AOL15]
Length = 170
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 61/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ GIGL+A QVG+ +L+V + E E +V +NP + K S++ YEEGC
Sbjct: 35 MLETMYEAPGIGLAAIQVGVPRRLLVIDLAKEGEEPAPLVYINPEIIKSSDERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP S+ + + +G L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPASITVKSIGRDGKETVTEADGLLATCLQHEIDHL 141
>gi|338730832|ref|YP_004660224.1| peptide deformylase [Thermotoga thermarum DSM 5069]
gi|335365183|gb|AEH51128.1| peptide deformylase [Thermotoga thermarum DSM 5069]
Length = 168
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 65/108 (60%), Gaps = 6/108 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
+F+ MY+ DG+GL+APQVG+++++ V + +G +NP++ S + + EEGC
Sbjct: 33 LFETMYQYDGVGLAAPQVGVSLRIFVMD------DGTPRAFINPKIIYASPEKVVDEEGC 86
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG+ +VER + V + D NG D AR+ QHE+DHL+
Sbjct: 87 LSIPGVFENVERSKEVIVRYIDENGQEREEKFIDRSARIVQHEYDHLE 134
>gi|261378988|ref|ZP_05983561.1| peptide deformylase [Neisseria cinerea ATCC 14685]
gi|269144603|gb|EEZ71021.1| peptide deformylase [Neisseria cinerea ATCC 14685]
Length = 167
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 68/113 (60%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + + + YEEGC
Sbjct: 35 MFETMYEARGIGLAATQVDVHERIVVMDLTEDRSEPR--VFINPVIVEKDGET-TYEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PGI+ V R ESVK++A + G +F++ L A QHE DHL VFV
Sbjct: 92 LSVPGIYDTVTRAESVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFV 144
>gi|302341791|ref|YP_003806320.1| peptide deformylase [Desulfarculus baarsii DSM 2075]
gi|301638404|gb|ADK83726.1| peptide deformylase [Desulfarculus baarsii DSM 2075]
Length = 170
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 1/107 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY G+GL+APQVG ++++V + + G +VL+NPRV +++ ++E C
Sbjct: 35 MIDTMYDAPGVGLAAPQVGRAIRMVVVDTAEDDKRGTPMVLINPRVVAKRGQLV-WDEAC 93
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P ADV R V ++A D+ G + L A QHE DHL
Sbjct: 94 LSVPDYRADVVRASEVVVEAGDLEGNDLRIEAEGLTAVCLQHEIDHL 140
>gi|88705378|ref|ZP_01103089.1| Formylmethionine deformylase [Congregibacter litoralis KT71]
gi|88700468|gb|EAQ97576.1| Formylmethionine deformylase [Congregibacter litoralis KT71]
Length = 168
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ GIGL+A QV ++ +L+V + R + +V +NP V + + Y+EGC
Sbjct: 35 MIETMYEASGIGLAATQVNVHKRLLVLDISENRDQ--PMVFINPEVTVLDDTLGSYDEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V RP V+++A +G FS L L A QHE DHL
Sbjct: 93 LSVPGFYEEVNRPRKVRVEALGRDGESFSQELDGLAAICLQHEIDHL 139
>gi|254487738|ref|ZP_05100943.1| peptide deformylase [Roseobacter sp. GAI101]
gi|214044607|gb|EEB85245.1| peptide deformylase [Roseobacter sp. GAI101]
Length = 174
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
M MY GIGL+APQ+G+ +L+V + V E GE +++ NP V S+ YEEG
Sbjct: 36 MLATMYDAPGIGLAAPQIGVLNRLIVMDCVKEEGEKPRPLIMFNPEVIASSDIESTYEEG 95
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P ADV RP V + D +G + + S L A QHE DHL
Sbjct: 96 CLSIPDQFADVTRPAEVDVRWIDRDGNEHTETFSKLWATCVQHEIDHL 143
>gi|374607063|ref|ZP_09679869.1| peptide deformylase [Paenibacillus dendritiformis C454]
gi|374387335|gb|EHQ58851.1| peptide deformylase [Paenibacillus dendritiformis C454]
Length = 160
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 64/107 (59%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY +G+GL+APQ+GI +++V + E G I ++NP + K + + EGC
Sbjct: 35 MADTMYHAEGVGLAAPQIGILKRVIVVDVGDEHGL---IEMINPVILKAEGEQLG-PEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV R + + + D +G F+V SD AR FQHE DHL
Sbjct: 91 LSIPGLNGDVRRHQHITVQGLDRHGNTFTVEASDFLARAFQHEIDHL 137
>gi|229086420|ref|ZP_04218596.1| Peptide deformylase [Bacillus cereus Rock3-44]
gi|228696936|gb|EEL49745.1| Peptide deformylase [Bacillus cereus Rock3-44]
Length = 124
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 67/109 (61%), Gaps = 6/109 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRV-NKYSNKMIPYEEG 59
M + M DG+GL+APQVG+++Q+ V + + G+ I L+NP + K ++ P EG
Sbjct: 1 MHETMLVADGVGLAAPQVGVSLQVAVVDIGDDTGK---IELINPVILEKRGEQVGP--EG 55
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
CLSFPG++ +VER E +K+ A++ G F + D AR QHE DHL
Sbjct: 56 CLSFPGLYGEVERAEYIKVRAQNRRGKIFLLEADDFLARAIQHEIDHLH 104
>gi|84500579|ref|ZP_00998828.1| peptide deformylase [Oceanicola batsensis HTCC2597]
gi|84391532|gb|EAQ03864.1| peptide deformylase [Oceanicola batsensis HTCC2597]
Length = 172
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERG-EGEEIVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+ PQ+G+ +L+V + V E +V+ NPRV S++ YEEG
Sbjct: 34 MLETMYDAPGIGLAGPQIGLMARLIVLDCVKEETLPPRPLVMFNPRVVASSDEKSVYEEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P +A+VERP V ++ D +G S L A QHE DHL
Sbjct: 94 CLSIPDQYAEVERPAEVTVEWLDRDGVLQEESFDGLWATCVQHEIDHL 141
>gi|158422422|ref|YP_001523714.1| polypeptide or peptide deformylase family protein [Azorhizobium
caulinodans ORS 571]
gi|158329311|dbj|BAF86796.1| polypeptide or peptide deformylase family protein [Azorhizobium
caulinodans ORS 571]
Length = 172
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 59/107 (55%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QVG++ +++ + E IVL+NP V S + Y EGC
Sbjct: 35 MLETMYDAPGIGLAAIQVGVHKRVITIDIAREDAPKNPIVLINPEVVSASEETSFYNEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + +VERP V + +D+ GA ++ L A QHE DHL
Sbjct: 95 LSIPEYYEEVERPAQVTVRYQDLKGATHEIAADGLLATCLQHEIDHL 141
>gi|15835247|ref|NP_297006.1| peptide deformylase [Chlamydia muridarum Nigg]
gi|270285419|ref|ZP_06194813.1| peptide deformylase [Chlamydia muridarum Nigg]
gi|270289433|ref|ZP_06195735.1| peptide deformylase [Chlamydia muridarum Weiss]
gi|301336816|ref|ZP_07225018.1| peptide deformylase [Chlamydia muridarum MopnTet14]
gi|13878461|sp|Q9PK41.1|DEF_CHLMU RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|7190671|gb|AAF39461.1| polypeptide deformylase [Chlamydia muridarum Nigg]
Length = 181
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 66/114 (57%), Gaps = 6/114 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M + M G+GL+APQVG +V L + E +GE I V +NP + + S +++
Sbjct: 34 MSETMTFYKGVGLAAPQVGHSVALFIMGVEKELDDGELIFCDFPKVFINPVITQKSEQLV 93
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
EGCLS PG+ +V RP+ + + A++++G FS++L AR+ HE DHL
Sbjct: 94 YGNEGCLSIPGLRGEVARPDKITVTAKNLDGQPFSMTLEGFLARIVMHETDHLH 147
>gi|397691411|ref|YP_006528665.1| peptide deformylase [Melioribacter roseus P3M]
gi|395812903|gb|AFN75652.1| peptide deformylase [Melioribacter roseus P3M]
Length = 180
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERG--EGEEIVLVNPRVNKYSNKMIPYEE 58
MF+ M K G+GL+A QVGI+ + V + G + + +V++NP + + S++ + EE
Sbjct: 35 MFETMRKAYGVGLAANQVGIDKSIFVIDLKDVEGYEKFKPLVMINPEIIEESDEFVSMEE 94
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
GCLS P + ADVERP+ +K+ D + + SD ARV HE+DHL
Sbjct: 95 GCLSLPTLRADVERPKEIKVRYLDTDENIQEMEASDFLARVILHEYDHL 143
>gi|146280418|ref|YP_001170571.1| peptide deformylase [Pseudomonas stutzeri A1501]
gi|339492105|ref|YP_004712398.1| peptide deformylase [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
gi|386018662|ref|YP_005936686.1| peptide deformylase [Pseudomonas stutzeri DSM 4166]
gi|158514117|sp|A4VFH8.1|DEF_PSEU5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|145568623|gb|ABP77729.1| polypeptide deformylase [Pseudomonas stutzeri A1501]
gi|327478634|gb|AEA81944.1| peptide deformylase [Pseudomonas stutzeri DSM 4166]
gi|338799477|gb|AEJ03309.1| peptide deformylase [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
Length = 168
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSEPR--VFINPEFEPLTDQMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ V+I A D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVRIKALDRDGKPYELIAEGLLAVCIQHECDHL 139
>gi|152976233|ref|YP_001375750.1| peptide deformylase [Bacillus cytotoxicus NVH 391-98]
gi|152024985|gb|ABS22755.1| peptide deformylase [Bacillus cytotoxicus NVH 391-98]
Length = 158
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 68/109 (62%), Gaps = 6/109 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRV-NKYSNKMIPYEEG 59
M++ M DG+GL+APQVG+++Q+ V + + G+ I L+NP + K ++ P EG
Sbjct: 35 MYETMVAADGVGLAAPQVGVSLQVAVIDIGDDTGK---IELINPVILEKRGEQVGP--EG 89
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
CLSFPG++ +VER E +K+ A++ G F + + AR QHE DHL
Sbjct: 90 CLSFPGLYGEVERAEYIKVRAQNRRGKIFLLEANGFLARAIQHEIDHLH 138
>gi|332533677|ref|ZP_08409536.1| peptide deformylase [Pseudoalteromonas haloplanktis ANT/505]
gi|332036841|gb|EGI73302.1| peptide deformylase [Pseudoalteromonas haloplanktis ANT/505]
Length = 168
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +GIGL+A QV I+ +++V + ER E +VL+NP++ K + EEGC
Sbjct: 35 MLETMYDENGIGLAATQVDIHQRIVVIDVSEERNEP--LVLINPQIIKKDGSTVS-EEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS P +A V+R E+V + A + NG F + +L A QHE DHLQ
Sbjct: 92 LSVPNSYAKVDRAETVTVAALNENGEEFVLDADELLAICIQHELDHLQ 139
>gi|90019670|ref|YP_525497.1| peptide deformylase [Saccharophagus degradans 2-40]
gi|123090994|sp|Q21PV5.1|DEF_SACD2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|89949270|gb|ABD79285.1| peptide deformylase [Saccharophagus degradans 2-40]
Length = 172
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++ Q++V + +GE + E +V +NP + + YEEGC
Sbjct: 35 MFETMYDAPGIGLAATQVNVHEQVLVID-LGEETK-EPMVFINPSIEILDQEHYEYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + V RP+ +++ A D +G F + L A QHE DHL
Sbjct: 93 LSVPGFYEQVSRPKHIRVTALDRDGKEFVIEPEGLLAVCVQHEMDHL 139
>gi|15894999|ref|NP_348348.1| peptide deformylase [Clostridium acetobutylicum ATCC 824]
gi|337736940|ref|YP_004636387.1| peptide deformylase [Clostridium acetobutylicum DSM 1731]
gi|384458447|ref|YP_005670867.1| peptide deformylase [Clostridium acetobutylicum EA 2018]
gi|3023622|sp|O05100.1|DEF1_CLOAB RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|15024688|gb|AAK79688.1|AE007681_9 N-formylmethionyl-tRNA deformylase [Clostridium acetobutylicum ATCC
824]
gi|1905954|gb|AAB50347.1| deformylase [Clostridium acetobutylicum ATCC 824]
gi|325509136|gb|ADZ20772.1| peptide deformylase [Clostridium acetobutylicum EA 2018]
gi|336292911|gb|AEI34045.1| peptide deformylase [Clostridium acetobutylicum DSM 1731]
Length = 150
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 62/107 (57%), Gaps = 6/107 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY DG+GL+APQVGI +L+V + GEG +VL+NP + + S K + E GC
Sbjct: 35 MFETMYNADGVGLAAPQVGILKRLVVIDV----GEGP-VVLINPEILETSGKAVDVE-GC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +VERP VK A + G + DL AR HE DHL
Sbjct: 89 LSIPERQGEVERPTYVKAKALNEKGEEIVIEAEDLFARAICHETDHL 135
>gi|394993910|ref|ZP_10386649.1| peptide deformylase [Bacillus sp. 916]
gi|393805234|gb|EJD66614.1| peptide deformylase [Bacillus sp. 916]
Length = 160
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 64/107 (59%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M + DG+GL+APQ+GI + V + +GE E I LVNP + + S + E GC
Sbjct: 35 MYDTMLEMDGVGLAAPQIGILKRAAVVD-IGE--ESGRIDLVNPVILEKSGEQTGVE-GC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFPG++ DV RP+ VK+ A + G F + AR QHE DHL
Sbjct: 91 LSFPGVYGDVTRPDYVKVKAYNRKGKPFILEAEGFLARAVQHEMDHL 137
>gi|384227911|ref|YP_005619656.1| peptide deformylase [Buchnera aphidicola str. Ak (Acyrthosiphon
kondoi)]
gi|345538851|gb|AEO08828.1| peptide deformylase [Buchnera aphidicola str. Ak (Acyrthosiphon
kondoi)]
Length = 171
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY+ +GIGL+A QV I +Q++V N + E E +VL+NP++ K I EEGC
Sbjct: 35 MIDTMYQEEGIGLAATQVNIQLQIIVINTMEE--EKNNLVLINPKIIKKEGN-ISIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS P A + R +K+ A +I G + + + + QHE DHLQ
Sbjct: 92 LSIPEYRASIPRYNYIKVQAINIYGEKIEIEAESILSICIQHEIDHLQ 139
>gi|395800088|ref|ZP_10479367.1| peptide deformylase [Pseudomonas sp. Ag1]
gi|421140895|ref|ZP_15600891.1| peptide deformylase [Pseudomonas fluorescens BBc6R8]
gi|395335930|gb|EJF67792.1| peptide deformylase [Pseudomonas sp. Ag1]
gi|404508097|gb|EKA22071.1| peptide deformylase [Pseudomonas fluorescens BBc6R8]
Length = 168
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E +V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVDVHQRVVVMDLSEDRSEP--LVFINPEFETLTDEMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + +V+RP+ VKI A D +G F + L A QHE DHL
Sbjct: 93 LSVPDFYENVDRPQRVKIKALDRDGKPFEMIAEGLLAVCIQHECDHL 139
>gi|254476440|ref|ZP_05089826.1| peptide deformylase [Ruegeria sp. R11]
gi|214030683|gb|EEB71518.1| peptide deformylase [Ruegeria sp. R11]
Length = 169
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 58/111 (52%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY G GL+APQVG+ ++ V + + G ++ +NP + S++ + EGC
Sbjct: 34 MLDTMYGAPGRGLAAPQVGVLQRVFVMDTTWKDGTRAPLICINPEIKDRSDRHVSGPEGC 93
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQVFV 111
LS PG+ VER E V ++ D+ G R A QHE+DHL V
Sbjct: 94 LSIPGVSLTVERSEWVDLEWSDLQGVRHCRRFDGFDAICIQHEYDHLDGIV 144
>gi|15639744|ref|NP_219194.1| polypeptide deformylase (def) [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189025982|ref|YP_001933754.1| polypeptide deformylase [Treponema pallidum subsp. pallidum SS14]
gi|338706709|ref|YP_004673477.1| peptide deformylase [Treponema paraluiscuniculi Cuniculi A]
gi|378973266|ref|YP_005221872.1| peptide deformylase [Treponema pallidum subsp. pertenue str.
SamoaD]
gi|378974333|ref|YP_005222941.1| peptide deformylase [Treponema pallidum subsp. pertenue str.
Gauthier]
gi|378975391|ref|YP_005224001.1| peptide deformylase [Treponema pallidum subsp. pallidum DAL-1]
gi|378982242|ref|YP_005230549.1| peptide deformylase [Treponema pallidum subsp. pertenue str. CDC2]
gi|384422253|ref|YP_005631612.1| peptide deformylase [Treponema pallidum subsp. pallidum str.
Chicago]
gi|408502613|ref|YP_006870057.1| peptide deformylase [Treponema pallidum subsp. pallidum str. Mexico
A]
gi|6014952|sp|O83738.1|DEF_TREPA RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|238689341|sp|B2S3Z6.1|DEF_TREPS RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|3323063|gb|AAC65724.1| polypeptide deformylase (def) [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189018557|gb|ACD71175.1| polypeptide deformylase [Treponema pallidum subsp. pallidum SS14]
gi|291060119|gb|ADD72854.1| peptide deformylase [Treponema pallidum subsp. pallidum str.
Chicago]
gi|335344770|gb|AEH40686.1| peptide deformylase [Treponema paraluiscuniculi Cuniculi A]
gi|374677591|gb|AEZ57884.1| peptide deformylase [Treponema pallidum subsp. pertenue str.
SamoaD]
gi|374678661|gb|AEZ58953.1| peptide deformylase [Treponema pallidum subsp. pertenue str. CDC2]
gi|374679730|gb|AEZ60021.1| peptide deformylase [Treponema pallidum subsp. pertenue str.
Gauthier]
gi|374680791|gb|AEZ61081.1| peptide deformylase [Treponema pallidum subsp. pallidum DAL-1]
gi|408475976|gb|AFU66741.1| peptide deformylase [Treponema pallidum subsp. pallidum str. Mexico
A]
Length = 162
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 59/107 (55%), Gaps = 5/107 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF VM G+GL+APQVG V++ V + E +NP++ S + YEEGC
Sbjct: 32 MFRVMRGAGGVGLAAPQVGRTVRVFVVDV-----EHHVRAFINPQITAASEEQSSYEEGC 86
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P I+ V RP V + D NG R +V + ARV QHE+DHL
Sbjct: 87 LSIPHIYERVLRPRRVSVQYLDENGKRCAVDADGILARVIQHEYDHL 133
>gi|392552735|ref|ZP_10299872.1| peptide deformylase [Pseudoalteromonas spongiae UST010723-006]
Length = 170
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +GIGL+A QV I+ +++V + V E G E +VL+NP + K I EEGC
Sbjct: 35 MLETMYDENGIGLAATQVDIHQRIVVID-VSEEG-NEPLVLINPEIIKKDGSKIS-EEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG +A V+R E+V I A D NG ++ L A QHE DHL+
Sbjct: 92 LSVPGSYAKVDRAETVTIKAFDENGNQYEKDADGLLAVCIQHELDHLK 139
>gi|94499926|ref|ZP_01306462.1| peptide deformylase [Bermanella marisrubri]
gi|94428127|gb|EAT13101.1| peptide deformylase [Oceanobacter sp. RED65]
Length = 171
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++ Q++V + +R E V +NP+V + +EGC
Sbjct: 35 MFETMYDCPGIGLAATQVNVHEQIIVMDISEDRSEPH--VFINPKVTVLDGEPEKMQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + DVER E KI+A D NG + + L A QHE DHL
Sbjct: 93 LSVPGFYEDVERIEHCKIEALDRNGQPYELEARGLLAVCIQHEMDHL 139
>gi|18310726|ref|NP_562660.1| peptide deformylase [Clostridium perfringens str. 13]
gi|110802372|ref|YP_699030.1| peptide deformylase [Clostridium perfringens SM101]
gi|23396559|sp|Q8XJL2.1|DEF1_CLOPE RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|18145407|dbj|BAB81450.1| polypeptide deformylase [Clostridium perfringens str. 13]
gi|110682873|gb|ABG86243.1| peptide deformylase [Clostridium perfringens SM101]
Length = 147
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 63/108 (58%), Gaps = 4/108 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ +G+GL++PQVGI ++ V + + G V +NP + + S + EEGC
Sbjct: 35 MIETMYENNGVGLASPQVGILKRIFVVDAMDGAGSR---VFINPEILEKSGEQTD-EEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG H V+R +KI A D+NG F + AR QHE+DHL+
Sbjct: 91 LSLPGRHKPVKRANKIKIKALDVNGNEFVLDAEGFLARAIQHEYDHLE 138
>gi|209965583|ref|YP_002298498.1| peptide deformylase [Rhodospirillum centenum SW]
gi|209959049|gb|ACI99685.1| peptide deformylase, Def, putative [Rhodospirillum centenum SW]
Length = 173
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
M + MYK GIGL+APQVG+ +++V + + E I++ NP + S+++ +EG
Sbjct: 35 MLETMYKAPGIGLAAPQVGVLERVIVMDIAERKTEAPTPILMANPEIIARSDELATAQEG 94
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P I+ADV RP V++ D +G + L A QHE DHL
Sbjct: 95 CLSIPDIYADVTRPRQVRVRYVDRDGEVRELDADGLTATCVQHEIDHL 142
>gi|449128726|ref|ZP_21764972.1| peptide deformylase [Treponema denticola SP33]
gi|448941134|gb|EMB22038.1| peptide deformylase [Treponema denticola SP33]
Length = 169
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 69/108 (63%), Gaps = 7/108 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQL-MVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
MF + K +GIGL+APQVG N++L +VF + E ++ V +NP + + S +M EEG
Sbjct: 32 MFVTVKKENGIGLAAPQVGENIRLFIVF--INE----QKYVFINPEIIETSQEMCLMEEG 85
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P ++ +V RP +VK+ +I+G ++ S L ARV QHE DHL
Sbjct: 86 CLSIPKVYDEVMRPSAVKVQFLNIDGKIKTIEASGLLARVIQHENDHL 133
>gi|392390840|ref|YP_006427443.1| peptide deformylase [Ornithobacterium rhinotracheale DSM 15997]
gi|390521918|gb|AFL97649.1| peptide deformylase [Ornithobacterium rhinotracheale DSM 15997]
Length = 190
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 66/118 (55%), Gaps = 11/118 (9%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGERGEGEEI---------VLVNPRVNKY 49
MF+ MY +GIG++APQVG+ ++L V + P E E E I V +N +
Sbjct: 34 MFETMYTANGIGIAAPQVGLPIRLFVIDITPFAEDEEYENIAEELKTFKKVFINAHKIEE 93
Query: 50 SNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
+ + + EGCLS P + DV RPES+ + D N + + SD+ ARV QHE+DH+
Sbjct: 94 TGEPWKFNEGCLSIPNVREDVARPESITLRYLDENFVEHTETFSDIFARVIQHEYDHI 151
>gi|383786925|ref|YP_005471494.1| peptide deformylase [Fervidobacterium pennivorans DSM 9078]
gi|383109772|gb|AFG35375.1| peptide deformylase [Fervidobacterium pennivorans DSM 9078]
Length = 166
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 66/104 (63%), Gaps = 5/104 (4%)
Query: 4 VMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSF 63
MY DG+GL+APQVG++++ + G G +++ VNP + ++S++ EEGCLS
Sbjct: 34 TMYAEDGVGLAAPQVGMSLRFFGMDD----GSGFKMI-VNPEIIEHSDEKELGEEGCLSI 88
Query: 64 PGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
PG+ ADV R + V++ +D +G L PAR+FQHE+DHL
Sbjct: 89 PGVFADVWRYKWVRVRYQDEHGVYHEELLEGYPARIFQHEYDHL 132
>gi|416893349|ref|ZP_11924537.1| peptide deformylase [Aggregatibacter aphrophilus ATCC 33389]
gi|347813903|gb|EGY30555.1| peptide deformylase [Aggregatibacter aphrophilus ATCC 33389]
Length = 170
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 63/107 (58%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+APQV I +++ + G++ ++VL+NP + + K EEGC
Sbjct: 35 MFDTMYQEEGIGLAAPQVDILQRIITIDIEGDKQN--QLVLINPEILESEGKT-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG A V R E V I A D +G F++ L A QHE DHL
Sbjct: 92 LSIPGFRAWVPRKEKVTIRALDRDGKEFTLKADGLLAICIQHEIDHL 138
>gi|336424008|ref|ZP_08604056.1| peptide deformylase [Lachnospiraceae bacterium 3_1_57FAA_CT1]
gi|336018556|gb|EGN48295.1| peptide deformylase [Lachnospiraceae bacterium 3_1_57FAA_CT1]
Length = 157
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 63/107 (58%), Gaps = 5/107 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +G+GL+APQVG+ +++V + GE + IVL+NPR+ + S + E GC
Sbjct: 35 MLETMYDANGVGLAAPQVGVLKRIVVIDVTGE----DPIVLINPRILETSGEQTGGE-GC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG V RP VK+ A D F + ++L AR F HE DHL
Sbjct: 90 LSLPGKSGTVTRPHYVKVKAYDREMKPFEIEGTELLARAFCHEIDHL 136
>gi|85860534|ref|YP_462736.1| peptide deformylase [Syntrophus aciditrophicus SB]
gi|85723625|gb|ABC78568.1| peptide deformylase [Syntrophus aciditrophicus SB]
Length = 189
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 65/110 (59%), Gaps = 6/110 (5%)
Query: 5 MYKTDGIGLSAPQVGINVQLMVFNPVG------ERGEGEEIVLVNPRVNKYSNKMIPYEE 58
+ + D +GL+APQ+GIN ++++F G + E + +L+NPR+ + +++ E
Sbjct: 51 LERDDALGLAAPQIGINRRIVIFRNKGFDEEGWSKKEKDYDLLINPRITQTRGELVKGAE 110
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
GCLS P I +V R VK+ A D +G R S +D ARV QHE DHL+
Sbjct: 111 GCLSCPSIQVEVNRFPEVKVRAFDRHGNRISKRYADFLARVAQHELDHLE 160
>gi|398989735|ref|ZP_10692968.1| peptide deformylase [Pseudomonas sp. GM24]
gi|399012774|ref|ZP_10715092.1| peptide deformylase [Pseudomonas sp. GM16]
gi|398115018|gb|EJM04813.1| peptide deformylase [Pseudomonas sp. GM16]
gi|398146961|gb|EJM35685.1| peptide deformylase [Pseudomonas sp. GM24]
Length = 168
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + +M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRTEPR--VFINPEFESLTEEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ V+I A D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVRIKALDRDGKPYELIAEGLLAVCIQHECDHL 139
>gi|56698051|ref|YP_168422.1| peptide deformylase [Ruegeria pomeroyi DSS-3]
gi|56679788|gb|AAV96454.1| peptide deformylase [Ruegeria pomeroyi DSS-3]
Length = 172
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGE-GEEIVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQ+G+ +L+V + V E +V+ NPRV S++ YEEG
Sbjct: 34 MLETMYDAPGIGLAAPQIGVLDRLIVLDCVKEESAPARPLVMFNPRVVAASDETNIYEEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P +A+V RP+ V ++ D +G S + L A QHE DHL
Sbjct: 94 CLSIPEQYAEVTRPKVVDVEWIDRDGKLQSETFDGLWATCVQHEIDHL 141
>gi|333381472|ref|ZP_08473154.1| polypeptide deformylase [Dysgonomonas gadei ATCC BAA-286]
gi|332830442|gb|EGK03070.1| polypeptide deformylase [Dysgonomonas gadei ATCC BAA-286]
Length = 187
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGERG---EGEEIVLVNPRVNKYSNKMIP 55
MF+ MY DGIGL+APQ+G++++L V + P+ E G + V +NP + + + +++
Sbjct: 34 MFETMYNADGIGLAAPQIGLDIRLFVIDLEPLAEDNPIYSGFKKVFINPVIIEETGEVVK 93
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
EEGCLS PGI+ V+R E ++I D N AR QHE+DH++
Sbjct: 94 MEEGCLSIPGINEGVDRNEKIRIQYLDENFVSHDEVYDAFFARCIQHEYDHIE 146
>gi|328947001|ref|YP_004364338.1| peptide deformylase [Treponema succinifaciens DSM 2489]
gi|328447325|gb|AEB13041.1| Peptide deformylase [Treponema succinifaciens DSM 2489]
Length = 192
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 61/108 (56%), Gaps = 5/108 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ M DG+GL+APQVGI+ + V + V +NP + K S + YEEGC
Sbjct: 34 MFETMISADGVGLAAPQVGISKRFFVVIS----DDNVRRVFINPEIIKTSAENSEYEEGC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSD-LPARVFQHEFDHL 107
LS PG+ + RP + + A D NG RF + D L AR+ QHE DHL
Sbjct: 90 LSLPGVSEKIVRPVKISVSAIDENGKRFVLDDVDGLLARIIQHENDHL 137
>gi|86137254|ref|ZP_01055832.1| peptide deformylase [Roseobacter sp. MED193]
gi|85826578|gb|EAQ46775.1| peptide deformylase [Roseobacter sp. MED193]
Length = 172
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERG-EGEEIVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQ+G+ +L+V + E G E + +V+ NP + S + YEEG
Sbjct: 34 MLETMYAAPGIGLAAPQIGVMERLIVLDCEKEEGVEPKPLVMFNPEIISSSEETNVYEEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P +A+V RP V++ D NG + + L A QHE DHL
Sbjct: 94 CLSIPDQYAEVTRPRDVEVQWLDRNGNQQRETFDGLWATCVQHEIDHL 141
>gi|42527153|ref|NP_972251.1| polypeptide deformylase [Treponema denticola ATCC 35405]
gi|422342128|ref|ZP_16423068.1| polypeptide deformylase [Treponema denticola F0402]
gi|449102526|ref|ZP_21739274.1| peptide deformylase [Treponema denticola AL-2]
gi|449107492|ref|ZP_21744146.1| peptide deformylase [Treponema denticola ASLM]
gi|449111787|ref|ZP_21748356.1| peptide deformylase [Treponema denticola ATCC 33521]
gi|449113406|ref|ZP_21749911.1| peptide deformylase [Treponema denticola ATCC 35404]
gi|449115975|ref|ZP_21752435.1| peptide deformylase [Treponema denticola H-22]
gi|449123711|ref|ZP_21760033.1| peptide deformylase [Treponema denticola OTK]
gi|449131381|ref|ZP_21767597.1| peptide deformylase [Treponema denticola SP37]
gi|451969184|ref|ZP_21922413.1| peptide deformylase [Treponema denticola US-Trep]
gi|41817577|gb|AAS12162.1| polypeptide deformylase [Treponema denticola ATCC 35405]
gi|325474196|gb|EGC77384.1| polypeptide deformylase [Treponema denticola F0402]
gi|448940214|gb|EMB21125.1| peptide deformylase [Treponema denticola SP37]
gi|448943964|gb|EMB24846.1| peptide deformylase [Treponema denticola OTK]
gi|448955461|gb|EMB36228.1| peptide deformylase [Treponema denticola H-22]
gi|448957058|gb|EMB37811.1| peptide deformylase [Treponema denticola ATCC 33521]
gi|448959616|gb|EMB40335.1| peptide deformylase [Treponema denticola ATCC 35404]
gi|448961692|gb|EMB42387.1| peptide deformylase [Treponema denticola ASLM]
gi|448966115|gb|EMB46773.1| peptide deformylase [Treponema denticola AL-2]
gi|451702052|gb|EMD56486.1| peptide deformylase [Treponema denticola US-Trep]
Length = 169
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 69/108 (63%), Gaps = 7/108 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQL-MVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
MF + K +GIGL+APQVG N++L +VF + E ++ V +NP + + S +M EEG
Sbjct: 32 MFVTVKKENGIGLAAPQVGENIRLFIVF--INE----QKYVFINPEIIETSQEMCLMEEG 85
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P ++ +V RP +VK+ +I+G ++ S L ARV QHE DHL
Sbjct: 86 CLSIPKVYDEVMRPSAVKVQFLNIDGKIKTIEASGLLARVIQHENDHL 133
>gi|392402943|ref|YP_006439555.1| peptide deformylase [Turneriella parva DSM 21527]
gi|390610897|gb|AFM12049.1| peptide deformylase [Turneriella parva DSM 21527]
Length = 184
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 73/115 (63%), Gaps = 8/115 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERG--EGEEIVLVNPRVNKYSNKMIPYEE 58
MFD M G+GL+A Q+GI +++V + V E+G +G +NPRV + S++M EE
Sbjct: 35 MFDSMASEGGVGLAAVQIGILKRVLVIDLV-EKGFIKG---AFINPRVIEASDEMQDGEE 90
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
GCLS PG+ A+++RP VKI +D++G +V L AR F HE DHL +VFV
Sbjct: 91 GCLSVPGLSAELKRPRWVKIGYQDLSGNEKTVEGEMLLARAFLHEMDHLDGKVFV 145
>gi|302335855|ref|YP_003801062.1| peptide deformylase [Olsenella uli DSM 7084]
gi|301319695|gb|ADK68182.1| peptide deformylase [Olsenella uli DSM 7084]
Length = 180
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 65/110 (59%), Gaps = 3/110 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY T+G+GL+APQVG VQL+V + G+ VL+NPRV + EGC
Sbjct: 36 MLEDMYATEGVGLAAPQVGELVQLVVIDVDYADGKRSPYVLINPRVVVADGDEVVGSEGC 95
Query: 61 LSFPGIHADVERPESVKIDARDING--ARFSVSLSDLPARVFQHEFDHLQ 108
LSFPGI V RP V ++A D++G R+ + ++L A QHE DHL
Sbjct: 96 LSFPGITVQVSRPSHVVVEALDLDGDLMRYE-ARNNLLAVCLQHEIDHLH 144
>gi|358465683|ref|ZP_09175588.1| peptide deformylase [Fusobacterium sp. oral taxon 370 str. F0437]
gi|357069814|gb|EHI79687.1| peptide deformylase [Fusobacterium sp. oral taxon 370 str. F0437]
Length = 174
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 63/107 (58%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+TDGIGL+APQVG++ ++ V + G G ++NP + + + +EEGC
Sbjct: 36 MVETMYETDGIGLAAPQVGVSKRVFVCDD----GNGHIRKVINPIIEPLTEETQEFEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PGI+ VERP+ V + + NG DL A V QHE DHL
Sbjct: 92 LSVPGIYKKVERPKKVMLKYLNENGEAVEEIAEDLLAVVVQHENDHL 138
>gi|373114090|ref|ZP_09528307.1| peptide deformylase [Fusobacterium necrophorum subsp. funduliforme
1_1_36S]
gi|371652977|gb|EHO18383.1| peptide deformylase [Fusobacterium necrophorum subsp. funduliforme
1_1_36S]
Length = 136
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
Query: 5 MYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFP 64
MY DG+GL+APQVGI++++ V + +G E ++NP + + + I EEGCLS P
Sbjct: 1 MYARDGVGLAAPQVGISLRMFVCD-IGSPEESNVKKIINPLITPLTEETISVEEGCLSIP 59
Query: 65 GIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
GI+ VER +K++ ++ G L PA V QHE+DHL+
Sbjct: 60 GIYKKVERIAKLKLEYQNEQGEFVEEILEGFPAIVVQHEYDHLE 103
>gi|389795255|ref|ZP_10198385.1| peptide deformylase [Rhodanobacter fulvus Jip2]
gi|388431032|gb|EIL88136.1| peptide deformylase [Rhodanobacter fulvus Jip2]
Length = 169
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY +G+GL+A QV ++ +++V + G E + L+N ++ + + Y+EGC
Sbjct: 35 MFETMYAANGVGLAATQVNVHQRVLVTDM--SEGRTEPLALINAQILEKEGSQV-YQEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LSFPG++ADV R VK+ A+D G F V A QHE DHL +VFV
Sbjct: 92 LSFPGLYADVTRALKVKVKAQDAAGNEFVVDAEGPLAVCIQHEIDHLDGKVFV 144
>gi|329913547|ref|ZP_08275972.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480]
gi|327545311|gb|EGF30553.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480]
Length = 177
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 66/113 (58%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL++ QV ++ QL++ + + E VL+NP + S +M Y+EGC
Sbjct: 35 MAETMYDAPGVGLASSQVDVHEQLIIVDISDNQSELR--VLINPEITWASTEMQLYDEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LS PG++ VER +K+ A D++G F + L A QHE DHL +VFV
Sbjct: 93 LSVPGVYDGVERHARIKVRALDVDGKEFDTTADGLLAVCIQHEMDHLKGKVFV 145
>gi|228992595|ref|ZP_04152522.1| Peptide deformylase [Bacillus pseudomycoides DSM 12442]
gi|228998643|ref|ZP_04158230.1| Peptide deformylase [Bacillus mycoides Rock3-17]
gi|229006144|ref|ZP_04163831.1| Peptide deformylase [Bacillus mycoides Rock1-4]
gi|228755097|gb|EEM04455.1| Peptide deformylase [Bacillus mycoides Rock1-4]
gi|228761111|gb|EEM10070.1| Peptide deformylase [Bacillus mycoides Rock3-17]
gi|228767229|gb|EEM15865.1| Peptide deformylase [Bacillus pseudomycoides DSM 12442]
Length = 158
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 67/109 (61%), Gaps = 6/109 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRV-NKYSNKMIPYEEG 59
M + M DG+GL+APQVG+++Q+ V + + G+ I L+NP + K ++ P EG
Sbjct: 35 MHETMLVADGVGLAAPQVGVSLQVAVVDIGDDTGK---IELINPVILEKRGEQVGP--EG 89
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
CLSFPG++ +VER E +K+ A++ G F + D AR QHE DHL
Sbjct: 90 CLSFPGLYGEVERAEYIKVRAQNRRGKIFLLEADDFLARAIQHEIDHLH 138
>gi|402490565|ref|ZP_10837354.1| peptide deformylase [Rhizobium sp. CCGE 510]
gi|401810591|gb|EJT02964.1| peptide deformylase [Rhizobium sp. CCGE 510]
Length = 171
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 60/107 (56%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E + V +NP + S++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAVQIGVPRRMLVIDIAREGEERQPQVFINPEIVTSSDERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP V + D NG +V L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPAIVSVKYLDRNGKEQTVEADGLLATCLQHEIDHL 141
>gi|359435205|ref|ZP_09225428.1| peptide deformylase [Pseudoalteromonas sp. BSi20652]
gi|359442175|ref|ZP_09232049.1| peptide deformylase [Pseudoalteromonas sp. BSi20429]
gi|392535953|ref|ZP_10283090.1| peptide deformylase [Pseudoalteromonas arctica A 37-1-2]
gi|357918106|dbj|GAA61677.1| peptide deformylase [Pseudoalteromonas sp. BSi20652]
gi|358035958|dbj|GAA68298.1| peptide deformylase [Pseudoalteromonas sp. BSi20429]
Length = 167
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +GIGL+A QV I+ +++V + ER E +VL+NP++ K + EEGC
Sbjct: 35 MLETMYDENGIGLAATQVDIHQRIVVIDVSEERDEP--LVLINPQIIKKDGSTVS-EEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS P +A V+R E+V + A + NG F + +L A QHE DHLQ
Sbjct: 92 LSVPNSYAKVDRAETVTVAALNENGEEFVLDADELLAICIQHELDHLQ 139
>gi|284006131|emb|CBA71372.1| polypeptide deformylase [Arsenophonus nasoniae]
Length = 171
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 64/107 (59%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ +GIGL+A QV I+ +++V + R E +VL+NP + + S + EEGC
Sbjct: 35 MFETMYEEEGIGLAATQVNIHQRIIVIDVSESRNE--RLVLINPVILETSGET-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P A V R + VKI A D+NG F + DL A QHE DHL
Sbjct: 92 LSVPEQRAFVPRAKWVKIKALDVNGKEFELETDDLLAICIQHEIDHL 138
>gi|212703762|ref|ZP_03311890.1| hypothetical protein DESPIG_01810 [Desulfovibrio piger ATCC 29098]
gi|212672730|gb|EEB33213.1| peptide deformylase [Desulfovibrio piger ATCC 29098]
Length = 170
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ G+GL+APQVG N++++V +P + E + V++NP + ++ +EGC
Sbjct: 34 MLETMYEAPGVGLAAPQVGRNIRMLVMDPAAQDEEKQPRVVINPELTLSEETVLSRQEGC 93
Query: 61 LSFP-GIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P ADV+R E V + D++G L A V QHE DHL
Sbjct: 94 LSVPLNYRADVQRAERVHLRYMDLDGKIVEEDLEGFAAIVIQHEADHL 141
>gi|430804750|ref|ZP_19431865.1| peptide deformylase [Cupriavidus sp. HMR-1]
gi|429503070|gb|ELA01372.1| peptide deformylase [Cupriavidus sp. HMR-1]
Length = 168
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 65/113 (57%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ GIGL+A QV ++ +++V + R E +V +NP V S +EEGC
Sbjct: 35 MAETMYEAPGIGLAATQVDVHERVIVIDISESRDEL--MVFINPEVTWASENRKVWEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LS P ++ VERP+ VK+ A D G F + DL A QHE DHL +VFV
Sbjct: 93 LSVPEVYDRVERPDRVKVRALDEKGETFELDADDLLAVCIQHEIDHLDGKVFV 145
>gi|410088705|ref|ZP_11285394.1| Peptide deformylase [Morganella morganii SC01]
gi|421494911|ref|ZP_15942248.1| DEF [Morganella morganii subsp. morganii KT]
gi|455737430|ref|YP_007503696.1| Peptide deformylase [Morganella morganii subsp. morganii KT]
gi|400190800|gb|EJO23959.1| DEF [Morganella morganii subsp. morganii KT]
gi|409764840|gb|EKN48968.1| Peptide deformylase [Morganella morganii SC01]
gi|455418993|gb|AGG29323.1| Peptide deformylase [Morganella morganii subsp. morganii KT]
Length = 169
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 64/108 (59%), Gaps = 3/108 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY +GIGL+A QV I+ +++V + ER E +VL+NP + + S + EEGC
Sbjct: 35 MFETMYDEEGIGLAATQVDIHQRIIVIDVSEERNE--RLVLINPELLEKSGEA-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS P A V R E VKI A D NG F + DL A QHE DHL+
Sbjct: 92 LSIPEQRAFVPRAEHVKIRALDYNGEPFELETGDLLAICIQHEMDHLE 139
>gi|449109286|ref|ZP_21745922.1| peptide deformylase [Treponema denticola ATCC 33520]
gi|449119971|ref|ZP_21756358.1| peptide deformylase [Treponema denticola H1-T]
gi|449122368|ref|ZP_21758708.1| peptide deformylase [Treponema denticola MYR-T]
gi|448948124|gb|EMB28962.1| peptide deformylase [Treponema denticola MYR-T]
gi|448948591|gb|EMB29425.1| peptide deformylase [Treponema denticola H1-T]
gi|448959094|gb|EMB39816.1| peptide deformylase [Treponema denticola ATCC 33520]
Length = 169
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 66/107 (61%), Gaps = 5/107 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF + K +GIGL+APQVG N++L + + ++ V +NP + + S +M EEGC
Sbjct: 32 MFVTVKKENGIGLAAPQVGENIRLFIVFI-----DEQKYVFINPEIIETSQEMCLMEEGC 86
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P ++ +V RP +VK+ +I+G ++ S L ARV QHE DHL
Sbjct: 87 LSIPKVYDEVMRPSAVKVQFLNIDGKIKTIEASGLLARVIQHENDHL 133
>gi|332299918|ref|YP_004441839.1| Peptide deformylase [Porphyromonas asaccharolytica DSM 20707]
gi|332176981|gb|AEE12671.1| Peptide deformylase [Porphyromonas asaccharolytica DSM 20707]
Length = 188
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 66/112 (58%), Gaps = 5/112 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGER---GEGEEIVLVNPRVNKYSNKMIP 55
M+ MY++DG+GL+APQ+G N++L V + P+ E ++V++N + S +
Sbjct: 36 MWQTMYESDGVGLAAPQIGRNIRLQVIDATPLAEEYPECAQLKLVMINAHMQSLSEETCS 95
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
EGCLS PGI+ V RPES+ +D + + LS ARV QHE+DHL
Sbjct: 96 EPEGCLSLPGINERVVRPESIVVDYMNEQFEPQHLELSGFAARVVQHEYDHL 147
>gi|229495940|ref|ZP_04389664.1| peptide deformylase [Porphyromonas endodontalis ATCC 35406]
gi|229317032|gb|EEN82941.1| peptide deformylase [Porphyromonas endodontalis ATCC 35406]
Length = 190
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 72/113 (63%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGE---RGEGEEIVLVNPRVNKYSNKMIP 55
M+ MY++DGIGL+APQ+G +++L+V + P+ E + + V++N R+ + S + +
Sbjct: 33 MWKSMYESDGIGLAAPQIGKSIRLLVIDASPMAEYFPECKDFKTVMINARITELSEETLS 92
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
EEGCLS PGIH VERP+ + I+ D + L+ ARV QHE+DHL+
Sbjct: 93 EEEGCLSLPGIHERVERPKEITIEYLDEQFTPQTRHLTGFAARVVQHEYDHLE 145
>gi|399048083|ref|ZP_10739813.1| peptide deformylase [Brevibacillus sp. CF112]
gi|433544432|ref|ZP_20500816.1| peptide deformylase [Brevibacillus agri BAB-2500]
gi|398053997|gb|EJL46143.1| peptide deformylase [Brevibacillus sp. CF112]
gi|432184287|gb|ELK41804.1| peptide deformylase [Brevibacillus agri BAB-2500]
Length = 158
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 63/107 (58%), Gaps = 5/107 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY +G+GL+APQVGI+ +++V + G+G I +VNP + + + Y EGC
Sbjct: 35 MADTMYDAEGVGLAAPQVGISKRVIVMDC----GDGL-IEIVNPEIVDHKGEQFDYPEGC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG+ DV R + +K+ +D G + DL +R QHE DHL
Sbjct: 90 LSIPGLRGDVRRHQWIKLRGQDRFGNEIELEAEDLLSRCAQHEIDHL 136
>gi|146276205|ref|YP_001166364.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025]
gi|145554446|gb|ABP69059.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025]
Length = 177
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 61/109 (55%), Gaps = 3/109 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE--IVLVNPRVNKYSNKMIPYEE 58
M MY GIGL+APQVG+ +L+V + ++ E I ++NP+V S + YEE
Sbjct: 34 MLATMYDAPGIGLAAPQVGVMRRLVVMD-CNKQPEAPRRPIAMINPQVVWASEDLSTYEE 92
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
GCLS P + A+VERP VK+ I+G S L A QHE DHL
Sbjct: 93 GCLSLPNVFAEVERPAEVKVRWTGIDGREEEEQFSGLWATCVQHEIDHL 141
>gi|417844300|ref|ZP_12490345.1| Peptide deformylase [Haemophilus haemolyticus M21639]
gi|341956931|gb|EGT83346.1| Peptide deformylase [Haemophilus haemolyticus M21639]
Length = 169
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 62/107 (57%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ GIGL+APQV I +++ + G++ +IVL+NP + S EEGC
Sbjct: 35 MFDTMYQEKGIGLAAPQVDILQRIITIDVEGDKQN--QIVLINPEI-LVSEGETGIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG A V R E VK+ A D +G F++ L A QHE DHL
Sbjct: 92 LSIPGFRALVPRKEKVKVRALDRDGKEFTLDADGLLAICIQHEIDHL 138
>gi|302392197|ref|YP_003828017.1| peptide deformylase [Acetohalobium arabaticum DSM 5501]
gi|302204274|gb|ADL12952.1| peptide deformylase [Acetohalobium arabaticum DSM 5501]
Length = 145
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 6/108 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY G+GL+APQ+GI+ +++V + GEG + L+NP + + S I EEGC
Sbjct: 35 MQDTMYDASGVGLAAPQIGISKRVIVVDV----GEGP-LALINPEIVESSGSEID-EEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS P + +VER V +DA D +G + L ARV QHE DHL+
Sbjct: 89 LSIPNENGNVERAARVVVDALDSDGREVEIEAEGLLARVLQHEIDHLE 136
>gi|163756828|ref|ZP_02163937.1| peptide deformylase [Kordia algicida OT-1]
gi|161323217|gb|EDP94557.1| peptide deformylase [Kordia algicida OT-1]
Length = 196
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 68/120 (56%), Gaps = 12/120 (10%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVG------------ERGEGEEIVLVNPRVNK 48
MF+ MY G+GL+APQVG+ ++L + + G ++ EG + V +N ++ +
Sbjct: 34 MFETMYNAYGVGLAAPQVGLPIRLFMIDATGFAEDEELDEEQRKQLEGMKKVFINAKIIE 93
Query: 49 YSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
+ + + EGCLS P I DV RPES+KI+ D N + L ARV QHE+DH++
Sbjct: 94 RNGEPWVFNEGCLSIPDIREDVFRPESIKIEYMDENFEKHVEEYDGLAARVIQHEYDHIE 153
>gi|302387077|ref|YP_003822899.1| peptide deformylase [Clostridium saccharolyticum WM1]
gi|302197705|gb|ADL05276.1| peptide deformylase [Clostridium saccharolyticum WM1]
Length = 163
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 66/107 (61%), Gaps = 6/107 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY+ +G+GL+APQVG+ +L+V + G G I L+NP + + S + E GC
Sbjct: 37 MADTMYQEEGVGLAAPQVGVLKRLVVIDI----GAGL-IKLINPEIMEQSGQQQGME-GC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PGI +V RP+ V+I A++ GA F + +DL AR HE DHL
Sbjct: 91 LSVPGISGEVVRPQKVRIKAQNETGAYFELEGTDLLARAICHEIDHL 137
>gi|422348841|ref|ZP_16429733.1| peptide deformylase [Sutterella wadsworthensis 2_1_59BFAA]
gi|404658893|gb|EKB31755.1| peptide deformylase [Sutterella wadsworthensis 2_1_59BFAA]
Length = 170
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+A QVG +++V + E+ +VLVNP + ++ ++ +EEGC
Sbjct: 35 MAETMYAAPGVGLAANQVGSLKRIVVIDITDEKNNL--LVLVNPYIKSHTEELAEFEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS G++ V RP+ V + A+D++G F + + L A QHE DHL
Sbjct: 93 LSLKGLYEKVSRPDGVTVCAQDLDGKPFEIEATGLLAVCLQHELDHL 139
>gi|421588144|ref|ZP_16033464.1| peptide deformylase [Rhizobium sp. Pop5]
gi|403707226|gb|EJZ22278.1| peptide deformylase [Rhizobium sp. Pop5]
Length = 171
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 60/107 (56%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E + V +NP + S++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRMLVIDVSREGEEKQPQVFINPEIVTSSDERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP V + D NG +V L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPAVVSVKYLDRNGKEQTVEADGLLATCLQHEIDHL 141
>gi|33242441|ref|NP_877382.1| peptide deformylase [Chlamydophila pneumoniae TW-183]
gi|33236952|gb|AAP99039.1| polypeptide deformylase [Chlamydophila pneumoniae TW-183]
Length = 204
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 62/113 (54%), Gaps = 6/113 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M D M G+GL+APQVG NV L V E +GE I V +NP ++ S I
Sbjct: 52 MCDTMEAHRGVGLAAPQVGKNVSLFVMCVDRETEDGELIFSESPRVFINPVLSDPSETPI 111
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
+EGCLS PG+ +V RP+ + + A D+NG F+ L AR+ HE DHL
Sbjct: 112 IGKEGCLSIPGLRGEVFRPQKITVTAMDLNGKIFTEHLEGFTARIIMHETDHL 164
>gi|229514651|ref|ZP_04404112.1| peptide deformylase [Vibrio cholerae TMA 21]
gi|229348631|gb|EEO13589.1| peptide deformylase [Vibrio cholerae TMA 21]
Length = 168
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 65/108 (60%), Gaps = 4/108 (3%)
Query: 1 MFDVMYKTD-GIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
+ D +Y TD GIGL+APQVG ++V + R + +VL+NP+V SNK + +EG
Sbjct: 34 LLDTLYATDNGIGLAAPQVGREEAIVVIDLSDNRDQ--PLVLINPKVVSGSNKEMG-QEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P +ADVER SV ++A D G + SD A V QHE DHL
Sbjct: 91 CLSVPDYYADVERYTSVVVEALDREGKPLCIETSDFLAIVMQHEIDHL 138
>gi|94312496|ref|YP_585706.1| peptide deformylase [Cupriavidus metallidurans CH34]
gi|93356348|gb|ABF10437.1| formylmethionine deformylase [Cupriavidus metallidurans CH34]
Length = 168
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 65/113 (57%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ GIGL+A QV ++ +++V + R E +V +NP V S +EEGC
Sbjct: 35 MAETMYEAPGIGLAATQVDVHERVIVIDISESRDEL--MVFINPEVTWASENRKVWEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LS P ++ VERP+ VK+ A D G F + DL A QHE DHL +VFV
Sbjct: 93 LSVPEVYDRVERPDRVKVRALDEKGEAFELDADDLLAVCIQHEIDHLDGKVFV 145
>gi|414168993|ref|ZP_11424830.1| peptide deformylase [Afipia clevelandensis ATCC 49720]
gi|410885752|gb|EKS33565.1| peptide deformylase [Afipia clevelandensis ATCC 49720]
Length = 172
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 59/107 (55%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY GIGL+A QV + ++L+ + + GE E V +NP + S+++ YEEGC
Sbjct: 36 MFQTMYDAPGIGLAAIQVAVPLRLITMDLSKKEGEKEPRVFINPEILASSDELSVYEEGC 95
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + +VERP V++ D+ G L A QHE DHL
Sbjct: 96 LSIPEYYEEVERPARVRVRFMDLEGVTREEDAEGLYATCIQHEIDHL 142
>gi|291542591|emb|CBL15701.1| peptide deformylase [Ruminococcus bromii L2-63]
Length = 158
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 66/108 (61%), Gaps = 6/108 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + ++K +G+GL+APQVGI +++V + GEG I LVNP++ YS K E GC
Sbjct: 35 MIETLHKAEGVGLAAPQVGILRRVVVIDV----GEGP-IELVNPKIIAYSGKQETLE-GC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG RP+ VK+ A+D +G F + DL A+ F HE DHL+
Sbjct: 89 LSIPGKWGYTVRPDYVKVKAQDRHGDEFVIDGKDLLAKAFCHELDHLE 136
>gi|293393278|ref|ZP_06637592.1| peptide deformylase [Serratia odorifera DSM 4582]
gi|291424188|gb|EFE97403.1| peptide deformylase [Serratia odorifera DSM 4582]
Length = 169
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 63/107 (58%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY +GIGL+A QV I+ +++V + R + +VL+NP + + S + EEGC
Sbjct: 35 MFDTMYAEEGIGLAATQVDIHQRIIVIDVSETRDQ--RLVLINPELLEQSGET-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P A V R E VKI A D NG F ++ DL A QHE DHL
Sbjct: 92 LSIPEQRALVPRAEKVKIRALDYNGNSFELAADDLLAICIQHEMDHL 138
>gi|146329347|ref|YP_001209086.1| formylmethionine deformylase [Dichelobacter nodosus VCS1703A]
gi|158513298|sp|A5EWL8.1|DEF_DICNV RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|146232817|gb|ABQ13795.1| formylmethionine deformylase [Dichelobacter nodosus VCS1703A]
Length = 181
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 66/116 (56%), Gaps = 9/116 (7%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN------PVGERGE---GEEIVLVNPRVNKYSN 51
M++ MY GIGL+APQV I +L+V + GE+ E +++VLVNP + + S
Sbjct: 35 MYETMYHFHGIGLAAPQVNIQQRLIVMDVPQRSAEEGEKAEQIPSDKLVLVNPEIVQRSE 94
Query: 52 KMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
+ YEEGCLS P +A V RP ++ + +DI GA + L + QHE DHL
Sbjct: 95 ECQDYEEGCLSLPNQYALVTRPANITVRYQDITGATQERAAQGLLSVCIQHEIDHL 150
>gi|430375895|ref|ZP_19430298.1| peptide deformylase [Moraxella macacae 0408225]
gi|429541126|gb|ELA09154.1| peptide deformylase [Moraxella macacae 0408225]
Length = 176
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY G+GL+A Q+ ++QL+V + + E G + V +NP V + YEEGC
Sbjct: 35 MFQTMYAAKGVGLAATQIDEHIQLIVMD-LSEEGNQPQ-VFINPVVTPLVEEQFTYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + V+RP+ VKI+A+D G F + L A QHE DHL
Sbjct: 93 LSVPDYYDKVDRPKKVKINAKDREGNDFELEAEGLLAVCIQHEIDHL 139
>gi|334702671|ref|ZP_08518537.1| peptide deformylase [Aeromonas caviae Ae398]
Length = 170
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 66/107 (61%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY +GIGL+A QV I+ +++V + V E E E++VL+NP + + S EEGC
Sbjct: 35 MFETMYAEEGIGLAATQVDIHQRIIVID-VSENRE-EQLVLINPEILEQSGST-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG A V R E VK+ A+D +G F + DL A QHE DHL
Sbjct: 92 LSVPGNRALVPRAEWVKVRAQDRHGNTFELEADDLLAICIQHEMDHL 138
>gi|343518386|ref|ZP_08755378.1| peptide deformylase [Haemophilus pittmaniae HK 85]
gi|343393674|gb|EGV06227.1| peptide deformylase [Haemophilus pittmaniae HK 85]
Length = 158
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 63/107 (58%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+APQV I +++ + G++ ++VL+NP + S EEGC
Sbjct: 35 MFDTMYQEEGIGLAAPQVDILQRIITIDVEGDKQN--QLVLINPEI-LASEGETGIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG A V R E V + A D NG F+++ L A QHE DHL
Sbjct: 92 LSIPGFRALVPRKEKVTVKALDRNGQEFTLNADGLLAICIQHEIDHL 138
>gi|405983282|ref|ZP_11041592.1| peptide deformylase [Slackia piriformis YIT 12062]
gi|404389290|gb|EJZ84367.1| peptide deformylase [Slackia piriformis YIT 12062]
Length = 179
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 60/107 (56%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MYK +G GL+APQVG+ +++V + E GE IV++NP + + + + EEGC
Sbjct: 37 MAKTMYKNNGCGLAAPQVGVLKRIIVVDCDQEDGEQNPIVMLNPVLLETRGREVVDEEGC 96
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PGI + R E + D+NG + + L R QHE DHL
Sbjct: 97 LSCPGISVPIRRKEYAVVRYTDLNGEEWVIEGDGLLGRCLQHEIDHL 143
>gi|339009260|ref|ZP_08641832.1| peptide deformylase [Brevibacillus laterosporus LMG 15441]
gi|338773738|gb|EGP33269.1| peptide deformylase [Brevibacillus laterosporus LMG 15441]
Length = 159
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 64/108 (59%), Gaps = 6/108 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIP-YEEG 59
M D MY +G+G++APQVGI+ ++ V + E +NP + ++S + Y EG
Sbjct: 35 MKDTMYAANGVGIAAPQVGISKRVFVMDCGDFYVEA-----INPEIIEFSGEQFDNYPEG 89
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS PG+H DV R VK+ A+D +G + + + DL AR QHE DHL
Sbjct: 90 CLSIPGLHGDVRRHMVVKMRAQDRDGNLYELEVDDLEARCIQHELDHL 137
>gi|414165106|ref|ZP_11421353.1| peptide deformylase [Afipia felis ATCC 53690]
gi|410882886|gb|EKS30726.1| peptide deformylase [Afipia felis ATCC 53690]
Length = 189
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 60/107 (56%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV + ++L+ + + GE E V +NP + S+ + YEEGC
Sbjct: 53 MFETMYDAPGIGLAAIQVAVPLRLITMDLAKKEGETEPRVFINPEILSKSDDLSVYEEGC 112
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + +VER SV++ D++G L A QHE DHL
Sbjct: 113 LSIPEYYEEVERAASVRVRFMDLDGKVHEEDAEGLYATCIQHEIDHL 159
>gi|308047745|ref|YP_003911311.1| peptide deformylase [Ferrimonas balearica DSM 9799]
gi|307629935|gb|ADN74237.1| peptide deformylase [Ferrimonas balearica DSM 9799]
Length = 171
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 65/107 (60%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ GIGL+A Q+ +VQ++V + +R E + V +NP++ + EEGC
Sbjct: 35 MFDTMYEERGIGLAATQINEHVQVIVMDHSEDRSEPK--VFINPKIIEEKGHFT-NEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++A VER E V +A+D G F+V +L + QHE DHL
Sbjct: 92 LSVPGVYAKVERAEHVVFEAQDREGNPFTVEADELLSICIQHEMDHL 138
>gi|330500987|ref|YP_004377856.1| peptide deformylase [Pseudomonas mendocina NK-01]
gi|328915273|gb|AEB56104.1| peptide deformylase [Pseudomonas mendocina NK-01]
Length = 168
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++ +++V + ++ E V +NP +++M Y+EGC
Sbjct: 35 MFETMYDAPGIGLAATQVNVHKRVVVMDLSEDKSEPR--VFINPEFESLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ VKI A D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVKIKALDRDGQPYELIAEGLLAVCIQHECDHL 139
>gi|325534093|pdb|3QU1|A Chain A, Peptide Deformylase From Vibrio Cholerae
gi|325534094|pdb|3QU1|B Chain B, Peptide Deformylase From Vibrio Cholerae
Length = 171
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 65/108 (60%), Gaps = 4/108 (3%)
Query: 1 MFDVMYKTD-GIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
+ D +Y TD GIGL+APQVG ++V + R + +VL+NP+V SNK + +EG
Sbjct: 37 LLDTLYATDNGIGLAAPQVGREEAIVVIDLSDNRDQ--PLVLINPKVVSGSNKEMG-QEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P +ADVER SV ++A D G + SD A V QHE DHL
Sbjct: 94 CLSVPDYYADVERYTSVVVEALDREGKPLRIETSDFLAIVMQHEIDHL 141
>gi|226942060|ref|YP_002797134.1| Def [Laribacter hongkongensis HLHK9]
gi|226716987|gb|ACO76125.1| Def [Laribacter hongkongensis HLHK9]
Length = 167
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 70/113 (61%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+ + +L+V + + E +G +VL+NP + + + + + YEEGC
Sbjct: 35 MAETMYAAHGIGLAATQIDYHRRLVVID-LSEEHDGL-LVLINPVITRKAGETV-YEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LS PGI+ V R E+V ++A D NG FS+ L A QHE DHL +VFV
Sbjct: 92 LSVPGIYDKVTRAETVTVEALDRNGQPFSLDAEGLLAICIQHEIDHLDGKVFV 144
>gi|407644845|ref|YP_006808604.1| peptide deformylase [Nocardia brasiliensis ATCC 700358]
gi|407307729|gb|AFU01630.1| peptide deformylase [Nocardia brasiliensis ATCC 700358]
Length = 208
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 11/117 (9%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE----------RGEGEEIVLVNPRVNKYS 50
M M+ T G+GL+APQ+GI +Q+ V E R + ++NP
Sbjct: 52 MLATMHATRGVGLAAPQIGIPLQIAVIGDTAEVPAEIATARKRIPVPDFTIINPSYTAAG 111
Query: 51 NKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
+ + + EGCLS PG A V RPE+V+ + D++G R ++ PAR+FQHE DHL
Sbjct: 112 DP-VSFYEGCLSMPGYQAVVPRPETVQAEYDDLDGVRHVERITGWPARIFQHETDHL 167
>gi|417839631|ref|ZP_12485804.1| Peptide deformylase [Haemophilus haemolyticus M19107]
gi|341951997|gb|EGT78540.1| Peptide deformylase [Haemophilus haemolyticus M19107]
Length = 169
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 63/107 (58%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+APQV I +++ + G++ ++VL+NP + S EEGC
Sbjct: 35 MFDTMYQEEGIGLAAPQVDILQRIITIDVEGDKKN--QLVLINPEI-LASEGETGIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG A V R E VK+ A D +G F++ L A QHE DHL
Sbjct: 92 LSIPGFRALVPRKEKVKVRALDRDGKEFTLDADGLLAICIQHEIDHL 138
>gi|153802627|ref|ZP_01957213.1| polypeptide deformylase [Vibrio cholerae MZO-3]
gi|429886437|ref|ZP_19367996.1| Peptide deformylase [Vibrio cholerae PS15]
gi|124121843|gb|EAY40586.1| polypeptide deformylase [Vibrio cholerae MZO-3]
gi|429226766|gb|EKY32846.1| Peptide deformylase [Vibrio cholerae PS15]
Length = 168
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 65/108 (60%), Gaps = 4/108 (3%)
Query: 1 MFDVMYKTD-GIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
+ D +Y TD GIGL+APQVG ++V + R + +VL+NP+V SNK + +EG
Sbjct: 34 LLDTLYATDNGIGLAAPQVGREEAIVVIDLSDNRDQ--PLVLINPKVVSGSNKEMG-QEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P +ADVER SV ++A D G + SD A V QHE DHL
Sbjct: 91 CLSVPDYYADVERYTSVVVEALDREGKPLRIETSDFLAIVMQHEIDHL 138
>gi|408479915|ref|ZP_11186134.1| peptide deformylase [Pseudomonas sp. R81]
Length = 168
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++++++V + +R E + V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHLRVVVMDLSEDRSEPK--VYINPEFEPLTDEMGEYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + +VERP VKI A D +G F + L A QHE DHL
Sbjct: 93 LSVPEFYENVERPLRVKIKALDRDGKPFELIAEGLLAVCIQHECDHL 139
>gi|395493026|ref|ZP_10424605.1| N-formylmethionyl-tRNA deformylase [Sphingomonas sp. PAMC 26617]
gi|404253351|ref|ZP_10957319.1| N-formylmethionyl-tRNA deformylase [Sphingomonas sp. PAMC 26621]
Length = 176
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 59/114 (51%), Gaps = 7/114 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-------IVLVNPRVNKYSNKM 53
MFD MY GIGL+A QV I +++V + GEGE+ +V +NP + S +
Sbjct: 35 MFDTMYDARGIGLAATQVAIEQRIVVIDLQETEGEGEDAKPVKNPLVFINPELLSVSEET 94
Query: 54 IPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
Y EGCLS P +ADVERP + D G R + L A QHE DHL
Sbjct: 95 SFYAEGCLSIPEQYADVERPARCRAAWLDEQGTRQEGDMDGLLATALQHEIDHL 148
>gi|383318247|ref|YP_005379089.1| peptide deformylase [Frateuria aurantia DSM 6220]
gi|379045351|gb|AFC87407.1| peptide deformylase [Frateuria aurantia DSM 6220]
Length = 168
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 69/113 (61%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M++ MY +G+GL+A QV ++ Q++V + +R + L+NPR+ + + Y+EGC
Sbjct: 35 MYETMYAANGVGLAATQVNVHQQVLVADMSEDREA--PMALINPRIVAREGEQV-YQEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LSFPGI ADV R +V ++A D++G V + A QHE DHL +VFV
Sbjct: 92 LSFPGIFADVTRALAVTVEAVDVDGKPLRVDVDGPLAVCIQHEMDHLAGKVFV 144
>gi|146313352|ref|YP_001178426.1| peptide deformylase [Enterobacter sp. 638]
gi|167012063|sp|A4WF95.1|DEF_ENT38 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|145320228|gb|ABP62375.1| peptide deformylase [Enterobacter sp. 638]
Length = 169
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 64/107 (59%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY +GIGL+A QV I+ +++V + V E E E +VL+NP + + S + EEGC
Sbjct: 35 MFDTMYAEEGIGLAATQVDIHKRIIVID-VSENRE-ERLVLINPELLEQSGET-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P A V R E VKI A D +G F + DL A QHE DHL
Sbjct: 92 LSIPEQRALVPRAEKVKIRALDRDGKSFELEADDLLAICIQHEMDHL 138
>gi|260574964|ref|ZP_05842966.1| peptide deformylase [Rhodobacter sp. SW2]
gi|259022969|gb|EEW26263.1| peptide deformylase [Rhodobacter sp. SW2]
Length = 181
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERG-EGEEIVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQ+G+ QL+V + V + + + NP V S + YEEG
Sbjct: 34 MLETMYDAPGIGLAAPQLGVTKQLIVMDCVKDPALTARPMAMFNPVVTWASEDLSTYEEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P +A++ERP V++ ++G + L A QHE DHL
Sbjct: 94 CLSLPNQYAEIERPSEVRVRWTGLDGVEQEEHFTGLWATCVQHEIDHL 141
>gi|149913450|ref|ZP_01901983.1| peptide deformylase [Roseobacter sp. AzwK-3b]
gi|149812570|gb|EDM72399.1| peptide deformylase [Roseobacter sp. AzwK-3b]
Length = 174
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPV-GERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQ+G+ +L+V + V GE +V+ NP + S+ M YEEG
Sbjct: 34 MLETMYDAPGIGLAAPQIGVLDRLIVMDCVKGENETPRPLVMFNPEIVASSDVMNVYEEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P +A+V+RPE+V + D +G + + L A QHE DHL
Sbjct: 94 CLSIPEEYAEVKRPEAVDVRWIDRDGNEQTETFDGLWATCVQHEIDHL 141
>gi|126728524|ref|ZP_01744340.1| peptide deformylase [Sagittula stellata E-37]
gi|126711489|gb|EBA10539.1| peptide deformylase [Sagittula stellata E-37]
Length = 175
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 65/110 (59%), Gaps = 4/110 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE---IVLVNPRVNKYSNKMIPYE 57
M + MY GIGL+APQ+G+ +L+V + + GE+ +V+ NPRV S++ YE
Sbjct: 34 MLETMYDAPGIGLAAPQIGVLSRLIVLD-CAKSDNGEDARPLVMFNPRVIASSDEQNVYE 92
Query: 58 EGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
EGCLS P +A+VERP V ++ D +G + + L A QHE DHL
Sbjct: 93 EGCLSIPEQYAEVERPRVVDVEWLDRDGMLRTETFDGLWATCVQHEIDHL 142
>gi|307943158|ref|ZP_07658503.1| peptide deformylase [Roseibium sp. TrichSKD4]
gi|307773954|gb|EFO33170.1| peptide deformylase [Roseibium sp. TrichSKD4]
Length = 196
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 59/107 (55%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A Q+G+ +L V + E + +V +NP++ S Y+EGC
Sbjct: 57 MFETMYAAPGIGLAASQIGVLKRLFVLDVAKEDAPKDPMVFINPKIVWSSEDTSVYQEGC 116
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + D+ERP V++ + +GA + L A QHE DHL
Sbjct: 117 LSIPDYYEDIERPAKVRVQFLNRDGAEQEMEADGLLATCIQHELDHL 163
>gi|15618975|ref|NP_225261.1| peptide deformylase [Chlamydophila pneumoniae CWL029]
gi|15836598|ref|NP_301122.1| peptide deformylase [Chlamydophila pneumoniae J138]
gi|16753049|ref|NP_445322.1| peptide deformylase [Chlamydophila pneumoniae AR39]
gi|6225254|sp|Q9Z6J2.1|DEF_CHLPN RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|4377403|gb|AAD19204.1| Polypeptide Deformylase [Chlamydophila pneumoniae CWL029]
gi|7189698|gb|AAF38582.1| polypeptide deformylase [Chlamydophila pneumoniae AR39]
gi|8979440|dbj|BAA99274.1| polypeptide deformylase [Chlamydophila pneumoniae J138]
Length = 186
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 62/113 (54%), Gaps = 6/113 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M D M G+GL+APQVG NV L V E +GE I V +NP ++ S I
Sbjct: 34 MCDTMEAHRGVGLAAPQVGKNVSLFVMCVDRETEDGELIFSESPRVFINPVLSDPSETPI 93
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
+EGCLS PG+ +V RP+ + + A D+NG F+ L AR+ HE DHL
Sbjct: 94 IGKEGCLSIPGLRGEVFRPQKITVTAMDLNGKIFTEHLEGFTARIIMHETDHL 146
>gi|15600920|ref|NP_232550.1| peptide deformylase [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121587986|ref|ZP_01677739.1| polypeptide deformylase [Vibrio cholerae 2740-80]
gi|121729670|ref|ZP_01682131.1| polypeptide deformylase [Vibrio cholerae V52]
gi|147672038|ref|YP_001215964.1| peptide deformylase [Vibrio cholerae O395]
gi|153819711|ref|ZP_01972378.1| polypeptide deformylase [Vibrio cholerae NCTC 8457]
gi|153822662|ref|ZP_01975329.1| polypeptide deformylase [Vibrio cholerae B33]
gi|153825061|ref|ZP_01977728.1| peptide deformylase [Vibrio cholerae MZO-2]
gi|153830707|ref|ZP_01983374.1| polypeptide deformylase [Vibrio cholerae 623-39]
gi|227119327|ref|YP_002821222.1| polypeptide deformylase [Vibrio cholerae O395]
gi|227811776|ref|YP_002811786.1| polypeptide deformylase [Vibrio cholerae M66-2]
gi|229506685|ref|ZP_04396194.1| peptide deformylase [Vibrio cholerae BX 330286]
gi|229510520|ref|ZP_04400000.1| peptide deformylase [Vibrio cholerae B33]
gi|229517348|ref|ZP_04406793.1| peptide deformylase [Vibrio cholerae RC9]
gi|229527868|ref|ZP_04417259.1| peptide deformylase [Vibrio cholerae 12129(1)]
gi|229605159|ref|YP_002875863.1| peptide deformylase [Vibrio cholerae MJ-1236]
gi|254850416|ref|ZP_05239766.1| peptide deformylase 2 [Vibrio cholerae MO10]
gi|297579720|ref|ZP_06941647.1| polypeptide deformylase [Vibrio cholerae RC385]
gi|298500007|ref|ZP_07009813.1| peptide deformylase [Vibrio cholerae MAK 757]
gi|360038153|ref|YP_004939915.1| peptide deformylase [Vibrio cholerae O1 str. 2010EL-1786]
gi|379743593|ref|YP_005334645.1| peptide deformylase [Vibrio cholerae IEC224]
gi|417812193|ref|ZP_12458854.1| peptide deformylase [Vibrio cholerae HC-49A2]
gi|417816509|ref|ZP_12463139.1| peptide deformylase [Vibrio cholerae HCUF01]
gi|418330051|ref|ZP_12941085.1| peptide deformylase [Vibrio cholerae HC-06A1]
gi|418337409|ref|ZP_12946304.1| peptide deformylase [Vibrio cholerae HC-23A1]
gi|418339578|ref|ZP_12948466.1| peptide deformylase [Vibrio cholerae HC-28A1]
gi|418349079|ref|ZP_12953811.1| peptide deformylase [Vibrio cholerae HC-43A1]
gi|418353356|ref|ZP_12956081.1| peptide deformylase [Vibrio cholerae HC-61A1]
gi|419824183|ref|ZP_14347712.1| peptide deformylase [Vibrio cholerae CP1033(6)]
gi|419828151|ref|ZP_14351642.1| peptide deformylase [Vibrio cholerae HC-1A2]
gi|419833073|ref|ZP_14356534.1| peptide deformylase [Vibrio cholerae HC-61A2]
gi|419836953|ref|ZP_14360393.1| peptide deformylase [Vibrio cholerae HC-46B1]
gi|421317305|ref|ZP_15767875.1| peptide deformylase [Vibrio cholerae CP1032(5)]
gi|421319750|ref|ZP_15770308.1| peptide deformylase [Vibrio cholerae CP1038(11)]
gi|421323793|ref|ZP_15774320.1| peptide deformylase [Vibrio cholerae CP1041(14)]
gi|421331850|ref|ZP_15782329.1| peptide deformylase [Vibrio cholerae CP1046(19)]
gi|421335482|ref|ZP_15785945.1| peptide deformylase [Vibrio cholerae CP1048(21)]
gi|421340879|ref|ZP_15791309.1| peptide deformylase [Vibrio cholerae HC-20A2]
gi|421343739|ref|ZP_15794143.1| peptide deformylase [Vibrio cholerae HC-43B1]
gi|421346510|ref|ZP_15796894.1| peptide deformylase [Vibrio cholerae HC-46A1]
gi|421349831|ref|ZP_15800200.1| peptide deformylase [Vibrio cholerae HE-25]
gi|421355312|ref|ZP_15805643.1| peptide deformylase [Vibrio cholerae HE-45]
gi|422307705|ref|ZP_16394861.1| peptide deformylase [Vibrio cholerae CP1035(8)]
gi|422885319|ref|ZP_16931758.1| peptide deformylase [Vibrio cholerae HC-40A1]
gi|422898030|ref|ZP_16935449.1| peptide deformylase [Vibrio cholerae HC-48A1]
gi|422904187|ref|ZP_16939139.1| peptide deformylase [Vibrio cholerae HC-70A1]
gi|422910448|ref|ZP_16945088.1| peptide deformylase [Vibrio cholerae HE-09]
gi|422915462|ref|ZP_16949911.1| peptide deformylase [Vibrio cholerae HFU-02]
gi|422918748|ref|ZP_16953049.1| peptide deformylase [Vibrio cholerae HC-02A1]
gi|422920436|ref|ZP_16953756.1| peptide deformylase [Vibrio cholerae BJG-01]
gi|422927086|ref|ZP_16960091.1| peptide deformylase [Vibrio cholerae HC-38A1]
gi|423146426|ref|ZP_17133994.1| peptide deformylase [Vibrio cholerae HC-19A1]
gi|423148186|ref|ZP_17135564.1| peptide deformylase [Vibrio cholerae HC-21A1]
gi|423151972|ref|ZP_17139203.1| peptide deformylase [Vibrio cholerae HC-22A1]
gi|423158594|ref|ZP_17145607.1| peptide deformylase [Vibrio cholerae HC-32A1]
gi|423162399|ref|ZP_17149271.1| peptide deformylase [Vibrio cholerae HC-33A2]
gi|423162593|ref|ZP_17149459.1| peptide deformylase [Vibrio cholerae HC-48B2]
gi|423732418|ref|ZP_17705715.1| peptide deformylase [Vibrio cholerae HC-17A1]
gi|423734397|ref|ZP_17707610.1| peptide deformylase [Vibrio cholerae HC-41B1]
gi|423737059|ref|ZP_17710165.1| peptide deformylase [Vibrio cholerae HC-50A2]
gi|423779999|ref|ZP_17714083.1| peptide deformylase [Vibrio cholerae HC-55C2]
gi|423840301|ref|ZP_17717831.1| peptide deformylase [Vibrio cholerae HC-59A1]
gi|423900677|ref|ZP_17728035.1| peptide deformylase [Vibrio cholerae HC-62A1]
gi|423912218|ref|ZP_17728734.1| peptide deformylase [Vibrio cholerae HC-77A1]
gi|423938956|ref|ZP_17732440.1| peptide deformylase [Vibrio cholerae HE-40]
gi|423969087|ref|ZP_17735989.1| peptide deformylase [Vibrio cholerae HE-46]
gi|423999309|ref|ZP_17742502.1| peptide deformylase [Vibrio cholerae HC-02C1]
gi|424000045|ref|ZP_17743202.1| peptide deformylase [Vibrio cholerae HC-17A2]
gi|424004677|ref|ZP_17747682.1| peptide deformylase [Vibrio cholerae HC-37A1]
gi|424008679|ref|ZP_17751627.1| peptide deformylase [Vibrio cholerae HC-44C1]
gi|424011328|ref|ZP_17754196.1| peptide deformylase [Vibrio cholerae HC-55B2]
gi|424021152|ref|ZP_17760922.1| peptide deformylase [Vibrio cholerae HC-59B1]
gi|424021838|ref|ZP_17761547.1| peptide deformylase [Vibrio cholerae HC-62B1]
gi|424028488|ref|ZP_17768085.1| peptide deformylase [Vibrio cholerae HC-69A1]
gi|424587778|ref|ZP_18027350.1| peptide deformylase [Vibrio cholerae CP1030(3)]
gi|424591075|ref|ZP_18030508.1| peptide deformylase [Vibrio cholerae CP1037(10)]
gi|424592590|ref|ZP_18032005.1| peptide deformylase [Vibrio cholerae CP1040(13)]
gi|424596450|ref|ZP_18035757.1| peptide deformylase [Vibrio Cholerae CP1044(17)]
gi|424603304|ref|ZP_18042438.1| peptide deformylase [Vibrio cholerae CP1047(20)]
gi|424604094|ref|ZP_18043137.1| peptide deformylase [Vibrio cholerae CP1050(23)]
gi|424608044|ref|ZP_18046978.1| peptide deformylase [Vibrio cholerae HC-39A1]
gi|424614682|ref|ZP_18053462.1| peptide deformylase [Vibrio cholerae HC-41A1]
gi|424617166|ref|ZP_18055851.1| peptide deformylase [Vibrio cholerae HC-42A1]
gi|424619475|ref|ZP_18058078.1| peptide deformylase [Vibrio cholerae HC-47A1]
gi|424626367|ref|ZP_18064817.1| peptide deformylase [Vibrio cholerae HC-50A1]
gi|424627262|ref|ZP_18065626.1| peptide deformylase [Vibrio cholerae HC-51A1]
gi|424631059|ref|ZP_18069282.1| peptide deformylase [Vibrio cholerae HC-52A1]
gi|424637975|ref|ZP_18075972.1| peptide deformylase [Vibrio cholerae HC-55A1]
gi|424641876|ref|ZP_18079748.1| peptide deformylase [Vibrio cholerae HC-56A1]
gi|424643132|ref|ZP_18080910.1| peptide deformylase [Vibrio cholerae HC-56A2]
gi|424646391|ref|ZP_18084119.1| peptide deformylase [Vibrio cholerae HC-57A1]
gi|424650197|ref|ZP_18087800.1| peptide deformylase [Vibrio cholerae HC-57A2]
gi|424655028|ref|ZP_18092346.1| peptide deformylase [Vibrio cholerae HC-81A2]
gi|424659990|ref|ZP_18097238.1| peptide deformylase [Vibrio cholerae HE-16]
gi|440711116|ref|ZP_20891757.1| peptide deformylase [Vibrio cholerae 4260B]
gi|443505221|ref|ZP_21072162.1| peptide deformylase [Vibrio cholerae HC-64A1]
gi|443509120|ref|ZP_21075870.1| peptide deformylase [Vibrio cholerae HC-65A1]
gi|443512964|ref|ZP_21079587.1| peptide deformylase [Vibrio cholerae HC-67A1]
gi|443516509|ref|ZP_21083009.1| peptide deformylase [Vibrio cholerae HC-68A1]
gi|443521213|ref|ZP_21087543.1| peptide deformylase [Vibrio cholerae HC-71A1]
gi|443521371|ref|ZP_21087693.1| peptide deformylase [Vibrio cholerae HC-72A2]
gi|443525188|ref|ZP_21091384.1| peptide deformylase [Vibrio cholerae HC-78A1]
gi|443530144|ref|ZP_21096161.1| peptide deformylase [Vibrio cholerae HC-7A1]
gi|443532791|ref|ZP_21098794.1| peptide deformylase [Vibrio cholerae HC-80A1]
gi|443537509|ref|ZP_21103367.1| peptide deformylase [Vibrio cholerae HC-81A1]
gi|449058218|ref|ZP_21736514.1| Peptide deformylase [Vibrio cholerae O1 str. Inaba G4222]
gi|23396575|sp|Q9KN16.1|DEF2_VIBCH RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
Full=Polypeptide deformylase 2
gi|9657539|gb|AAF96063.1| polypeptide deformylase [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121547784|gb|EAX57873.1| polypeptide deformylase [Vibrio cholerae 2740-80]
gi|121628568|gb|EAX61048.1| polypeptide deformylase [Vibrio cholerae V52]
gi|126509754|gb|EAZ72348.1| polypeptide deformylase [Vibrio cholerae NCTC 8457]
gi|126519819|gb|EAZ77042.1| polypeptide deformylase [Vibrio cholerae B33]
gi|146314421|gb|ABQ18961.1| polypeptide deformylase [Vibrio cholerae O395]
gi|148873804|gb|EDL71939.1| polypeptide deformylase [Vibrio cholerae 623-39]
gi|149741386|gb|EDM55420.1| peptide deformylase [Vibrio cholerae MZO-2]
gi|227010918|gb|ACP07129.1| polypeptide deformylase [Vibrio cholerae M66-2]
gi|227014777|gb|ACP10986.1| polypeptide deformylase [Vibrio cholerae O395]
gi|229334230|gb|EEN99715.1| peptide deformylase [Vibrio cholerae 12129(1)]
gi|229345384|gb|EEO10357.1| peptide deformylase [Vibrio cholerae RC9]
gi|229352965|gb|EEO17905.1| peptide deformylase [Vibrio cholerae B33]
gi|229357036|gb|EEO21954.1| peptide deformylase [Vibrio cholerae BX 330286]
gi|229371645|gb|ACQ62067.1| peptide deformylase [Vibrio cholerae MJ-1236]
gi|254846121|gb|EET24535.1| peptide deformylase 2 [Vibrio cholerae MO10]
gi|297535366|gb|EFH74200.1| polypeptide deformylase [Vibrio cholerae RC385]
gi|297541988|gb|EFH78039.1| peptide deformylase [Vibrio cholerae MAK 757]
gi|340039659|gb|EGR00632.1| peptide deformylase [Vibrio cholerae HCUF01]
gi|340045013|gb|EGR05961.1| peptide deformylase [Vibrio cholerae HC-49A2]
gi|341630231|gb|EGS55334.1| peptide deformylase [Vibrio cholerae HC-70A1]
gi|341630948|gb|EGS55893.1| peptide deformylase [Vibrio cholerae HC-40A1]
gi|341631021|gb|EGS55964.1| peptide deformylase [Vibrio cholerae HC-48A1]
gi|341631951|gb|EGS56827.1| peptide deformylase [Vibrio cholerae HFU-02]
gi|341633581|gb|EGS58381.1| peptide deformylase [Vibrio cholerae HE-09]
gi|341634398|gb|EGS59158.1| peptide deformylase [Vibrio cholerae HC-02A1]
gi|341645134|gb|EGS69290.1| peptide deformylase [Vibrio cholerae HC-38A1]
gi|341650306|gb|EGS74177.1| peptide deformylase [Vibrio cholerae BJG-01]
gi|356421078|gb|EHH74584.1| peptide deformylase [Vibrio cholerae HC-19A1]
gi|356424318|gb|EHH77733.1| peptide deformylase [Vibrio cholerae HC-21A1]
gi|356426558|gb|EHH79866.1| peptide deformylase [Vibrio cholerae HC-06A1]
gi|356430793|gb|EHH83998.1| peptide deformylase [Vibrio cholerae HC-23A1]
gi|356435054|gb|EHH88214.1| peptide deformylase [Vibrio cholerae HC-32A1]
gi|356436521|gb|EHH89635.1| peptide deformylase [Vibrio cholerae HC-22A1]
gi|356440496|gb|EHH93437.1| peptide deformylase [Vibrio cholerae HC-33A2]
gi|356442978|gb|EHH95811.1| peptide deformylase [Vibrio cholerae HC-28A1]
gi|356445941|gb|EHH98741.1| peptide deformylase [Vibrio cholerae HC-43A1]
gi|356454421|gb|EHI07068.1| peptide deformylase [Vibrio cholerae HC-61A1]
gi|356457802|gb|EHI10309.1| peptide deformylase [Vibrio cholerae HC-48B2]
gi|356649307|gb|AET29361.1| peptide deformylase [Vibrio cholerae O1 str. 2010EL-1786]
gi|378796187|gb|AFC59657.1| peptide deformylase [Vibrio cholerae IEC224]
gi|395919763|gb|EJH30586.1| peptide deformylase [Vibrio cholerae CP1032(5)]
gi|395921807|gb|EJH32626.1| peptide deformylase [Vibrio cholerae CP1041(14)]
gi|395924638|gb|EJH35440.1| peptide deformylase [Vibrio cholerae CP1038(11)]
gi|395930648|gb|EJH41394.1| peptide deformylase [Vibrio cholerae CP1046(19)]
gi|395935164|gb|EJH45899.1| peptide deformylase [Vibrio cholerae CP1048(21)]
gi|395938363|gb|EJH49055.1| peptide deformylase [Vibrio cholerae HC-20A2]
gi|395942306|gb|EJH52983.1| peptide deformylase [Vibrio cholerae HC-43B1]
gi|395948037|gb|EJH58692.1| peptide deformylase [Vibrio cholerae HC-46A1]
gi|395949982|gb|EJH60601.1| peptide deformylase [Vibrio cholerae HE-45]
gi|395956448|gb|EJH67042.1| peptide deformylase [Vibrio cholerae HE-25]
gi|395964226|gb|EJH74461.1| peptide deformylase [Vibrio cholerae HC-42A1]
gi|395965938|gb|EJH76075.1| peptide deformylase [Vibrio cholerae HC-56A2]
gi|395969065|gb|EJH78966.1| peptide deformylase [Vibrio cholerae HC-57A2]
gi|395971241|gb|EJH80926.1| peptide deformylase [Vibrio cholerae CP1030(3)]
gi|395972626|gb|EJH82212.1| peptide deformylase [Vibrio cholerae CP1047(20)]
gi|395980451|gb|EJH89702.1| peptide deformylase [Vibrio cholerae HC-47A1]
gi|408009199|gb|EKG47116.1| peptide deformylase [Vibrio cholerae HC-41A1]
gi|408009855|gb|EKG47743.1| peptide deformylase [Vibrio cholerae HC-50A1]
gi|408015529|gb|EKG53110.1| peptide deformylase [Vibrio cholerae HC-39A1]
gi|408021068|gb|EKG58343.1| peptide deformylase [Vibrio cholerae HC-56A1]
gi|408021176|gb|EKG58443.1| peptide deformylase [Vibrio cholerae HC-55A1]
gi|408028930|gb|EKG65770.1| peptide deformylase [Vibrio cholerae HC-52A1]
gi|408033069|gb|EKG69630.1| peptide deformylase [Vibrio cholerae CP1037(10)]
gi|408040852|gb|EKG77004.1| peptide deformylase [Vibrio cholerae HC-57A1]
gi|408042710|gb|EKG78748.1| peptide deformylase [Vibrio cholerae CP1040(13)]
gi|408049434|gb|EKG84644.1| peptide deformylase [Vibrio Cholerae CP1044(17)]
gi|408050672|gb|EKG85819.1| peptide deformylase [Vibrio cholerae CP1050(23)]
gi|408051180|gb|EKG86291.1| peptide deformylase [Vibrio cholerae HE-16]
gi|408058579|gb|EKG93370.1| peptide deformylase [Vibrio cholerae HC-81A2]
gi|408060989|gb|EKG95587.1| peptide deformylase [Vibrio cholerae HC-51A1]
gi|408613846|gb|EKK87132.1| peptide deformylase [Vibrio cholerae CP1033(6)]
gi|408619219|gb|EKK92257.1| peptide deformylase [Vibrio cholerae CP1035(8)]
gi|408620917|gb|EKK93921.1| peptide deformylase [Vibrio cholerae HC-17A1]
gi|408623224|gb|EKK96178.1| peptide deformylase [Vibrio cholerae HC-1A2]
gi|408631070|gb|EKL03635.1| peptide deformylase [Vibrio cholerae HC-41B1]
gi|408638564|gb|EKL10458.1| peptide deformylase [Vibrio cholerae HC-55C2]
gi|408647926|gb|EKL19370.1| peptide deformylase [Vibrio cholerae HC-59A1]
gi|408650397|gb|EKL21672.1| peptide deformylase [Vibrio cholerae HC-61A2]
gi|408651600|gb|EKL22852.1| peptide deformylase [Vibrio cholerae HC-50A2]
gi|408653114|gb|EKL24291.1| peptide deformylase [Vibrio cholerae HC-62A1]
gi|408664289|gb|EKL35128.1| peptide deformylase [Vibrio cholerae HC-77A1]
gi|408664575|gb|EKL35408.1| peptide deformylase [Vibrio cholerae HE-40]
gi|408667217|gb|EKL37968.1| peptide deformylase [Vibrio cholerae HE-46]
gi|408849698|gb|EKL89711.1| peptide deformylase [Vibrio cholerae HC-02C1]
gi|408850557|gb|EKL90509.1| peptide deformylase [Vibrio cholerae HC-37A1]
gi|408854794|gb|EKL94542.1| peptide deformylase [Vibrio cholerae HC-17A2]
gi|408857503|gb|EKL97191.1| peptide deformylase [Vibrio cholerae HC-46B1]
gi|408865026|gb|EKM04439.1| peptide deformylase [Vibrio cholerae HC-59B1]
gi|408865465|gb|EKM04868.1| peptide deformylase [Vibrio cholerae HC-44C1]
gi|408870893|gb|EKM10158.1| peptide deformylase [Vibrio cholerae HC-55B2]
gi|408877867|gb|EKM16892.1| peptide deformylase [Vibrio cholerae HC-69A1]
gi|408880860|gb|EKM19778.1| peptide deformylase [Vibrio cholerae HC-62B1]
gi|439972603|gb|ELP48846.1| peptide deformylase [Vibrio cholerae 4260B]
gi|443430519|gb|ELS73088.1| peptide deformylase [Vibrio cholerae HC-64A1]
gi|443434357|gb|ELS80514.1| peptide deformylase [Vibrio cholerae HC-65A1]
gi|443438151|gb|ELS87881.1| peptide deformylase [Vibrio cholerae HC-67A1]
gi|443442260|gb|ELS95573.1| peptide deformylase [Vibrio cholerae HC-68A1]
gi|443445242|gb|ELT01964.1| peptide deformylase [Vibrio cholerae HC-71A1]
gi|443452694|gb|ELT12876.1| peptide deformylase [Vibrio cholerae HC-72A2]
gi|443456551|gb|ELT20222.1| peptide deformylase [Vibrio cholerae HC-78A1]
gi|443459714|gb|ELT27108.1| peptide deformylase [Vibrio cholerae HC-7A1]
gi|443464137|gb|ELT35085.1| peptide deformylase [Vibrio cholerae HC-80A1]
gi|443467518|gb|ELT42174.1| peptide deformylase [Vibrio cholerae HC-81A1]
gi|448263570|gb|EMB00811.1| Peptide deformylase [Vibrio cholerae O1 str. Inaba G4222]
Length = 168
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 65/108 (60%), Gaps = 4/108 (3%)
Query: 1 MFDVMYKTD-GIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
+ D +Y TD GIGL+APQVG ++V + R + +VL+NP+V SNK + +EG
Sbjct: 34 LLDTLYATDNGIGLAAPQVGREEAIVVIDLSDNRDQ--PLVLINPKVVSGSNKEMG-QEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P +ADVER SV ++A D G + SD A V QHE DHL
Sbjct: 91 CLSVPDYYADVERYTSVVVEALDREGKPLRIETSDFLAIVMQHEIDHL 138
>gi|346310432|ref|ZP_08852448.1| polypeptide deformylase [Collinsella tanakaei YIT 12063]
gi|345897722|gb|EGX67633.1| polypeptide deformylase [Collinsella tanakaei YIT 12063]
Length = 178
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 70/115 (60%), Gaps = 4/115 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNP-VGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
M D M++ G GL+APQVG +QL + + + + + +L+NP + + S+ ++PY EG
Sbjct: 35 MKDDMFENGGCGLAAPQVGELIQLAIVDTDYSDESDYDPYILINPVIVEQSDNLVPYNEG 94
Query: 60 CLSFPGIHADVERPESVKIDARDING--ARFSVSLSDLPARVFQHEFDHLQVFVL 112
CLS PGI+ +++RP+ V ++A +++G R+ S DL QHE DHL +
Sbjct: 95 CLSIPGINCEIKRPDHVVVEAYNLDGDLMRYEAS-GDLMCVCLQHEIDHLHGMTM 148
>gi|342903781|ref|ZP_08725586.1| Peptide deformylase [Haemophilus haemolyticus M21621]
gi|341954451|gb|EGT80931.1| Peptide deformylase [Haemophilus haemolyticus M21621]
Length = 169
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 63/107 (58%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+APQV I +++ + G++ ++VL+NP + S EEGC
Sbjct: 35 MFDTMYQEEGIGLAAPQVDILQRIITIDVEGDKQN--QLVLINPEI-LASEGETGIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG A V R E VK+ A D +G F++ L A QHE DHL
Sbjct: 92 LSIPGFRALVPRKEKVKVRALDRDGKEFTLDADGLLAICIQHEIDHL 138
>gi|417842405|ref|ZP_12488491.1| Peptide deformylase [Haemophilus haemolyticus M21127]
gi|341951696|gb|EGT78254.1| Peptide deformylase [Haemophilus haemolyticus M21127]
Length = 169
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 63/107 (58%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+APQV I +++ + G++ ++VL+NP + S EEGC
Sbjct: 35 MFDTMYQEEGIGLAAPQVDILQRIITIDVEGDKQN--QLVLINPEI-LASEGETGIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG A V R E VK+ A D +G F++ L A QHE DHL
Sbjct: 92 LSIPGFRALVPRKEKVKVRALDRDGKEFTLDADGLLAICIQHEIDHL 138
>gi|261749262|ref|YP_003256947.1| peptide deformylase [Blattabacterium sp. (Periplaneta americana)
str. BPLAN]
gi|261497354|gb|ACX83804.1| peptide deformylase [Blattabacterium sp. (Periplaneta americana)
str. BPLAN]
Length = 180
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 64/113 (56%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI-----VLVNPRVNKYSNKMIP 55
MF+ ++K GIGL+APQ+G N++L + G++I V +N R+ K K
Sbjct: 36 MFETIHKVKGIGLAAPQIGKNIRLFIVETPYLLENGKDIDNYKEVFINARILKIHGKEYE 95
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
+ EGCLS PGI V+R V I+ D N + +L + ARV QHE+DH++
Sbjct: 96 FNEGCLSIPGIMGYVKRKSHVSIEYYDHNWKKKKETLKGICARVIQHEYDHME 148
>gi|120552986|ref|YP_957337.1| peptide deformylase [Marinobacter aquaeolei VT8]
gi|120322835|gb|ABM17150.1| peptide deformylase [Marinobacter aquaeolei VT8]
Length = 167
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++ Q++V + ++ E V +NP+V ++ +EGC
Sbjct: 34 MFETMYDARGIGLAATQVDVHKQIIVMDLSEDKTEPR--VFINPKVEVLDGELEAMQEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + DV+R E +I A+D +G F + L A QHE DHL
Sbjct: 92 LSVPGFYEDVKRIEHCRITAKDRDGKEFVLEAEGLLAVCIQHEMDHL 138
>gi|262277954|ref|ZP_06055747.1| peptide deformylase [alpha proteobacterium HIMB114]
gi|262225057|gb|EEY75516.1| peptide deformylase [alpha proteobacterium HIMB114]
Length = 171
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 61/106 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ GIGL+APQVGI +++V + E + + + NP++ S+++ EEGC
Sbjct: 35 MLETMYQAPGIGLAAPQVGILKKVIVIDLAKEDEPKKPLFIANPKIIWKSDELSSREEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDH 106
LS PG A+V RP K+ D +G + + DL + QHE DH
Sbjct: 95 LSIPGYFAEVVRPTKCKLQYLDYDGKQQEIEAEDLLSTCIQHEVDH 140
>gi|373467154|ref|ZP_09558455.1| peptide deformylase [Haemophilus sp. oral taxon 851 str. F0397]
gi|371759113|gb|EHO47859.1| peptide deformylase [Haemophilus sp. oral taxon 851 str. F0397]
Length = 189
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 63/107 (58%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+APQV I +++ + G++ ++VL+NP + S EEGC
Sbjct: 55 MFDTMYQEEGIGLAAPQVDILQRIITIDVEGDKQN--QLVLINPEILA-SEGETGIEEGC 111
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG A V R E VK+ A D +G F++ L A QHE DHL
Sbjct: 112 LSIPGFRALVPRKEKVKVRALDRDGKEFTLDADGLLAICIQHEIDHL 158
>gi|393724796|ref|ZP_10344723.1| N-formylmethionyl-tRNA deformylase [Sphingomonas sp. PAMC 26605]
Length = 176
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 60/114 (52%), Gaps = 7/114 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-------IVLVNPRVNKYSNKM 53
MFD MY GIGL+A QVGI +++V + GEGE+ +V +NP + S +
Sbjct: 35 MFDTMYDARGIGLAATQVGIEQRIVVIDLQETEGEGEDAKPVRSPLVYINPELISVSEET 94
Query: 54 IPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
Y EGCLS P +A+VERP S + D GA L A QHE DHL
Sbjct: 95 SFYNEGCLSIPEQYAEVERPTSCRARWLDEQGAAQEGDFDGLLATALQHEIDHL 148
>gi|319406474|emb|CBI80115.1| polypeptide deformylase [Bartonella sp. 1-1C]
Length = 176
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 63/107 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QVG+ ++++V + + +V++NP + S++ Y+EGC
Sbjct: 35 MLETMYNAQGIGLAAVQVGVPLRMLVVDIHPKDAPKNPLVIINPEILWVSDERSVYKEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P A+VERP+ + + RD G + + +DL A QHE DHL
Sbjct: 95 LSIPDYFAEVERPKCLCMCYRDREGKQVEIEANDLLATCLQHEIDHL 141
>gi|337289130|ref|YP_004628602.1| Peptide deformylase [Thermodesulfobacterium sp. OPB45]
gi|334902868|gb|AEH23674.1| Peptide deformylase [Thermodesulfobacterium geofontis OPF15]
Length = 164
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 62/107 (57%), Gaps = 1/107 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++MYK GIGL+A QVGI + + + G+ + V +NP + + I YEEGC
Sbjct: 32 MAEIMYKAKGIGLAANQVGILKRFFIMDVSQREGKNKLEVYINPEIVFTEGETI-YEEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG A V+R + I A DI+G L ++ A VFQHE+DHL
Sbjct: 91 LSIPGYFAPVKRYAKIYIKAYDIDGKPIERELDEISAIVFQHEYDHL 137
>gi|291285975|ref|YP_003502791.1| peptide deformylase [Denitrovibrio acetiphilus DSM 12809]
gi|290883135|gb|ADD66835.1| peptide deformylase [Denitrovibrio acetiphilus DSM 12809]
Length = 175
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + M+ G+GL+APQVGI+ +L+V + EG + ++NP + + + EEGC
Sbjct: 34 MVETMHARSGVGLAAPQVGISKRLIVIDTSAGENEGMLLRVINPEIISAEGEQVG-EEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + V R E V + A D NG +++ AR FQHE DHL
Sbjct: 93 LSIPGEYEPVRRAEKVTVKAMDENGKPYTMEAEGFLARAFQHEIDHL 139
>gi|407976014|ref|ZP_11156916.1| peptide deformylase [Nitratireductor indicus C115]
gi|407428515|gb|EKF41197.1| peptide deformylase [Nitratireductor indicus C115]
Length = 176
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 61/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY GIGL+A QVG ++++V + + E +V++NP + S+ +EEGC
Sbjct: 35 MLDTMYDAPGIGLAAIQVGEPLRMLVVDVSDKDEEPAPLVVLNPEIVARSDARNVHEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +ADVERP V ++ DI G +V L A QHE DHL
Sbjct: 95 LSIPDYYADVERPARVTVNYMDIEGKMQTVEADGLLATCLQHEIDHL 141
>gi|406672903|ref|ZP_11080128.1| peptide deformylase [Bergeyella zoohelcum CCUG 30536]
gi|423315649|ref|ZP_17293554.1| peptide deformylase [Bergeyella zoohelcum ATCC 43767]
gi|405585753|gb|EKB59556.1| peptide deformylase [Bergeyella zoohelcum ATCC 43767]
gi|405587447|gb|EKB61175.1| peptide deformylase [Bergeyella zoohelcum CCUG 30536]
Length = 190
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 71/119 (59%), Gaps = 11/119 (9%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGERGEGEEI---------VLVNPRVNKY 49
M + M+ ++GIGL+APQ+G++++L V + P+ E + E+I V +N ++ +
Sbjct: 34 MVETMHASNGIGLAAPQIGLDIRLFVVDVTPLAEDEDYEDIADELKDFKKVFINAQMIEE 93
Query: 50 SNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
+ + EGCLS P + DV+R E++ I+ D N + SD+ ARV QHE+DHL+
Sbjct: 94 TGAEWKFNEGCLSIPDVREDVKRKETITIEYWDENFEYHKETFSDIRARVIQHEYDHLE 152
>gi|386041821|ref|YP_005960775.1| peptide deformylase [Paenibacillus polymyxa M1]
gi|343097859|emb|CCC86068.1| peptide deformylase [Paenibacillus polymyxa M1]
Length = 165
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 65/108 (60%), Gaps = 6/108 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPR-VNKYSNKMIPYEEG 59
M D MY+ +G+GL+APQVGI +L+V + E G I ++NP V + ++ P EG
Sbjct: 35 MADTMYEAEGVGLAAPQVGILKRLIVVDAGDEHGL---IKMINPEIVAEEGEQLGP--EG 89
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS PG++ DV R E V + + G +V+ + L +R FQHE DHL
Sbjct: 90 CLSIPGLNGDVRRAEKVTVKGLNREGKAITVTATGLLSRAFQHEIDHL 137
>gi|403386881|ref|ZP_10928938.1| peptide deformylase [Clostridium sp. JC122]
Length = 146
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 67/107 (62%), Gaps = 6/107 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+++G+GL+APQVGI +++V + GEG IVL+NP + + +++ E GC
Sbjct: 35 MKETMYESNGVGLAAPQVGILKRVVVVDI----GEGP-IVLINPEILESKGEVVDLE-GC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P H V RP+ VK+ A + +G F++ D AR F HE DHL
Sbjct: 89 LSIPNEHGKVRRPQYVKVKAMNEDGEWFTIEGEDFLARAFCHEIDHL 135
>gi|167834978|ref|ZP_02461861.1| peptide deformylase [Burkholderia thailandensis MSMB43]
Length = 167
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 66/113 (58%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QV ++ +++V + E+ E V +NP + S+ YEEGC
Sbjct: 35 MAETMYAAPGIGLAATQVDVHERVIVIDVSEEKNELR--VFINPELVWTSDGKQVYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LS PG++ +VERP+ V++ A D G F + L A QHE DHL +VFV
Sbjct: 93 LSVPGVYDEVERPDRVRVRALDEKGETFEIDCEGLLAVCIQHEMDHLIGRVFV 145
>gi|253991650|ref|YP_003043006.1| peptide deformylase [Photorhabdus asymbiotica]
gi|253783100|emb|CAQ86265.1| peptide deformylase [Photorhabdus asymbiotica]
Length = 170
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 61/107 (57%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY DGIGL+A QV I+ +++V + R E +VL+NP + + + K EEGC
Sbjct: 35 MFETMYAEDGIGLAATQVDIHQRIIVIDVSDTRNE--RLVLINPELLEKNGKT-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P A V R E VKI A D NG F + L A QHE DHL
Sbjct: 92 LSIPEQRALVSRAEKVKIRALDYNGQSFELQADGLLAICIQHEMDHL 138
>gi|78355060|ref|YP_386509.1| peptide deformylase [Desulfovibrio alaskensis G20]
gi|78217465|gb|ABB36814.1| peptide deformylase [Desulfovibrio alaskensis G20]
Length = 169
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY DGIGL+APQVG +L+V + G + +NPR+ K + EEGC
Sbjct: 34 MAETMYDADGIGLAAPQVGATCRLIVVDVSGPEAREDLRTYINPRLELLEGK-VDTEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + + V R E V++ A D++G + L + QHE DHL
Sbjct: 93 LSVPALRSKVTRTEKVRLHATDLDGNAVCIDADGLLSICLQHEIDHL 139
>gi|310642740|ref|YP_003947498.1| peptide deformylase [Paenibacillus polymyxa SC2]
gi|309247690|gb|ADO57257.1| Peptide deformylase [Paenibacillus polymyxa SC2]
Length = 159
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 65/108 (60%), Gaps = 6/108 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPR-VNKYSNKMIPYEEG 59
M D MY+ +G+GL+APQVGI +L+V + E G I ++NP V + ++ P EG
Sbjct: 29 MADTMYEAEGVGLAAPQVGILKRLIVVDAGDEHGL---IKMINPEIVAEEGEQLGP--EG 83
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS PG++ DV R E V + + G +V+ + L +R FQHE DHL
Sbjct: 84 CLSIPGLNGDVRRAEKVTVKGLNREGKAITVTATGLLSRAFQHEIDHL 131
>gi|309789939|ref|ZP_07684515.1| peptide deformylase [Oscillochloris trichoides DG-6]
gi|308227959|gb|EFO81611.1| peptide deformylase [Oscillochloris trichoides DG6]
Length = 185
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 67/120 (55%), Gaps = 12/120 (10%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN---PVGERGEG--------EEIVLVNPRVNKY 49
MF+ M K+ G+GL+APQVG+ +QL + + +R +G EE VL+NPR+ K
Sbjct: 39 MFETMRKSHGVGLAAPQVGLPIQLCIIEIPAEIEQRDDGTEVEVAPAEEYVLINPRIVKT 98
Query: 50 SNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSD-LPARVFQHEFDHLQ 108
S I +EGCLS PG + V R V ++ +D NG + + +D L QHE DHL
Sbjct: 99 SGDEIMRDEGCLSLPGWYGMVPRHSWVTVEYQDFNGKQHRLRKADGLLGWAIQHEVDHLH 158
>gi|296535343|ref|ZP_06897545.1| peptide deformylase [Roseomonas cervicalis ATCC 49957]
gi|296264327|gb|EFH10750.1| peptide deformylase [Roseomonas cervicalis ATCC 49957]
Length = 177
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 62/107 (57%), Gaps = 1/107 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MYK GIGL+APQ+G ++L+V + + + E V++NP + S ++ EEGC
Sbjct: 39 MLATMYKAPGIGLAAPQIGELLRLVVVD-LQPDEKPEPYVMINPEIVAASTELSSREEGC 97
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+V RP +K+ D+ GA+ + L A QHE DHL
Sbjct: 98 LSLPNQYAEVTRPAEIKVRWLDLEGAKREMQADGLLATCIQHEIDHL 144
>gi|424901711|ref|ZP_18325227.1| peptide deformylase [Burkholderia thailandensis MSMB43]
gi|390932086|gb|EIP89486.1| peptide deformylase [Burkholderia thailandensis MSMB43]
Length = 165
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 66/113 (58%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QV ++ +++V + E+ E V +NP + S+ YEEGC
Sbjct: 33 MAETMYAAPGIGLAATQVDVHERVIVIDVSEEKNELR--VFINPELVWTSDGKQVYEEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LS PG++ +VERP+ V++ A D G F + L A QHE DHL +VFV
Sbjct: 91 LSVPGVYDEVERPDRVRVRALDEKGETFEIDCEGLLAVCIQHEMDHLIGRVFV 143
>gi|319945035|ref|ZP_08019297.1| peptide deformylase [Lautropia mirabilis ATCC 51599]
gi|319741605|gb|EFV94030.1| peptide deformylase [Lautropia mirabilis ATCC 51599]
Length = 170
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QV ++ +++V + + + V +NP + S+ + YEEGC
Sbjct: 35 MAETMYAAPGIGLAATQVNVHERVVVIDITETHDQLQ--VFINPEITWSSDTLQSYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PGI+ VERP++V + A ++G F++ L A QHE DHL
Sbjct: 93 LSIPGIYDKVERPDAVTVTALGLDGKPFTLEADGLLAVCIQHEIDHL 139
>gi|257456003|ref|ZP_05621212.1| peptide deformylase [Enhydrobacter aerosaccus SK60]
gi|257446592|gb|EEV21626.1| peptide deformylase [Enhydrobacter aerosaccus SK60]
Length = 176
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 67/113 (59%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++QL+V + + E G + V +NP V ++++ YEEGC
Sbjct: 35 MFETMYAAKGIGLAATQVDEHIQLVVMD-LSEDG-SQPRVFINPIVTPLADELYSYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LS P + V+RP+ VKI+A D G F L A QHE DHL ++FV
Sbjct: 93 LSVPEYYDKVDRPKHVKIEALDAQGNPFVEEAQGLLAVCIQHEIDHLNGKIFV 145
>gi|254467295|ref|ZP_05080706.1| peptide deformylase [Rhodobacterales bacterium Y4I]
gi|206688203|gb|EDZ48685.1| peptide deformylase [Rhodobacterales bacterium Y4I]
Length = 182
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGER-GEGEEIVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQ+GI +L+V + V E G+ +V+ NP + S++ YEEG
Sbjct: 44 MLETMYAAPGIGLAAPQIGILQRLIVLDCVKEEDGDPRPLVMFNPEIIASSDETNVYEEG 103
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P +A+V RP+ V+++ D +G + L A QHE DHL
Sbjct: 104 CLSIPDQYAEVTRPKVVEVEWMDRSGNAQRETFDGLWATCVQHEIDHL 151
>gi|404406072|ref|ZP_10997656.1| peptide deformylase [Alistipes sp. JC136]
Length = 181
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 64/113 (56%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGERGEG---EEIVLVNPRVNKYSNKMIP 55
MF + + +G+GL+APQ+G N++L + + P GE + +NP + YS +
Sbjct: 34 MFLTLEEAEGVGLAAPQIGKNIRLFIIDCTPWGEEDPSCADYKRAFINPEIYAYSEEKKT 93
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
Y EGCLSFPGI ADV R ++++ D + + L A V QHE+DH++
Sbjct: 94 YNEGCLSFPGIRADVSRSLAIRMRYLDTDFVEHDEEFTGLKAWVIQHEYDHIE 146
>gi|323142780|ref|ZP_08077493.1| peptide deformylase [Succinatimonas hippei YIT 12066]
gi|322417425|gb|EFY08046.1| peptide deformylase [Succinatimonas hippei YIT 12066]
Length = 175
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 66/109 (60%), Gaps = 3/109 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGE--GEEIVLVNPRVNKYSNKMIPYEE 58
MF+ MY +GIGL+APQ+GI +++V + E G+ ++VL+NP++ + + EE
Sbjct: 35 MFETMYDDEGIGLAAPQIGIEKRIVVIDIPEEDGKQGKNKLVLINPKITAKEGE-VASEE 93
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
GCLS P A+++R E + ++ +D+NG + L A QHE DHL
Sbjct: 94 GCLSVPEYRAEIKRYEKITLECQDLNGQKQIYEADGLLAICMQHELDHL 142
>gi|209886650|ref|YP_002290507.1| peptide deformylase [Oligotropha carboxidovorans OM5]
gi|337739837|ref|YP_004631565.1| peptide deformylase Def [Oligotropha carboxidovorans OM5]
gi|386028855|ref|YP_005949630.1| peptide deformylase Def [Oligotropha carboxidovorans OM4]
gi|229487488|sp|B6JJP8.1|DEF_OLICO RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|209874846|gb|ACI94642.1| peptide deformylase [Oligotropha carboxidovorans OM5]
gi|336093923|gb|AEI01749.1| peptide deformylase Def [Oligotropha carboxidovorans OM4]
gi|336097501|gb|AEI05324.1| peptide deformylase Def [Oligotropha carboxidovorans OM5]
Length = 171
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 58/107 (54%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV + ++L+ + + GE V +NP + S + YEEGC
Sbjct: 35 MFETMYDAPGIGLAAIQVAVPLRLITMDLAKKEGESAPRVFINPEILSKSEDIAVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + +VERP SV++ D+ G L A QHE DHL
Sbjct: 95 LSIPEYYEEVERPASVRVRFMDLEGEVHEEDAEGLFATCIQHEIDHL 141
>gi|395788204|ref|ZP_10467779.1| peptide deformylase [Bartonella birtlesii LL-WM9]
gi|395409537|gb|EJF76125.1| peptide deformylase [Bartonella birtlesii LL-WM9]
Length = 176
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 63/107 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY G+GL+A Q+GI ++++V + + +V++NP + S++ Y+EGC
Sbjct: 35 MLDTMYNAQGVGLAAIQIGIPLRMLVIDVSRDDIPKNPLVVINPEILWLSDERNIYKEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP+ + + +D G + + DL A QHE DHL
Sbjct: 95 LSIPEYYAEVERPKRLYVRYQDRQGKQTEIETDDLLATCLQHEIDHL 141
>gi|255746035|ref|ZP_05419982.1| peptide deformylase [Vibrio cholera CIRS 101]
gi|262162126|ref|ZP_06031141.1| peptide deformylase [Vibrio cholerae INDRE 91/1]
gi|384422664|ref|YP_005632023.1| peptide deformylase [Vibrio cholerae LMA3984-4]
gi|417818897|ref|ZP_12465517.1| peptide deformylase [Vibrio cholerae HE39]
gi|421326763|ref|ZP_15777281.1| peptide deformylase [Vibrio cholerae CP1042(15)]
gi|423867709|ref|ZP_17721503.1| peptide deformylase [Vibrio cholerae HC-60A1]
gi|255735789|gb|EET91187.1| peptide deformylase [Vibrio cholera CIRS 101]
gi|262028201|gb|EEY46859.1| peptide deformylase [Vibrio cholerae INDRE 91/1]
gi|327485372|gb|AEA79778.1| Peptide deformylase [Vibrio cholerae LMA3984-4]
gi|340043611|gb|EGR04569.1| peptide deformylase [Vibrio cholerae HE39]
gi|395933688|gb|EJH44427.1| peptide deformylase [Vibrio cholerae CP1042(15)]
gi|408647311|gb|EKL18839.1| peptide deformylase [Vibrio cholerae HC-60A1]
Length = 145
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 65/108 (60%), Gaps = 4/108 (3%)
Query: 1 MFDVMYKTD-GIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
+ D +Y TD GIGL+APQVG ++V + R + +VL+NP+V SNK + +EG
Sbjct: 11 LLDTLYATDNGIGLAAPQVGREEAIVVIDLSDNRDQ--PLVLINPKVVSGSNKEMG-QEG 67
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P +ADVER SV ++A D G + SD A V QHE DHL
Sbjct: 68 CLSVPDYYADVERYTSVVVEALDREGKPLRIETSDFLAIVMQHEIDHL 115
>gi|398900910|ref|ZP_10649897.1| peptide deformylase [Pseudomonas sp. GM50]
gi|398180739|gb|EJM68317.1| peptide deformylase [Pseudomonas sp. GM50]
Length = 168
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP ++++ Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRSEPR--VFINPEFEVLTDEVDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ VKI A D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVKIKALDRDGQPYELIAEGLLAVCIQHECDHL 139
>gi|115372443|ref|ZP_01459752.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
gi|310819504|ref|YP_003951862.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
gi|115370656|gb|EAU69582.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
gi|309392576|gb|ADO70035.1| Peptide deformylase [Stigmatella aurantiaca DW4/3-1]
Length = 173
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY DG+GL+APQVGI +++V + + + + + ++NP + Y EGC
Sbjct: 34 MFETMYAADGVGLAAPQVGILQRIIVLDTTPRQPDSKPLAMINPEIVGMEGATT-YTEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LS PG DV+R V + D++G +++ DL A QHE DHL VFV
Sbjct: 93 LSIPGEAEDVDRAAIVTVKFLDVDGQEQTLTCDDLLAIAVQHETDHLDGTVFV 145
>gi|429744976|ref|ZP_19278431.1| peptide deformylase [Neisseria sp. oral taxon 020 str. F0370]
gi|429161635|gb|EKY04017.1| peptide deformylase [Neisseria sp. oral taxon 020 str. F0370]
Length = 167
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + + + YEEGC
Sbjct: 35 MFETMYEARGIGLAATQVDVHERVVVMDLSEDRSEPR--VFINPVIVEKDGQ-TTYEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PGI+ V R E VK++A D G +F++ L A QHE DHL VFV
Sbjct: 92 LSVPGIYDTVTRAERVKVEALDEKGEKFTLEADGLLAICVQHELDHLMGIVFV 144
>gi|338972103|ref|ZP_08627481.1| peptide deformylase [Bradyrhizobiaceae bacterium SG-6C]
gi|338234714|gb|EGP09826.1| peptide deformylase [Bradyrhizobiaceae bacterium SG-6C]
Length = 200
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 59/107 (55%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY GIGL+A QV + ++L+ + + GE E V +NP + S+++ YEEGC
Sbjct: 64 MFQTMYDAPGIGLAAIQVAVPLRLITMDLSKKEGEKEPRVFINPEILASSDELSVYEEGC 123
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + +VERP V++ D+ G L A QHE DHL
Sbjct: 124 LSIPEYYEEVERPARVRVRFMDLEGVMREEDAEGLYATCIQHEIDHL 170
>gi|296114064|ref|YP_003628002.1| peptide deformylase [Moraxella catarrhalis RH4]
gi|416156774|ref|ZP_11604688.1| peptide deformylase [Moraxella catarrhalis 101P30B1]
gi|416218714|ref|ZP_11625031.1| peptide deformylase [Moraxella catarrhalis 7169]
gi|416221639|ref|ZP_11625857.1| peptide deformylase [Moraxella catarrhalis 103P14B1]
gi|416230411|ref|ZP_11628410.1| peptide deformylase [Moraxella catarrhalis 46P47B1]
gi|416240362|ref|ZP_11632373.1| peptide deformylase [Moraxella catarrhalis BC1]
gi|416241442|ref|ZP_11632769.1| peptide deformylase [Moraxella catarrhalis BC7]
gi|416251546|ref|ZP_11637755.1| peptide deformylase [Moraxella catarrhalis CO72]
gi|295921758|gb|ADG62109.1| peptide deformylase [Moraxella catarrhalis BBH18]
gi|326559449|gb|EGE09872.1| peptide deformylase [Moraxella catarrhalis 7169]
gi|326561289|gb|EGE11648.1| peptide deformylase [Moraxella catarrhalis 46P47B1]
gi|326565177|gb|EGE15368.1| peptide deformylase [Moraxella catarrhalis 103P14B1]
gi|326566131|gb|EGE16288.1| peptide deformylase [Moraxella catarrhalis BC1]
gi|326572198|gb|EGE22194.1| peptide deformylase [Moraxella catarrhalis BC7]
gi|326572807|gb|EGE22792.1| peptide deformylase [Moraxella catarrhalis CO72]
gi|326574626|gb|EGE24562.1| peptide deformylase [Moraxella catarrhalis 101P30B1]
Length = 184
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 60/107 (56%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++QL+V + + V +NP+V ++ Y+EGC
Sbjct: 35 MFETMYDARGIGLAATQVDRHIQLIVMDLARKDEPPSPQVFINPKVTPLVDEHSSYQEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + +ERP V+I+A D +G F + L A QHE DHL
Sbjct: 95 LSVPEVFDTIERPSRVRIEALDKDGQPFEIEAEGLLAVCIQHEMDHL 141
>gi|194014710|ref|ZP_03053327.1| peptide deformylase [Bacillus pumilus ATCC 7061]
gi|194013736|gb|EDW23301.1| peptide deformylase [Bacillus pumilus ATCC 7061]
Length = 160
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 62/107 (57%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M + DG+GL+APQ+GI+ ++ V + +GE E I LVNP V + E GC
Sbjct: 35 MYDTMLELDGVGLAAPQIGISQRIAVVD-IGE--EPGRIDLVNPEVLEIKGSQTDIE-GC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFP ++ VERP VK+ A D G F++ AR HE DHL
Sbjct: 91 LSFPSLYGTVERPSYVKVKAFDKKGKPFTIEAEGFLARALLHEIDHL 137
>gi|416232552|ref|ZP_11628996.1| peptide deformylase [Moraxella catarrhalis 12P80B1]
gi|416248197|ref|ZP_11636116.1| peptide deformylase [Moraxella catarrhalis BC8]
gi|416256625|ref|ZP_11639801.1| peptide deformylase [Moraxella catarrhalis O35E]
gi|421780844|ref|ZP_16217331.1| peptide deformylase [Moraxella catarrhalis RH4]
gi|326567834|gb|EGE17938.1| peptide deformylase [Moraxella catarrhalis 12P80B1]
gi|326568164|gb|EGE18246.1| peptide deformylase [Moraxella catarrhalis BC8]
gi|326573749|gb|EGE23707.1| peptide deformylase [Moraxella catarrhalis O35E]
gi|407812140|gb|EKF82927.1| peptide deformylase [Moraxella catarrhalis RH4]
Length = 184
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 60/107 (56%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++QL+V + + V +NP+V ++ Y+EGC
Sbjct: 35 MFETMYDARGIGLAATQVDRHIQLIVMDLARKDEPPSPQVFINPKVTPLVDEHSSYQEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + +ERP V+I+A D +G F + L A QHE DHL
Sbjct: 95 LSVPEVFDTIERPSRVRIEALDKDGQPFEIEAEGLLAVCIQHEMDHL 141
>gi|302874748|ref|YP_003843381.1| peptide deformylase [Clostridium cellulovorans 743B]
gi|307690637|ref|ZP_07633083.1| peptide deformylase [Clostridium cellulovorans 743B]
gi|302577605|gb|ADL51617.1| peptide deformylase [Clostridium cellulovorans 743B]
Length = 149
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 62/107 (57%), Gaps = 6/107 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY DG+GL+APQVGI ++ V + GEG IV +NP + + + EGC
Sbjct: 35 MIDTMYDADGVGLAAPQVGILKKIFVIDI----GEGP-IVFINPEILETEGSYVD-SEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG A+VERP VK+ A + NG F + +L AR HE DHL
Sbjct: 89 LSIPGESAEVERPYKVKVKALNENGEEFILEGEELLARAICHENDHL 135
>gi|421873663|ref|ZP_16305275.1| peptide deformylase [Brevibacillus laterosporus GI-9]
gi|372457450|emb|CCF14824.1| peptide deformylase [Brevibacillus laterosporus GI-9]
Length = 159
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 64/108 (59%), Gaps = 6/108 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIP-YEEG 59
M D MY +G+G++APQVGI+ ++ V + E +NP + ++S + Y EG
Sbjct: 35 MKDTMYAANGVGIAAPQVGISKRVFVMDCGDFYVEA-----INPEIIEFSGEQFENYPEG 89
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS PG+H DV R VK+ A+D +G + + + DL AR QHE DHL
Sbjct: 90 CLSIPGLHGDVRRHMVVKMRAQDRDGNFYELEVDDLEARCIQHELDHL 137
>gi|404370885|ref|ZP_10976201.1| peptide deformylase [Clostridium sp. 7_2_43FAA]
gi|226912992|gb|EEH98193.1| peptide deformylase [Clostridium sp. 7_2_43FAA]
Length = 147
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 63/107 (58%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY+ DG+GL+APQVGI ++ V + + G V +NP + + S + EEGC
Sbjct: 35 MADTMYEADGVGLAAPQVGILQRIFVIDIYDDYGLR---VFINPEILEVSGSQLG-EEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG ADVERP VK+ A + G F + ++L AR HE DHL
Sbjct: 91 LSVPGEVADVERPNYVKVKALNEKGEEFVLEATELLARAILHENDHL 137
>gi|376296768|ref|YP_005167998.1| peptide deformylase [Desulfovibrio desulfuricans ND132]
gi|323459330|gb|EGB15195.1| peptide deformylase [Desulfovibrio desulfuricans ND132]
Length = 165
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY++DG+GL+APQV +++L+ + G + G+ VL+NP + + + + +EGC
Sbjct: 34 MVQTMYESDGVGLAAPQVNQSIRLICVDQTGPKERGDLRVLINPEIVECDGE-VESDEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112
LS P ++ V R E VK+ A + +G V L A + QHE DHL+ L
Sbjct: 93 LSCPELNLKVRRKERVKVKALNRSGKEICVETGGLLAIILQHEIDHLEGVTL 144
>gi|409399293|ref|ZP_11249612.1| peptide deformylase [Acidocella sp. MX-AZ02]
gi|409131533|gb|EKN01233.1| peptide deformylase [Acidocella sp. MX-AZ02]
Length = 177
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 63/107 (58%), Gaps = 1/107 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MYK GIGL+A Q+ ++++V + V + E + L+NP + S+++ EEGC
Sbjct: 43 MFATMYKAPGIGLAANQINSLLRVIVID-VAPKDEPAPLALINPEIIAKSDELATQEEGC 101
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P ++A++ RP VK+ +D+ G + + L + QHE DHL
Sbjct: 102 LSIPDLYAEITRPARVKVRYQDLQGVKQEIEAEGLLSACLQHEIDHL 148
>gi|86356069|ref|YP_467961.1| peptide deformylase [Rhizobium etli CFN 42]
gi|86280171|gb|ABC89234.1| peptide deformylase protein [Rhizobium etli CFN 42]
Length = 171
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 59/107 (55%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E + V +NP + K S+ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRMLVIDVSREGEEKQPQVFINPEIVKSSDDRSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP +V + D G V L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPATVSVKYLDREGKEQMVEADGLLATCLQHEIDHL 141
>gi|319407942|emb|CBI81596.1| polypeptide deformylase [Bartonella schoenbuchensis R1]
Length = 174
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 61/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QVG+ ++++V + +V++NP + S++ Y+EGC
Sbjct: 33 MLETMYHAQGIGLAAIQVGVPLRMLVIDIAENNTPKNPLVVINPEILWLSDERNIYKEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A VERP+ +++ D G + + DL A QHE DHL
Sbjct: 93 LSIPEYYAQVERPKRLRVRYSDREGKQTEIEADDLLATCLQHEIDHL 139
>gi|114568993|ref|YP_755673.1| peptide deformylase [Maricaulis maris MCS10]
gi|122316781|sp|Q0ASK2.1|DEF_MARMM RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|114339455|gb|ABI64735.1| peptide deformylase [Maricaulis maris MCS10]
Length = 174
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 61/108 (56%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+A QVG+ +++V + G E + VNP ++ S+ + PYEEGC
Sbjct: 35 MLQTMYAADGIGLAAIQVGVPKRVIVMDLAGSDEEAKPRYFVNPVLSDPSDTLKPYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS P ++ ++ERP+ + I D +G + A QHE DHL+
Sbjct: 95 LSVPTVYDEIERPDRIHIQYLDYDGNECEEIAEGMFAVCIQHEMDHLE 142
>gi|229587596|ref|YP_002869715.1| peptide deformylase [Pseudomonas fluorescens SBW25]
gi|388466634|ref|ZP_10140844.1| peptide deformylase [Pseudomonas synxantha BG33R]
gi|229359462|emb|CAY46303.1| peptide deformylase [Pseudomonas fluorescens SBW25]
gi|388010214|gb|EIK71401.1| peptide deformylase [Pseudomonas synxantha BG33R]
Length = 168
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++++++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHLRVVVMDLSEDRSEPR--VYINPEFEPLTDEMGEYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + +VERP VKI A D +G F + L A QHE DHL
Sbjct: 93 LSVPEFYENVERPLRVKIKALDRDGKPFELIAEGLLAVCIQHECDHL 139
>gi|254251081|ref|ZP_04944399.1| N-formylmethionyl-tRNA deformylase [Burkholderia dolosa AUO158]
gi|124893690|gb|EAY67570.1| N-formylmethionyl-tRNA deformylase [Burkholderia dolosa AUO158]
Length = 167
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 66/113 (58%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QV ++ +++V + E+ E +NP + S+ YEEGC
Sbjct: 35 MAETMYAAPGIGLAATQVDVHERVIVIDVSEEKNELR--AFINPEIVWSSDAKQVYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LS PGI+ +VERP+ V++ A + NG F + L A QHE DHL +VFV
Sbjct: 93 LSVPGIYDEVERPDRVRVRALNENGETFELDCEGLLAVCIQHEMDHLMGRVFV 145
>gi|332525408|ref|ZP_08401568.1| peptide deformylase [Rubrivivax benzoatilyticus JA2]
gi|332108677|gb|EGJ09901.1| peptide deformylase [Rubrivivax benzoatilyticus JA2]
Length = 172
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 67/113 (59%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+++G+GL+A QV ++ +L V + E + +V VNP++ S +++ +EEGC
Sbjct: 35 MLETMYESEGVGLAATQVDVHERLFVMDTSPEHDQP--MVFVNPQIVARSEELVIWEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LS P + V R V + A D GA F ++L L A QHE DHL +VFV
Sbjct: 93 LSVPQVWDKVTRNARVTVRALDREGAEFEIALDGLAAVCAQHEIDHLDGKVFV 145
>gi|385799657|ref|YP_005836061.1| peptide deformylase [Halanaerobium praevalens DSM 2228]
gi|309389021|gb|ADO76901.1| peptide deformylase [Halanaerobium praevalens DSM 2228]
Length = 150
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 61/107 (57%), Gaps = 5/107 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY DG+GL+APQ+G+ ++ V + EG +++L+NP + + K I EEGC
Sbjct: 35 MFETMYAEDGVGLAAPQIGMLKRIAVVDI----REGNKVILINPEIIEKEGKAI-MEEGC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG DV R E +K+ + + G + AR QHE DHL
Sbjct: 90 LSIPGETGDVIRAEKIKVKSLNRKGKEVTFLAEGFEARAIQHEIDHL 136
>gi|262089743|gb|ACY24837.1| Def peptide deformylase [uncultured organism]
Length = 169
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY G+GL+A Q+ ++ +++V + V E + + +V +NP V + + Y+EGC
Sbjct: 35 MFETMYDAPGVGLAASQINVHERIVVID-VSE-DKSQPMVFINPEVTVLDSDLHEYDEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + VERPE + + A D +G F++ L A QHE DHL
Sbjct: 93 LSVPGFYETVERPEHISVTALDRDGKSFTIKPEGLLAVCIQHELDHL 139
>gi|440738507|ref|ZP_20918037.1| peptide deformylase [Pseudomonas fluorescens BRIP34879]
gi|447919231|ref|YP_007399799.1| peptide deformylase [Pseudomonas poae RE*1-1-14]
gi|440380963|gb|ELQ17511.1| peptide deformylase [Pseudomonas fluorescens BRIP34879]
gi|445203094|gb|AGE28303.1| peptide deformylase [Pseudomonas poae RE*1-1-14]
Length = 168
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++++++V + +R E + V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHLRVVVMDLSEDRSEPK--VYINPEFEPLTDEMGEYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + VERP VKI A D +G F + L A QHE DHL
Sbjct: 93 LSVPEFYESVERPLRVKIKALDRDGKPFELIAEGLLAVCIQHECDHL 139
>gi|336324430|ref|YP_004604397.1| peptide deformylase [Flexistipes sinusarabici DSM 4947]
gi|336108011|gb|AEI15829.1| Peptide deformylase [Flexistipes sinusarabici DSM 4947]
Length = 169
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 62/107 (57%), Gaps = 1/107 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+APQVGI+ +L+V + E + L+NP V +Y + EEGC
Sbjct: 34 MAETMYNAPGVGLAAPQVGIDKRLVVMDITAEDEPPKLEKLINPEVLEYEGEQTG-EEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG +ADV+R E ++ D NG + L ARV QHE DHL
Sbjct: 93 LSLPGEYADVKRAEWIRYKYIDENGDEHLQEATGLRARVIQHEVDHL 139
>gi|315646177|ref|ZP_07899297.1| peptide deformylase [Paenibacillus vortex V453]
gi|315278376|gb|EFU41692.1| peptide deformylase [Paenibacillus vortex V453]
Length = 164
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 60/107 (56%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY DG+GL+APQVGI +L+V + E G I ++NP + + + EGC
Sbjct: 35 MADTMYDADGVGLAAPQVGILKRLIVIDAGDEHGL---IKMINPEIVESEGEQFG-PEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + DV R E V + D G V+ + L AR FQHE DHL
Sbjct: 91 LSIPGWNGDVRRAEKVTVKGLDREGNELIVTGTGLLARAFQHEIDHL 137
>gi|228470000|ref|ZP_04054916.1| peptide deformylase [Porphyromonas uenonis 60-3]
gi|228308381|gb|EEK17219.1| peptide deformylase [Porphyromonas uenonis 60-3]
Length = 188
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 63/112 (56%), Gaps = 5/112 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-----IVLVNPRVNKYSNKMIP 55
M+ MY++DGIGL+APQ+G N++L V + E E +V++N + S
Sbjct: 36 MWQTMYESDGIGLAAPQIGRNIRLQVIDATPLEDEYPECATLKLVMINAHMQSLSEDTCS 95
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
EGCLS PGI+ V RP+S+ +D + + LS ARV QHE+DHL
Sbjct: 96 EAEGCLSLPGINERVVRPKSIVVDYMNEQFEPQRLELSGYAARVVQHEYDHL 147
>gi|409422323|ref|ZP_11259426.1| peptide deformylase [Pseudomonas sp. HYS]
Length = 168
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A Q+ ++ +++V + +R E V +NP + +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQINVHKRIVVMDLSEDRSEPR--VFINPELEMLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP VK+ A D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPIRVKVKALDRDGKPYELVAEGLLAVCIQHECDHL 139
>gi|189485012|ref|YP_001955953.1| peptide deformylase [uncultured Termite group 1 bacterium phylotype
Rs-D17]
gi|238058216|sp|B1GZ10.1|DEF_UNCTG RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|170286971|dbj|BAG13492.1| peptide deformylase [uncultured Termite group 1 bacterium phylotype
Rs-D17]
Length = 168
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 62/107 (57%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+APQVGI ++ V + + + IV++NP + NK I EEGC
Sbjct: 35 MLETMYSASGVGLAAPQVGILLRFCVIDV--DPNKKSPIVMINPEIISGENK-ITAEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFPG + +V R E++ D+NG R + + A+ QHE DHL
Sbjct: 92 LSFPGFYGNVNRFENIIAGYTDLNGNRQEIKAQNFLAKALQHEIDHL 138
>gi|261823200|ref|YP_003261306.1| peptide deformylase [Pectobacterium wasabiae WPP163]
gi|261607213|gb|ACX89699.1| peptide deformylase [Pectobacterium wasabiae WPP163]
Length = 170
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 64/107 (59%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+A QV I+ +++V + ER + +VL+NP + + S + EEGC
Sbjct: 35 MFDTMYEEEGIGLAATQVDIHQRIIVIDVSEERDQ--RLVLINPELIEKSGET-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P A V R E VK+ A D G F + S+L A QHE DHL
Sbjct: 92 LSIPETRALVPRAEHVKVRALDREGKVFELEASELLAICIQHEMDHL 138
>gi|430001987|emb|CCF17767.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Rhizobium sp.]
Length = 170
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 62/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +L+V + E + + +NP++ S++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRLLVIDVSKEDEDKAPQLFINPQIVASSDERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP +V +D D G + ++ L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPAAVTVDYIDREGKQQTLQADGLLATCLQHEIDHL 141
>gi|308051095|ref|YP_003914661.1| peptide deformylase [Ferrimonas balearica DSM 9799]
gi|307633285|gb|ADN77587.1| peptide deformylase [Ferrimonas balearica DSM 9799]
Length = 175
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVF--NPVGERGEGEE---IVLVNPRVNKYSNKMIP 55
M M G+G++APQV ++LM+ P + + +VL+NP + S +++
Sbjct: 36 MLVTMEAAGGVGIAAPQVFEPLRLMIIASRPNARYPDAPQMDPVVLINPEILNTSGELVS 95
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
+ EGCLS PGI V RP++V++ D G +SLS PAR+F HEFDHL+
Sbjct: 96 FVEGCLSVPGIRGTVRRPDNVEVRYLDTQGQPQQLSLSGFPARIFLHEFDHLE 148
>gi|399518641|ref|ZP_10759595.1| peptide deformylase [Pseudomonas pseudoalcaligenes CECT 5344]
gi|399113135|emb|CCH36153.1| peptide deformylase [Pseudomonas pseudoalcaligenes CECT 5344]
Length = 168
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++ +++V + ++ E V +NP +++M Y+EGC
Sbjct: 35 MFETMYDAPGIGLAATQVNVHKRVVVMDLSEDKSEPR--VFINPEFEPLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ VKI A D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVKIKALDRDGQPYELIAEGLLAVCIQHECDHL 139
>gi|395783639|ref|ZP_10463488.1| peptide deformylase [Bartonella melophagi K-2C]
gi|395425761|gb|EJF91921.1| peptide deformylase [Bartonella melophagi K-2C]
Length = 174
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 61/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QVG+ ++++V + +V++NP + S++ Y+EGC
Sbjct: 33 MLETMYHAQGIGLAAIQVGVPLRMLVIDIAENNTPKNPLVVINPEILWLSDERNIYKEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A VERP+ +++ D G + + DL A QHE DHL
Sbjct: 93 LSIPEYYAQVERPKRLRVRYSDREGKQTEIEADDLLATCLQHEIDHL 139
>gi|319404989|emb|CBI78592.1| polypeptide deformylase [Bartonella sp. AR 15-3]
Length = 171
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 65/111 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+A QVGI ++++V + + +V++NP + S++ Y EGC
Sbjct: 35 MLETMYNAQGVGLAAVQVGIPLRMLVVDISPKDAPKNSLVVINPEILWISDERSVYREGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQVFV 111
LS P A+VERP+ ++I ++ G + + +DL A QHE DHL ++
Sbjct: 95 LSIPEYFAEVERPKCLRISYKNREGKQEEIEANDLLATCLQHEIDHLNGYL 145
>gi|260432735|ref|ZP_05786706.1| peptide deformylase [Silicibacter lacuscaerulensis ITI-1157]
gi|260416563|gb|EEX09822.1| peptide deformylase [Silicibacter lacuscaerulensis ITI-1157]
Length = 172
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQ+G+ +L+V + V E G +V+ NP + S++ YEEG
Sbjct: 34 MLETMYDAPGIGLAAPQIGVLERLIVLDCVKEEGATPRPLVMFNPEIISASDETSVYEEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P A+V RP V++ D NG + L A QHE DHL
Sbjct: 94 CLSIPDQFAEVTRPAEVEVAWMDQNGKAQRETFDGLWATCVQHEIDHL 141
>gi|349610696|ref|ZP_08890029.1| peptide deformylase [Neisseria sp. GT4A_CT1]
gi|348609572|gb|EGY59308.1| peptide deformylase [Neisseria sp. GT4A_CT1]
Length = 167
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 68/113 (60%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E +V +NP + + + YEEGC
Sbjct: 35 MFETMYEARGIGLAATQVDVHERVVVMDLTEDRSEP--LVFINPVIIEKDGET-TYEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PGI+ V R E VK++A + G +F++ L A QHE DHL VFV
Sbjct: 92 LSVPGIYDTVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFV 144
>gi|421750133|ref|ZP_16187425.1| peptide deformylase [Cupriavidus necator HPC(L)]
gi|409770869|gb|EKN53367.1| peptide deformylase [Cupriavidus necator HPC(L)]
Length = 168
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 66/113 (58%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ GIGL+A QV ++ Q++V + R E V +NP + S+ +EEGC
Sbjct: 35 MAETMYEAPGIGLAATQVDVHEQVIVIDISETRDELR--VFINPEIVWASDNRKVWEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LS P ++ VERP+ V++ A + NG F + DL A QHE DHL +VFV
Sbjct: 93 LSVPEVYDRVERPDRVRVRALNENGETFELEADDLLAVCIQHEMDHLKGKVFV 145
>gi|388455536|ref|ZP_10137831.1| polypeptide deformylase [Fluoribacter dumoffii Tex-KL]
Length = 169
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 63/107 (58%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY G+GL+APQ+G+ ++L V + G++ ++V++NP + + +EEGC
Sbjct: 35 MFETMYDARGVGLAAPQIGVGLRLSVIDIEGDKQN--QLVIINPEIVTAEGEK-KFEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + V R E V + A D NG F ++ L A QHE DH+
Sbjct: 92 LSVPGAYDTVIRAEKVTVKALDRNGKPFEINAEGLLAECLQHEIDHM 138
>gi|311109268|ref|YP_003982121.1| peptide deformylase 2 [Achromobacter xylosoxidans A8]
gi|310763957|gb|ADP19406.1| peptide deformylase 2 [Achromobacter xylosoxidans A8]
Length = 170
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 67/113 (59%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+A QV ++ +++V + V E + +VL+NP + +S+ YEEGC
Sbjct: 35 MAETMYDAPGVGLAATQVDVHERVVVID-VSE-DSNQLLVLINPEITWHSDDYKIYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PG++ DVER ++ A D++G F L A QHE DHL+ VFV
Sbjct: 93 LSVPGVYDDVERASRIRCKALDVDGKPFEFEADGLLAVCVQHELDHLEGKVFV 145
>gi|255282544|ref|ZP_05347099.1| peptide deformylase [Bryantella formatexigens DSM 14469]
gi|255266837|gb|EET60042.1| peptide deformylase [Marvinbryantia formatexigens DSM 14469]
Length = 162
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 5/108 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ G+GL+APQVGI +++V + GE E VL+NP + + S + YE GC
Sbjct: 35 MFDTMYEEGGVGLAAPQVGILKRIVVIDTTGE----EPHVLINPVIEETSGEQRGYE-GC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG V RP V++ A D N + + ++L AR HE DHL+
Sbjct: 90 LSLPGKSGIVTRPNYVRVRAFDENMQEYVLEGTELLARAICHECDHLE 137
>gi|436840586|ref|YP_007324964.1| peptide deformylase [Desulfovibrio hydrothermalis AM13 = DSM 14728]
gi|432169492|emb|CCO22860.1| peptide deformylase [Desulfovibrio hydrothermalis AM13 = DSM 14728]
Length = 169
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 59/107 (55%), Gaps = 1/107 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY DG+GL+APQVG+ +L+V +P G + V++NP + K + EE C
Sbjct: 34 MIETMYDDDGVGLAAPQVGLQKRLIVIDPSGPKERTALQVIINPEIIASEGK-VDSEESC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P ++R E V + +DI+G + + A V QHE DHL
Sbjct: 93 LSCPSFRCVIKRSEKVTVTGQDIDGNDIKIEADEFLAIVLQHEIDHL 139
>gi|300313962|ref|YP_003778054.1| polypeptide deformylase [Herbaspirillum seropedicae SmR1]
gi|300076747|gb|ADJ66146.1| polypeptide deformylase protein [Herbaspirillum seropedicae SmR1]
Length = 172
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 67/113 (59%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+A QV ++ Q++V + V + G+ + V +NP + S Y+EGC
Sbjct: 35 MAETMYAAPGVGLAATQVDVHEQVVVID-VSDDGKNLQ-VFINPEIVWASEDKRVYDEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LS PGI+ VERP VK+ A D +G F V +L A QHE DHL +VFV
Sbjct: 93 LSVPGIYDGVERPARVKVRAFDADGKAFEVDADELLAVCIQHEMDHLKGKVFV 145
>gi|148651859|ref|YP_001278952.1| peptide deformylase [Psychrobacter sp. PRwf-1]
gi|172048436|sp|A5WBG1.1|DEF_PSYWF RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|148570943|gb|ABQ93002.1| peptide deformylase [Psychrobacter sp. PRwf-1]
Length = 176
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QV ++QL+V + + E + V +NP+V PYEEGC
Sbjct: 35 MIETMYDAKGIGLAATQVDRHIQLIVMD-LSENNDSPR-VFINPKVTPLVEDKKPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P ++ V+RP VKI+A D +G F L A QHE DHL
Sbjct: 93 LSVPDVYDSVDRPVKVKIEALDADGNAFEEIAEGLLAVCIQHEMDHL 139
>gi|354582477|ref|ZP_09001379.1| peptide deformylase [Paenibacillus lactis 154]
gi|353199876|gb|EHB65338.1| peptide deformylase [Paenibacillus lactis 154]
Length = 164
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 60/107 (56%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY DG+GL+APQVGI +L+V + E G I ++NP + + + EGC
Sbjct: 35 MADTMYDADGVGLAAPQVGILKRLIVVDAGDEHGL---IKMINPEIIESEGEQFG-PEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + DV R E V + D G V+ + L AR FQHE DHL
Sbjct: 91 LSIPGWNGDVRRAEKVTVKGLDREGNELVVTGTGLLARAFQHEIDHL 137
>gi|229918580|ref|YP_002887226.1| methionyl-tRNA formyltransferase [Exiguobacterium sp. AT1b]
gi|229470009|gb|ACQ71781.1| methionyl-tRNA formyltransferase [Exiguobacterium sp. AT1b]
Length = 466
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 64/107 (59%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
+FD MY+ DG+G++APQV +N +L V + E G +VL+NP + + S + + E GC
Sbjct: 33 LFDTMYEYDGVGVAAPQVNLNQRLAVVHTDDETGP---LVLINPEIIETSGREVGLE-GC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG VER ES+ + +D+ G ++ S AR QHE DHL
Sbjct: 89 LSIPGEFGFVERHESIVVKNQDVKGRTHTIQASGFFARAIQHEMDHL 135
>gi|399991312|ref|YP_006571552.1| peptide deformylase Def [Phaeobacter gallaeciensis DSM 17395 = CIP
105210]
gi|400755849|ref|YP_006564217.1| peptide deformylase Def [Phaeobacter gallaeciensis 2.10]
gi|398655002|gb|AFO88972.1| peptide deformylase Def [Phaeobacter gallaeciensis 2.10]
gi|398655867|gb|AFO89833.1| peptide deformylase Def [Phaeobacter gallaeciensis DSM 17395 = CIP
105210]
Length = 172
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGER-GEGEEIVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQ+G+ +L+V + V E G +V+ NP V S++ YEEG
Sbjct: 34 MLETMYAAPGIGLAAPQIGVLDRLIVLDCVKEEDGPARPLVMFNPEVVASSDETNVYEEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P +A+V RP+ V+++ D +G + L A QHE DHL
Sbjct: 94 CLSIPDQYAEVTRPKVVEVEWMDRDGNAQRETFDGLWATCVQHEIDHL 141
>gi|163867376|ref|YP_001608570.1| peptide deformylase [Bartonella tribocorum CIP 105476]
gi|189083066|sp|A9ILK4.1|DEF_BART1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|161017017|emb|CAK00575.1| polypeptide deformylase [Bartonella tribocorum CIP 105476]
Length = 178
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVG--ERGEGEEIVLVNPRVNKYSNKMIPYEE 58
M + MY GIGL+A Q+GI ++++V + G E + + +V++NP + S++ Y+E
Sbjct: 35 MLETMYHAKGIGLAAIQIGIPLRMLVIDVSGNAEDTQKKPLVIINPEILWLSDERNVYKE 94
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
GCLS P A+VERP+ +++ ++ G + + DL A QHE DHL
Sbjct: 95 GCLSIPDYFAEVERPKRLRVRYQNREGKQKEIEADDLLATCLQHEIDHL 143
>gi|393771423|ref|ZP_10359895.1| peptide deformylase [Novosphingobium sp. Rr 2-17]
gi|392723187|gb|EIZ80580.1| peptide deformylase [Novosphingobium sp. Rr 2-17]
Length = 189
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 66/128 (51%), Gaps = 20/128 (15%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE--------------------IV 40
MF+ MY GIGL+A QVG+ ++++V + E E EE V
Sbjct: 35 MFETMYDAPGIGLAAIQVGVPLRVLVIDLQPEDDEAEEELCEAHGGHAHYHKPTKREPRV 94
Query: 41 LVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVF 100
+NP + S I Y+EGCLS P I+ADVERP S++ +D++G + L A
Sbjct: 95 FINPEILDPSEDYIVYQEGCLSVPEIYADVERPASIRARWQDLDGNAHEEDMEGLMAICL 154
Query: 101 QHEFDHLQ 108
QHE DHL+
Sbjct: 155 QHEMDHLE 162
>gi|385873665|gb|AFI92185.1| Peptide deformylase [Pectobacterium sp. SCC3193]
Length = 170
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 64/107 (59%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+A QV I+ +++V + ER + +VL+NP + + S + EEGC
Sbjct: 35 MFDTMYEEEGIGLAATQVDIHQRIIVIDVSEERDQ--RMVLINPELIEKSGET-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P A V R E VK+ A D G F + S+L A QHE DHL
Sbjct: 92 LSIPETRALVPRAEHVKVRALDREGKVFELEASELLAICIQHEMDHL 138
>gi|253690150|ref|YP_003019340.1| peptide deformylase [Pectobacterium carotovorum subsp. carotovorum
PC1]
gi|259645184|sp|C6DFR5.1|DEF_PECCP RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|251756728|gb|ACT14804.1| peptide deformylase [Pectobacterium carotovorum subsp. carotovorum
PC1]
Length = 170
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 63/107 (58%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+A QV I+ +++V + ER + +VL+NP + + S EEGC
Sbjct: 35 MFDTMYEEEGIGLAATQVDIHQRIIVIDVSEERDQ--RLVLINPELIEKSGDT-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P A V R E VK+ A D G F + S+L A QHE DHL
Sbjct: 92 LSIPETRALVPRAEHVKVRALDREGKTFELEASELLAICIQHEMDHL 138
>gi|421080412|ref|ZP_15541345.1| Peptide deformylase [Pectobacterium wasabiae CFBP 3304]
gi|401704844|gb|EJS95034.1| Peptide deformylase [Pectobacterium wasabiae CFBP 3304]
Length = 170
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 64/107 (59%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+A QV I+ +++V + ER + +VL+NP + + S + EEGC
Sbjct: 35 MFDTMYEEEGIGLAATQVDIHQRIIVIDVSEERDQ--RLVLINPELIEKSGET-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P A V R E VK+ A D G F + S+L A QHE DHL
Sbjct: 92 LSIPETRALVPRAEHVKVRALDREGKVFELEASELLAICIQHEMDHL 138
>gi|335040153|ref|ZP_08533289.1| Peptide deformylase [Caldalkalibacillus thermarum TA2.A1]
gi|334179978|gb|EGL82607.1| Peptide deformylase [Caldalkalibacillus thermarum TA2.A1]
Length = 159
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 64/108 (59%), Gaps = 6/108 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRV-NKYSNKMIPYEEG 59
M + MY +G+GL+APQVGI+ ++ V + E G E +NP + K ++ P EG
Sbjct: 35 MAETMYAAEGVGLAAPQVGISKRVFVVDVGDENGLLE---FINPEIIVKEGEQIGP--EG 89
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS PG++ +V R + +K+ A D NG F + DL AR QHE DHL
Sbjct: 90 CLSIPGVNGEVRRAQKIKVRAIDRNGETFELEAEDLLARAIQHELDHL 137
>gi|392310462|ref|ZP_10272996.1| peptide deformylase [Pseudoalteromonas citrea NCIMB 1889]
Length = 169
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 62/107 (57%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +GIGL+A QV I+ +++V + ER E +VL+NP + + + EEGC
Sbjct: 35 MKETMYDENGIGLAATQVNIHQRIVVIDVSEERNEA--MVLINPEIIEKEGSTVS-EEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A V+R ESVK+ A D NG F L A QHE DHL
Sbjct: 92 LSVPYSYAKVDRAESVKVKALDENGKEFQYEADGLLAICTQHELDHL 138
>gi|384261730|ref|YP_005416916.1| Peptide deformylase [Rhodospirillum photometricum DSM 122]
gi|378402830|emb|CCG07946.1| Peptide deformylase [Rhodospirillum photometricum DSM 122]
Length = 183
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 57/107 (53%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+APQVG+ +++V +P E + L NP + S + PYEEGC
Sbjct: 35 MVETMYAAPGIGLAAPQVGVLKRVIVVDPAREGEAPRPMRLANPEILWASEETKPYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + V RP VK+ D G + L A V QHE DHL
Sbjct: 95 LSVPEQYDTVVRPAQVKVAYLDETGTAREIEADGLLAVVLQHEIDHL 141
>gi|365922494|ref|ZP_09446693.1| peptide deformylase [Cardiobacterium valvarum F0432]
gi|364573092|gb|EHM50609.1| peptide deformylase [Cardiobacterium valvarum F0432]
Length = 186
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 13/120 (10%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGE-------------EIVLVNPRVN 47
MF MY+ GIGL+A QV I+ +++V + +R E E ++L+NP +
Sbjct: 35 MFATMYEAHGIGLAATQVNIHRRIIVMDVPEKREEDESNDIPPETPVPHTRLILINPEII 94
Query: 48 KYSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
+S + ++EGCLS PG ADV+RP++++ D+ GAR L QHE DHL
Sbjct: 95 SHSAETAVWQEGCLSLPGQFADVKRPKTIRYAYYDLGGARCEAEAEGLLGVCIQHEIDHL 154
>gi|451941377|ref|YP_007462014.1| polypeptide deformylase [Bartonella vinsonii subsp. berkhoffii str.
Winnie]
gi|451900764|gb|AGF75226.1| polypeptide deformylase [Bartonella vinsonii subsp. berkhoffii str.
Winnie]
Length = 176
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 62/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+A Q+GI ++++V + G +V++NP + S + Y+EGC
Sbjct: 35 MLETMYHAKGVGLAAIQIGIPLRMLVIDVSGNDDAKNPLVIINPEILWLSEERSIYKEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP+ + + +D G + + +L A QHE DHL
Sbjct: 95 LSIPEYYAEVERPKRLCVRYQDHEGKQTEIEADNLLATCLQHEIDHL 141
>gi|409727904|ref|ZP_11270873.1| peptide deformylase Def, partial [Halococcus hamelinensis 100A6]
Length = 131
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGER-GEGEEIVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQ+G+ +L+V + V E G +V+ NP V S++ YEEG
Sbjct: 3 MLETMYAAPGIGLAAPQIGVLDRLIVLDCVKEEDGPARPLVMFNPEVVASSDEANVYEEG 62
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P +A+V RP+ V+++ D +G + L A QHE DHL
Sbjct: 63 CLSIPDQYAEVTRPKVVEVEWMDRDGNAQRETFDGLWATCVQHEIDHL 110
>gi|374850911|dbj|BAL53887.1| peptide deformylase [uncultured Acidobacteria bacterium]
gi|374851663|dbj|BAL54616.1| peptide deformylase [uncultured Acidobacteria bacterium]
Length = 169
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 63/107 (58%), Gaps = 1/107 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY G+GL+APQ+G+N +L V + G R E +VL+NP + + + EEGC
Sbjct: 34 MFETMYAARGVGLAAPQIGVNRRLFVMDCSGGRDAAERVVLINPEILA-TEGEVVEEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++A V RP V D++ ++ ++ L AR HE DHL
Sbjct: 93 LSLPGLYAKVARPYRVLARGLDLDQREITLEVTGLAARCVCHEVDHL 139
>gi|302671348|ref|YP_003831308.1| polypeptide deformylase [Butyrivibrio proteoclasticus B316]
gi|302395821|gb|ADL34726.1| polypeptide deformylase Def1 [Butyrivibrio proteoclasticus B316]
Length = 163
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 62/107 (57%), Gaps = 5/107 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ +G+GL+APQVGI ++ V + GE + +V +NP + + S + YE GC
Sbjct: 35 MLETMYEANGVGLAAPQVGILKRIFVIDVTGE----DPMVFINPEILETSGEQTGYE-GC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG V R VK A D++G F + +L AR QHE DHL
Sbjct: 90 LSVPGKSGIVTRANYVKAKATDLDGNEFIIEGEELLARAIQHENDHL 136
>gi|312958120|ref|ZP_07772643.1| peptide deformylase [Pseudomonas fluorescens WH6]
gi|311287551|gb|EFQ66109.1| peptide deformylase [Pseudomonas fluorescens WH6]
Length = 212
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++++++V + +R E V +NP +++M Y+EGC
Sbjct: 79 MFETMYEAPGIGLAATQVNVHLRVVVMDLSEDRSEPR--VYINPEFEPLTDEMGEYQEGC 136
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + +VERP VKI A D +G F + L A QHE DHL
Sbjct: 137 LSVPEFYENVERPLRVKIKALDRDGKPFEMIAEGLLAVCIQHECDHL 183
>gi|304388911|ref|ZP_07370958.1| peptide deformylase [Neisseria meningitidis ATCC 13091]
gi|427826210|ref|ZP_18993269.1| peptide deformylase [Neisseria meningitidis H44/76]
gi|304337045|gb|EFM03232.1| peptide deformylase [Neisseria meningitidis ATCC 13091]
gi|316985956|gb|EFV64895.1| peptide deformylase [Neisseria meningitidis H44/76]
Length = 181
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 68/113 (60%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY++ GIGL+A QV ++ +++V + +R E V +NP + + + YEEGC
Sbjct: 49 MFETMYESRGIGLAATQVDVHERVVVMDLTEDRSEPR--VFINPVIVEKDGE-TTYEEGC 105
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PGI+ V R E VK++A + G +F++ L A QHE DHL VFV
Sbjct: 106 LSVPGIYDTVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFV 158
>gi|163757845|ref|ZP_02164934.1| peptide deformylase [Hoeflea phototrophica DFL-43]
gi|162285347|gb|EDQ35629.1| peptide deformylase [Hoeflea phototrophica DFL-43]
Length = 172
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 58/107 (54%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QVG+ +L+V + G+ V +NP V + + YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQVGVPRRLLVIDVAGKDEPKSPQVFINPEVVATGDGISVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +ADVERPE++ + +G + L A QHE DHL
Sbjct: 95 LSIPDYYADVERPETITVKYLGRDGKEHTTEADGLLATCLQHEIDHL 141
>gi|83309342|ref|YP_419606.1| N-formylmethionyl-tRNA deformylase [Magnetospirillum magneticum
AMB-1]
gi|82944183|dbj|BAE49047.1| N-formylmethionyl-tRNA deformylase [Magnetospirillum magneticum
AMB-1]
Length = 190
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 65/108 (60%), Gaps = 2/108 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
M D MY GIGL+APQ+G+ +++V + +G + E I +VNP + S++ YEEG
Sbjct: 55 MLDTMYHAPGIGLAAPQIGVLERVIVMD-IGRKEEDRAPIRMVNPEIVWASDEDNTYEEG 113
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P +++V RP SVK+ D GA+ + L A V QHE DHL
Sbjct: 114 CLSVPEHYSNVVRPASVKVRYLDETGAKQEILADGLLATVVQHEMDHL 161
>gi|334128611|ref|ZP_08502494.1| peptide deformylase [Centipeda periodontii DSM 2778]
gi|333386702|gb|EGK57912.1| peptide deformylase [Centipeda periodontii DSM 2778]
Length = 156
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 62/107 (57%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY DG+GL+APQVG +++++V + E G E LVNP + ++ EGC
Sbjct: 35 MAETMYSADGVGLAAPQVGKSLRIVVIDVQDEHGLLE---LVNPVITTREGTVVD-SEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P ++ DVER E V ++ D R S++ L AR QHE DHL
Sbjct: 91 LSVPQVYGDVERAERVTVEYTDRRSRRRSLTAEGLLARCIQHECDHL 137
>gi|163744871|ref|ZP_02152231.1| N-formylmethionyl tRNA deformylase [Oceanibulbus indolifex HEL-45]
gi|161381689|gb|EDQ06098.1| N-formylmethionyl tRNA deformylase [Oceanibulbus indolifex HEL-45]
Length = 165
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 57/107 (53%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G GL+ PQVG ++L V + + + + +V +NP + + + EGC
Sbjct: 35 MLETMYAAPGRGLAGPQVGAMLRLFVMDAGWKENKSDPLVCINPMFQEIGEERVTNTEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PGI D+ RP V++ +NG R+ S A + QHE DHL
Sbjct: 95 LSIPGISTDISRPSQVQMVWTGLNGGRYVQSFEGAAALIAQHEMDHL 141
>gi|383756315|ref|YP_005435300.1| peptide deformylase Def [Rubrivivax gelatinosus IL144]
gi|381376984|dbj|BAL93801.1| peptide deformylase Def [Rubrivivax gelatinosus IL144]
Length = 172
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 67/113 (59%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+++G+GL+A QV ++ +L V + E + +V +NP++ S +++ +EEGC
Sbjct: 35 MLETMYESEGVGLAATQVDVHERLFVMDTSPEHDQP--MVFINPQIVARSEELVIWEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LS P + V R V + A D GA F ++L L A QHE DHL +VFV
Sbjct: 93 LSVPQVWDKVTRNARVTVRALDREGAEFDIALDGLAAVCAQHEIDHLDGKVFV 145
>gi|50122919|ref|YP_052086.1| peptide deformylase [Pectobacterium atrosepticum SCRI1043]
gi|81693081|sp|Q6D002.1|DEF_ERWCT RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|49613445|emb|CAG76896.1| peptide deformylase [Pectobacterium atrosepticum SCRI1043]
Length = 169
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 63/107 (58%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+A QV I+ +++V + ER + +VL+NP + + S EEGC
Sbjct: 35 MFDTMYEEEGIGLAATQVDIHQRIIVIDVSEERDQ--RLVLINPELIEKSGDT-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P A V R E VK+ A D G F + S+L A QHE DHL
Sbjct: 92 LSIPETRALVPRAEHVKVRALDREGKAFELEASELLAICIQHEMDHL 138
>gi|386811558|ref|ZP_10098783.1| peptide deformylase [planctomycete KSU-1]
gi|386403828|dbj|GAB61664.1| peptide deformylase [planctomycete KSU-1]
Length = 170
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 65/107 (60%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M + +G+GL+APQVG +V+L + + R E + V +NP + + + ++ EEGC
Sbjct: 32 MMELMCQANGVGLAAPQVGWSVRLFIIDVNDSRCEDK--VFINPTIIEETGEL-SKEEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PGI + V R + +K A ++ G + + L AR +QHE DHL
Sbjct: 89 LSLPGIMSKVIRAQRIKARAYNLKGQKIEIEAEGLAARAWQHEIDHL 135
>gi|384172732|ref|YP_005554109.1| peptide deformylase [Arcobacter sp. L]
gi|345472342|dbj|BAK73792.1| peptide deformylase [Arcobacter sp. L]
Length = 177
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 66/112 (58%), Gaps = 5/112 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPV-GERGEG----EEIVLVNPRVNKYSNKMIP 55
M + + K++G+GL+APQ+ I+ Q+M+ + ER E++VL+NP++ K S
Sbjct: 37 MIETLKKSNGVGLAAPQIFISKQIMIISSKPNERYPNAPLMEDLVLINPKIIKTSKGKNK 96
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
EGCLS PGI A V R + + + + + ++ D AR+FQHE+DHL
Sbjct: 97 DWEGCLSIPGIRAKVPRYNKIVVKYKTLENEKKTIVFKDFIARIFQHEYDHL 148
>gi|443474080|ref|ZP_21064101.1| Peptide deformylase [Pseudomonas pseudoalcaligenes KF707]
gi|442905015|gb|ELS29930.1| Peptide deformylase [Pseudomonas pseudoalcaligenes KF707]
Length = 168
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++ +++V + ++ E V +NP + +M Y+EGC
Sbjct: 35 MFETMYAAPGIGLAATQVNVHKRVVVMDLSEDKSEPR--VFINPEFEPLTEEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ VKI A D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVKIKALDRDGQPYELIAEGLLAVCIQHECDHL 139
>gi|407474139|ref|YP_006788539.1| peptide deformylase Def [Clostridium acidurici 9a]
gi|407050647|gb|AFS78692.1| peptide deformylase Def [Clostridium acidurici 9a]
Length = 150
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 62/107 (57%), Gaps = 6/107 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MYK +G+GL+APQVGI +++V + GEG I ++NP + + I +E GC
Sbjct: 35 MIETMYKEEGVGLAAPQVGILKRVVVVDI----GEGP-ITMINPEILSEEGETIDFE-GC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG V RP VK+ DING ++ D AR F HE DHL
Sbjct: 89 LSVPGKRGKVNRPFKVKVKFTDINGEEKTLEGEDFLARAFCHEIDHL 135
>gi|227328917|ref|ZP_03832941.1| peptide deformylase [Pectobacterium carotovorum subsp. carotovorum
WPP14]
Length = 170
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 63/107 (58%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+A QV I+ +++V + ER + +VL+NP + + S EEGC
Sbjct: 35 MFDTMYEEEGIGLAATQVDIHQRIIVIDVSEERDQ--RLVLINPELIEKSGDT-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P A V R E VK+ A D G F + S+L A QHE DHL
Sbjct: 92 LSIPETRALVPRAEHVKVRALDREGKAFELEASELLAICIQHEMDHL 138
>gi|254780297|ref|YP_003064710.1| peptide deformylase [Candidatus Liberibacter asiaticus str. psy62]
gi|254039974|gb|ACT56770.1| peptide deformylase [Candidatus Liberibacter asiaticus str. psy62]
Length = 170
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 58/107 (54%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M +VMY TDGIGL+A Q+G+ +L+V + +V +NP++ +S+ Y+EGC
Sbjct: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P ADV+R + + D N + L A QHE DHL
Sbjct: 95 LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHL 141
>gi|110678658|ref|YP_681665.1| peptide deformylase [Roseobacter denitrificans OCh 114]
gi|109454774|gb|ABG30979.1| peptide deformylase [Roseobacter denitrificans OCh 114]
Length = 175
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQVGI +++V + + E G+ +++ NP V S++ YEEG
Sbjct: 37 MLETMYDAPGIGLAAPQVGILQRVVVMDCIKEPGDTPRPVIMFNPEVIATSDETSVYEEG 96
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P A+V RP V++ D +GA S + L A QHE DHL
Sbjct: 97 CLSIPEQFAEVTRPAEVEVRWMDRDGAAQSEVFTGLWATCAQHEIDHL 144
>gi|403060217|ref|YP_006648434.1| peptide deformylase [Pectobacterium carotovorum subsp. carotovorum
PCC21]
gi|402807543|gb|AFR05181.1| peptide deformylase [Pectobacterium carotovorum subsp. carotovorum
PCC21]
Length = 170
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 63/107 (58%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+A QV I+ +++V + ER + +VL+NP + + S EEGC
Sbjct: 35 MFDTMYEEEGIGLAATQVDIHQRIIVIDVSEERDQ--RLVLINPELIEKSGDT-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P A V R E VK+ A D G F + S+L A QHE DHL
Sbjct: 92 LSIPETRALVPRAEHVKVRALDREGKAFELEASELLAICIQHEMDHL 138
>gi|389783171|ref|ZP_10194665.1| peptide deformylase [Rhodanobacter spathiphylli B39]
gi|388435109|gb|EIL92027.1| peptide deformylase [Rhodanobacter spathiphylli B39]
Length = 169
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 69/113 (61%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +G+GL+A QV ++ +++V + ER + +VL+N R+ + + Y+EGC
Sbjct: 35 MLETMYAANGVGLAATQVNVHQRVLVADMSDERNQ--PLVLINARIVEKDGSQV-YQEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LSFPG++ADV R +V++ A+D +G + A QHE DHL+ VFV
Sbjct: 92 LSFPGLYADVTRALAVRVQAQDADGKDIVIEAEGPLAVCIQHELDHLEGKVFV 144
>gi|423452832|ref|ZP_17429685.1| peptide deformylase 1 [Bacillus cereus BAG5X1-1]
gi|423470081|ref|ZP_17446825.1| peptide deformylase 1 [Bacillus cereus BAG6O-2]
gi|401139391|gb|EJQ46953.1| peptide deformylase 1 [Bacillus cereus BAG5X1-1]
gi|402437333|gb|EJV69357.1| peptide deformylase 1 [Bacillus cereus BAG6O-2]
Length = 156
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 67/109 (61%), Gaps = 6/109 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRV-NKYSNKMIPYEEG 59
M + M DG+GL+APQVG+++Q+ V + + G+ I L+NP + K ++ P EG
Sbjct: 35 MHETMLIADGVGLAAPQVGVSLQVAVVDIGDDTGK---IELINPVILEKRGEQVGP--EG 89
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
CLSFPG++ +VER + +K+ A++ G F + D AR QHE DHL
Sbjct: 90 CLSFPGLYGEVERADYIKVRAQNRRGKIFLLEADDFLARAIQHEIDHLH 138
>gi|225075032|ref|ZP_03718231.1| hypothetical protein NEIFLAOT_00031 [Neisseria flavescens
NRL30031/H210]
gi|261380545|ref|ZP_05985118.1| peptide deformylase [Neisseria subflava NJ9703]
gi|319639522|ref|ZP_07994269.1| peptide deformylase [Neisseria mucosa C102]
gi|224953637|gb|EEG34846.1| hypothetical protein NEIFLAOT_00031 [Neisseria flavescens
NRL30031/H210]
gi|284796513|gb|EFC51860.1| peptide deformylase [Neisseria subflava NJ9703]
gi|317399093|gb|EFV79767.1| peptide deformylase [Neisseria mucosa C102]
Length = 167
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + + + YEEGC
Sbjct: 35 MFETMYEARGIGLAATQVDVHERIVVMDLTEDRSEPR--VFINPVIVEKDGET-TYEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PGI+ V R E VK++A + G +F++ L A QHE DHL VFV
Sbjct: 92 LSVPGIYDTVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFV 144
>gi|77024073|gb|ABA55507.1| chloroplast peptide deformylase [Isochrysis galbana]
Length = 200
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 1/80 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEG-EEIVLVNPRVNKYSNKMIPYEEG 59
MF +MY + G+GL+APQ+GIN +LMVFNP G++ + E+VL NPR+ + EEG
Sbjct: 115 MFAIMYASRGVGLAAPQLGINKRLMVFNPEGKKEKWMSEVVLCNPRIVERGAGKETDEEG 174
Query: 60 CLSFPGIHADVERPESVKID 79
CLSFPG ADV+R ++++
Sbjct: 175 CLSFPGFTADVDRAGWIQVE 194
>gi|389737496|ref|ZP_10190925.1| peptide deformylase [Rhodanobacter sp. 115]
gi|388434858|gb|EIL91786.1| peptide deformylase [Rhodanobacter sp. 115]
Length = 167
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M++ MY +G+GL+A QV ++ L+V + +R + + L+N + + + Y+EGC
Sbjct: 35 MYETMYAANGVGLAATQVNVHRHLLVIDMSEDRDQ--PLTLINAEILEKDGAQV-YQEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LSFPGI+ADV R VK+ A+D++G F A QHE DHL +VFV
Sbjct: 92 LSFPGIYADVTRALKVKVKAQDLDGKEFIYEAEGPLAVAVQHEMDHLAGKVFV 144
>gi|154247233|ref|YP_001418191.1| peptide deformylase [Xanthobacter autotrophicus Py2]
gi|154161318|gb|ABS68534.1| peptide deformylase [Xanthobacter autotrophicus Py2]
Length = 172
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 61/108 (56%), Gaps = 2/108 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
MFD MY GIGL+A QVG+ +++ + V GE ++ I L+NP + S + Y EG
Sbjct: 35 MFDTMYDAPGIGLAAIQVGVQRRVVTID-VAREGEAKKPIALINPEIIAASEETSVYAEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P + +VERP V + +DI G V+ L A QHE DHL
Sbjct: 94 CLSIPEYYEEVERPARVTVRFQDIEGQVREVAADGLFATCVQHEIDHL 141
>gi|15644409|ref|NP_229461.1| peptide deformylase [Thermotoga maritima MSB8]
gi|418045721|ref|ZP_12683816.1| peptide deformylase [Thermotoga maritima MSB8]
gi|3023626|sp|P96113.1|DEF_THEMA RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|4982236|gb|AAD36728.1|AE001808_3 polypeptide deformylase [Thermotoga maritima MSB8]
gi|1772608|emb|CAA71356.1| polypeptide deformylase [Thermotoga maritima]
gi|351676606|gb|EHA59759.1| peptide deformylase [Thermotoga maritima MSB8]
Length = 164
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 62/107 (57%), Gaps = 5/107 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY DG+GL+APQVGI+ + V + G G + ++NP + + + EEGC
Sbjct: 33 MIETMYHYDGVGLAAPQVGISQRFFVMDV----GNGP-VAVINPEILEIDPETEVAEEGC 87
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFP I ++ER + +K+ ++ G L ARVFQHEFDHL
Sbjct: 88 LSFPEIFVEIERSKRIKVKYQNTRGEYVEEELEGYAARVFQHEFDHL 134
>gi|409396477|ref|ZP_11247463.1| peptide deformylase [Pseudomonas sp. Chol1]
gi|409118958|gb|EKM95348.1| peptide deformylase [Pseudomonas sp. Chol1]
Length = 168
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + ++ E V +NP + +M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDKSEPR--VFINPEFEALTEEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ V++ A D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVRVKALDRDGQPYEIIAEGLLAVCIQHECDHL 139
>gi|241760428|ref|ZP_04758522.1| peptide deformylase [Neisseria flavescens SK114]
gi|241319097|gb|EER55590.1| peptide deformylase [Neisseria flavescens SK114]
Length = 167
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + + + YEEGC
Sbjct: 35 MFETMYEARGIGLAATQVDVHERIVVMDLTEDRSEPR--VFINPVIVEKDGET-TYEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PGI+ V R E VK++A + G +F++ L A QHE DHL VFV
Sbjct: 92 LSVPGIYDTVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFV 144
>gi|77359005|ref|YP_338580.1| peptide deformylase [Pseudoalteromonas haloplanktis TAC125]
gi|123587108|sp|Q3IDI2.1|DEF_PSEHT RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|76873916|emb|CAI85137.1| N-terminal methionine peptide deformylase [Pseudoalteromonas
haloplanktis TAC125]
Length = 167
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 64/108 (59%), Gaps = 3/108 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +GIGL+A QV I+ +++V + ER E +VL+NP++ K + EEGC
Sbjct: 35 MLETMYDENGIGLAATQVNIHQRIVVIDVSEERNEP--LVLINPQIIKKDGTTVS-EEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS P +A V+R E+V + A + G F + +L A QHE DHLQ
Sbjct: 92 LSVPNSYAKVDRAETVTVAALNEQGEEFVLDADELLAICIQHELDHLQ 139
>gi|15676038|ref|NP_273168.1| peptide deformylase [Neisseria meningitidis MC58]
gi|121633988|ref|YP_974233.1| peptide deformylase [Neisseria meningitidis FAM18]
gi|161870945|ref|YP_001600125.1| peptide deformylase [Neisseria meningitidis 053442]
gi|218767202|ref|YP_002341714.1| peptide deformylase [Neisseria meningitidis Z2491]
gi|254805844|ref|YP_003084065.1| peptide deformylase [Neisseria meningitidis alpha14]
gi|385323261|ref|YP_005877700.1| peptide deformylase (PDF; polypeptide deformylase) [Neisseria
meningitidis 8013]
gi|385327476|ref|YP_005881779.1| polypeptide deformylase [Neisseria meningitidis alpha710]
gi|385338993|ref|YP_005892866.1| peptide deformylase (PDF; polypeptide deformylase) [Neisseria
meningitidis WUE 2594]
gi|385339155|ref|YP_005893027.1| peptide deformylase [Neisseria meningitidis G2136]
gi|385342849|ref|YP_005896720.1| peptide deformylase [Neisseria meningitidis M01-240149]
gi|385850380|ref|YP_005896895.1| peptide deformylase [Neisseria meningitidis M04-240196]
gi|385852320|ref|YP_005898834.1| peptide deformylase [Neisseria meningitidis H44/76]
gi|385854288|ref|YP_005900801.1| peptide deformylase [Neisseria meningitidis M01-240355]
gi|385856258|ref|YP_005902770.1| peptide deformylase [Neisseria meningitidis NZ-05/33]
gi|416159203|ref|ZP_11605679.1| peptide deformylase [Neisseria meningitidis N1568]
gi|416167583|ref|ZP_11607681.1| peptide deformylase [Neisseria meningitidis OX99.30304]
gi|416176242|ref|ZP_11609543.1| peptide deformylase [Neisseria meningitidis M6190]
gi|416181154|ref|ZP_11611509.1| peptide deformylase [Neisseria meningitidis M13399]
gi|416186057|ref|ZP_11613506.1| peptide deformylase [Neisseria meningitidis M0579]
gi|416190858|ref|ZP_11615969.1| peptide deformylase [Neisseria meningitidis ES14902]
gi|416194640|ref|ZP_11617410.1| peptide deformylase [Neisseria meningitidis CU385]
gi|416199747|ref|ZP_11619456.1| peptide deformylase [Neisseria meningitidis 961-5945]
gi|416211454|ref|ZP_11621380.1| peptide deformylase [Neisseria meningitidis M01-240013]
gi|418287327|ref|ZP_12899940.1| peptide deformylase [Neisseria meningitidis NM233]
gi|418289567|ref|ZP_12901836.1| peptide deformylase [Neisseria meningitidis NM220]
gi|421537899|ref|ZP_15984081.1| peptide deformylase [Neisseria meningitidis 93003]
gi|421539307|ref|ZP_15985469.1| peptide deformylase [Neisseria meningitidis 93004]
gi|421541455|ref|ZP_15987572.1| peptide deformylase [Neisseria meningitidis NM255]
gi|421543512|ref|ZP_15989603.1| peptide deformylase [Neisseria meningitidis NM140]
gi|421545572|ref|ZP_15991632.1| peptide deformylase [Neisseria meningitidis NM183]
gi|421547641|ref|ZP_15993673.1| peptide deformylase [Neisseria meningitidis NM2781]
gi|421549669|ref|ZP_15995679.1| peptide deformylase [Neisseria meningitidis 69166]
gi|421551848|ref|ZP_15997830.1| peptide deformylase [Neisseria meningitidis NM576]
gi|421553859|ref|ZP_15999811.1| peptide deformylase [Neisseria meningitidis 98008]
gi|421556096|ref|ZP_16002013.1| peptide deformylase [Neisseria meningitidis 80179]
gi|421558227|ref|ZP_16004111.1| peptide deformylase [Neisseria meningitidis 92045]
gi|421560262|ref|ZP_16006121.1| peptide deformylase [Neisseria meningitidis NM2657]
gi|421562337|ref|ZP_16008164.1| peptide deformylase [Neisseria meningitidis NM2795]
gi|421564486|ref|ZP_16010285.1| peptide deformylase [Neisseria meningitidis NM3081]
gi|421566582|ref|ZP_16012325.1| peptide deformylase [Neisseria meningitidis NM3001]
gi|421907682|ref|ZP_16337557.1| polypeptide deformylase [Neisseria meningitidis alpha704]
gi|433464104|ref|ZP_20421598.1| peptide deformylase [Neisseria meningitidis NM422]
gi|433466227|ref|ZP_20423690.1| peptide deformylase [Neisseria meningitidis 87255]
gi|433468308|ref|ZP_20425746.1| peptide deformylase [Neisseria meningitidis 98080]
gi|433470444|ref|ZP_20427844.1| peptide deformylase [Neisseria meningitidis 68094]
gi|433472491|ref|ZP_20429861.1| peptide deformylase [Neisseria meningitidis 97021]
gi|433474584|ref|ZP_20431932.1| peptide deformylase [Neisseria meningitidis 88050]
gi|433476687|ref|ZP_20434015.1| peptide deformylase [Neisseria meningitidis 70012]
gi|433478834|ref|ZP_20436133.1| peptide deformylase [Neisseria meningitidis 63041]
gi|433480915|ref|ZP_20438187.1| peptide deformylase [Neisseria meningitidis 2006087]
gi|433483039|ref|ZP_20440279.1| peptide deformylase [Neisseria meningitidis 2002038]
gi|433485137|ref|ZP_20442344.1| peptide deformylase [Neisseria meningitidis 97014]
gi|433487308|ref|ZP_20444487.1| peptide deformylase [Neisseria meningitidis M13255]
gi|433489482|ref|ZP_20446621.1| peptide deformylase [Neisseria meningitidis NM418]
gi|433491583|ref|ZP_20448686.1| peptide deformylase [Neisseria meningitidis NM586]
gi|433493705|ref|ZP_20450781.1| peptide deformylase [Neisseria meningitidis NM762]
gi|433495821|ref|ZP_20452870.1| peptide deformylase [Neisseria meningitidis M7089]
gi|433497821|ref|ZP_20454838.1| peptide deformylase [Neisseria meningitidis M7124]
gi|433499893|ref|ZP_20456886.1| peptide deformylase [Neisseria meningitidis NM174]
gi|433501987|ref|ZP_20458960.1| peptide deformylase [Neisseria meningitidis NM126]
gi|433504106|ref|ZP_20461051.1| peptide deformylase [Neisseria meningitidis 9506]
gi|433508452|ref|ZP_20465338.1| peptide deformylase [Neisseria meningitidis 12888]
gi|433510378|ref|ZP_20467222.1| peptide deformylase [Neisseria meningitidis 4119]
gi|433512468|ref|ZP_20469270.1| peptide deformylase [Neisseria meningitidis 63049]
gi|433514579|ref|ZP_20471355.1| peptide deformylase [Neisseria meningitidis 2004090]
gi|433516695|ref|ZP_20473449.1| peptide deformylase [Neisseria meningitidis 96023]
gi|433518888|ref|ZP_20475615.1| peptide deformylase [Neisseria meningitidis 65014]
gi|433520897|ref|ZP_20477599.1| peptide deformylase [Neisseria meningitidis 61103]
gi|433523044|ref|ZP_20479717.1| peptide deformylase [Neisseria meningitidis 97020]
gi|433525160|ref|ZP_20481806.1| peptide deformylase [Neisseria meningitidis 69096]
gi|433527272|ref|ZP_20483885.1| peptide deformylase [Neisseria meningitidis NM3652]
gi|433529363|ref|ZP_20485963.1| peptide deformylase [Neisseria meningitidis NM3642]
gi|433531485|ref|ZP_20488054.1| peptide deformylase [Neisseria meningitidis 2007056]
gi|433533699|ref|ZP_20490248.1| peptide deformylase [Neisseria meningitidis 2001212]
gi|433535710|ref|ZP_20492230.1| peptide deformylase [Neisseria meningitidis 77221]
gi|433537870|ref|ZP_20494357.1| peptide deformylase [Neisseria meningitidis 70030]
gi|433540043|ref|ZP_20496500.1| peptide deformylase [Neisseria meningitidis 63006]
gi|54036954|sp|P63916.1|DEF_NEIMB RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|54040742|sp|P63915.1|DEF_NEIMA RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|158512959|sp|A1KRE5.1|DEF_NEIMF RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|189083074|sp|A9M464.1|DEF_NEIM0 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|7225325|gb|AAF40569.1| peptide deformylase [Neisseria meningitidis MC58]
gi|120865694|emb|CAM09421.1| polypeptide deformylase [Neisseria meningitidis FAM18]
gi|121051210|emb|CAM07481.1| polypeptide deformylase [Neisseria meningitidis Z2491]
gi|161596498|gb|ABX74158.1| polypeptide deformylase [Neisseria meningitidis 053442]
gi|254669386|emb|CBA08535.1| peptide deformylase [Neisseria meningitidis alpha14]
gi|254671149|emb|CBA08206.1| polypeptide deformylase [Neisseria meningitidis alpha153]
gi|254672814|emb|CBA06953.1| polypeptide deformylase [Neisseria meningitidis alpha275]
gi|261391648|emb|CAX49096.1| peptide deformylase (PDF; polypeptide deformylase) [Neisseria
meningitidis 8013]
gi|308388328|gb|ADO30648.1| polypeptide deformylase [Neisseria meningitidis alpha710]
gi|319411407|emb|CBY91818.1| peptide deformylase (PDF; polypeptide deformylase) [Neisseria
meningitidis WUE 2594]
gi|325129146|gb|EGC51994.1| peptide deformylase [Neisseria meningitidis N1568]
gi|325131145|gb|EGC53866.1| peptide deformylase [Neisseria meningitidis OX99.30304]
gi|325133177|gb|EGC55848.1| peptide deformylase [Neisseria meningitidis M6190]
gi|325135219|gb|EGC57844.1| peptide deformylase [Neisseria meningitidis M13399]
gi|325137169|gb|EGC59764.1| peptide deformylase [Neisseria meningitidis M0579]
gi|325138789|gb|EGC61341.1| peptide deformylase [Neisseria meningitidis ES14902]
gi|325141255|gb|EGC63754.1| peptide deformylase [Neisseria meningitidis CU385]
gi|325143271|gb|EGC65609.1| peptide deformylase [Neisseria meningitidis 961-5945]
gi|325145432|gb|EGC67708.1| peptide deformylase [Neisseria meningitidis M01-240013]
gi|325197399|gb|ADY92855.1| peptide deformylase [Neisseria meningitidis G2136]
gi|325199324|gb|ADY94779.1| peptide deformylase [Neisseria meningitidis H44/76]
gi|325203055|gb|ADY98509.1| peptide deformylase [Neisseria meningitidis M01-240149]
gi|325203229|gb|ADY98682.1| peptide deformylase [Neisseria meningitidis M01-240355]
gi|325205203|gb|ADZ00656.1| peptide deformylase [Neisseria meningitidis M04-240196]
gi|325207147|gb|ADZ02599.1| peptide deformylase [Neisseria meningitidis NZ-05/33]
gi|372203322|gb|EHP17021.1| peptide deformylase [Neisseria meningitidis NM220]
gi|372203898|gb|EHP17495.1| peptide deformylase [Neisseria meningitidis NM233]
gi|389604730|emb|CCA43656.1| peptide deformylase [Neisseria meningitidis alpha522]
gi|393291351|emb|CCI73556.1| polypeptide deformylase [Neisseria meningitidis alpha704]
gi|402317936|gb|EJU53463.1| peptide deformylase [Neisseria meningitidis 93003]
gi|402319824|gb|EJU55328.1| peptide deformylase [Neisseria meningitidis NM255]
gi|402321887|gb|EJU57358.1| peptide deformylase [Neisseria meningitidis 93004]
gi|402325800|gb|EJU61207.1| peptide deformylase [Neisseria meningitidis NM183]
gi|402326354|gb|EJU61756.1| peptide deformylase [Neisseria meningitidis NM140]
gi|402327661|gb|EJU63048.1| peptide deformylase [Neisseria meningitidis NM2781]
gi|402331620|gb|EJU66952.1| peptide deformylase [Neisseria meningitidis 69166]
gi|402333116|gb|EJU68431.1| peptide deformylase [Neisseria meningitidis NM576]
gi|402334217|gb|EJU69509.1| peptide deformylase [Neisseria meningitidis 98008]
gi|402337949|gb|EJU73188.1| peptide deformylase [Neisseria meningitidis 80179]
gi|402338621|gb|EJU73852.1| peptide deformylase [Neisseria meningitidis 92045]
gi|402340435|gb|EJU75635.1| peptide deformylase [Neisseria meningitidis NM2657]
gi|402342993|gb|EJU78148.1| peptide deformylase [Neisseria meningitidis NM2795]
gi|402345006|gb|EJU80133.1| peptide deformylase [Neisseria meningitidis NM3001]
gi|402346083|gb|EJU81187.1| peptide deformylase [Neisseria meningitidis NM3081]
gi|432205015|gb|ELK61046.1| peptide deformylase [Neisseria meningitidis 87255]
gi|432205914|gb|ELK61929.1| peptide deformylase [Neisseria meningitidis NM422]
gi|432206644|gb|ELK62648.1| peptide deformylase [Neisseria meningitidis 98080]
gi|432211877|gb|ELK67821.1| peptide deformylase [Neisseria meningitidis 68094]
gi|432212375|gb|ELK68313.1| peptide deformylase [Neisseria meningitidis 97021]
gi|432212644|gb|ELK68579.1| peptide deformylase [Neisseria meningitidis 88050]
gi|432217840|gb|ELK73705.1| peptide deformylase [Neisseria meningitidis 70012]
gi|432218808|gb|ELK74660.1| peptide deformylase [Neisseria meningitidis 63041]
gi|432219268|gb|ELK75115.1| peptide deformylase [Neisseria meningitidis 2006087]
gi|432223869|gb|ELK79644.1| peptide deformylase [Neisseria meningitidis 2002038]
gi|432224980|gb|ELK80740.1| peptide deformylase [Neisseria meningitidis 97014]
gi|432226073|gb|ELK81806.1| peptide deformylase [Neisseria meningitidis M13255]
gi|432230478|gb|ELK86153.1| peptide deformylase [Neisseria meningitidis NM418]
gi|432231268|gb|ELK86935.1| peptide deformylase [Neisseria meningitidis NM586]
gi|432231883|gb|ELK87538.1| peptide deformylase [Neisseria meningitidis NM762]
gi|432237004|gb|ELK92604.1| peptide deformylase [Neisseria meningitidis M7124]
gi|432237463|gb|ELK93056.1| peptide deformylase [Neisseria meningitidis M7089]
gi|432237961|gb|ELK93546.1| peptide deformylase [Neisseria meningitidis NM174]
gi|432243489|gb|ELK99000.1| peptide deformylase [Neisseria meningitidis 9506]
gi|432243742|gb|ELK99248.1| peptide deformylase [Neisseria meningitidis NM126]
gi|432250103|gb|ELL05501.1| peptide deformylase [Neisseria meningitidis 12888]
gi|432250223|gb|ELL05618.1| peptide deformylase [Neisseria meningitidis 63049]
gi|432250656|gb|ELL06046.1| peptide deformylase [Neisseria meningitidis 4119]
gi|432256243|gb|ELL11566.1| peptide deformylase [Neisseria meningitidis 2004090]
gi|432256487|gb|ELL11809.1| peptide deformylase [Neisseria meningitidis 96023]
gi|432256853|gb|ELL12164.1| peptide deformylase [Neisseria meningitidis 65014]
gi|432262681|gb|ELL17916.1| peptide deformylase [Neisseria meningitidis 61103]
gi|432262917|gb|ELL18148.1| peptide deformylase [Neisseria meningitidis 97020]
gi|432263308|gb|ELL18528.1| peptide deformylase [Neisseria meningitidis 69096]
gi|432267341|gb|ELL22519.1| peptide deformylase [Neisseria meningitidis NM3652]
gi|432269505|gb|ELL24662.1| peptide deformylase [Neisseria meningitidis 2007056]
gi|432270014|gb|ELL25161.1| peptide deformylase [Neisseria meningitidis NM3642]
gi|432274252|gb|ELL29345.1| peptide deformylase [Neisseria meningitidis 2001212]
gi|432276010|gb|ELL31072.1| peptide deformylase [Neisseria meningitidis 70030]
gi|432276721|gb|ELL31776.1| peptide deformylase [Neisseria meningitidis 77221]
gi|432278024|gb|ELL33068.1| peptide deformylase [Neisseria meningitidis 63006]
Length = 167
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 68/113 (60%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY++ GIGL+A QV ++ +++V + +R E V +NP + + + YEEGC
Sbjct: 35 MFETMYESRGIGLAATQVDVHERVVVMDLTEDRSEPR--VFINPVIVEKDGET-TYEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PGI+ V R E VK++A + G +F++ L A QHE DHL VFV
Sbjct: 92 LSVPGIYDTVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFV 144
>gi|218510166|ref|ZP_03508044.1| peptide deformylase [Rhizobium etli Brasil 5]
Length = 133
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%)
Query: 5 MYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFP 64
MY GIGL+A Q+G+ +++V + E E + V +NP + K S++ YEEGCLS P
Sbjct: 1 MYDAPGIGLAAIQIGVPRRMLVIDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIP 60
Query: 65 GIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
+A+VERP V + D NG +V L A QHE DHL
Sbjct: 61 DYYAEVERPAVVSVKYLDRNGKEQTVEADGLLATCLQHEIDHL 103
>gi|387891272|ref|YP_006321569.1| peptide deformylase [Pseudomonas fluorescens A506]
gi|423689107|ref|ZP_17663627.1| peptide deformylase [Pseudomonas fluorescens SS101]
gi|387159897|gb|AFJ55096.1| peptide deformylase [Pseudomonas fluorescens A506]
gi|387999206|gb|EIK60535.1| peptide deformylase [Pseudomonas fluorescens SS101]
Length = 168
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++++++V + +R E V +NP + +M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHLRVVVMDLSEDRSEPR--VYINPEFEPLTEEMGEYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + +VERP VKI A D +G F + L A QHE DHL
Sbjct: 93 LSVPEFYENVERPLRVKIKALDRDGKPFELIAEGLLAVCIQHECDHL 139
>gi|229019065|ref|ZP_04175903.1| Peptide deformylase [Bacillus cereus AH1273]
gi|229025309|ref|ZP_04181728.1| Peptide deformylase [Bacillus cereus AH1272]
gi|423389826|ref|ZP_17367052.1| peptide deformylase 1 [Bacillus cereus BAG1X1-3]
gi|423418226|ref|ZP_17395315.1| peptide deformylase 1 [Bacillus cereus BAG3X2-1]
gi|228736000|gb|EEL86576.1| Peptide deformylase [Bacillus cereus AH1272]
gi|228742233|gb|EEL92395.1| Peptide deformylase [Bacillus cereus AH1273]
gi|401106499|gb|EJQ14460.1| peptide deformylase 1 [Bacillus cereus BAG3X2-1]
gi|401641917|gb|EJS59634.1| peptide deformylase 1 [Bacillus cereus BAG1X1-3]
Length = 156
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 67/109 (61%), Gaps = 6/109 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRV-NKYSNKMIPYEEG 59
M + M DG+GL+APQVG+++Q+ V + + G+ I L+NP + K ++ P EG
Sbjct: 35 MHETMLIADGVGLAAPQVGVSLQVAVVDIDDDTGK---IELINPVILEKRGEQVGP--EG 89
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
CLSFPG++ +VER + +K+ A++ G F + D AR QHE DHL
Sbjct: 90 CLSFPGLYGEVERADYIKVRAQNRRGKIFLLEAKDFLARAIQHEIDHLH 138
>gi|229031497|ref|ZP_04187497.1| Peptide deformylase [Bacillus cereus AH1271]
gi|228729786|gb|EEL80766.1| Peptide deformylase [Bacillus cereus AH1271]
Length = 156
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 67/109 (61%), Gaps = 6/109 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRV-NKYSNKMIPYEEG 59
M + M DG+GL+APQVG+++Q+ V + + G+ I L+NP + K ++ P EG
Sbjct: 35 MHETMLIADGVGLAAPQVGVSLQVAVVDIDDDTGK---IELINPSILEKRGEQVGP--EG 89
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
CLSFPG++ +VER + +K+ A++ G F + AR QHE DHLQ
Sbjct: 90 CLSFPGLYGEVERADYIKVRAQNRRGKVFLLEAEGFLARAIQHEIDHLQ 138
>gi|389577285|ref|ZP_10167313.1| peptide deformylase [Eubacterium cellulosolvens 6]
gi|389312770|gb|EIM57703.1| peptide deformylase [Eubacterium cellulosolvens 6]
Length = 173
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 62/107 (57%), Gaps = 5/107 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY G+GL+APQVG+ ++ V + GE V VNP + + S + +EGC
Sbjct: 35 MFDTMYDACGVGLAAPQVGVLRRIAVIDVDGEH----PYVFVNPEIIEMSGEQTG-DEGC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG+ V RP+ VK+ A DIN F + + L AR HEF+HL
Sbjct: 90 LSIPGMTGTVTRPDYVKVKAFDINMEPFELEATGLLARACCHEFEHL 136
>gi|225012717|ref|ZP_03703152.1| peptide deformylase [Flavobacteria bacterium MS024-2A]
gi|225003250|gb|EEG41225.1| peptide deformylase [Flavobacteria bacterium MS024-2A]
Length = 195
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 12/120 (10%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGERGEGEEI----------VLVNPRVNK 48
M++ MY ++G+GL+APQ+G++++L V + P E E +E+ V +NP V +
Sbjct: 34 MWETMYASNGVGLAAPQIGLSIRLFVIDTAPFSEDDELDELEAETLKSFKKVFINPVVIE 93
Query: 49 YSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
+ + EGCLS P + DV R E +KI D + L+ L ARV QHE+DH++
Sbjct: 94 EDGSLWEFNEGCLSIPDVREDVSRHERIKIHYFDQQFKEQELVLTGLAARVVQHEYDHIE 153
>gi|120436619|ref|YP_862305.1| peptide deformylase [Gramella forsetii KT0803]
gi|158512448|sp|A0M3P3.1|DEF_GRAFK RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|117578769|emb|CAL67238.1| peptide deformylase [Gramella forsetii KT0803]
Length = 196
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 12/120 (10%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPV-----GERGEGEEIVL-------VNPRVNK 48
M+D MY G+GL+APQVG+ V++ + +P E E E+ VL +NP++ +
Sbjct: 34 MWDTMYNAYGVGLAAPQVGLPVRMFMIDPAPFADDEELDEAEKKVLMDLRKVFINPQIIE 93
Query: 49 YSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
+ + + EGCLS P + DV R + I+ D N + + + S L ARV QHE+DH++
Sbjct: 94 ETGEEWAFSEGCLSIPEVREDVFRQPDITIEYHDENWEKHTETYSGLAARVIQHEYDHIE 153
>gi|423612084|ref|ZP_17587945.1| peptide deformylase 1 [Bacillus cereus VD107]
gi|401247091|gb|EJR53435.1| peptide deformylase 1 [Bacillus cereus VD107]
Length = 156
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 67/109 (61%), Gaps = 6/109 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRV-NKYSNKMIPYEEG 59
M + M DG+GL+APQVG+++Q+ V + + G+ I L+NP + K ++ P EG
Sbjct: 35 MHETMLIADGVGLAAPQVGVSLQVAVVDIGDDTGK---IELINPVILEKRGEQVGP--EG 89
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
CLSFPG++ +VER + +K+ A++ G F + D AR QHE DHL
Sbjct: 90 CLSFPGLYGEVERADYIKVRAQNRRGKIFLLEAKDFLARAIQHEIDHLH 138
>gi|138894692|ref|YP_001125145.1| peptide deformylase [Geobacillus thermodenitrificans NG80-2]
gi|196247688|ref|ZP_03146390.1| peptide deformylase [Geobacillus sp. G11MC16]
gi|134266205|gb|ABO66400.1| Polypeptide deformylase [Geobacillus thermodenitrificans NG80-2]
gi|196212472|gb|EDY07229.1| peptide deformylase [Geobacillus sp. G11MC16]
Length = 157
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 63/108 (58%), Gaps = 4/108 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M++ M DG+GL+APQVGI Q+ V + E G I L+NP + + + I E GC
Sbjct: 35 MYETMIAADGVGLAAPQVGIAKQVAVVDIGDEHGR---IELINPVIIEARGEQIDVE-GC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LSFPG+ +V R VK+ A++ G F++S + AR QHE DHL
Sbjct: 91 LSFPGLFGEVPRANYVKVRAQNRRGRLFTLSATGFLARALQHEIDHLH 138
>gi|152988653|ref|YP_001345416.1| peptide deformylase [Pseudomonas aeruginosa PA7]
gi|150963811|gb|ABR85836.1| peptide deformylase [Pseudomonas aeruginosa PA7]
Length = 168
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + ++ E V +NP + +M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDKSEPR--VFINPEFEPLTEEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ V+I A D +G F L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVRIKALDRDGKPFEEVAEGLLAVCIQHECDHL 139
>gi|110637113|ref|YP_677320.1| peptide deformylase [Cytophaga hutchinsonii ATCC 33406]
gi|123163813|sp|Q11X86.1|DEF_CYTH3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|110279794|gb|ABG57980.1| peptide deformylase [Cytophaga hutchinsonii ATCC 33406]
Length = 184
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPV---GERGEGEEIVLVNPRVNKYSNKMIPYE 57
MF+ M G+GL+APQV +N+++ V + E+ +NP + + PYE
Sbjct: 34 MFETMENAHGVGLAAPQVALNLRMFVIDTSVFDDEKITPVRKTFINPVIEEEWGDEWPYE 93
Query: 58 EGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
EGCLS PG+ ADV RP +++I D + + ARV QHE+DH++
Sbjct: 94 EGCLSIPGVRADVYRPANLRIRYFDTDWKEHVEEFDGMTARVIQHEYDHIE 144
>gi|422110718|ref|ZP_16380632.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309378546|emb|CBX22818.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 167
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + + + YEEGC
Sbjct: 35 MFETMYEARGIGLAATQVDVHERIVVMDLTEDRSEPR--VFINPVIVEKDGET-TYEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PGI+ V R E VK++A + G +F++ L A QHE DHL VFV
Sbjct: 92 LSVPGIYDTVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFV 144
>gi|163941605|ref|YP_001646489.1| peptide deformylase [Bacillus weihenstephanensis KBAB4]
gi|229013051|ref|ZP_04170216.1| Peptide deformylase [Bacillus mycoides DSM 2048]
gi|229061470|ref|ZP_04198815.1| Peptide deformylase [Bacillus cereus AH603]
gi|229134675|ref|ZP_04263484.1| Peptide deformylase [Bacillus cereus BDRD-ST196]
gi|229168607|ref|ZP_04296330.1| Peptide deformylase [Bacillus cereus AH621]
gi|423367911|ref|ZP_17345343.1| peptide deformylase 1 [Bacillus cereus VD142]
gi|423483457|ref|ZP_17460147.1| peptide deformylase 1 [Bacillus cereus BAG6X1-2]
gi|423489043|ref|ZP_17465725.1| peptide deformylase 1 [Bacillus cereus BtB2-4]
gi|423494768|ref|ZP_17471412.1| peptide deformylase 1 [Bacillus cereus CER057]
gi|423498440|ref|ZP_17475057.1| peptide deformylase 1 [Bacillus cereus CER074]
gi|423511901|ref|ZP_17488432.1| peptide deformylase 1 [Bacillus cereus HuA2-1]
gi|423518557|ref|ZP_17495038.1| peptide deformylase 1 [Bacillus cereus HuA2-4]
gi|423558570|ref|ZP_17534872.1| peptide deformylase 1 [Bacillus cereus MC67]
gi|423592137|ref|ZP_17568168.1| peptide deformylase 1 [Bacillus cereus VD048]
gi|423598822|ref|ZP_17574822.1| peptide deformylase 1 [Bacillus cereus VD078]
gi|423661293|ref|ZP_17636462.1| peptide deformylase 1 [Bacillus cereus VDM022]
gi|423669441|ref|ZP_17644470.1| peptide deformylase 1 [Bacillus cereus VDM034]
gi|423674380|ref|ZP_17649319.1| peptide deformylase 1 [Bacillus cereus VDM062]
gi|163863802|gb|ABY44861.1| peptide deformylase [Bacillus weihenstephanensis KBAB4]
gi|228615013|gb|EEK72115.1| Peptide deformylase [Bacillus cereus AH621]
gi|228648721|gb|EEL04747.1| Peptide deformylase [Bacillus cereus BDRD-ST196]
gi|228717893|gb|EEL69541.1| Peptide deformylase [Bacillus cereus AH603]
gi|228748305|gb|EEL98165.1| Peptide deformylase [Bacillus mycoides DSM 2048]
gi|401082772|gb|EJP91037.1| peptide deformylase 1 [Bacillus cereus VD142]
gi|401141008|gb|EJQ48563.1| peptide deformylase 1 [Bacillus cereus BAG6X1-2]
gi|401150861|gb|EJQ58313.1| peptide deformylase 1 [Bacillus cereus CER057]
gi|401160489|gb|EJQ67867.1| peptide deformylase 1 [Bacillus cereus CER074]
gi|401160765|gb|EJQ68140.1| peptide deformylase 1 [Bacillus cereus HuA2-4]
gi|401191838|gb|EJQ98860.1| peptide deformylase 1 [Bacillus cereus MC67]
gi|401232270|gb|EJR38772.1| peptide deformylase 1 [Bacillus cereus VD048]
gi|401237092|gb|EJR43549.1| peptide deformylase 1 [Bacillus cereus VD078]
gi|401298568|gb|EJS04168.1| peptide deformylase 1 [Bacillus cereus VDM034]
gi|401301334|gb|EJS06923.1| peptide deformylase 1 [Bacillus cereus VDM022]
gi|401309931|gb|EJS15264.1| peptide deformylase 1 [Bacillus cereus VDM062]
gi|402432291|gb|EJV64350.1| peptide deformylase 1 [Bacillus cereus BtB2-4]
gi|402450162|gb|EJV81996.1| peptide deformylase 1 [Bacillus cereus HuA2-1]
Length = 156
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 67/109 (61%), Gaps = 6/109 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRV-NKYSNKMIPYEEG 59
M + M DG+GL+APQVG+++Q+ V + + G+ I L+NP + K ++ P EG
Sbjct: 35 MHETMLIADGVGLAAPQVGVSLQVAVVDIGDDTGK---IELINPVILEKRGEQVGP--EG 89
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
CLSFPG++ +VER + +K+ A++ G F + D AR QHE DHL
Sbjct: 90 CLSFPGLYGEVERADYIKVRAQNRRGKIFLLEADDFLARAIQHEIDHLH 138
>gi|383754593|ref|YP_005433496.1| putative peptide deformylase [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381366645|dbj|BAL83473.1| putative peptide deformylase [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 155
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ DG+GL+APQ+G N++L+V + E G E L+NP + +++ E GC
Sbjct: 35 MAETMYENDGVGLAAPQIGRNIRLVVIDCQDEHGLLE---LINPVITFKEGEVVDTE-GC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LS P I+ +V+R VK++ + G R ++ + L AR QHE DHL Q+F+
Sbjct: 91 LSVPEIYGEVKRAAKVKVEFTNRRGKRQHLTATGLLARCIQHELDHLEGQLFI 143
>gi|333368768|ref|ZP_08460931.1| peptide deformylase [Psychrobacter sp. 1501(2011)]
gi|332976314|gb|EGK13171.1| peptide deformylase [Psychrobacter sp. 1501(2011)]
Length = 176
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QV ++QL+V + + E + V +NP++ PYEEGC
Sbjct: 35 MIETMYDAKGIGLAATQVDRHIQLIVMD-LSENNDSPR-VFINPKITPLVEDKKPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P ++ VERP VKI+A D +G F L A QHE DHL
Sbjct: 93 LSVPDVYDSVERPVKVKIEALDGDGKPFEEIAEGLLAVCIQHEMDHL 139
>gi|291514572|emb|CBK63782.1| peptide deformylase [Alistipes shahii WAL 8301]
Length = 181
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 65/113 (57%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGERGEG---EEIVLVNPRVNKYSNKMIP 55
MF + + +G+GL+APQ+G +++L + + P E + VNP + ++S +
Sbjct: 34 MFLTLEEAEGVGLAAPQIGKDIRLFIVDCTPWAEEDPSCADYKRAFVNPEIYEFSEEKKT 93
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
Y EGCLSFPGIHADV R S+++ D + + L A V QHE+DH++
Sbjct: 94 YNEGCLSFPGIHADVARSLSIRMRYMDTDFVEHDEEFTGLKAWVIQHEYDHIE 146
>gi|404400582|ref|ZP_10992166.1| peptide deformylase [Pseudomonas fuscovaginae UPB0736]
Length = 168
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + + Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHQRIVVMDLSEDRSEPR--VFINPEFEALTEEKDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP V+I A D +G F + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPTRVRIKALDRDGKPFELEADGLLAVCIQHECDHL 139
>gi|419952771|ref|ZP_14468918.1| peptide deformylase [Pseudomonas stutzeri TS44]
gi|387970816|gb|EIK55094.1| peptide deformylase [Pseudomonas stutzeri TS44]
Length = 168
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + ++ Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSEPR--VFINPEFEALTEELDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ VK+ A D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVKVRALDRDGQPYELIAEGLLAVCIQHECDHL 139
>gi|339478027|ref|YP_004706847.1| peptide deformylase [Candidatus Moranella endobia PCIT]
gi|338172578|gb|AEI74979.1| peptide deformylase [Candidatus Moranella endobia PCIT]
Length = 164
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 62/107 (57%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY DGIGL+A QV I+ +L+V + V E + +VL+NP + S + I EGC
Sbjct: 35 MFETMYAADGIGLAATQVDIHQRLIVLD-VSE-NHRQRLVLINPELLDKSGE-ISINEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG H V R V++ A D NG F + DL + QHE DHL
Sbjct: 92 LSIPGQHCFVPRAAKVRVRALDSNGNSFELEAEDLLSICIQHEMDHL 138
>gi|15807421|ref|NP_296154.1| peptide deformylase [Deinococcus radiodurans R1]
gi|23396556|sp|Q9RRQ4.1|DEF_DEIRA RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|6460249|gb|AAF11975.1|AE002073_5 polypeptide deformylase [Deinococcus radiodurans R1]
Length = 232
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 71/124 (57%), Gaps = 19/124 (15%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMV---FNPVGERGEGEEI----------VLVNPRV- 46
M + M++ G+GL+APQ+G+ V++ V + E EG+E V++NP V
Sbjct: 62 MLETMFEERGVGLAAPQIGLPVRMFVAVEYADDEEENEGQETPLRSRVLREYVMLNPVVK 121
Query: 47 --NKYSNKMIPYEEGCLSFPGIHAD-VERPESVKIDARDINGARFSVSLSDLPARVFQHE 103
NK +K Y+EGCLS PGI+ D V R V++D D++G S+ D ARVFQHE
Sbjct: 122 VINKKKDKS--YQEGCLSIPGIYEDGVPRARQVRVDYTDLDGQPRSIEAEDYLARVFQHE 179
Query: 104 FDHL 107
DHL
Sbjct: 180 TDHL 183
>gi|170288957|ref|YP_001739195.1| peptide deformylase [Thermotoga sp. RQ2]
gi|281412566|ref|YP_003346645.1| peptide deformylase [Thermotoga naphthophila RKU-10]
gi|238688844|sp|B1LB14.1|DEF_THESQ RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|170176460|gb|ACB09512.1| peptide deformylase [Thermotoga sp. RQ2]
gi|281373669|gb|ADA67231.1| peptide deformylase [Thermotoga naphthophila RKU-10]
Length = 164
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 62/107 (57%), Gaps = 5/107 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY DG+GL+APQVGI+ + V + G G + ++NP + + + EEGC
Sbjct: 33 MIETMYHYDGVGLAAPQVGISQRFFVMDV----GNGP-VAVINPEILEIDPETEVAEEGC 87
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFP I ++ER + +K+ ++ G L ARVFQHEFDHL
Sbjct: 88 LSFPEIFVEIERSKRIKVKYQNTRGEYVEEELEGYAARVFQHEFDHL 134
>gi|384098422|ref|ZP_09999538.1| peptide deformylase [Imtechella halotolerans K1]
gi|383835679|gb|EID75102.1| peptide deformylase [Imtechella halotolerans K1]
Length = 196
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 66/120 (55%), Gaps = 12/120 (10%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGE----------RGEGEEIVLVNPRVNK 48
M D MY G+GL+APQ+G+ ++L V + P E +G + V VNP + +
Sbjct: 34 MMDTMYGAYGVGLAAPQIGLALRLFVIDASPFAEDEDLSEEEQKELQGFKKVFVNPIILE 93
Query: 49 YSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
S + EGCLS P I DV R E+V+I +D N F + S L ARV QHE+DH++
Sbjct: 94 ESGNEWAFNEGCLSIPDIREDVFRKETVRIRYQDENFQTFEETYSGLAARVIQHEYDHIE 153
>gi|323456767|gb|EGB12633.1| hypothetical protein AURANDRAFT_14540, partial [Aureococcus
anophagefferens]
Length = 181
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 64/111 (57%), Gaps = 3/111 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGER-GEGEEIVLVNPRVNKYSNKMIPYEEG 59
M +MY+ DG+GL+A QVG+ + V+NP G+R + E ++VNPR+ KY EEG
Sbjct: 44 MMSIMYQADGVGLAATQVGLWKRFFVYNPTGDRLMKPYERIVVNPRITKYGEATADEEEG 103
Query: 60 CLSFPGIHAD--VERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
CLS + + R + ++ D + + LS ARVFQHE+DH++
Sbjct: 104 CLSSRSENCAGVIRRSLDIWVEYVDERNKKRTKKLSGFEARVFQHEYDHIE 154
>gi|238752657|ref|ZP_04614128.1| Peptide deformylase 2 [Yersinia rohdei ATCC 43380]
gi|238709084|gb|EEQ01331.1| Peptide deformylase 2 [Yersinia rohdei ATCC 43380]
Length = 170
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 63/107 (58%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY +GIGL+A QV +++Q++V + R + +VL+NP + + S + EEGC
Sbjct: 35 MFDTMYAEEGIGLAATQVDVHLQIIVIDVSENRDQ--RLVLINPELLEKSGET-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P A V R E VKI A D +G F + DL A QHE DHL
Sbjct: 92 LSIPEQRALVPRAEKVKIRALDRDGKPFELEADDLLAICIQHEMDHL 138
>gi|30263870|ref|NP_846247.1| peptide deformylase [Bacillus anthracis str. Ames]
gi|47529297|ref|YP_020646.1| peptide deformylase [Bacillus anthracis str. 'Ames Ancestor']
gi|49186717|ref|YP_029969.1| peptide deformylase [Bacillus anthracis str. Sterne]
gi|65321194|ref|ZP_00394153.1| COG0242: N-formylmethionyl-tRNA deformylase [Bacillus anthracis
str. A2012]
gi|165872270|ref|ZP_02216907.1| peptide deformylase [Bacillus anthracis str. A0488]
gi|167636413|ref|ZP_02394712.1| peptide deformylase [Bacillus anthracis str. A0442]
gi|167641126|ref|ZP_02399381.1| peptide deformylase [Bacillus anthracis str. A0193]
gi|170688865|ref|ZP_02880068.1| peptide deformylase [Bacillus anthracis str. A0465]
gi|170708808|ref|ZP_02899244.1| peptide deformylase [Bacillus anthracis str. A0389]
gi|177654890|ref|ZP_02936607.1| peptide deformylase [Bacillus anthracis str. A0174]
gi|190565855|ref|ZP_03018774.1| peptide deformylase [Bacillus anthracis str. Tsiankovskii-I]
gi|227813225|ref|YP_002813234.1| peptide deformylase [Bacillus anthracis str. CDC 684]
gi|229601957|ref|YP_002868104.1| peptide deformylase [Bacillus anthracis str. A0248]
gi|254683424|ref|ZP_05147284.1| peptide deformylase [Bacillus anthracis str. CNEVA-9066]
gi|254735906|ref|ZP_05193612.1| peptide deformylase [Bacillus anthracis str. Western North America
USA6153]
gi|254739846|ref|ZP_05197539.1| peptide deformylase [Bacillus anthracis str. Kruger B]
gi|254751036|ref|ZP_05203075.1| peptide deformylase [Bacillus anthracis str. Vollum]
gi|254756701|ref|ZP_05208730.1| peptide deformylase [Bacillus anthracis str. Australia 94]
gi|386737689|ref|YP_006210870.1| Peptide deformylase 1 [Bacillus anthracis str. H9401]
gi|421507407|ref|ZP_15954327.1| peptide deformylase [Bacillus anthracis str. UR-1]
gi|421639622|ref|ZP_16080213.1| peptide deformylase [Bacillus anthracis str. BF1]
gi|39931068|sp|Q81WH1.1|DEF1_BACAN RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|30258514|gb|AAP27733.1| peptide deformylase [Bacillus anthracis str. Ames]
gi|47504445|gb|AAT33121.1| peptide deformylase [Bacillus anthracis str. 'Ames Ancestor']
gi|49180644|gb|AAT56020.1| polypeptide deformylase [Bacillus anthracis str. Sterne]
gi|164711946|gb|EDR17486.1| peptide deformylase [Bacillus anthracis str. A0488]
gi|167510906|gb|EDR86297.1| peptide deformylase [Bacillus anthracis str. A0193]
gi|167528155|gb|EDR90942.1| peptide deformylase [Bacillus anthracis str. A0442]
gi|170126293|gb|EDS95184.1| peptide deformylase [Bacillus anthracis str. A0389]
gi|170667220|gb|EDT17980.1| peptide deformylase [Bacillus anthracis str. A0465]
gi|172080401|gb|EDT65488.1| peptide deformylase [Bacillus anthracis str. A0174]
gi|190562774|gb|EDV16740.1| peptide deformylase [Bacillus anthracis str. Tsiankovskii-I]
gi|227002722|gb|ACP12465.1| peptide deformylase [Bacillus anthracis str. CDC 684]
gi|229266365|gb|ACQ48002.1| peptide deformylase [Bacillus anthracis str. A0248]
gi|384387541|gb|AFH85202.1| Peptide deformylase 1 [Bacillus anthracis str. H9401]
gi|401822541|gb|EJT21691.1| peptide deformylase [Bacillus anthracis str. UR-1]
gi|403393287|gb|EJY90532.1| peptide deformylase [Bacillus anthracis str. BF1]
Length = 156
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 67/109 (61%), Gaps = 6/109 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRV-NKYSNKMIPYEEG 59
M + M DG+GL+APQVG+++Q+ V + + G+ I L+NP + K ++ P EG
Sbjct: 35 MHETMLIADGVGLAAPQVGVSLQVAVVDIGDDTGK---IELINPSILEKRGEQVGP--EG 89
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
CLSFPG++ +VER + +K+ A++ G F + L AR QHE DHL
Sbjct: 90 CLSFPGLYGEVERADYIKVRAQNRRGKVFLLEAEGLLARAIQHEIDHLH 138
>gi|163859048|ref|YP_001633346.1| peptide deformylase [Bordetella petrii DSM 12804]
gi|163262776|emb|CAP45079.1| polypeptide deformylase [Bordetella petrii]
Length = 170
Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 66/113 (58%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY G+GL+A QV ++ +++V + V E G E VL+NP + S++ YEEGC
Sbjct: 35 MADTMYDAPGVGLAATQVDVHERVVVID-VSEEG-NELRVLINPEITWKSDERQTYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LS PGI+ +VER ++ A D +G + L A QHE DHL +VFV
Sbjct: 93 LSVPGIYDEVERAARIRYRALDADGNPYEAEAEGLLAVCVQHELDHLDGKVFV 145
>gi|189347171|ref|YP_001943700.1| peptide deformylase [Chlorobium limicola DSM 245]
gi|238692163|sp|B3EE19.1|DEF_CHLL2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|189341318|gb|ACD90721.1| peptide deformylase [Chlorobium limicola DSM 245]
Length = 185
Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 64/109 (58%), Gaps = 3/109 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGERGEGEEIVLVNPRVNKYSNKMIPYEE 58
MF+ MY GIGL+APQVG +++L+V + + E + +V++NP + EE
Sbjct: 34 MFETMYSAPGIGLAAPQVGRSLRLLVLDISCMREYANVKPMVVINPEIVAVKGYR-SMEE 92
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
GCLS PG+ DV RP S+ ++ RD + + S L ARV QHE DHL
Sbjct: 93 GCLSLPGLQGDVVRPSSISLNYRDEHFEGQNAEFSGLLARVLQHEIDHL 141
>gi|253575776|ref|ZP_04853111.1| polypeptide deformylase [Paenibacillus sp. oral taxon 786 str. D14]
gi|251844819|gb|EES72832.1| polypeptide deformylase [Paenibacillus sp. oral taxon 786 str. D14]
Length = 160
Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 63/108 (58%), Gaps = 6/108 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPR-VNKYSNKMIPYEEG 59
M D MY +G+GL+APQ+GI +++V + E G I L+NP V+K + P EG
Sbjct: 35 MADTMYDAEGVGLAAPQIGILKRVIVVDVGDEHGL---IELINPEIVSKEGEQFGP--EG 89
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS PG DV R +V + D NG + + S+L AR FQHE DHL
Sbjct: 90 CLSIPGYRGDVRRAMTVTVKGLDRNGNEVTYTGSELLARAFQHEIDHL 137
>gi|313886414|ref|ZP_07820134.1| peptide deformylase [Porphyromonas asaccharolytica PR426713P-I]
gi|312924130|gb|EFR34919.1| peptide deformylase [Porphyromonas asaccharolytica PR426713P-I]
Length = 188
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 66/112 (58%), Gaps = 5/112 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGER---GEGEEIVLVNPRVNKYSNKMIP 55
M+ MY++DG+GL+APQ+G N++L V + P+ E ++V++N + S +
Sbjct: 36 MWQTMYESDGVGLAAPQIGRNIRLQVIDATPLAEEYPECAQLKLVMINAHMQSLSEETCS 95
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
EGCLS PGI+ V RP+S+ +D + + LS ARV QHE+DHL
Sbjct: 96 EPEGCLSLPGINERVVRPKSIVVDYMNEQFEPQHLELSGFAARVVQHEYDHL 147
>gi|389756174|ref|ZP_10191406.1| peptide deformylase [Rhodanobacter sp. 115]
gi|388431872|gb|EIL88916.1| peptide deformylase [Rhodanobacter sp. 115]
Length = 178
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN-----PVGERGEGEEIVLVNPRVNKYSNKMIP 55
MFD M+ DG+GL+APQ+G+++QL++F + E + +L+NP + S M
Sbjct: 37 MFDTMHAADGVGLAAPQIGVDLQLVIFGFEHSERYPDAPEVPQTILLNPAITPLSQDMEE 96
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
EGCLS PG+ V R ++ D GA+ + ARV QHE DHL
Sbjct: 97 GWEGCLSVPGLRGAVSRYTLIRYQGLDPKGAKIDRTAEGFHARVVQHECDHL 148
>gi|319778670|ref|YP_004129583.1| peptide deformylase [Taylorella equigenitalis MCE9]
gi|317108694|gb|ADU91440.1| Peptide deformylase [Taylorella equigenitalis MCE9]
gi|399115290|emb|CCG18089.1| peptide deformylase [Taylorella equigenitalis 14/56]
Length = 169
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 67/113 (59%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +G+GL+A QV I+ +++V + ER + +VL+NP + S + + +EEGC
Sbjct: 35 MAETMYAANGVGLAATQVDIHKRIVVIDVSEERNDL--LVLINPEIIGISEEKVIHEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LS P I+ +VER V++ A D NG F L A QHE DHL +VFV
Sbjct: 93 LSVPTIYDNVERFSEVRVKALDQNGNAFEFKADGLLAICVQHELDHLMGKVFV 145
>gi|37528512|ref|NP_931857.1| peptide deformylase [Photorhabdus luminescens subsp. laumondii
TTO1]
gi|39930823|sp|Q7MYI2.1|DEF_PHOLL RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|36787950|emb|CAE17067.1| polypeptide deformylase (PDF) (formylmethionine deformylase)
[Photorhabdus luminescens subsp. laumondii TTO1]
Length = 170
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 62/107 (57%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY +GIGL+A QV I+ +++V + R E +VL+NP + + S + EEGC
Sbjct: 35 MFETMYAEEGIGLAATQVDIHQRIVVIDVSETRNE--RLVLINPELLEKSGET-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P A V R E VKI A D NG F + DL A QHE DHL
Sbjct: 92 LSIPEQRALVPRAEKVKIKALDYNGRPFELQADDLLAICIQHEMDHL 138
>gi|325105696|ref|YP_004275350.1| peptide deformylase [Pedobacter saltans DSM 12145]
gi|324974544|gb|ADY53528.1| peptide deformylase [Pedobacter saltans DSM 12145]
Length = 188
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 61/113 (53%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI-----VLVNPRVNKYSNKMIP 55
MF+ M +G+GL+APQ+G++++L V + E + + +NP + S K
Sbjct: 34 MFETMDNANGVGLAAPQIGLSIRLFVIDATPFADEDASLASFKKIFINPIITDESGKEWK 93
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
+ EGCLS P I DV R E + I D N + + L ARV QHE+DH+Q
Sbjct: 94 FNEGCLSIPDIREDVSRKEQITISYFDENWIHHEDTFNGLAARVIQHEYDHIQ 146
>gi|422022436|ref|ZP_16368944.1| peptide deformylase [Providencia sneebia DSM 19967]
gi|414096929|gb|EKT58585.1| peptide deformylase [Providencia sneebia DSM 19967]
Length = 167
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 1 MFDVMYKTD-GIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
+ D MY TD GIGL+APQ+ +MV + R E +V VNP + + S Y+EG
Sbjct: 34 LLDTMYSTDNGIGLAAPQIAATESVMVIDISENRNEP--LVFVNPEIIE-SEGETSYQEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
CLS P I+ADV R + VK+ A D G F + + A V QHE DHL
Sbjct: 91 CLSVPEIYADVARFQRVKVKALDREGKEFIIDSDEFLAIVMQHEIDHLH 139
>gi|288575787|ref|ZP_05977581.2| peptide deformylase [Neisseria mucosa ATCC 25996]
gi|288566988|gb|EFC88548.1| peptide deformylase [Neisseria mucosa ATCC 25996]
Length = 193
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V VNP + + + YEEGC
Sbjct: 61 MFETMYEARGIGLAATQVDVHERVVVMDLTEDRSEPR--VFVNPVIVEKDGE-TTYEEGC 117
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PGI+ V R E VK++A + G +F++ L A QHE DHL VFV
Sbjct: 118 LSVPGIYDTVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFV 170
>gi|403253397|ref|ZP_10919698.1| peptide deformylase [Thermotoga sp. EMP]
gi|402810931|gb|EJX25419.1| peptide deformylase [Thermotoga sp. EMP]
Length = 164
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 62/107 (57%), Gaps = 5/107 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY DG+GL+APQVGI+ + V + G G + ++NP + + + EEGC
Sbjct: 33 MIETMYHYDGVGLAAPQVGISQRFFVMDV----GNGP-VAVINPEILEIDPETEVAEEGC 87
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFP I ++ER + +K+ ++ G L ARVFQHEFDHL
Sbjct: 88 LSFPEIFVEIERSKRIKVRYQNTKGEYVEEELEGYAARVFQHEFDHL 134
>gi|222084707|ref|YP_002543236.1| peptide deformylase [Agrobacterium radiobacter K84]
gi|398379645|ref|ZP_10537765.1| peptide deformylase [Rhizobium sp. AP16]
gi|221722155|gb|ACM25311.1| peptide deformylase [Agrobacterium radiobacter K84]
gi|397722277|gb|EJK82821.1| peptide deformylase [Rhizobium sp. AP16]
Length = 171
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E + + +V +NP V S++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAVQIGVARRMLVIDVAREGEDKQPLVFINPEVVASSDERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP V + D +G + L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPARVTVKHIDRDGKEQLIEADGLLATCLQHEIDHL 141
>gi|312880068|ref|ZP_07739868.1| peptide deformylase [Aminomonas paucivorans DSM 12260]
gi|310783359|gb|EFQ23757.1| peptide deformylase [Aminomonas paucivorans DSM 12260]
Length = 181
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 64/107 (59%), Gaps = 6/107 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
+++ MY DG+GL+APQVGI+ ++ V + +G++ VL NP + + + + EEGC
Sbjct: 50 LWNTMYLRDGVGLAAPQVGISRKVTVVD-----AQGQKFVLANPEILEREGETV-AEEGC 103
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFPGI V RP +++ ++ G + D ARVF HE DHL
Sbjct: 104 LSFPGIFVPVLRPTRIRLRYQNERGEPVEREVVDFLARVFSHEIDHL 150
>gi|312115223|ref|YP_004012819.1| peptide deformylase [Rhodomicrobium vannielii ATCC 17100]
gi|311220352|gb|ADP71720.1| peptide deformylase [Rhodomicrobium vannielii ATCC 17100]
Length = 176
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+A Q+G+ +L+V + +G+ +VL+NP + + + +EEG
Sbjct: 35 MLETMYAAPGIGLAAVQIGVLRRLIVMDAQKGDEKGKNPVVLINPEILTHGDTPRVHEEG 94
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
CLS P ++A+VERP V++ D G + SDL A + QHE DHL+
Sbjct: 95 CLSIPQMYAEVERPALVRVRYVDAEGKQQERDFSDLEATLVQHEIDHLE 143
>gi|407977640|ref|ZP_11158477.1| peptide deformylase [Bacillus sp. HYC-10]
gi|407415893|gb|EKF37474.1| peptide deformylase [Bacillus sp. HYC-10]
Length = 160
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 62/107 (57%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M + DG+GL+APQ+GI+ ++ V + +GE + I LVNP + + E GC
Sbjct: 35 MYDTMLELDGVGLAAPQIGISKRIAVVD-IGE--DSGRIDLVNPEILEVEGSQTDIE-GC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFP ++ VERP VK+ A D G F++ AR HE DHL
Sbjct: 91 LSFPSLYGTVERPNYVKVKAFDKKGKPFTIEAEGFLARALLHEIDHL 137
>gi|410610887|ref|ZP_11321992.1| peptide deformylase [Glaciecola psychrophila 170]
gi|410169598|dbj|GAC35881.1| peptide deformylase [Glaciecola psychrophila 170]
Length = 169
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD M +GIGL+A QV ++ QL+V + V E + +V +NP + + K I EEGC
Sbjct: 35 MFDTMRDENGIGLAATQVDVHKQLVVMD-VSENQDAP-MVFINPEITQKEGKTIS-EEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS P +A VER E + + A D G F++ L A QHE DHL+
Sbjct: 92 LSVPNNYAQVERAEKITVSALDKTGEHFTLEADGLLAICIQHELDHLK 139
>gi|395782233|ref|ZP_10462637.1| peptide deformylase [Bartonella rattimassiliensis 15908]
gi|395419172|gb|EJF85473.1| peptide deformylase [Bartonella rattimassiliensis 15908]
Length = 178
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVG--ERGEGEEIVLVNPRVNKYSNKMIPYEE 58
M MY G+GL+A Q+GI ++++V + G E + + +V++NP + S++ Y+E
Sbjct: 35 MLRTMYNAKGVGLAAIQIGIPLRMLVMDVSGNSEDNQKKPLVIINPEILWLSDERNIYQE 94
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
GCLS P A+VERP+ + I +D G + DL A QHE DHL
Sbjct: 95 GCLSIPDYFAEVERPKRLCIRYQDREGKHTEIEADDLLATCLQHEIDHL 143
>gi|440225369|ref|YP_007332460.1| peptide deformylase [Rhizobium tropici CIAT 899]
gi|440036880|gb|AGB69914.1| peptide deformylase [Rhizobium tropici CIAT 899]
Length = 171
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 58/107 (54%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E +V +NP + S++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRMLVIDVAREGEEKAPLVFINPEIVASSDERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP V + D NG L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPARVTVKHLDRNGKEQLTEAEGLLATCVQHEIDHL 141
>gi|108804305|ref|YP_644242.1| peptide deformylase [Rubrobacter xylanophilus DSM 9941]
gi|108765548|gb|ABG04430.1| peptide deformylase [Rubrobacter xylanophilus DSM 9941]
Length = 164
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 63/107 (58%), Gaps = 5/107 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ M + +G+GL+A QVG ++ V E +V+VNP + + S + EEGC
Sbjct: 34 MFETMREHEGVGLAANQVGRLKRIFVAEV-----EDRRLVVVNPAIEEASERTERAEEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG+ +VERP +V + ++++G+ + L ARV QHE DHL
Sbjct: 89 LSIPGVRVEVERPAAVVLTGQNLDGSPLRIEAEGLLARVLQHETDHL 135
>gi|194334376|ref|YP_002016236.1| peptide deformylase [Prosthecochloris aestuarii DSM 271]
gi|238693348|sp|B4S9B9.1|DEF_PROA2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|194312194|gb|ACF46589.1| peptide deformylase [Prosthecochloris aestuarii DSM 271]
Length = 186
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 66/111 (59%), Gaps = 7/111 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMV--FNPVGERGEGEEIVLVNPRV--NKYSNKMIPY 56
M + M GIGL+APQ+G++++L++ +PV E +V++NP + K N M
Sbjct: 34 MIESMRNASGIGLAAPQIGLSMRLLIVDLSPVQGYENAEPMVVINPHILAVKGYNAM--- 90
Query: 57 EEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
EEGCLS P IHADV RP S+++ R+ + S L ARV QHE DHL
Sbjct: 91 EEGCLSIPDIHADVVRPSSIQLKYRNEHFEERVDEFSALMARVLQHEIDHL 141
>gi|357024209|ref|ZP_09086370.1| peptide deformylase [Mesorhizobium amorphae CCNWGS0123]
gi|355543895|gb|EHH13010.1| peptide deformylase [Mesorhizobium amorphae CCNWGS0123]
Length = 176
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 60/107 (56%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY GIGL+A Q+G ++L+V + E V +NP + + S++ YEEGC
Sbjct: 35 MLDTMYDAPGIGLAAIQIGEPLRLLVIDLAKEDETPAPHVFINPEILESSDQRSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP SV++ D +G + L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPASVRVKYLDRDGKLQEMQAEGLMATCLQHEIDHL 141
>gi|114766695|ref|ZP_01445634.1| N-formylmethionyl tRNA deformylase [Pelagibaca bermudensis
HTCC2601]
gi|114541085|gb|EAU44140.1| N-formylmethionyl tRNA deformylase [Roseovarius sp. HTCC2601]
Length = 165
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 63/111 (56%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G GL+APQVG+ ++ V + + G+ +V ++P++ S++ +EGC
Sbjct: 34 MLETMYDAPGRGLAAPQVGVLKRVFVMDAGWKDGDMTPVVCIDPQILAVSDETAAGDEGC 93
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQVFV 111
LS PG+ A+V RP V++ D+NG R A V QHE+DHL V
Sbjct: 94 LSIPGVTANVRRPVWVRMAYTDLNGDRQERRFEGAEAIVAQHEYDHLDGLV 144
>gi|340363530|ref|ZP_08685860.1| peptide deformylase [Neisseria macacae ATCC 33926]
gi|339885675|gb|EGQ75382.1| peptide deformylase [Neisseria macacae ATCC 33926]
Length = 174
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + + + YEEGC
Sbjct: 42 MFETMYEARGIGLAATQVDVHERVVVMDLTEDRSEPR--VFINPVIVEKDGE-TTYEEGC 98
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PGI+ V R E VK++A + G +F++ L A QHE DHL VFV
Sbjct: 99 LSVPGIYDTVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFV 151
>gi|298370618|ref|ZP_06981933.1| peptide deformylase [Neisseria sp. oral taxon 014 str. F0314]
gi|298281228|gb|EFI22718.1| peptide deformylase [Neisseria sp. oral taxon 014 str. F0314]
Length = 167
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + + + YEEGC
Sbjct: 35 MFETMYEARGIGLAATQVDVHERVVVMDLTEDRSEPR--VFINPVIVEKDGET-TYEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PGI+ V R E VK++A + G +F++ L A QHE DHL VFV
Sbjct: 92 LSVPGIYDTVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFV 144
>gi|296284446|ref|ZP_06862444.1| peptide deformylase [Citromicrobium bathyomarinum JL354]
Length = 190
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 68/127 (53%), Gaps = 19/127 (14%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI-------------------VL 41
MF+ MY +GIGL+A QVG+ +++V + E + E I V
Sbjct: 37 MFETMYAANGIGLAAIQVGVPKRILVIDLQPEDPDAEPIECDHDGHKHTHPATKKEPRVF 96
Query: 42 VNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQ 101
+NP + + ++ Y+EGCLS P I+ADV+RP + + +D++G + ++ L A Q
Sbjct: 97 INPEILDPNEELATYQEGCLSVPDIYADVDRPATCTVRWKDLDGKEHTEAMEGLLATCIQ 156
Query: 102 HEFDHLQ 108
HE DHL+
Sbjct: 157 HEMDHLE 163
>gi|194099884|ref|YP_002003021.1| peptide deformylase [Neisseria gonorrhoeae NCCP11945]
gi|291042744|ref|ZP_06568485.1| peptide deformylase [Neisseria gonorrhoeae DGI2]
gi|293398236|ref|ZP_06642441.1| polypeptide deformylase [Neisseria gonorrhoeae F62]
gi|385336803|ref|YP_005890750.1| peptide deformylase [Neisseria gonorrhoeae TCDC-NG08107]
gi|193935174|gb|ACF30998.1| peptide deformylase [Neisseria gonorrhoeae NCCP11945]
gi|291013178|gb|EFE05144.1| peptide deformylase [Neisseria gonorrhoeae DGI2]
gi|291611499|gb|EFF40569.1| polypeptide deformylase [Neisseria gonorrhoeae F62]
gi|317165346|gb|ADV08887.1| peptide deformylase [Neisseria gonorrhoeae TCDC-NG08107]
Length = 181
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 68/113 (60%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY++ GIGL+A QV ++ +++V + +R E V +NP + + + YEEGC
Sbjct: 49 MFETMYESRGIGLAATQVDVHERVVVMDLTEDRSEPR--VFINPVIVEKDGE-TTYEEGC 105
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PGI+ V R E VK++A + G +F++ L A QHE DHL VFV
Sbjct: 106 LSVPGIYDAVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFV 158
>gi|182420425|ref|ZP_02951645.1| polypeptide deformylase [Clostridium butyricum 5521]
gi|237667734|ref|ZP_04527718.1| peptide deformylase [Clostridium butyricum E4 str. BoNT E BL5262]
gi|182375711|gb|EDT73311.1| polypeptide deformylase [Clostridium butyricum 5521]
gi|237656082|gb|EEP53638.1| peptide deformylase [Clostridium butyricum E4 str. BoNT E BL5262]
Length = 146
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 62/107 (57%), Gaps = 6/107 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY DG+GL+APQVGI +L V + G+G +V +NP + + S K I EEGC
Sbjct: 35 MLETMYDADGVGLAAPQVGILKRLFVIDI----GDGP-LVFINPEIIETSGKQID-EEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG +V RP V+ A + G F + +L AR HE+DHL
Sbjct: 89 LSLPGKMEEVMRPNYVRARALNEKGQEFEIEAEELLARAILHEYDHL 135
>gi|350552659|ref|ZP_08921855.1| Peptide deformylase [Thiorhodospira sibirica ATCC 700588]
gi|349793334|gb|EGZ47170.1| Peptide deformylase [Thiorhodospira sibirica ATCC 700588]
Length = 180
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 1/107 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A Q+ + +Q++V + E E I +NP + M P+EEGC
Sbjct: 35 MFETMYAAKGIGLAAVQINVPLQVIVMHLNKEGEENRPICFINPEIIHREGTM-PWEEGC 93
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+R E +++ A D G F ++ L QHE DHL
Sbjct: 94 LSVPGFYENVQRAERIRVRALDREGNPFELNADGLLGVCIQHEMDHL 140
>gi|163744872|ref|ZP_02152232.1| peptide deformylase [Oceanibulbus indolifex HEL-45]
gi|161381690|gb|EDQ06099.1| peptide deformylase [Oceanibulbus indolifex HEL-45]
Length = 172
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
M MY GIGL+APQVG+ +++V + V E GE +++ NP + S+ + YEEG
Sbjct: 34 MLATMYDAPGIGLAAPQVGVLSRVIVLDCVKEEGEAPRPLLMFNPEIVASSDDLNTYEEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P ADV RP V++ D +G L A QHE DHL
Sbjct: 94 CLSIPEQFADVTRPAEVEVRWLDRDGKEQREGFDGLWATCVQHEIDHL 141
>gi|392952183|ref|ZP_10317738.1| peptide deformylase [Hydrocarboniphaga effusa AP103]
gi|391861145|gb|EIT71673.1| peptide deformylase [Hydrocarboniphaga effusa AP103]
Length = 168
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY G+GL+A QVGI+ ++ V + G G+ + VL+NP + + S+K EEGC
Sbjct: 35 MFETMYAAPGVGLAATQVGIDQRIAVMD-AGAEGKPDPQVLINPVIVEASDKQ-EMEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + V+R +K+ A D NG+ + V + L A+ QHE DHL
Sbjct: 93 LSVPDVADKVQRYNKLKLKAFDRNGSPYEVEVEGLRAQAIQHEIDHL 139
>gi|59802191|ref|YP_208903.1| peptide deformylase [Neisseria gonorrhoeae FA 1090]
gi|240015128|ref|ZP_04722041.1| peptide deformylase [Neisseria gonorrhoeae DGI18]
gi|240017578|ref|ZP_04724118.1| peptide deformylase [Neisseria gonorrhoeae FA6140]
gi|268593743|ref|ZP_06127910.1| peptide deformylase [Neisseria gonorrhoeae 35/02]
gi|268597818|ref|ZP_06131985.1| peptide deformylase [Neisseria gonorrhoeae FA19]
gi|268602403|ref|ZP_06136570.1| peptide deformylase [Neisseria gonorrhoeae PID18]
gi|268604665|ref|ZP_06138832.1| polypeptide deformylase [Neisseria gonorrhoeae PID1]
gi|268683123|ref|ZP_06149985.1| polypeptide deformylase [Neisseria gonorrhoeae PID332]
gi|268687550|ref|ZP_06154412.1| polypeptide deformylase [Neisseria gonorrhoeae SK-93-1035]
gi|75507292|sp|Q5F5P6.1|DEF_NEIG1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|59719086|gb|AAW90491.1| putative polypeptide deformylase [Neisseria gonorrhoeae FA 1090]
gi|268547132|gb|EEZ42550.1| peptide deformylase [Neisseria gonorrhoeae 35/02]
gi|268551606|gb|EEZ46625.1| peptide deformylase [Neisseria gonorrhoeae FA19]
gi|268586534|gb|EEZ51210.1| peptide deformylase [Neisseria gonorrhoeae PID18]
gi|268588796|gb|EEZ53472.1| polypeptide deformylase [Neisseria gonorrhoeae PID1]
gi|268623407|gb|EEZ55807.1| polypeptide deformylase [Neisseria gonorrhoeae PID332]
gi|268627834|gb|EEZ60234.1| polypeptide deformylase [Neisseria gonorrhoeae SK-93-1035]
Length = 167
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 68/113 (60%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY++ GIGL+A QV ++ +++V + +R E V +NP + + + YEEGC
Sbjct: 35 MFETMYESRGIGLAATQVDVHERVVVMDLTEDRSEPR--VFINPVIVEKDGET-TYEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PGI+ V R E VK++A + G +F++ L A QHE DHL VFV
Sbjct: 92 LSVPGIYDAVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFV 144
>gi|428279167|ref|YP_005560902.1| peptide deformylase [Bacillus subtilis subsp. natto BEST195]
gi|291484124|dbj|BAI85199.1| peptide deformylase [Bacillus subtilis subsp. natto BEST195]
Length = 160
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 63/107 (58%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M + DG+GL+APQ+GI + V + +RG I LVNP + + S + E GC
Sbjct: 35 MYDTMLEMDGVGLAAPQIGILKRAAVVDIGDDRGR---IDLVNPEILERSGEQTGIE-GC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFPG++ DV+R + VK+ A + G F + AR QHE DHL
Sbjct: 91 LSFPGVYGDVKRADYVKVRAFNRQGKPFILEARGFLARAVQHEMDHL 137
>gi|270157753|ref|ZP_06186410.1| peptide deformylase [Legionella longbeachae D-4968]
gi|289163978|ref|YP_003454116.1| polypeptide deformylase [Legionella longbeachae NSW150]
gi|269989778|gb|EEZ96032.1| peptide deformylase [Legionella longbeachae D-4968]
gi|288857151|emb|CBJ10967.1| putative polypeptide deformylase [Legionella longbeachae NSW150]
Length = 170
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 61/107 (57%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY G+GL+APQ+GI ++L V + G++ ++V++NP + + +EEGC
Sbjct: 35 MFETMYAAHGVGLAAPQIGIGLRLSVIDIAGDKKN--QLVIINPEIIASEGEK-KFEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + V R E V + A D G F + L A QHE DH+
Sbjct: 92 LSVPGAYDTVIRAEKVIVKALDRTGKPFEIQADGLLAECLQHEIDHM 138
>gi|90415408|ref|ZP_01223342.1| polypeptide deformylase [gamma proteobacterium HTCC2207]
gi|90332731|gb|EAS47901.1| polypeptide deformylase [marine gamma proteobacterium HTCC2207]
Length = 168
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 60/108 (55%), Gaps = 2/108 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD M GIGL+A Q+ ++++++V N +GE G V +NP + + PYEEGC
Sbjct: 35 MFDTMKDAQGIGLAATQIDVHLRVIVMN-LGEDDIGPR-VFINPEIEPLDESVDPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG + V+RP V I A D G F L A QHE DHL+
Sbjct: 93 LSVPGFYEKVDRPAHVVIRALDGEGKAFKEEARGLLAVCIQHEIDHLE 140
>gi|229526222|ref|ZP_04415626.1| peptide deformylase [Vibrio cholerae bv. albensis VL426]
gi|254286639|ref|ZP_04961594.1| polypeptide deformylase [Vibrio cholerae AM-19226]
gi|150423223|gb|EDN15169.1| polypeptide deformylase [Vibrio cholerae AM-19226]
gi|229336380|gb|EEO01398.1| peptide deformylase [Vibrio cholerae bv. albensis VL426]
Length = 168
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 65/108 (60%), Gaps = 4/108 (3%)
Query: 1 MFDVMYKTD-GIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
+ D +Y TD GIGL+APQVG ++V + R + +VL+NP+V +NK + +EG
Sbjct: 34 LLDTLYATDNGIGLAAPQVGREEAIVVIDLSDNRDQ--PLVLINPKVVSGNNKEMG-QEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P +ADVER SV ++A D G + SD A V QHE DHL
Sbjct: 91 CLSVPDYYADVERYTSVVVEALDREGKPLRIETSDFLAIVMQHEIDHL 138
>gi|145220094|ref|YP_001130803.1| peptide deformylase [Chlorobium phaeovibrioides DSM 265]
gi|189083076|sp|A4SFP2.1|DEF_PROVI RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|145206258|gb|ABP37301.1| peptide deformylase [Chlorobium phaeovibrioides DSM 265]
Length = 190
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 64/109 (58%), Gaps = 3/109 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERG--EGEEIVLVNPRVNKYSNKMIPYEE 58
MF+ M GIGL+APQVG +++L+V + + + +V++NP + K + EE
Sbjct: 34 MFESMENASGIGLAAPQVGHSLRLLVLDISCMKSYEDVAPMVVINPHILSVKGKNL-MEE 92
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
GCLS PG+ DV+RP S+ + RD N + S + ARV QHE DHL
Sbjct: 93 GCLSVPGVQGDVQRPSSITLKYRDRNFLEQTEEFSGMLARVLQHEIDHL 141
>gi|238926274|ref|ZP_04658034.1| peptide deformylase [Selenomonas flueggei ATCC 43531]
gi|238885954|gb|EEQ49592.1| peptide deformylase [Selenomonas flueggei ATCC 43531]
Length = 160
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY DG+GL+APQVG +++++V + E G E LVNP + + EGC
Sbjct: 39 MAETMYAADGVGLAAPQVGKSLRIVVIDVQDEHGLLE---LVNPVITMREGS-VTESEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS P ++ DVER E V ++ D R +++ L AR QHE DHL+
Sbjct: 95 LSVPKVYGDVERAERVTVEYTDRRSRRRTLTAEGLLARCIQHECDHLE 142
>gi|126738021|ref|ZP_01753742.1| peptide deformylase [Roseobacter sp. SK209-2-6]
gi|126720518|gb|EBA17223.1| peptide deformylase [Roseobacter sp. SK209-2-6]
Length = 172
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGE-GEEIVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQ+GI +L+V + E G G+ +V+ NP + S + YEEG
Sbjct: 34 MLETMYAAPGIGLAAPQIGIMQRLIVLDCEKEEGSSGKPLVMFNPEILASSEETNVYEEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P A+V RP+ V + D +G S + L A QHE DHL
Sbjct: 94 CLSIPEQFAEVTRPKVVDVRWIDRDGNEQSETFDGLWATCVQHEIDHL 141
>gi|116053739|ref|YP_788174.1| peptide deformylase [Pseudomonas aeruginosa UCBPP-PA14]
gi|313111460|ref|ZP_07797261.1| polypeptide deformylase [Pseudomonas aeruginosa 39016]
gi|355650971|ref|ZP_09056399.1| peptide deformylase [Pseudomonas sp. 2_1_26]
gi|386062991|ref|YP_005978295.1| peptide deformylase [Pseudomonas aeruginosa NCGM2.S1]
gi|421177852|ref|ZP_15635497.1| peptide deformylase [Pseudomonas aeruginosa CI27]
gi|115588960|gb|ABJ14975.1| polypeptide deformylase [Pseudomonas aeruginosa UCBPP-PA14]
gi|310883763|gb|EFQ42357.1| polypeptide deformylase [Pseudomonas aeruginosa 39016]
gi|348031550|dbj|BAK86910.1| peptide deformylase [Pseudomonas aeruginosa NCGM2.S1]
gi|354826495|gb|EHF10707.1| peptide deformylase [Pseudomonas sp. 2_1_26]
gi|404528714|gb|EKA38777.1| peptide deformylase [Pseudomonas aeruginosa CI27]
Length = 168
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + ++ E V +NP + +M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDKSEPR--VFINPEFEPLTEEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ V+I A D +G F L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHL 139
>gi|451946455|ref|YP_007467050.1| peptide deformylase [Desulfocapsa sulfexigens DSM 10523]
gi|451905803|gb|AGF77397.1| peptide deformylase [Desulfocapsa sulfexigens DSM 10523]
Length = 198
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+APQ+G +VQL+V N + E +V+VNP + + + I EEGC
Sbjct: 64 MIETMYDAPGVGLAAPQIGESVQLIVVNAARDPDVQESMVMVNPEITEREGEQID-EEGC 122
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS + + V+R + + + +DI G + +++ D A V QHE DHL
Sbjct: 123 LSVIDLTSSVKRSKKITVCYQDIRGGKQELTVEDRFAVVLQHEIDHL 169
>gi|440232805|ref|YP_007346598.1| peptide deformylase [Serratia marcescens FGI94]
gi|440054510|gb|AGB84413.1| peptide deformylase [Serratia marcescens FGI94]
Length = 172
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 62/107 (57%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY +GIGL+A QV I+ +++V + R + +VL+NP + + S + EEGC
Sbjct: 35 MFETMYAEEGIGLAATQVDIHQRIIVIDVSETRDQ--RLVLINPELLEKSGET-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P A V R E VKI A D NG F + DL A QHE DHL
Sbjct: 92 LSIPEQRALVPRAEKVKIRALDYNGKTFELEADDLLAICIQHEMDHL 138
>gi|379729207|ref|YP_005321403.1| peptide deformylase [Saprospira grandis str. Lewin]
gi|424842875|ref|ZP_18267500.1| peptide deformylase [Saprospira grandis DSM 2844]
gi|378574818|gb|AFC23819.1| peptide deformylase [Saprospira grandis str. Lewin]
gi|395321073|gb|EJF53994.1| peptide deformylase [Saprospira grandis DSM 2844]
Length = 185
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 66/115 (57%), Gaps = 9/115 (7%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPV-------GERGEGEEIVLVNPRVNKYSNKM 53
M++ MY G+G++APQVG +++L + + + GE+G E V +NP + + + K
Sbjct: 34 MWETMYHAGGMGIAAPQVGQSLRLFLVDTLQLDEEKNGEKGLKE--VFINPIIIEEAGKP 91
Query: 54 IPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
YEEGCLS P IH V+R V+I+ D N L ARV QHE+DH++
Sbjct: 92 WTYEEGCLSIPNIHGKVKRKAQVRIEYYDQNFELKEKVFDGLNARVIQHEYDHIE 146
>gi|313667406|ref|YP_004047690.1| polypeptide deformylase [Neisseria lactamica 020-06]
gi|313004868|emb|CBN86294.1| polypeptide deformylase [Neisseria lactamica 020-06]
Length = 167
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + + + YEEGC
Sbjct: 35 MFETMYEARGIGLAATQVDVHERVVVMDLTEDRSEPR--VFINPVIVEKDGET-TYEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PGI+ V R E VK++A + G +F++ L A QHE DHL VFV
Sbjct: 92 LSVPGIYDTVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFV 144
>gi|354605407|ref|ZP_09023395.1| polypeptide deformylase [Alistipes indistinctus YIT 12060]
gi|353346949|gb|EHB91227.1| polypeptide deformylase [Alistipes indistinctus YIT 12060]
Length = 185
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 59/112 (52%), Gaps = 5/112 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI-----VLVNPRVNKYSNKMIP 55
M++ MY DG+GL+APQVG ++++ V + E E+ +N + +
Sbjct: 34 MWETMYDADGVGLAAPQVGKSIRMFVVDASPWAEEEPELADFKKTFINAEIYERFGDEWR 93
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
+ EGCLS PGIH DV RP +KI D N S ARV QHE+DHL
Sbjct: 94 FSEGCLSLPGIHEDVMRPSGIKIRYVDENFVEHDEEYSGYAARVIQHEYDHL 145
>gi|258545465|ref|ZP_05705699.1| peptide deformylase [Cardiobacterium hominis ATCC 15826]
gi|258519298|gb|EEV88157.1| peptide deformylase [Cardiobacterium hominis ATCC 15826]
Length = 184
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 64/119 (53%), Gaps = 13/119 (10%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE------------IVLVNPRVNK 48
MF MY+ GIGL+A QV I+ +++V + V ER E +E +VL+NP +
Sbjct: 35 MFATMYEAHGIGLAATQVNIHQRIVVMD-VPERREDDETETPDAPIPHTKLVLINPEIIA 93
Query: 49 YSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
S + ++EGCLS PG ADVERP ++ D+ G+R L QHE DHL
Sbjct: 94 TSEETASWQEGCLSLPGQFADVERPAKIRYAYYDLGGSRCEGEAEGLLGVCIQHEIDHL 152
>gi|71279368|ref|YP_266802.1| polypeptide deformylase [Colwellia psychrerythraea 34H]
gi|71145108|gb|AAZ25581.1| polypeptide deformylase [Colwellia psychrerythraea 34H]
Length = 171
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 65/108 (60%), Gaps = 2/108 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY+ +G+GL+A QV I+ +++V + + I+ +NP + SN+ EEGC
Sbjct: 35 MLATMYEENGVGLAATQVDIHQRIVVMD--TSEDNDQPIIFINPEIIATSNETSINEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG +A V+R ++ + A D +G FS++ ++L + QHE DHL+
Sbjct: 93 LSVPGTYAKVDRHDACTVKALDRHGKEFSLNATELQSICIQHELDHLK 140
>gi|393760454|ref|ZP_10349264.1| peptide deformylase [Alcaligenes faecalis subsp. faecalis NCIB
8687]
gi|393161311|gb|EJC61375.1| peptide deformylase [Alcaligenes faecalis subsp. faecalis NCIB
8687]
Length = 172
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 66/113 (58%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+A QV ++ +++V + V E G E +VL+NP + S ++ YEEGC
Sbjct: 35 MAETMYDAPGVGLAATQVDVHERVVVID-VSESG-NELLVLINPEITWKSEELKVYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LS P + VER S++ A+D NG + L A QHE DHL +VFV
Sbjct: 93 LSVPDTYDKVERAASIRFKAQDENGQWYEKEADGLLAVCVQHELDHLDGKVFV 145
>gi|381403013|ref|ZP_09927697.1| peptide deformylase [Pantoea sp. Sc1]
gi|380736212|gb|EIB97275.1| peptide deformylase [Pantoea sp. Sc1]
Length = 170
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 66/108 (61%), Gaps = 3/108 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY +GIGL+A QV I+ +++V + V E E E +VL+NP + + S + EEGC
Sbjct: 35 MFETMYAEEGIGLAATQVDIHQRIIVID-VSESRE-ERLVLINPELLEKSGET-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS P A V R E VK+ A D +G F + SDL A QHE DHL+
Sbjct: 92 LSIPEQRAFVPRAERVKVRALDRDGNSFELEASDLLAICIQHEIDHLE 139
>gi|251793801|ref|YP_003008533.1| peptide deformylase [Aggregatibacter aphrophilus NJ8700]
gi|422337241|ref|ZP_16418213.1| peptide deformylase [Aggregatibacter aphrophilus F0387]
gi|247535200|gb|ACS98446.1| peptide deformylase [Aggregatibacter aphrophilus NJ8700]
gi|353345793|gb|EHB90084.1| peptide deformylase [Aggregatibacter aphrophilus F0387]
Length = 170
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 63/107 (58%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+APQV I +++ + G++ ++VL+NP + + S EEGC
Sbjct: 35 MFDTMYQEEGIGLAAPQVDILQRIITIDIEGDKQN--QLVLINPEILE-SEGETGIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG A V R E V + A D +G F++ L A QHE DHL
Sbjct: 92 LSIPGFRALVPRKEKVTVRALDRDGKEFTLKADRLLAICIQHEIDHL 138
>gi|448237328|ref|YP_007401386.1| peptide deformylase [Geobacillus sp. GHH01]
gi|445206170|gb|AGE21635.1| peptide deformylase [Geobacillus sp. GHH01]
Length = 157
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 64/108 (59%), Gaps = 4/108 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M++ M DG+GL+APQ+G+ Q+ V + E G I L+NP V + + + E GC
Sbjct: 35 MYETMLAADGVGLAAPQIGVAKQIAVIDVGDEHGR---IELINPVVIEARGEQVDVE-GC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LSFPG+ +V R + VK+ A++ G F++S + AR QHE DHL
Sbjct: 91 LSFPGLFGEVPRAKFVKVRAQNRRGRPFTLSATGFLARALQHEIDHLH 138
>gi|33357406|pdb|1N5N|A Chain A, Crystal Structure Of Peptide Deformylase From Pseudomonas
Aeruginosa
gi|33357407|pdb|1N5N|B Chain B, Crystal Structure Of Peptide Deformylase From Pseudomonas
Aeruginosa
gi|47168958|pdb|1S17|A Chain A, Identification Of Novel Potent Bicyclic Peptide
Deformylase Inhibitors
gi|47168959|pdb|1S17|B Chain B, Identification Of Novel Potent Bicyclic Peptide
Deformylase Inhibitors
Length = 180
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + ++ E V +NP + +M Y+EGC
Sbjct: 47 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDKSEPR--VFINPEFEPLTEEMDQYQEGC 104
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ V+I A D +G F L A QHE DHL
Sbjct: 105 LSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHL 151
>gi|304437066|ref|ZP_07397029.1| peptide deformylase [Selenomonas sp. oral taxon 149 str. 67H29BP]
gi|304370017|gb|EFM23679.1| peptide deformylase [Selenomonas sp. oral taxon 149 str. 67H29BP]
Length = 160
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY DG+GL+APQVG +++++V + E G E LVNP + + EGC
Sbjct: 39 MAETMYAADGVGLAAPQVGKSLRIVVIDVQDEHGLLE---LVNPVITMREGS-VTESEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS P ++ DVER E V ++ D R +++ L AR QHE DHL+
Sbjct: 95 LSVPKVYGDVERAERVTVEYTDRRSRRRTLTAEGLLARCIQHECDHLE 142
>gi|402829483|ref|ZP_10878359.1| peptide deformylase [Slackia sp. CM382]
gi|402284464|gb|EJU32967.1| peptide deformylase [Slackia sp. CM382]
Length = 182
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 58/112 (51%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +G GL+APQVG+ +L+V + + G I L+NP V + + EEGC
Sbjct: 37 MAKTMYADNGCGLAAPQVGVLKRLIVIDCDQDSGAKNPITLLNPTVIETRGPEVVEEEGC 96
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112
LS PGI + RP + D+NG + + L AR QHE DHL L
Sbjct: 97 LSVPGITVPIRRPAYAIVRYTDLNGEDWIIEGDGLLARCLQHEIDHLNGITL 148
>gi|452126449|ref|ZP_21939032.1| peptide deformylase [Bordetella holmesii F627]
gi|452129822|ref|ZP_21942395.1| peptide deformylase [Bordetella holmesii H558]
gi|451921544|gb|EMD71689.1| peptide deformylase [Bordetella holmesii F627]
gi|451922682|gb|EMD72826.1| peptide deformylase [Bordetella holmesii H558]
Length = 177
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 62/112 (55%), Gaps = 5/112 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVF----NPVGERGEG-EEIVLVNPRVNKYSNKMIP 55
MF+ M +G+GL+APQ+G+++QL++F NP + VL NP + S++M
Sbjct: 35 MFETMIAANGVGLAAPQIGVDLQLVIFGFERNPRYPDAPAVPQTVLCNPVITPLSDEMED 94
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
EGCLS PG+ V R ++ D +G R SD ARV QHE DHL
Sbjct: 95 GWEGCLSVPGLRGRVPRYRHIRYQGSDPDGQRIDREASDFHARVVQHECDHL 146
>gi|410091109|ref|ZP_11287686.1| peptide deformylase [Pseudomonas viridiflava UASWS0038]
gi|409761677|gb|EKN46736.1| peptide deformylase [Pseudomonas viridiflava UASWS0038]
Length = 168
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSEPR--VFINPEIEMLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ V++ A +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVRVKALGRDGEPYELVAEGLLAICIQHECDHL 139
>gi|297250811|ref|ZP_06934289.1| peptide deformylase [Neisseria polysaccharea ATCC 43768]
gi|296837967|gb|EFH21905.1| peptide deformylase [Neisseria polysaccharea ATCC 43768]
Length = 181
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + + + YEEGC
Sbjct: 49 MFETMYEARGIGLAATQVDVHERVVVMDLTEDRSEPR--VFINPVIVEKDGE-TTYEEGC 105
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PGI+ V R E VK++A + G +F++ L A QHE DHL VFV
Sbjct: 106 LSVPGIYDTVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFV 158
>gi|255067832|ref|ZP_05319687.1| peptide deformylase [Neisseria sicca ATCC 29256]
gi|255047923|gb|EET43387.1| peptide deformylase [Neisseria sicca ATCC 29256]
Length = 193
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + + + YEEGC
Sbjct: 61 MFETMYEARGIGLAATQVDVHERVVVMDLTEDRSEPR--VFINPVIVEKDGE-TTYEEGC 117
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PGI+ V R E VK++A + G +F++ L A QHE DHL VFV
Sbjct: 118 LSVPGIYDTVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFV 170
>gi|407776883|ref|ZP_11124155.1| peptide deformylase [Nitratireductor pacificus pht-3B]
gi|407301579|gb|EKF20699.1| peptide deformylase [Nitratireductor pacificus pht-3B]
Length = 176
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 63/107 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QVG ++++V + + E +V++NP + S + +EEGC
Sbjct: 35 MLETMYDAPGIGLAAIQVGEPLRMLVIDVADKDEEPAPLVVINPEIVARSTALNVHEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP +V ++ D +G + ++ L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPAAVTVNFTDRDGKQQTIEADGLLATCLQHEIDHL 141
>gi|269215460|ref|ZP_06159314.1| peptide deformylase [Slackia exigua ATCC 700122]
gi|269130947|gb|EEZ62022.1| peptide deformylase [Slackia exigua ATCC 700122]
Length = 187
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 58/112 (51%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +G GL+APQVG+ +L+V + + G I L+NP V + + EEGC
Sbjct: 42 MAKTMYADNGCGLAAPQVGVLKRLIVIDCDQDSGAKNPITLLNPTVIETRGPEVVEEEGC 101
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112
LS PGI + RP + D+NG + + L AR QHE DHL L
Sbjct: 102 LSVPGITVPIRRPAYAIVRYTDLNGEDWIIEGDGLLARCLQHEIDHLNGITL 153
>gi|240122199|ref|ZP_04735161.1| peptide deformylase [Neisseria gonorrhoeae PID24-1]
gi|254494753|ref|ZP_05107924.1| polypeptide deformylase [Neisseria gonorrhoeae 1291]
gi|268600061|ref|ZP_06134228.1| polypeptide deformylase [Neisseria gonorrhoeae MS11]
gi|268683213|ref|ZP_06150075.1| polypeptide deformylase [Neisseria gonorrhoeae SK-92-679]
gi|226513793|gb|EEH63138.1| polypeptide deformylase [Neisseria gonorrhoeae 1291]
gi|268584192|gb|EEZ48868.1| polypeptide deformylase [Neisseria gonorrhoeae MS11]
gi|268623497|gb|EEZ55897.1| polypeptide deformylase [Neisseria gonorrhoeae SK-92-679]
Length = 161
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 68/113 (60%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY++ GIGL+A QV ++ +++V + +R E V +NP + + + YEEGC
Sbjct: 29 MFETMYESRGIGLAATQVDVHERVVVMDLTEDRSEPR--VFINPVIVEKDGE-TTYEEGC 85
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PGI+ V R E VK++A + G +F++ L A QHE DHL VFV
Sbjct: 86 LSVPGIYDAVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFV 138
>gi|139436889|ref|ZP_01771049.1| Hypothetical protein COLAER_00020 [Collinsella aerofaciens ATCC
25986]
gi|133776536|gb|EBA40356.1| peptide deformylase [Collinsella aerofaciens ATCC 25986]
Length = 180
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 68/111 (61%), Gaps = 4/111 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN-PVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
M +M++ G GL+APQ+G +QL+ + ++ + + VL+NP + + S+ ++P+ EG
Sbjct: 37 MKKIMFENGGCGLAAPQIGELIQLVTIDCDYSDKNDYDPYVLINPVIVEQSDHLVPFSEG 96
Query: 60 CLSFPGIHADVERPESVKIDARDI--NGARFSVSLSDLPARVFQHEFDHLQ 108
CLS PGI ++ERP+ V ++A D+ N R+ + DL QHE DHL
Sbjct: 97 CLSIPGISCEIERPDHVVVEAYDLDANLIRYEAT-GDLFCVCLQHEIDHLH 146
>gi|27904914|ref|NP_778040.1| polypeptide deformylase [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
gi|29611708|sp|P59493.1|DEF_BUCBP RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|27904312|gb|AAO27145.1| polypeptide deformylase [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
Length = 160
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 61/107 (57%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY +GIGL+A QV I +Q++V + + E +VL+NP++ K S + +EGC
Sbjct: 35 MFDTMYYENGIGLAATQVNIPLQIIVIDKIEELNH--PLVLINPKITKRSG-LTSIQEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P A++ R + + + A + G R + S + QHE DHL
Sbjct: 92 LSIPNYQAEISRSKKITVTALNYFGKRIKLKTSSTLSICIQHEIDHL 138
>gi|433506162|ref|ZP_20463081.1| peptide deformylase [Neisseria meningitidis 9757]
gi|432244178|gb|ELK99673.1| peptide deformylase [Neisseria meningitidis 9757]
Length = 167
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 68/113 (60%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY++ G+GL+A QV ++ +++V + +R E V +NP + + + YEEGC
Sbjct: 35 MFETMYESRGVGLAATQVDVHERVVVMDLTEDRSEPR--VFINPVIVEKDGET-TYEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PGI+ V R E VK++A + G +F++ L A QHE DHL VFV
Sbjct: 92 LSVPGIYDTVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFV 144
>gi|39933698|ref|NP_945974.1| peptide deformylase [Rhodopseudomonas palustris CGA009]
gi|192289055|ref|YP_001989660.1| peptide deformylase [Rhodopseudomonas palustris TIE-1]
gi|81698398|sp|Q6NC51.1|DEF_RHOPA RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|229487564|sp|B3QCH1.1|DEF_RHOPT RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|39647544|emb|CAE26065.1| putative N-formylmethionylaminoacyl-tRNA deformylase
[Rhodopseudomonas palustris CGA009]
gi|192282804|gb|ACE99184.1| peptide deformylase [Rhodopseudomonas palustris TIE-1]
Length = 175
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE--IVLVNPRVNKYSNKMIPYEE 58
MF+ MY+ GIGL+A Q+ V+L+ + V + G+G+ +NP + S++M YEE
Sbjct: 35 MFESMYEAPGIGLAAIQIAEPVRLITMDIVRKEGDGKSDPRAFINPEIVGASSEMNVYEE 94
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
GCLS P +A+VERP++V+I D++G L A QHE DHL
Sbjct: 95 GCLSIPEYYAEVERPKTVRIRYTDLDGNVKEEDADGLFATCIQHEIDHL 143
>gi|27367269|ref|NP_762796.1| peptide deformylase [Vibrio vulnificus CMCP6]
gi|320159078|ref|YP_004191456.1| peptide deformylase [Vibrio vulnificus MO6-24/O]
gi|31076649|sp|Q8D5P5.1|DEF2_VIBVU RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
Full=Polypeptide deformylase 2
gi|27358838|gb|AAO07786.1| peptide deformylase [Vibrio vulnificus CMCP6]
gi|319934390|gb|ADV89253.1| peptide deformylase [Vibrio vulnificus MO6-24/O]
Length = 168
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 67/108 (62%), Gaps = 4/108 (3%)
Query: 1 MFDVMYKTD-GIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
+ + +Y+TD G+GL+APQVG ++V + R E +VLVNP+V SNK + +EG
Sbjct: 34 LLETLYETDNGVGLAAPQVGREEAIVVIDLSENRDEP--LVLVNPKVVSGSNKEMG-QEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS P +ADVER SV ++A D +G + S+ A V QHE DHL
Sbjct: 91 CLSVPDYYADVERYTSVVVEALDRDGKPLRIETSEFLAIVMQHEIDHL 138
>gi|188585959|ref|YP_001917504.1| peptide deformylase [Natranaerobius thermophilus JW/NM-WN-LF]
gi|229487487|sp|B2A2K1.1|DEF_NATTJ RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|179350646|gb|ACB84916.1| peptide deformylase [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 156
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 60/107 (56%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY+ +GIGL+APQ+GI+ +++V + GE E L+NP + S++ EGC
Sbjct: 35 MLDTMYEAEGIGLAAPQIGISKRVIVVDI----GEDEIYQLINPEIVDTSDEQEKALEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS+PG+ V RP V + A + + L AR QHE DHL
Sbjct: 91 LSYPGLQGRVTRPVKVTVKALNPQEEEMIIEAEGLLARALQHEIDHL 137
>gi|227115518|ref|ZP_03829174.1| peptide deformylase [Pectobacterium carotovorum subsp. brasiliensis
PBR1692]
Length = 170
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 63/107 (58%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+A QV I+ +++V + ER + +VL+NP + + S EEGC
Sbjct: 35 MFDTMYEEEGIGLAATQVDIHQRIIVIDVSEERDQ--RLVLINPELIEKSGDT-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P A V R E VK+ A D G F + S+L A QHE DHL
Sbjct: 92 LSIPETRALVPRAEHVKVRALDREGKPFELEASELLAICIQHEMDHL 138
>gi|319790017|ref|YP_004151650.1| peptide deformylase [Thermovibrio ammonificans HB-1]
gi|317114519|gb|ADU97009.1| peptide deformylase [Thermovibrio ammonificans HB-1]
Length = 177
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 68/109 (62%), Gaps = 3/109 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN-PVGERGEGEE-IVLVNPRVNKYSNKMIPYEE 58
MF+ MYK G+GL+A QVG+ ++++ + G +G+ IVLVNP + +++ EE
Sbjct: 33 MFETMYKRGGVGLAANQVGVLKRVLILDLKAGTEEQGKNPIVLVNPEIVASEGEVVK-EE 91
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
GCLS PG++ V+R + VK+ A++++G + L AR QHE DHL
Sbjct: 92 GCLSLPGLYRKVKRAQWVKVKAQNLDGEEIEIEGEGLLARALQHEIDHL 140
>gi|262341227|ref|YP_003284082.1| peptide deformylase [Blattabacterium sp. (Blattella germanica) str.
Bge]
gi|262272564|gb|ACY40472.1| peptide deformylase [Blattabacterium sp. (Blattella germanica) str.
Bge]
Length = 171
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ +++ GIGL+APQ+G N++L + G+ +E V +N ++ K K + EGC
Sbjct: 36 MFETIHQAKGIGLAAPQIGKNIRLFIVETPYLDGKYKE-VFINAKILKIHGKEYKFNEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PGI V+R +V I+ D N + +L+ + ARV HE+DHL
Sbjct: 95 LSIPGIMGYVKRKSNVLIEYYDHNWKKQKKTLTGICARVILHEYDHL 141
>gi|409097881|ref|ZP_11217905.1| peptide deformylase [Pedobacter agri PB92]
Length = 186
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 68/111 (61%), Gaps = 4/111 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGE---EIVLVNPRVNKYSNKMIPYE 57
MFD MY +G+GL+APQ+G+ ++L + + GE +G + V +N ++ + + + +
Sbjct: 34 MFDTMYYANGVGLAAPQIGLPIRLFIVD-TGEEEDGTPGYKRVFINAQIIEETGEPWSFN 92
Query: 58 EGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
EGCLS P I ++ R ++K++ D N + + LPARV QHE+DH++
Sbjct: 93 EGCLSIPDIRENIMRKPNIKVNFFDENWVEHTEDVDGLPARVIQHEYDHIE 143
>gi|397662433|ref|YP_006503133.1| peptide deformylase [Taylorella equigenitalis ATCC 35865]
gi|394350612|gb|AFN36526.1| peptide deformylase [Taylorella equigenitalis ATCC 35865]
Length = 169
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 67/113 (59%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +G+GL+A QV I+ +++V + ER + +VL+NP + S + + +EEGC
Sbjct: 35 MAETMYAANGVGLAATQVDIHKRIVVIDVSEERNDL--LVLINPEIIGISEEKVIHEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LS P I+ +VER V++ A D NG F L A QHE DHL +VFV
Sbjct: 93 LSVPMIYDNVERFSEVRVKALDQNGNAFEFKADGLLAICVQHELDHLMGKVFV 145
>gi|419795997|ref|ZP_14321571.1| peptide deformylase [Neisseria sicca VK64]
gi|385699950|gb|EIG30213.1| peptide deformylase [Neisseria sicca VK64]
Length = 193
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + + + YEEGC
Sbjct: 61 MFETMYEARGIGLAATQVDVHERVVVMDLTEDRSEPR--VFINPVIIEKDGE-TTYEEGC 117
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PGI+ V R E VK++A + G +F++ L A QHE DHL VFV
Sbjct: 118 LSVPGIYDTVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFV 170
>gi|402846702|ref|ZP_10895011.1| peptide deformylase [Porphyromonas sp. oral taxon 279 str. F0450]
gi|402267394|gb|EJU16789.1| peptide deformylase [Porphyromonas sp. oral taxon 279 str. F0450]
Length = 188
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 66/113 (58%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGE---RGEGEEIVLVNPRVNKYSNKMIP 55
M++ MY +DGIGL+APQ+G ++L V + P+ E +G + +N R+ + S +
Sbjct: 34 MWETMYFSDGIGLAAPQIGRAIRLFVIDADPMAETFPECKGLKQTFINARIVESSEDTLA 93
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
EGCLS PGI+ V RP ++ I+ D + + + ARV QHE+DH++
Sbjct: 94 ENEGCLSIPGINEKVTRPATITIEYLDADFQPHRETYTGFAARVIQHEYDHIE 146
>gi|315635057|ref|ZP_07890338.1| peptide deformylase [Aggregatibacter segnis ATCC 33393]
gi|315476319|gb|EFU67070.1| peptide deformylase [Aggregatibacter segnis ATCC 33393]
Length = 170
Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 62/107 (57%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+APQV I +++ + G++ ++VL+NP + + EEGC
Sbjct: 35 MFDTMYQEEGIGLAAPQVDILQRIITIDIEGDKQN--QLVLINPEILDAEGET-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG A V R E V + A D +G F++ L A QHE DHL
Sbjct: 92 LSIPGFRALVPRKEKVTVKALDRDGKEFTLKADGLLAICIQHEIDHL 138
>gi|260583339|ref|ZP_05851112.1| peptide deformylase [Haemophilus influenzae NT127]
gi|260093610|gb|EEW77525.1| peptide deformylase [Haemophilus influenzae NT127]
Length = 169
Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 61/107 (57%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ GIGL+APQV I +++ + G++ + VL+NP + S EEGC
Sbjct: 35 MFDTMYQEKGIGLAAPQVDILQRIITIDVEGDKQN--QFVLINPEI-LASEGETGIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG A V R E VK+ A D +G F++ L A QHE DHL
Sbjct: 92 LSIPGFRALVPRKEKVKVRALDRDGKEFTLDADGLLAICIQHEIDHL 138
>gi|397685166|ref|YP_006522485.1| peptide deformylase [Pseudomonas stutzeri DSM 10701]
gi|395806722|gb|AFN76127.1| peptide deformylase [Pseudomonas stutzeri DSM 10701]
Length = 168
Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++ +++V + ++ E V +NP +++M Y+EGC
Sbjct: 35 MFETMYDAPGIGLAATQVNVHRRVVVMDLSEDKSEPR--VFINPEFEFLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ V++ A D +G F + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVRVKALDRDGQPFELIAEGLLAVCIQHECDHL 139
>gi|389808842|ref|ZP_10204978.1| peptide deformylase [Rhodanobacter thiooxydans LCS2]
gi|388442425|gb|EIL98621.1| peptide deformylase [Rhodanobacter thiooxydans LCS2]
Length = 169
Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY +G+GL+A QV ++ +++V + ER + +VL+N + + Y+EGC
Sbjct: 35 MFETMYAANGVGLAATQVNVHQRVLVIDMSEERNQ--PLVLINAEIVAKDGAQV-YQEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LSFPG++ADV R VK+ A+D +G F A QHE DHL+ VFV
Sbjct: 92 LSFPGLYADVTRALKVKVKAQDPDGKDFVYEAEGPLAVAVQHEMDHLEGKVFV 144
>gi|334132225|ref|ZP_08505986.1| Peptide deformylase, PDF [Methyloversatilis universalis FAM5]
gi|333442871|gb|EGK70837.1| Peptide deformylase, PDF [Methyloversatilis universalis FAM5]
Length = 167
Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 66/113 (58%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QV ++ Q++V + + E G I L+NPR+ + + + YEEGC
Sbjct: 35 MAETMYAAPGIGLAATQVDVHKQVIVID-ISEDKSGL-ITLINPRIVERDGEQV-YEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PGI+ V R E VK+ ++G+ + L A QHE DHLQ VFV
Sbjct: 92 LSVPGIYDKVTRAEHVKVRTLTLDGSETEIDAHGLLAVCIQHEMDHLQGKVFV 144
>gi|332799422|ref|YP_004460921.1| peptide deformylase [Tepidanaerobacter acetatoxydans Re1]
gi|332697157|gb|AEE91614.1| Peptide deformylase [Tepidanaerobacter acetatoxydans Re1]
Length = 154
Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 64/108 (59%), Gaps = 6/108 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + M +G+GL+APQVGI +++V + GEG IVLVNP + + ++I EGC
Sbjct: 35 MLETMMNANGVGLAAPQVGILKRVVVIDV----GEGP-IVLVNPEIVESKGEVIE-PEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PGI +V RP VK+ A+D G + DL AR HE DHL+
Sbjct: 89 LSIPGILGEVPRPSRVKVKAQDKWGKYIEIEGEDLLARALCHEIDHLE 136
>gi|124007536|ref|ZP_01692241.1| peptide deformylase [Microscilla marina ATCC 23134]
gi|123987019|gb|EAY26775.1| peptide deformylase [Microscilla marina ATCC 23134]
Length = 183
Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNP--VGERGEGEEIVLVNPRVNKYSNKMIPYEE 58
MF+ MY+ G+GL+APQ+G +++L V +P + E + ++ +NP + + +EE
Sbjct: 33 MFETMYEAHGVGLAAPQIGKSLRLFVIDPEPMDEALQNMKMTFINPVILEEEGTEWVFEE 92
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
GCLS P I +V R ++I D+N + ARV QHE+DH++
Sbjct: 93 GCLSIPDIRENVSRQPKIRIKYFDLNWKEHEAEYDGMAARVIQHEYDHIE 142
>gi|302380585|ref|ZP_07269050.1| peptide deformylase [Finegoldia magna ACS-171-V-Col3]
gi|417925962|ref|ZP_12569375.1| peptide deformylase [Finegoldia magna SY403409CC001050417]
gi|302311528|gb|EFK93544.1| peptide deformylase [Finegoldia magna ACS-171-V-Col3]
gi|341590564|gb|EGS33802.1| peptide deformylase [Finegoldia magna SY403409CC001050417]
Length = 162
Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 67/108 (62%), Gaps = 5/108 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRV-NKYSNKMIPYEEG 59
MF+ MY+ GIGL+ QVG+ +++V + E G+ +VL+NP++ K +K I E G
Sbjct: 35 MFETMYENKGIGLACVQVGMLKRIVVIDMQDEDGK---MVLINPKIIEKSEDKQINIE-G 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS PG + VERP++V ++ D+NG V+ +D A F HE DHL
Sbjct: 91 CLSVPGKNGYVERPKTVVVEYTDLNGNTQRVTGTDYKAHCFCHELDHL 138
>gi|148270260|ref|YP_001244720.1| peptide deformylase [Thermotoga petrophila RKU-1]
gi|166198525|sp|A5ILS1.1|DEF_THEP1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|147735804|gb|ABQ47144.1| peptide deformylase [Thermotoga petrophila RKU-1]
Length = 164
Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 62/107 (57%), Gaps = 5/107 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY DG+GL+APQVGI+ + V + G G + ++NP + + + EEGC
Sbjct: 33 MIETMYHYDGVGLAAPQVGISQRFFVMDV----GNGP-VAVINPEILEIDPETEVAEEGC 87
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFP I ++ER + +K+ ++ G L ARVFQHEFDHL
Sbjct: 88 LSFPEIFVEIERSKRIKVRYQNTKGEYVEEVLEGYAARVFQHEFDHL 134
>gi|302872125|ref|YP_003840761.1| peptide deformylase [Caldicellulosiruptor obsidiansis OB47]
gi|302574984|gb|ADL42775.1| peptide deformylase [Caldicellulosiruptor obsidiansis OB47]
Length = 166
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 65/107 (60%), Gaps = 6/107 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY+ +GIGL+APQVG+ + +V + GEG I LVNP++ +YS + EGC
Sbjct: 35 MKDTMYEANGIGLAAPQVGVLKRAVVIDI----GEGA-IELVNPQI-EYSEGSVVDVEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + +VERP+ V ++A+D G F + L AR HE DHL
Sbjct: 89 LSVPNVWGEVERPQKVVVNAQDRFGNEFRLEAEGLLARAVCHEIDHL 135
>gi|303233917|ref|ZP_07320566.1| peptide deformylase [Finegoldia magna BVS033A4]
gi|302494842|gb|EFL54599.1| peptide deformylase [Finegoldia magna BVS033A4]
Length = 162
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 67/108 (62%), Gaps = 5/108 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRV-NKYSNKMIPYEEG 59
MF+ MY+ GIGL+ QVG+ +++V + E G+ +VL+NP++ K +K I E G
Sbjct: 35 MFETMYENKGIGLACVQVGMLKRIVVIDMQDEDGK---MVLINPKIIEKSEDKQINIE-G 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
CLS PG + VERP++V ++ D+NG V+ +D A F HE DHL
Sbjct: 91 CLSVPGKNGYVERPKTVVVEYTDLNGNTQRVTGTDYKAHCFCHELDHL 138
>gi|357059535|ref|ZP_09120377.1| polypeptide deformylase [Selenomonas infelix ATCC 43532]
gi|355371612|gb|EHG18956.1| polypeptide deformylase [Selenomonas infelix ATCC 43532]
Length = 156
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 62/107 (57%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY DG+GL+APQVG +++++V + E G E LVNP + ++ EGC
Sbjct: 35 MAETMYSADGVGLAAPQVGKSLRIVVIDVQDEHGLLE---LVNPVITMREGSVVD-SEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P ++ DVER E V ++ D R +++ L AR QHE DHL
Sbjct: 91 LSVPQVYGDVERAERVTVEYTDRRSRRRTLTAEGLLARCIQHECDHL 137
>gi|338813381|ref|ZP_08625510.1| peptide deformylase [Acetonema longum DSM 6540]
gi|337274740|gb|EGO63248.1| peptide deformylase [Acetonema longum DSM 6540]
Length = 152
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 64/107 (59%), Gaps = 6/107 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +G+GL+APQVGI ++++V + GEG + L+NP + + + EGC
Sbjct: 35 MAQTMYGAEGVGLAAPQVGILLRIVVIDA----GEGL-VELINPEIVESDGTQVA-SEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DVER V ++ + +G + ++ + L AR QHE DHL
Sbjct: 89 LSIPGVYGDVERYADVTVEGLNRSGKKIRIAANGLLARALQHEIDHL 135
>gi|336313697|ref|ZP_08568636.1| peptide deformylase [Shewanella sp. HN-41]
gi|335862718|gb|EGM67910.1| peptide deformylase [Shewanella sp. HN-41]
Length = 170
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 64/110 (58%), Gaps = 7/110 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVG--ERGEGEEIVLVNPRVNKYSNKMIPYEE 58
MF+ MY+ GIGL+A QV + QL+V + ER + V +NP + S EE
Sbjct: 35 MFETMYQEKGIGLAATQVDYHKQLIVIDLQDDVERSK----VFINPEIIASSGDFCN-EE 89
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
GCLS PGI+A V+R E V + A D NG F+V ++L A QHE DHL+
Sbjct: 90 GCLSVPGIYAKVDRAEFVTVKALDRNGNEFTVEANELFAICIQHEMDHLK 139
>gi|384175314|ref|YP_005556699.1| peptide deformylase [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|349594538|gb|AEP90725.1| peptide deformylase [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
Length = 140
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 62/107 (57%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M + DG+GL+APQ+GI + V + +RG I LVNP + + S + E GC
Sbjct: 15 MYDTMLEMDGVGLAAPQIGILKRAAVVDIGDDRGR---IDLVNPEILEKSGEQTGIE-GC 70
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFPG++ DV R + VK+ A + G F + AR QHE DHL
Sbjct: 71 LSFPGVYGDVTRADYVKVRAFNRQGKPFILEARGFLARAVQHEMDHL 117
>gi|299132603|ref|ZP_07025798.1| peptide deformylase [Afipia sp. 1NLS2]
gi|298592740|gb|EFI52940.1| peptide deformylase [Afipia sp. 1NLS2]
Length = 189
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 60/107 (56%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV + ++L+ + + GE V +NP + S+ + YEEGC
Sbjct: 53 MFETMYDAPGIGLAAIQVAVPLRLITMDVSKKEGEKVPRVFINPEILSKSDDVSVYEEGC 112
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + +VERP SV+I D++G L A QHE DH+
Sbjct: 113 LSIPEYYEEVERPASVRIRYMDLDGKVHEEDAEGLFATCIQHEIDHI 159
>gi|402815957|ref|ZP_10865549.1| peptide deformylase Def [Paenibacillus alvei DSM 29]
gi|402506997|gb|EJW17520.1| peptide deformylase Def [Paenibacillus alvei DSM 29]
Length = 158
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 61/107 (57%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY +G+GL+APQ+GI +++V + E G I +VNP + + + EGC
Sbjct: 35 MADTMYHAEGVGLAAPQIGILKRVIVVDVGDEHGL---IGMVNPVILSAEGEQLG-PEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PGI+ DV R + + + D NG ++ D AR FQHE DHL
Sbjct: 91 LSIPGINGDVRRHQKITVKGLDRNGREITIEAEDFLARAFQHEIDHL 137
>gi|261419369|ref|YP_003253051.1| peptide deformylase [Geobacillus sp. Y412MC61]
gi|297530654|ref|YP_003671929.1| peptide deformylase [Geobacillus sp. C56-T3]
gi|319766184|ref|YP_004131685.1| peptide deformylase [Geobacillus sp. Y412MC52]
gi|261375826|gb|ACX78569.1| peptide deformylase [Geobacillus sp. Y412MC61]
gi|297253906|gb|ADI27352.1| peptide deformylase [Geobacillus sp. C56-T3]
gi|317111050|gb|ADU93542.1| peptide deformylase [Geobacillus sp. Y412MC52]
Length = 157
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 64/108 (59%), Gaps = 4/108 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M++ M DG+GL+APQ+G+ Q+ V + E G I L+NP V + + + E GC
Sbjct: 35 MYETMLAADGVGLAAPQIGVAEQIAVIDVGDEHGR---IELINPVVIEARGEQVDVE-GC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LSFPG+ +V R + VK+ A++ G F++S + AR QHE DHL
Sbjct: 91 LSFPGLFGEVPRAKFVKVRAQNRRGRPFTLSATGFLARALQHEIDHLH 138
>gi|395778965|ref|ZP_10459476.1| peptide deformylase [Bartonella elizabethae Re6043vi]
gi|423714813|ref|ZP_17689037.1| peptide deformylase [Bartonella elizabethae F9251]
gi|395417140|gb|EJF83492.1| peptide deformylase [Bartonella elizabethae Re6043vi]
gi|395431032|gb|EJF97060.1| peptide deformylase [Bartonella elizabethae F9251]
Length = 176
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 62/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ GIGL+A Q+GI ++++V + +V++NP + S + Y+EGC
Sbjct: 35 MLETMYRAKGIGLAAIQIGIPLRMLVMDISPNEEPKNPLVIINPEILWLSEERNIYKEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P A+VERP+ +++ ++ G + + DL A QHE DHL
Sbjct: 95 LSIPDYFAEVERPKRLRVRYQNREGKQTEIEADDLLATCLQHEMDHL 141
>gi|422323718|ref|ZP_16404757.1| peptide deformylase 1 [Achromobacter xylosoxidans C54]
gi|317401262|gb|EFV81903.1| peptide deformylase 1 [Achromobacter xylosoxidans C54]
Length = 170
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 65/113 (57%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+A QV ++ +++V + E + +VL+NP + S+ YEEGC
Sbjct: 35 MAETMYDAPGVGLAATQVDVHERVVVIDVSEE--SNQLLVLINPEITWRSDDYKIYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PGI+ +VER ++ A DI+G F L A QHE DHL+ VFV
Sbjct: 93 LSVPGIYDEVERASRIRCKALDIDGKPFEFDADGLLAVCVQHELDHLEGKVFV 145
>gi|119503586|ref|ZP_01625669.1| peptide deformylase [marine gamma proteobacterium HTCC2080]
gi|119460648|gb|EAW41740.1| peptide deformylase [marine gamma proteobacterium HTCC2080]
Length = 168
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QV ++ +++V + + E + +I +NP V + Y+EGC
Sbjct: 35 MLETMYDAPGIGLAATQVDVHERVIVID-ISENKDQPQI-FINPVVEALDQTLGEYDEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG + + RPE +++ A+D +G FS L L A QHE DHL+
Sbjct: 93 LSVPGFYETIRRPERIRVTAKDRDGELFSRELDGLLAICLQHEIDHLE 140
>gi|389573305|ref|ZP_10163380.1| peptide deformylase [Bacillus sp. M 2-6]
gi|388427002|gb|EIL84812.1| peptide deformylase [Bacillus sp. M 2-6]
Length = 160
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 61/107 (57%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M + DG+GL+APQ+GI+ ++ V + +GE + I LVNP + E GC
Sbjct: 35 MYDTMLELDGVGLAAPQIGISKRIAVVD-IGE--DSGRIDLVNPEILDVEGSQTDIE-GC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFP ++ VERP VK+ A D G F++ AR HE DHL
Sbjct: 91 LSFPSLYGTVERPNYVKVKAFDKKGKPFTIEAEGFLARALLHEIDHL 137
>gi|312134885|ref|YP_004002223.1| peptide deformylase [Caldicellulosiruptor owensensis OL]
gi|311774936|gb|ADQ04423.1| peptide deformylase [Caldicellulosiruptor owensensis OL]
Length = 166
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 65/107 (60%), Gaps = 6/107 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY+ +GIGL+APQVG+ + +V + GEG I LVNP++ +YS + EGC
Sbjct: 35 MKDTMYEANGIGLAAPQVGVLKRAVVIDI----GEGA-IELVNPQI-EYSEGSVVDVEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + +VERP+ V ++A+D G F + L AR HE DHL
Sbjct: 89 LSVPNMWGEVERPQKVVVNAQDRFGNEFRLEAEGLLARALCHEIDHL 135
>gi|333029959|ref|ZP_08458020.1| Peptide deformylase [Bacteroides coprosuis DSM 18011]
gi|332740556|gb|EGJ71038.1| Peptide deformylase [Bacteroides coprosuis DSM 18011]
Length = 186
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 65/112 (58%), Gaps = 5/112 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMV--FNPVGE---RGEGEEIVLVNPRVNKYSNKMIP 55
MF+ M DGIGL+APQ+G++++L+V + + E +G V +NP + + I
Sbjct: 34 MFETMEHADGIGLAAPQIGLSIRLVVMDLDVLSEDFPELKGFRKVFINPYIEEVDGDDIT 93
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
EGCLS PGI DV RP+ V + +D N + + + ARV QHEFDHL
Sbjct: 94 MGEGCLSLPGIGEDVTRPDVVYVTYQDENFEKHTEKVEGYLARVMQHEFDHL 145
>gi|254460696|ref|ZP_05074112.1| peptide deformylase [Rhodobacterales bacterium HTCC2083]
gi|206677285|gb|EDZ41772.1| peptide deformylase [Rhodobacteraceae bacterium HTCC2083]
Length = 166
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 57/107 (53%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY G GL+A QVG+ +L V + + G+ +V +NP + S+ EE C
Sbjct: 35 MFETMYTAPGRGLAASQVGVMRRLFVMDATWKEGDMNPLVCINPSIVPLSDARSTNEEAC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS G+ ADV RP +++ +NG R + + A QHE DHL
Sbjct: 95 LSIVGVSADVSRPNEIELSYTGLNGKRVTAVIEGFAAVCAQHEMDHL 141
>gi|262091714|gb|ACY25304.1| peptide deformylase [uncultured actinobacterium]
Length = 175
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 65/108 (60%), Gaps = 6/108 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M +MY+ G+GL+ PQ+G+ Q+ V++ + + V++NP + + S + + Y+EGC
Sbjct: 36 MLHIMYEAPGLGLAGPQIGVQKQIFVYDV-----DDDPQVILNPTIVESSGEWV-YDEGC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG+ ++ RP+ V + + G V +L AR+FQHE DHLQ
Sbjct: 90 LSIPGLFVEMLRPKEVLVRGLTLEGDEIEVEADELLARLFQHEIDHLQ 137
>gi|229828535|ref|ZP_04454604.1| hypothetical protein GCWU000342_00599 [Shuttleworthia satelles DSM
14600]
gi|229793129|gb|EEP29243.1| hypothetical protein GCWU000342_00599 [Shuttleworthia satelles DSM
14600]
Length = 160
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 64/107 (59%), Gaps = 6/107 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ +G+GL+APQVG+ +++V + GEG +V+VNP + + + I EEGC
Sbjct: 35 MLETMYEANGVGLAAPQVGVLRRIVVIDV----GEGP-LVMVNPEITEKDGEQIG-EEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG A V RPE V A D N FSV + L AR HE DHL
Sbjct: 89 LSVPGKAAIVTRPEHVIARALDRNMKEFSVEGTGLLARAICHELDHL 135
>gi|435853621|ref|YP_007314940.1| peptide deformylase [Halobacteroides halobius DSM 5150]
gi|433670032|gb|AGB40847.1| peptide deformylase [Halobacteroides halobius DSM 5150]
Length = 146
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 63/108 (58%), Gaps = 5/108 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +G+GL+APQ+GI+ +++V + G G + L+NP++ S K +EGC
Sbjct: 35 MVETMYDAEGVGLAAPQIGISKRIVVIDV----GSGV-VELINPQIIDKSEKTYVDQEGC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG VER V + A + +G +F V L AR QHE DHL+
Sbjct: 90 LSIPGETGKVERAFEVTVRALNRDGEKFEVEGKGLLARALQHEIDHLE 137
>gi|321315338|ref|YP_004207625.1| peptide deformylase [Bacillus subtilis BSn5]
gi|449094264|ref|YP_007426755.1| peptide deformylase [Bacillus subtilis XF-1]
gi|320021612|gb|ADV96598.1| peptide deformylase [Bacillus subtilis BSn5]
gi|449028179|gb|AGE63418.1| peptide deformylase [Bacillus subtilis XF-1]
Length = 160
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 62/107 (57%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M + DG+GL+APQ+GI + V + +RG I LVNP + + S + E GC
Sbjct: 35 MYDTMLEMDGVGLAAPQIGILKRAAVVDIGDDRGR---IDLVNPEILEKSGEQTGIE-GC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFPG++ DV R + VK+ A + G F + AR QHE DHL
Sbjct: 91 LSFPGVYGDVTRADYVKVRAFNRQGKPFILEARGFLARAVQHEMDHL 137
>gi|282856366|ref|ZP_06265645.1| peptide deformylase [Pyramidobacter piscolens W5455]
gi|282585737|gb|EFB91026.1| peptide deformylase [Pyramidobacter piscolens W5455]
Length = 159
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 63/108 (58%), Gaps = 6/108 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M VM DG+G++APQVG++ ++ V EGE VLVNP + + + EEGC
Sbjct: 34 MTIVMKDDDGVGIAAPQVGVSKKVAVVC-----FEGERYVLVNPVIVEATGTQ-RGEEGC 87
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LSFPGI +VER E V ++ +D GA+ AR FQHE +HL+
Sbjct: 88 LSFPGIFGEVERAERVVVECQDETGAKRRHEAEGFVARAFQHEIEHLE 135
>gi|386827620|ref|ZP_10114727.1| peptide deformylase [Beggiatoa alba B18LD]
gi|386428504|gb|EIJ42332.1| peptide deformylase [Beggiatoa alba B18LD]
Length = 167
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV I +Q++V + E+ + I L+NP + S + EEGC
Sbjct: 35 MFETMYQARGIGLAATQVNIALQIVVIDISEEKNQP--ICLINPEITHRSGLEV-MEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS P I+ +VER E V + A + G +S L A QHE DHL+
Sbjct: 92 LSVPSIYDEVERAEFVTVSALNCEGEPLELSTGGLLAVCIQHELDHLE 139
>gi|373857266|ref|ZP_09600008.1| peptide deformylase [Bacillus sp. 1NLA3E]
gi|372452916|gb|EHP26385.1| peptide deformylase [Bacillus sp. 1NLA3E]
Length = 161
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 63/107 (58%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M + DG+GL+APQ+G+ ++ + + E G E L+NP V + S + EGC
Sbjct: 35 MYDTMIEFDGVGLAAPQIGLKQRIAIVDIDDELGTVE---LINPEVVEASGEQTG-PEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFPG++ +V RP +K+ A++ G F + AR QHE DHL
Sbjct: 91 LSFPGLYGEVTRPNFIKVAAQNRKGKAFVLEAEGFLARAIQHEIDHL 137
>gi|15595217|ref|NP_248709.1| peptide deformylase [Pseudomonas aeruginosa PAO1]
gi|107099012|ref|ZP_01362930.1| hypothetical protein PaerPA_01000019 [Pseudomonas aeruginosa PACS2]
gi|218888765|ref|YP_002437629.1| peptide deformylase [Pseudomonas aeruginosa LESB58]
gi|254237739|ref|ZP_04931062.1| polypeptide deformylase [Pseudomonas aeruginosa C3719]
gi|254243131|ref|ZP_04936453.1| polypeptide deformylase [Pseudomonas aeruginosa 2192]
gi|296386491|ref|ZP_06875990.1| peptide deformylase [Pseudomonas aeruginosa PAb1]
gi|386056090|ref|YP_005972612.1| peptide deformylase [Pseudomonas aeruginosa M18]
gi|392981429|ref|YP_006480016.1| peptide deformylase [Pseudomonas aeruginosa DK2]
gi|416866946|ref|ZP_11915972.1| peptide deformylase [Pseudomonas aeruginosa 138244]
gi|416887710|ref|ZP_11922769.1| peptide deformylase [Pseudomonas aeruginosa 152504]
gi|418587865|ref|ZP_13151886.1| peptide deformylase [Pseudomonas aeruginosa MPAO1/P1]
gi|418591628|ref|ZP_13155524.1| peptide deformylase [Pseudomonas aeruginosa MPAO1/P2]
gi|419757390|ref|ZP_14283733.1| peptide deformylase [Pseudomonas aeruginosa PADK2_CF510]
gi|420141067|ref|ZP_14648783.1| peptide deformylase [Pseudomonas aeruginosa CIG1]
gi|421153046|ref|ZP_15612608.1| peptide deformylase [Pseudomonas aeruginosa ATCC 14886]
gi|421156964|ref|ZP_15616383.1| peptide deformylase [Pseudomonas aeruginosa ATCC 25324]
gi|421167539|ref|ZP_15625722.1| peptide deformylase [Pseudomonas aeruginosa ATCC 700888]
gi|421183715|ref|ZP_15641164.1| peptide deformylase [Pseudomonas aeruginosa E2]
gi|421514625|ref|ZP_15961311.1| peptide deformylase [Pseudomonas aeruginosa PAO579]
gi|424943600|ref|ZP_18359363.1| polypeptide deformylase [Pseudomonas aeruginosa NCMG1179]
gi|451983637|ref|ZP_21931913.1| Peptide deformylase [Pseudomonas aeruginosa 18A]
gi|17432949|sp|Q9I7A8.1|DEF_PSEAE RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|9945838|gb|AAG03409.1|AE004441_10 polypeptide deformylase [Pseudomonas aeruginosa PAO1]
gi|126169670|gb|EAZ55181.1| polypeptide deformylase [Pseudomonas aeruginosa C3719]
gi|126196509|gb|EAZ60572.1| polypeptide deformylase [Pseudomonas aeruginosa 2192]
gi|218768988|emb|CAW24746.1| polypeptide deformylase [Pseudomonas aeruginosa LESB58]
gi|334833122|gb|EGM12290.1| peptide deformylase [Pseudomonas aeruginosa 152504]
gi|334833891|gb|EGM12916.1| peptide deformylase [Pseudomonas aeruginosa 138244]
gi|346060046|dbj|GAA19929.1| polypeptide deformylase [Pseudomonas aeruginosa NCMG1179]
gi|347302396|gb|AEO72510.1| peptide deformylase [Pseudomonas aeruginosa M18]
gi|375041377|gb|EHS34078.1| peptide deformylase [Pseudomonas aeruginosa MPAO1/P1]
gi|375049687|gb|EHS42178.1| peptide deformylase [Pseudomonas aeruginosa MPAO1/P2]
gi|384396189|gb|EIE42609.1| peptide deformylase [Pseudomonas aeruginosa PADK2_CF510]
gi|392316934|gb|AFM62314.1| peptide deformylase [Pseudomonas aeruginosa DK2]
gi|403246194|gb|EJY59934.1| peptide deformylase [Pseudomonas aeruginosa CIG1]
gi|404348353|gb|EJZ74690.1| peptide deformylase [Pseudomonas aeruginosa PAO579]
gi|404524330|gb|EKA34679.1| peptide deformylase [Pseudomonas aeruginosa ATCC 14886]
gi|404534227|gb|EKA43980.1| peptide deformylase [Pseudomonas aeruginosa ATCC 700888]
gi|404539809|gb|EKA49256.1| peptide deformylase [Pseudomonas aeruginosa E2]
gi|404551100|gb|EKA59787.1| peptide deformylase [Pseudomonas aeruginosa ATCC 25324]
gi|451758583|emb|CCQ84436.1| Peptide deformylase [Pseudomonas aeruginosa 18A]
gi|453044695|gb|EME92417.1| peptide deformylase [Pseudomonas aeruginosa PA21_ST175]
Length = 168
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + ++ E V +NP + M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDKSEPR--VFINPEFEPLTEDMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ V+I A D +G F L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHL 139
>gi|429333783|ref|ZP_19214474.1| peptide deformylase [Pseudomonas putida CSV86]
gi|428761587|gb|EKX83810.1| peptide deformylase [Pseudomonas putida CSV86]
Length = 168
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++ +++V + +R E V +NP + + + M Y+EGC
Sbjct: 35 MFETMYDAPGIGLAATQVNVHKRVVVMDLSEDRSEPR--VFINPELEELTQDMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP V++ A D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPLQVRVKALDRDGKPYELIAEGLLAVCIQHECDHL 139
>gi|399543081|ref|YP_006556389.1| peptide deformylase [Marinobacter sp. BSs20148]
gi|399158413|gb|AFP28976.1| Peptide deformylase [Marinobacter sp. BSs20148]
Length = 167
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 58/107 (54%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++ Q++V + + E V +NP++ + +EGC
Sbjct: 34 MFETMYDAVGIGLAASQVNVHQQIVVMDLSDDNSEPR--VFINPKIEVLDGDLEAMQEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + DVER E I A D NG F + L A QHE DHL
Sbjct: 92 LSVPGFYEDVERIEHCLIKALDRNGEAFEIEARGLLAVCIQHEMDHL 138
>gi|153815688|ref|ZP_01968356.1| hypothetical protein RUMTOR_01924 [Ruminococcus torques ATCC 27756]
gi|317501925|ref|ZP_07960109.1| peptide deformylase [Lachnospiraceae bacterium 8_1_57FAA]
gi|331088261|ref|ZP_08337180.1| polypeptide deformylase [Lachnospiraceae bacterium 3_1_46FAA]
gi|336440098|ref|ZP_08619697.1| polypeptide deformylase [Lachnospiraceae bacterium 1_1_57FAA]
gi|145846929|gb|EDK23847.1| peptide deformylase [Ruminococcus torques ATCC 27756]
gi|316896605|gb|EFV18692.1| peptide deformylase [Lachnospiraceae bacterium 8_1_57FAA]
gi|330408505|gb|EGG87971.1| polypeptide deformylase [Lachnospiraceae bacterium 3_1_46FAA]
gi|336014447|gb|EGN44296.1| polypeptide deformylase [Lachnospiraceae bacterium 1_1_57FAA]
Length = 166
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 66/107 (61%), Gaps = 6/107 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+++G+GL+APQVG+ +++V + GEG IVL+NP++ + S + EEGC
Sbjct: 35 MLETMYESNGVGLAAPQVGVLKRIVVIDV----GEGP-IVLINPQIIESSGEQTG-EEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG V RP+ VK+ A D N F + L AR F HE DHL
Sbjct: 89 LSVPGKFGIVTRPDRVKVRAFDENMNEFEMEGEGLLARAFCHELDHL 135
>gi|22219294|pdb|1LRY|A Chain A, Crystal Structure Of P. Aeruginosa Peptide Deformylase
Complexed With Antibiotic Actinonin
Length = 167
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + ++ E V +NP + M Y+EGC
Sbjct: 34 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDKSEPR--VFINPEFEPLTEDMDQYQEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ V+I A D +G F L A QHE DHL
Sbjct: 92 LSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHL 138
>gi|333891511|ref|YP_004465386.1| peptide deformylase [Alteromonas sp. SN2]
gi|332991529|gb|AEF01584.1| peptide deformylase [Alteromonas sp. SN2]
Length = 169
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 61/108 (56%), Gaps = 3/108 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ M +GIGL+A QV +VQ++V N ++ E V +NP + K I EEGC
Sbjct: 35 MFETMKDENGIGLAATQVDRHVQVVVMNVAEDQDEPR--VFINPEITKKDGSTIS-EEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG +A VER E + + A + NG F + L A QHE DHL+
Sbjct: 92 LSVPGNYAKVERAEEITVKALNENGEAFELEADGLLAICIQHELDHLK 139
>gi|238754205|ref|ZP_04615563.1| Peptide deformylase 2 [Yersinia ruckeri ATCC 29473]
gi|238707701|gb|EEQ00061.1| Peptide deformylase 2 [Yersinia ruckeri ATCC 29473]
Length = 170
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 62/107 (57%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY +GIGL+A QV I+ Q++V + R + +VL+NP + + S + EEGC
Sbjct: 35 MFDTMYAEEGIGLAATQVDIHQQIIVIDVSENRDQ--RLVLINPELLEKSGET-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P A V R E +KI A D +G F + DL A QHE DHL
Sbjct: 92 LSIPEQRALVPRAEKIKIRALDRDGKPFELEADDLLAICIQHEMDHL 138
>gi|149200572|ref|ZP_01877580.1| peptide deformylase [Lentisphaera araneosa HTCC2155]
gi|149136344|gb|EDM24789.1| peptide deformylase [Lentisphaera araneosa HTCC2155]
Length = 197
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 67/118 (56%), Gaps = 11/118 (9%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGER----GEGEEIV-------LVNPRVNKY 49
M D MY+ +GIGL+APQVG ++++ V + E +GE+++ L+NP +
Sbjct: 39 MVDTMYEENGIGLAAPQVGRSLRVFVIDTHFEDETYGSDGEKLLCPKMPLALINPEIIST 98
Query: 50 SNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
S + I +EEGCLS P I+A V RP ++ + A+ + G L +R QHE DHL
Sbjct: 99 SGEDISFEEGCLSIPQINAAVVRPSNIVLKAQTLEGEIIEADFGGLTSRCMQHEIDHL 156
>gi|49081366|gb|AAT50122.1| PA0019, partial [synthetic construct]
Length = 169
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + ++ E V +NP + M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDKSEPR--VFINPEFEPLTEDMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ V+I A D +G F L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHL 139
>gi|90422323|ref|YP_530693.1| peptide deformylase [Rhodopseudomonas palustris BisB18]
gi|123089811|sp|Q21B62.1|DEF_RHOPB RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|90104337|gb|ABD86374.1| peptide deformylase [Rhodopseudomonas palustris BisB18]
Length = 175
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 61/109 (55%), Gaps = 2/109 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEG--EEIVLVNPRVNKYSNKMIPYEE 58
MF+ MY+ GIGL+A QV V+L+ + V + G E +NP V S +M YEE
Sbjct: 35 MFETMYEAPGIGLAAIQVAQPVRLITMDLVRKEGNSLTEPRAFINPEVISASEEMNVYEE 94
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
GCLS P +A+VERP+ V+I D++G L A QHE DHL
Sbjct: 95 GCLSIPEYYAEVERPKQVRIRYTDLDGNVKEEDADGLFATCIQHEIDHL 143
>gi|345429246|ref|YP_004822364.1| peptide deformylase [Haemophilus parainfluenzae T3T1]
gi|301155307|emb|CBW14773.1| peptide deformylase [Haemophilus parainfluenzae T3T1]
Length = 169
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 62/107 (57%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+APQV I +++ + G++ ++VL+NP + S EEGC
Sbjct: 35 MFDTMYQEEGIGLAAPQVDILQRIITIDIEGDKQN--QLVLINPEI-LASEGETGIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG A V R E V + A D +G F++ L A QHE DHL
Sbjct: 92 LSIPGFRALVPRKEKVTVKALDRHGKEFTLDADGLLAICIQHEIDHL 138
>gi|395792602|ref|ZP_10472026.1| peptide deformylase [Bartonella vinsonii subsp. arupensis Pm136co]
gi|423713263|ref|ZP_17687523.1| peptide deformylase [Bartonella vinsonii subsp. arupensis
OK-94-513]
gi|395423304|gb|EJF89499.1| peptide deformylase [Bartonella vinsonii subsp. arupensis
OK-94-513]
gi|395432159|gb|EJF98148.1| peptide deformylase [Bartonella vinsonii subsp. arupensis Pm136co]
Length = 176
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 63/107 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+A Q+GI ++++V + G +V++NP + S++ Y+EGC
Sbjct: 35 MLETMYHAKGVGLAAIQIGIPLRMLVIDVSGNDDAKNPLVIINPEILWLSDERSIYKEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP+ + + ++ G + + +L A QHE DHL
Sbjct: 95 LSIPEYYAEVERPKRLCVRYQNREGKQTEIEADNLLATCLQHEIDHL 141
>gi|228473115|ref|ZP_04057872.1| peptide deformylase [Capnocytophaga gingivalis ATCC 33624]
gi|228275697|gb|EEK14474.1| peptide deformylase [Capnocytophaga gingivalis ATCC 33624]
Length = 198
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 69/120 (57%), Gaps = 12/120 (10%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGERGE----------GEEIVLVNPRVNK 48
M+ MY ++G+GL+APQVG+ ++L V + P E + G + +N ++ K
Sbjct: 34 MYQTMYHSNGVGLAAPQVGLAIRLFVVDTEPFCENDDLSDAERDYLKGFKKAFINAKILK 93
Query: 49 YSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
+ P+ EGCLS PGI DV R ++ I+ +D + A + + S L ARV QHE+DH++
Sbjct: 94 EEGEPWPFSEGCLSIPGISEDVLRKPTIVIEYQDEHFATHTETFSGLVARVIQHEYDHIE 153
>gi|337754117|ref|YP_004646628.1| peptide deformylase [Francisella sp. TX077308]
gi|336445722|gb|AEI35028.1| Peptide deformylase [Francisella sp. TX077308]
Length = 172
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 59/107 (55%), Gaps = 1/107 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D+M + +G+GL+A QVGI + + E E I ++NP + S K+I EEGC
Sbjct: 36 MRDLMIEANGVGLAAVQVGIKKRFFIMYDNLESETPETITIINPEIIDQSGKIID-EEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFPG+ A V R V+I A + G + D AR QHE DHL
Sbjct: 95 LSFPGVSAKVNRATRVRIKALNEFGEEIEIEKDDFLARCIQHEIDHL 141
>gi|374290494|ref|YP_005037547.1| peptide deformylase [Blattabacterium sp. (Cryptocercus punctulatus)
str. Cpu]
gi|358377286|gb|AEU09474.1| peptide deformylase [Blattabacterium sp. (Cryptocercus punctulatus)
str. Cpu]
Length = 179
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 66/111 (59%), Gaps = 3/111 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNP--VGERGEGE-EIVLVNPRVNKYSNKMIPYE 57
MF+ ++K GIGL+APQ+G N++L + + + G+ + V +N R+ K + +
Sbjct: 38 MFETLHKVKGIGLAAPQIGKNIRLFIVKTPYLSKNGKNNYQEVFINARILKIYGEEYEFN 97
Query: 58 EGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
EGCLSFPGI V+R + I+ D N + +L + +RV QHE+DH++
Sbjct: 98 EGCLSFPGIMEYVKRKSHILIEYYDNNWNKKKKTLKGICSRVIQHEYDHIE 148
>gi|107024058|ref|YP_622385.1| peptide deformylase [Burkholderia cenocepacia AU 1054]
gi|116691145|ref|YP_836768.1| peptide deformylase [Burkholderia cenocepacia HI2424]
gi|206558867|ref|YP_002229627.1| peptide deformylase [Burkholderia cenocepacia J2315]
gi|421865399|ref|ZP_16297077.1| Peptide deformylase [Burkholderia cenocepacia H111]
gi|444360692|ref|ZP_21161879.1| peptide deformylase [Burkholderia cenocepacia BC7]
gi|444373416|ref|ZP_21172781.1| peptide deformylase [Burkholderia cenocepacia K56-2Valvano]
gi|105894247|gb|ABF77412.1| peptide deformylase [Burkholderia cenocepacia AU 1054]
gi|116649234|gb|ABK09875.1| peptide deformylase [Burkholderia cenocepacia HI2424]
gi|198034904|emb|CAR50776.1| peptide deformylase [Burkholderia cenocepacia J2315]
gi|358074617|emb|CCE47955.1| Peptide deformylase [Burkholderia cenocepacia H111]
gi|443591764|gb|ELT60630.1| peptide deformylase [Burkholderia cenocepacia K56-2Valvano]
gi|443599595|gb|ELT67860.1| peptide deformylase [Burkholderia cenocepacia BC7]
Length = 167
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 65/113 (57%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QV ++ +++V + E+ E +NP + S+ YEEGC
Sbjct: 35 MAETMYAAPGIGLAATQVDVHERVIVIDVSEEKNELR--AFINPEIVWSSDAKQTYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LS PGI+ +VERP+ V++ A + G F + L A QHE DHL +VFV
Sbjct: 93 LSVPGIYDEVERPDHVRVRALNEQGETFELDCEGLLAVCVQHEMDHLMGRVFV 145
>gi|372211170|ref|ZP_09498972.1| peptide deformylase [Flavobacteriaceae bacterium S85]
Length = 195
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 12/120 (10%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGERGEG----EEI------VLVNPRVNK 48
M++ M G+GL+APQ+G +++L V + P E E +E+ V +NP++ K
Sbjct: 34 MWETMENAHGVGLAAPQIGKSIRLFVIDATPFAEDEENTPEEKEVLSNFRKVFINPKIVK 93
Query: 49 YSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
P+EEGCLS P + DV R E+V I ++ N L+ L ARVFQHE+DH++
Sbjct: 94 EEGDEWPFEEGCLSIPEVREDVYRQETVHITYQNENFESKKEILTGLAARVFQHEYDHIE 153
>gi|325577099|ref|ZP_08147583.1| peptide deformylase [Haemophilus parainfluenzae ATCC 33392]
gi|325160681|gb|EGC72802.1| peptide deformylase [Haemophilus parainfluenzae ATCC 33392]
Length = 175
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 62/107 (57%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+APQV I +++ + G++ ++VL+NP + S EEGC
Sbjct: 41 MFDTMYQEEGIGLAAPQVDILQRIITIDIEGDKQN--QLVLINPEI-LASEGETGIEEGC 97
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG A V R E V + A D +G F++ L A QHE DHL
Sbjct: 98 LSIPGFRALVPRKEKVTVKALDRHGKEFTLDADGLLAICIQHEIDHL 144
>gi|34809567|pdb|1IX1|A Chain A, Crystal Structure Of P.Aeruginosa Peptide Deformylase
Complexed With Antibiotic Actinonin
gi|34809568|pdb|1IX1|B Chain B, Crystal Structure Of P.Aeruginosa Peptide Deformylase
Complexed With Antibiotic Actinonin
Length = 171
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + ++ E V +NP + M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDKSEPR--VFINPEFEPLTEDMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ V+I A D +G F L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHL 139
>gi|399020096|ref|ZP_10722236.1| peptide deformylase [Herbaspirillum sp. CF444]
gi|398096106|gb|EJL86435.1| peptide deformylase [Herbaspirillum sp. CF444]
Length = 170
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 62/113 (54%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+A Q+ ++ Q++V + E V +NP + S + Y+EGC
Sbjct: 35 MAETMYDAPGVGLAATQIDVHEQVIVIDVSDASNELR--VFINPEITWSSEEKQVYDEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LS PGI+ VERP VK A D +G F V L A QHE DHL +VFV
Sbjct: 93 LSVPGIYDGVERPARVKARALDADGKEFEVEADGLLAVCIQHEMDHLKGKVFV 145
>gi|419802860|ref|ZP_14328040.1| peptide deformylase [Haemophilus parainfluenzae HK262]
gi|419845517|ref|ZP_14368784.1| peptide deformylase [Haemophilus parainfluenzae HK2019]
gi|385189100|gb|EIF36569.1| peptide deformylase [Haemophilus parainfluenzae HK262]
gi|386415385|gb|EIJ29917.1| peptide deformylase [Haemophilus parainfluenzae HK2019]
Length = 169
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 62/107 (57%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+APQV I +++ + G++ ++VL+NP + S EEGC
Sbjct: 35 MFDTMYQEEGIGLAAPQVDILQRIITIDIEGDKQN--QLVLINPEI-LASEGETGIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG A V R E V + A D +G F++ L A QHE DHL
Sbjct: 92 LSIPGFRALVPRKEKVTVKALDRHGKEFTLDADGLLAICIQHEIDHL 138
>gi|310778475|ref|YP_003966808.1| peptide deformylase [Ilyobacter polytropus DSM 2926]
gi|309747798|gb|ADO82460.1| peptide deformylase [Ilyobacter polytropus DSM 2926]
Length = 170
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 66/107 (61%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + M++ G+GL+APQ+G++ ++ V + +G+ ++NP ++S +++ +EEGC
Sbjct: 34 MVESMHEAGGVGLAAPQIGVSKRIFVIDI----EDGKIRKVINPEFLEFSKEIVEHEEGC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ V+RP VKI + NG + L +R FQHE DHL
Sbjct: 90 LSVPGVYKKVKRPARVKIKYTNENGEKVIEEAEGLLSRAFQHEADHL 136
>gi|374594361|ref|ZP_09667366.1| peptide deformylase [Gillisia limnaea DSM 15749]
gi|373872436|gb|EHQ04433.1| peptide deformylase [Gillisia limnaea DSM 15749]
Length = 196
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 14/121 (11%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI-------------VLVNPRVN 47
M+D MY+ G+GL+A Q+G+ ++L + +P GE EE+ V +NP++
Sbjct: 34 MWDTMYEAYGVGLAAQQIGLPIRLFIIDPSA-FGEDEELEIAEQEQLKNLRKVFINPKIV 92
Query: 48 KYSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
+ + EGCLS P + DV R + + I+ +D N FS L ARV QHE+DH+
Sbjct: 93 AEEGEEWAFNEGCLSIPEVREDVFRKQQITIEYQDENFNSFSEVYEGLAARVIQHEYDHI 152
Query: 108 Q 108
+
Sbjct: 153 E 153
>gi|332139430|ref|YP_004425168.1| peptide deformylase [Alteromonas macleodii str. 'Deep ecotype']
gi|410859674|ref|YP_006974908.1| peptide deformylase [Alteromonas macleodii AltDE1]
gi|238693290|sp|B4S291.1|DEF_ALTMD RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|327549452|gb|AEA96170.1| peptide deformylase [Alteromonas macleodii str. 'Deep ecotype']
gi|410816936|gb|AFV83553.1| peptide deformylase [Alteromonas macleodii AltDE1]
Length = 169
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ M +GIGL+A QV +VQ++V + ++ E V +NP + + I EEGC
Sbjct: 35 MFETMKDENGIGLAATQVNRHVQVVVMDVSEDQNEPR--VFINPEITRKDGSTIS-EEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG +A VER E++ + A D NG F + L A QHE DHL+
Sbjct: 92 LSVPGNYAKVERAEAITVKALDQNGEAFELDAEGLLAICIQHELDHLK 139
>gi|421496292|ref|ZP_15943527.1| def [Aeromonas media WS]
gi|407184720|gb|EKE58542.1| def [Aeromonas media WS]
Length = 136
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 64/107 (59%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY +GIGL+A QV I+ +++V + +R + ++VL+NP + + S EEGC
Sbjct: 1 MFETMYAEEGIGLAATQVDIHQRIIVIDVSEDRED--QLVLINPEILEQSGST-GIEEGC 57
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG A V R E VK+ A D +G F + DL A QHE DHL
Sbjct: 58 LSVPGSRALVPRAEWVKVRALDRHGKPFELEADDLLAICIQHEMDHL 104
>gi|134094837|ref|YP_001099912.1| peptide deformylase [Herminiimonas arsenicoxydans]
gi|133738740|emb|CAL61787.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Herminiimonas
arsenicoxydans]
Length = 177
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 65/113 (57%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+A QV +++++++ + +R + +V++NP V K EEGC
Sbjct: 35 MAQTMYAADGIGLAATQVNVHLRVILVDISEDRSQ--LLVMINPEVIKMGGSA-ECEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS P ++ V+R +++ A DING F V L A QHE DHLQ VFV
Sbjct: 92 LSVPDVYEKVKRAAWIRLRALDINGKPFEVQADGLKAMCIQHELDHLQGMVFV 144
>gi|427402492|ref|ZP_18893489.1| peptide deformylase 1 [Massilia timonae CCUG 45783]
gi|425718298|gb|EKU81245.1| peptide deformylase 1 [Massilia timonae CCUG 45783]
Length = 179
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 67/113 (59%), Gaps = 4/113 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+A QV ++ +++ + V E E + +V +NP + S + Y+EGC
Sbjct: 36 MAETMYDAPGVGLAATQVDVHERVVTID-VTEAQE-KLMVFINPEITWASEEKQVYDEGC 93
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL--QVFV 111
LS PGI+ VERP VK+ A D++G F V L A QHE DHL +VFV
Sbjct: 94 LSVPGIYDGVERPARVKVRAFDVDGKPFEVEADGLLAVCIQHEMDHLMGKVFV 146
>gi|330831510|ref|YP_004394462.1| peptide deformylase 1 [Aeromonas veronii B565]
gi|423211839|ref|ZP_17198372.1| peptide deformylase [Aeromonas veronii AER397]
gi|328806646|gb|AEB51845.1| Peptide deformylase 1 [Aeromonas veronii B565]
gi|404612640|gb|EKB09698.1| peptide deformylase [Aeromonas veronii AER397]
Length = 170
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 63/107 (58%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY +GIGL+A QV I+ +++V + V E E + +VL+NP V + EEGC
Sbjct: 35 MFETMYAEEGIGLAATQVDIHQRIIVID-VSENRE-DPLVLINPEVIEQCGST-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG A V R E +KI A D NG F + DL A QHE DHL
Sbjct: 92 LSVPGSRALVPRAEQIKIRALDRNGKPFELEADDLLAICIQHEMDHL 138
>gi|315125137|ref|YP_004067140.1| N-terminal methionine peptide deformylase [Pseudoalteromonas sp.
SM9913]
gi|315013650|gb|ADT66988.1| N-terminal methionine peptide deformylase [Pseudoalteromonas sp.
SM9913]
Length = 168
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 64/108 (59%), Gaps = 3/108 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +GIGL+A QV I+ +++V + ER E +VL+NP++ K + EEGC
Sbjct: 35 MLETMYDENGIGLAATQVDIHQRIVVIDVSEERNEP--LVLINPQIIKKDGSTVS-EEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS P +A V+R E+V + A + G F + +L A QHE DHLQ
Sbjct: 92 LSVPHSYAKVDRAETVTVAALNEEGKEFILDADELLAICIQHELDHLQ 139
>gi|254361452|ref|ZP_04977592.1| peptide deformylase [Mannheimia haemolytica PHL213]
gi|261491954|ref|ZP_05988531.1| peptide deformylase [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261496243|ref|ZP_05992648.1| peptide deformylase [Mannheimia haemolytica serotype A2 str. OVINE]
gi|452744847|ref|ZP_21944687.1| peptide deformylase [Mannheimia haemolytica serotype 6 str. H23]
gi|153092962|gb|EDN73988.1| peptide deformylase [Mannheimia haemolytica PHL213]
gi|261308074|gb|EEY09372.1| peptide deformylase [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261312421|gb|EEY13547.1| peptide deformylase [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|452087089|gb|EME03472.1| peptide deformylase [Mannheimia haemolytica serotype 6 str. H23]
Length = 170
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 64/107 (59%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ +GIGL+APQVG+ +++ + G++ ++VL+NP + + S + EEGC
Sbjct: 35 MFETMYEHEGIGLAAPQVGVLKRVITIDIEGDKTN--QVVLINPEILESSGET-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG A V R E VK+ A + G + DL A QHE DHL
Sbjct: 92 LSIPGHRALVPRKEKVKVKALNRQGEEIIIDADDLFAICIQHEIDHL 138
>gi|406675260|ref|ZP_11082449.1| peptide deformylase [Aeromonas veronii AMC35]
gi|404627592|gb|EKB24392.1| peptide deformylase [Aeromonas veronii AMC35]
Length = 170
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 63/107 (58%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY +GIGL+A QV I+ +++V + V E E + +VL+NP V + EEGC
Sbjct: 35 MFETMYAEEGIGLAATQVDIHQRIIVID-VSENRE-DPLVLINPEVIEQCGST-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG A V R E +KI A D NG F + DL A QHE DHL
Sbjct: 92 LSVPGSRALVPRAEQIKIRALDRNGKPFELEADDLLAICIQHEMDHL 138
>gi|222147432|ref|YP_002548389.1| peptide deformylase [Agrobacterium vitis S4]
gi|221734422|gb|ACM35385.1| peptide deformylase [Agrobacterium vitis S4]
Length = 176
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 59/107 (55%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+ + +L+V + E + + +V +NP + S YEEGC
Sbjct: 39 MLETMYDAPGIGLAAVQIAVPRRLLVIDVSKEGEDKQPLVFINPEIIGSSQARSTYEEGC 98
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP +V + + D +G + L A QHE DHL
Sbjct: 99 LSIPDYYAEVERPAAVTVKSLDRHGKEQVIEADGLLATCLQHEIDHL 145
>gi|322831106|ref|YP_004211133.1| peptide deformylase [Rahnella sp. Y9602]
gi|384256274|ref|YP_005400208.1| peptide deformylase [Rahnella aquatilis HX2]
gi|321166307|gb|ADW72006.1| peptide deformylase [Rahnella sp. Y9602]
gi|380752250|gb|AFE56641.1| peptide deformylase [Rahnella aquatilis HX2]
Length = 170
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 62/107 (57%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY +GIGL+A QV I+ +++V + R E +VL+NP + + S + EEGC
Sbjct: 35 MFETMYAEEGIGLAATQVDIHQRIIVIDVSENRDE--RLVLINPELLEKSGET-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P A V R E VKI A D +G F + DL A QHE DHL
Sbjct: 92 LSIPDQRALVPRAEKVKIRALDRDGKTFELEADDLLAICIQHEMDHL 138
>gi|423395832|ref|ZP_17373033.1| peptide deformylase 1 [Bacillus cereus BAG2X1-1]
gi|423406708|ref|ZP_17383857.1| peptide deformylase 1 [Bacillus cereus BAG2X1-3]
gi|401653574|gb|EJS71118.1| peptide deformylase 1 [Bacillus cereus BAG2X1-1]
gi|401659998|gb|EJS77481.1| peptide deformylase 1 [Bacillus cereus BAG2X1-3]
Length = 156
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 6/109 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRV-NKYSNKMIPYEEG 59
M + M DG+GL+APQVG+++Q+ V + + G+ I L+NP + K ++ P EG
Sbjct: 35 MHETMLIADGVGLAAPQVGVSLQVAVVDIDDDTGK---IELINPSILEKRGEQLGP--EG 89
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
CLSFPG++ +VER + +K+ A++ G F + AR QHE DHL
Sbjct: 90 CLSFPGLYGEVERADYIKVRAQNRRGKIFLLEAEGFLARAIQHEIDHLH 138
>gi|304320578|ref|YP_003854221.1| peptide deformylase [Parvularcula bermudensis HTCC2503]
gi|303299480|gb|ADM09079.1| peptide deformylase [Parvularcula bermudensis HTCC2503]
Length = 170
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 59/108 (54%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + GE VNP + + + PY+EGC
Sbjct: 35 MLETMYAAPGIGLAAIQIGVPKRVIVMDLAGEGEPPAPRYFVNPVIRNPATDLAPYQEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS P + ++ERP + +D D +G ++ L A QHE DHL+
Sbjct: 95 LSVPDYYEEIERPATCTVDYLDYDGTPRTLEAEGLLATCIQHEMDHLE 142
>gi|24371632|ref|NP_715674.1| peptide deformylase Def [Shewanella oneidensis MR-1]
gi|32363158|sp|Q8EKQ8.1|DEF1_SHEON RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|24345388|gb|AAN53119.1| peptide deformylase Def [Shewanella oneidensis MR-1]
Length = 168
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV + QL+V + E + V +NP + S EEGC
Sbjct: 35 MFETMYQEKGIGLAATQVDYHKQLIVMDLQDEVERPK--VFINPEIIASSGDFCN-EEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PGI+A V+R E V + A D +G F+V DL A QHE DHL+
Sbjct: 92 LSVPGIYAKVDRAEFVTVKALDRHGNEFTVEADDLFAICIQHEMDHLK 139
>gi|329926582|ref|ZP_08280995.1| peptide deformylase [Paenibacillus sp. HGF5]
gi|328939123|gb|EGG35486.1| peptide deformylase [Paenibacillus sp. HGF5]
Length = 164
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 60/107 (56%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY +G+GL+APQVGI +L+V + E G I ++NP + + + EGC
Sbjct: 35 MADTMYDAEGVGLAAPQVGILKRLIVIDAGDEHGL---IKMINPEIVESEGEQFG-PEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + DV R E V + D G ++ + L AR FQHE DHL
Sbjct: 91 LSIPGWNGDVRRAEKVTVKGLDREGNELVITGTGLLARAFQHEIDHL 137
>gi|262038785|ref|ZP_06012139.1| peptide deformylase [Leptotrichia goodfellowii F0264]
gi|261747196|gb|EEY34681.1| peptide deformylase [Leptotrichia goodfellowii F0264]
Length = 170
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + M K +G+GL+A QV I + V E + +VNP + + S+++I YEEGC
Sbjct: 32 MVETMRKANGVGLAANQVDIPKRFFVLEV-----ENKVKKIVNPEIIESSDEIIEYEEGC 86
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PGI+ V RP +K+ + G L ++ AR FQHE DHL
Sbjct: 87 LSIPGIYKKVNRPSEIKVKYLNEKGEEVIEELKEMWARAFQHELDHL 133
>gi|395650510|ref|ZP_10438360.1| peptide deformylase [Pseudomonas extremaustralis 14-3 substr.
14-3b]
Length = 168
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + +M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHQRVVVMDLSEDRSEPR--VFINPEFEPLTEEMGEYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P + +VERP VKI+A D +G + + L A QHE DHL
Sbjct: 93 LSVPEFYENVERPLRVKINALDRDGKPYELIAEGLLAVCIQHECDHL 139
>gi|154490274|ref|ZP_02030535.1| hypothetical protein PARMER_00506 [Parabacteroides merdae ATCC
43184]
gi|423721805|ref|ZP_17695981.1| peptide deformylase [Parabacteroides merdae CL09T00C40]
gi|154089166|gb|EDN88210.1| peptide deformylase [Parabacteroides merdae ATCC 43184]
gi|409242818|gb|EKN35577.1| peptide deformylase [Parabacteroides merdae CL09T00C40]
Length = 185
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNP--VGE---RGEGEEIVLVNPRVNKYSNKMIP 55
MF+ MY DG+GL+APQVG++++L+V + +G+ +G + ++NP + S + +
Sbjct: 34 MFETMYNADGVGLAAPQVGLSLRLLVIDADVMGDDFPECKGFKRAMINPVFLEKSEEEVS 93
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
EEGCLS PG+H V R V++ D + ++ ARV QHE +HL+
Sbjct: 94 MEEGCLSLPGVHEKVARSAKVRVKYLDEDLKEHEETVEGFAARVVQHECEHLE 146
>gi|386311816|ref|YP_006007981.1| peptide deformylase [Shewanella putrefaciens 200]
gi|319424441|gb|ADV52515.1| peptide deformylase [Shewanella putrefaciens 200]
Length = 170
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV + QL+V + E + V +NP + S EEGC
Sbjct: 35 MFETMYQEKGIGLAATQVDYHKQLIVMDLQDEVERPK--VFINPEIISSSGDFCN-EEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PGI+A V+R E V + A D NG F V ++L A QHE DHL+
Sbjct: 92 LSVPGIYAKVDRAEFVTVKALDRNGCEFIVEANELFAICIQHEMDHLK 139
>gi|374310947|ref|YP_005057377.1| peptide deformylase [Granulicella mallensis MP5ACTX8]
gi|358752957|gb|AEU36347.1| peptide deformylase [Granulicella mallensis MP5ACTX8]
Length = 185
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 63/107 (58%), Gaps = 1/107 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+APQ+GI+ Q+ V + + +++ L+NP + + K + EEGC
Sbjct: 50 MFESMYAAQGIGLAAPQIGISKQITVIDVSFKERPEDKLALINPEIIEREGKQV-EEEGC 108
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P I V R VK+ A+++ G F V +L AR QHE DHL
Sbjct: 109 LSLPEIREKVSRAARVKVRAQNVKGEFFEVEGEELLARALQHEIDHL 155
>gi|406983338|gb|EKE04552.1| hypothetical protein ACD_20C00051G0018 [uncultured bacterium]
Length = 194
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 62/109 (56%), Gaps = 3/109 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
+ D MY +G+GL+APQ+G + ++ V + IV VNP++ K S +I YE GC
Sbjct: 35 LMDTMYSQNGVGLAAPQLGESYRVFVIDTSTGDEPLNPIVFVNPKIIKKSGAIISYE-GC 93
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSD--LPARVFQHEFDHL 107
LSFP + +V R V I A+D G F++ D L AR QHE DHL
Sbjct: 94 LSFPEAYTNVRRYTDVVIRAKDDKGRPFTIEAKDGSLLARAIQHEMDHL 142
>gi|261405798|ref|YP_003242039.1| peptide deformylase [Paenibacillus sp. Y412MC10]
gi|261282261|gb|ACX64232.1| peptide deformylase [Paenibacillus sp. Y412MC10]
Length = 164
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 60/107 (56%), Gaps = 4/107 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY +G+GL+APQVGI +L+V + E G I ++NP + + + EGC
Sbjct: 35 MADTMYDAEGVGLAAPQVGILKRLIVIDAGDEHGL---IKMINPEIVESEGEQFG-PEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + DV R E V + D G ++ + L AR FQHE DHL
Sbjct: 91 LSIPGWNGDVRRAEKVTVKGLDREGNELVITGTGLLARAFQHEIDHL 137
>gi|262195424|ref|YP_003266633.1| peptide deformylase [Haliangium ochraceum DSM 14365]
gi|262078771|gb|ACY14740.1| peptide deformylase [Haliangium ochraceum DSM 14365]
Length = 175
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 57/109 (52%), Gaps = 2/109 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPV--GERGEGEEIVLVNPRVNKYSNKMIPYEE 58
+ D MY +G+G++A Q+G Q+ + P G E + +NP V S EE
Sbjct: 35 LVDTMYSLNGLGIAAVQIGDPTQMFIVEPALAGRDANDEPVAFINPEVVWTSEDSDKSEE 94
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
GCLSFPGI+ V+RP ++ A I+G F V L AR HE DHL
Sbjct: 95 GCLSFPGIYVQVDRPAKARVRALGIDGEIFEVEAEGLFARCLLHENDHL 143
>gi|379018782|ref|YP_005295016.1| peptide deformylase [Rickettsia rickettsii str. Hlp#2]
gi|376331362|gb|AFB28596.1| peptide deformylase [Rickettsia rickettsii str. Hlp#2]
Length = 175
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 64/113 (56%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN-----PVGERGEGEEIVLVNPRVNKYSNKMIP 55
M MY DG GL+A QVG+ +++V + V + + +VNP + + + +++
Sbjct: 35 MLKTMYHEDGAGLAAVQVGVLKRILVIDIQDHDSVARPKDFYPLFIVNPEIIEKAEELVT 94
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
EGC+S P H +V RPES+KI D +G + +D ARV QHE+DHL+
Sbjct: 95 ANEGCISLPEQHIEVARPESIKIRYLDYHGKSQELKANDWLARVIQHEYDHLE 147
>gi|359438231|ref|ZP_09228267.1| peptide deformylase [Pseudoalteromonas sp. BSi20311]
gi|359446419|ref|ZP_09236096.1| peptide deformylase [Pseudoalteromonas sp. BSi20439]
gi|392557232|ref|ZP_10304369.1| peptide deformylase [Pseudoalteromonas undina NCIMB 2128]
gi|358027070|dbj|GAA64516.1| peptide deformylase [Pseudoalteromonas sp. BSi20311]
gi|358039758|dbj|GAA72345.1| peptide deformylase [Pseudoalteromonas sp. BSi20439]
Length = 168
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 64/108 (59%), Gaps = 3/108 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +GIGL+A QV I+ +++V + ER E +VL+NP++ K + EEGC
Sbjct: 35 MLETMYDENGIGLAATQVDIHQRIVVIDVSEERDEP--LVLINPQIIKKDGSTVS-EEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS P +A V+R E+V + A + G F + +L A QHE DHLQ
Sbjct: 92 LSVPHSYAKVDRAETVTVAALNEEGKEFILDADELLAICIQHELDHLQ 139
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.141 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,817,259,166
Number of Sequences: 23463169
Number of extensions: 70668279
Number of successful extensions: 134787
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4787
Number of HSP's successfully gapped in prelim test: 841
Number of HSP's that attempted gapping in prelim test: 124956
Number of HSP's gapped (non-prelim): 5672
length of query: 112
length of database: 8,064,228,071
effective HSP length: 80
effective length of query: 32
effective length of database: 6,187,174,551
effective search space: 197989585632
effective search space used: 197989585632
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 69 (31.2 bits)