BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033765
(112 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FV54|DEF1B_SOLLC Peptide deformylase 1B, chloroplastic OS=Solanum lycopersicum
GN=PDF1B PE=2 SV=1
Length = 279
Score = 197 bits (502), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 90/108 (83%), Positives = 100/108 (92%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD+MYKTDGIGLSAPQVG+NVQLMVFN GERGEGEEIVLVNPRV++YS ++IPYEEGC
Sbjct: 118 MFDIMYKTDGIGLSAPQVGMNVQLMVFNAAGERGEGEEIVLVNPRVSRYSRRIIPYEEGC 177
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LSFP IH DV+RPESVK+DA+DING RF +SLS LPARVFQHEFDHLQ
Sbjct: 178 LSFPMIHGDVKRPESVKVDAQDINGTRFEISLSALPARVFQHEFDHLQ 225
>sp|Q9FUZ2|DEF1B_ARATH Peptide deformylase 1B, chloroplastic OS=Arabidopsis thaliana
GN=PDF1B PE=1 SV=2
Length = 273
Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 85/108 (78%), Positives = 101/108 (93%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVG+NVQLMVFNP GE GEG+EIVLVNP++ KYS+K++P++EGC
Sbjct: 112 MFDVMYKTDGIGLSAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGC 171
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LSFPGI+A+V RP+SVKIDARDI G RFS+SLS LPAR+FQHE+DHL+
Sbjct: 172 LSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLE 219
>sp|Q5VNN5|DEF1B_ORYSJ Peptide deformylase 1B, chloroplastic OS=Oryza sativa subsp.
japonica GN=PDF1B PE=2 SV=1
Length = 269
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 82/108 (75%), Positives = 94/108 (87%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVG+NVQLMVFNP G +GEGEEIVLVNP V K S +++ YEEGC
Sbjct: 109 MFDVMYKTDGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPVVYKMSKRLLVYEEGC 168
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LSFPGI+A+V RP++VKIDA+D+ GA+ V LS L ARVFQHEFDHLQ
Sbjct: 169 LSFPGIYANVVRPDNVKIDAQDVTGAKIKVKLSGLSARVFQHEFDHLQ 216
>sp|B1XJP0|DEF_SYNP2 Peptide deformylase OS=Synechococcus sp. (strain ATCC 27264 / PCC
7002 / PR-6) GN=def PE=3 SV=1
Length = 187
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 68/107 (63%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY + GIGL+APQVG+N +L+V + E +VL+NP + K+ ++ P+EEGC
Sbjct: 48 MLQTMYSSQGIGLAAPQVGVNKRLIVIDTDPENPANAPLVLINPEIKKFGQQLCPFEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG+H DV RP+ +++ RD G + S L +RV QHE DHL
Sbjct: 108 LSIPGVHLDVIRPDEIEVSYRDEQGKPKRIKASGLLSRVIQHEIDHL 154
>sp|Q8YSK6|DEF1_NOSS1 Peptide deformylase 1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=def1 PE=3 SV=1
Length = 187
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 72/113 (63%), Gaps = 2/113 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +DGIGL+APQVGIN QL+V + + ++L+NP + + S ++ +EGC
Sbjct: 48 MLQTMYSSDGIGLAAPQVGINKQLIVIDCEPDNPANPPLILINPTIKQVSREICSAQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS PG++ DV+RPE V++ +D NG ++ +DL R QHE DHL VFV
Sbjct: 108 LSIPGVYMDVKRPEVVEVAYKDENGRPQTLKATDLLGRCIQHEMDHLNGVVFV 160
>sp|Q7NIF5|DEF2_GLOVI Peptide deformylase 2 OS=Gloeobacter violaceus (strain PCC 7421)
GN=def2 PE=3 SV=1
Length = 187
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 67/107 (62%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG+N +++V + E +VL+NP + ++S+ + +EGC
Sbjct: 48 MLQTMYSADGIGLAAPQVGVNKRMIVVDIDPENAARPPLVLINPLIKQFSSDLAVDQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P I+ADV RPE V RD+NG ++ + L AR QHE DHL
Sbjct: 108 LSVPSIYADVRRPERVVATYRDLNGRPVTLEATGLLARCIQHEIDHL 154
>sp|P94601|DEF_FREDI Peptide deformylase OS=Fremyella diplosiphon GN=def PE=3 SV=1
Length = 187
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 71/113 (62%), Gaps = 2/113 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGI+ QL+V + + +VL+NP + + S ++ +EGC
Sbjct: 48 MLQTMYSKDGIGLAAPQVGIHKQLIVIDLEPDNPANPPLVLINPTIKQVSKEICVAQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ--VFV 111
LS P ++ DV+RPE V+I +D NG ++ +DL AR QHE DHL VFV
Sbjct: 108 LSIPNVYMDVKRPEVVEIAYKDENGRPKTLKATDLLARCIQHEMDHLNGVVFV 160
>sp|Q31DB4|DEF_PROM9 Peptide deformylase OS=Prochlorococcus marinus (strain MIT 9312)
GN=def PE=3 SV=1
Length = 201
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 63/107 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQ+GIN +L+V + E E ++L+NP + Y + YEEGC
Sbjct: 62 MIQSMYAAKGIGLAAPQIGINKELLVIDVNFEDSAAEPLILINPEITDYGTTLNSYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ +V RP ++K+ RD G + L AR QHE DHL
Sbjct: 122 LSIPGVYLNVVRPSTIKLKFRDEMGRPRKMKADGLLARCIQHEMDHL 168
>sp|P73441|DEF_SYNY3 Peptide deformylase OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=def PE=3 SV=1
Length = 187
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 69/107 (64%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +GIGL+APQVGIN QL+V + ++ + ++++NP++ + S ++ EEGC
Sbjct: 48 MLQTMYSANGIGLAAPQVGINKQLLVVDCEQDKPDEPPLIMINPQITRTSEELCVVEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P ++ DV RP ++++ +D +G ++L ARV QHE DHL
Sbjct: 108 LSVPNVYMDVTRPRAIEVTYKDEHGRPQKRLFAELTARVIQHEMDHL 154
>sp|Q7VED2|DEF_PROMA Peptide deformylase OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=def PE=3 SV=1
Length = 203
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 64/107 (59%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQ+G QL+V + E I+L+NP + ++S + YEEGC
Sbjct: 62 MLHSMYAAKGIGLAAPQIGSQQQLLVIDLDIENSATPPIILINPEITEFSATIDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV RP S+K++ RD G ++ L AR QHE DHL
Sbjct: 122 LSIPGVYLDVIRPSSIKVNFRDEMGRPKKINADGLLARCIQHEMDHL 168
>sp|A2BNK7|DEF_PROMS Peptide deformylase OS=Prochlorococcus marinus (strain AS9601)
GN=def PE=3 SV=1
Length = 201
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 63/107 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQ+GIN +L+V + E E ++L+NP + + + YEEGC
Sbjct: 62 MLQSMYAAKGIGLAAPQIGINKELLVIDVNFEDSAAEPLILINPEITDFGTTLNSYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ +V RP ++K+ RD G + L AR QHE DHL
Sbjct: 122 LSIPGVYLNVVRPSTIKLKFRDEMGRPRKMKADGLLARCIQHEMDHL 168
>sp|Q7V3K7|DEF_PROMP Peptide deformylase OS=Prochlorococcus marinus subsp. pastoris
(strain CCMP1986 / MED4) GN=def PE=3 SV=1
Length = 201
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 62/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQ+GI +L+V + E E ++L+NP + Y + YEEGC
Sbjct: 62 MLQSMYAAKGIGLAAPQIGIKKELLVIDVNFEDAAAEPLILINPEITDYGTTLNSYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ +V RP ++K+ RD G + L AR QHE DHL
Sbjct: 122 LSIPGVYLNVVRPSTIKLRFRDEMGRPRKMKADGLLARCIQHEMDHL 168
>sp|Q7UHZ5|DEF_RHOBA Peptide deformylase OS=Rhodopirellula baltica (strain SH1) GN=def
PE=3 SV=1
Length = 201
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D+MY+ DG+GL+A QV + +++ V NP G+R EGE V++NP +++ +EGC
Sbjct: 34 MLDLMYEFDGVGLAANQVDLPIRMFVANPTGKRDEGESWVILNPEIDRPKGNDTA-QEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ V+RP++V++ D+ G + L ARV QHE DHL
Sbjct: 93 LSVPGLYGQVKRPKTVRLRGFDLQGNEINQVLDGFMARVVQHEVDHL 139
>sp|A2BU25|DEF_PROM5 Peptide deformylase OS=Prochlorococcus marinus (strain MIT 9515)
GN=def PE=3 SV=1
Length = 203
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 65/108 (60%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVGI+ +L+V + E E ++L+NP + + N + YEEGC
Sbjct: 62 MLKSMYSAKGIGLAAPQVGISKELLVIDINFEDSAAEPLILINPEITAFGNTLNSYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG++ +V RP ++K+ D G ++ L AR QHE DHL+
Sbjct: 122 LSIPGVYLNVVRPSTIKLRFSDEMGRPRKMNADGLLARCIQHEVDHLR 169
>sp|Q7U9D4|DEF_SYNPX Peptide deformylase OS=Synechococcus sp. (strain WH8102) GN=def
PE=3 SV=1
Length = 201
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 63/107 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVGI+ QL+V + E +VL+NP ++ S + YEEGC
Sbjct: 62 MLRSMYTAKGIGLAAPQVGIHQQLLVIDLDLENAATPPLVLINPEISAASASIDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV RP ++++ RD G + L AR QHE DHL
Sbjct: 122 LSIPGVYLDVVRPTAIELSFRDEMGRPRKMKADGLMARCIQHEMDHL 168
>sp|O66847|DEF_AQUAE Peptide deformylase OS=Aquifex aeolicus (strain VF5) GN=def PE=3
SV=1
Length = 169
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 72/109 (66%), Gaps = 2/109 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPV-GERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
MFD MY+ +G+GL+A Q+G+ + +MV + E ++VL+NP + + K I Y+EG
Sbjct: 34 MFDTMYEAEGVGLAANQIGVPLSVMVIDTSPKEDAPPLKLVLINPEIKEGEGK-IKYKEG 92
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
CLSFPG+ +VER + VK++A + +G ++L PA VFQHE DHL+
Sbjct: 93 CLSFPGLSVEVERFQKVKVNALNEHGEPVELTLEGFPAIVFQHELDHLK 141
>sp|Q3AHC4|DEF_SYNSC Peptide deformylase OS=Synechococcus sp. (strain CC9605) GN=def
PE=3 SV=1
Length = 201
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 62/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVGI+ QL+V + E +VL+NP + S + YEEGC
Sbjct: 62 MLRSMYTAKGIGLAAPQVGIHQQLLVIDLDLENAATPPLVLINPEITAASAGLDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV RP ++++ RD G + L AR QHE DHL
Sbjct: 122 LSIPGVYLDVVRPTAIELSFRDEMGRPRKMKADGLMARCIQHEMDHL 168
>sp|Q8DIB4|DEF_THEEB Peptide deformylase OS=Thermosynechococcus elongatus (strain BP-1)
GN=def PE=3 SV=1
Length = 188
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 65/107 (60%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGIN Q++V + + E E +V++NP + +S ++ +EGC
Sbjct: 48 MLQTMYSADGIGLAAPQVGINKQILVIDIHPDDPEAEPLVMINPVIKDFSEELEVCQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ +V RP V++ +D G + L AR QHE DHL
Sbjct: 108 LSIPGVYLEVRRPAMVEVSYKDEWGRPQVIMAGGLLARAIQHEIDHL 154
>sp|Q0I7A5|DEF_SYNS3 Peptide deformylase OS=Synechococcus sp. (strain CC9311) GN=def
PE=3 SV=1
Length = 202
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 64/108 (59%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVG++ QL+V + E +VL+NP + S + YEEGC
Sbjct: 62 MLRSMYTASGIGLAAPQVGVHQQLLVIDLDFETPSTPPLVLINPEITTCSASVDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG++ DV RP ++++ RD G ++ L AR QHE DHL+
Sbjct: 122 LSIPGVYLDVVRPTAIQLSFRDEMGRPRTMKADGLMARCIQHEMDHLR 169
>sp|Q0VTE1|DEF_ALCBS Peptide deformylase OS=Alcanivorax borkumensis (strain SK2 / ATCC
700651 / DSM 11573) GN=def PE=3 SV=1
Length = 168
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV +++QL+V + + +V +NP++ + + PYEEGC
Sbjct: 35 MFETMYAAPGIGLAATQVDVHIQLIVMD--LSEDHNKPMVFINPQITPLTEEQAPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + V RP V+I+A D +G F V +L A QHE DHL
Sbjct: 93 LSVPGFYEKVTRPARVRINALDRDGNAFEVEADELLATCIQHEMDHL 139
>sp|B0VNL8|DEF_ACIBS Peptide deformylase OS=Acinetobacter baumannii (strain SDF) GN=def
PE=3 SV=1
Length = 176
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++QL+V + + E +V +NP+V + + PYEEGC
Sbjct: 35 MFETMYAAPGIGLAASQVDRHIQLIVMD--LSESKDEPMVFINPKVTPLTEETQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P I+ V+RP VKI+A ++ G F + L A QHE DHL
Sbjct: 93 LSVPQIYDKVDRPSRVKIEAINLEGQAFEIEADGLLAVCIQHEMDHL 139
>sp|O51092|DEF_BORBU Peptide deformylase OS=Borrelia burgdorferi (strain ATCC 35210 /
B31 / CIP 102532 / DSM 4680) GN=def PE=3 SV=2
Length = 165
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M + G+GL+APQVG+++ L V V E +V +NP + + S + Y+EGC
Sbjct: 32 MIELMDISGGVGLAAPQVGLDLALFV---VRENKMARPLVFINPSIIETSYEFSSYKEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ D+ RP++V I+ D NG F++ SD AR+ QHE DHL
Sbjct: 89 LSIPGVYYDLMRPKAVVINFHDENGKSFTIENSDFLARIIQHEMDHL 135
>sp|B3QPU5|DEF_CHLP8 Peptide deformylase OS=Chlorobaculum parvum (strain NCIB 8327)
GN=def PE=3 SV=1
Length = 187
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 3/109 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMV--FNPVGERGEGEEIVLVNPRVNKYSNKMIPYEE 58
MFD MYK GIGL+APQVG +++L+V + + E + + +V++NPR+ + + EE
Sbjct: 34 MFDSMYKAPGIGLAAPQVGHSLRLLVVDISTIKEYADYKPMVVINPRIVSVAGRNA-MEE 92
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
GCLS PG+ DV RP + + RD + SD+ ARV QHE DHL
Sbjct: 93 GCLSVPGVAGDVVRPSKITLHYRDEKFEEHTEEFSDMMARVLQHEIDHL 141
>sp|Q3AZU8|DEF_SYNS9 Peptide deformylase OS=Synechococcus sp. (strain CC9902) GN=def
PE=3 SV=1
Length = 201
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 60/107 (56%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQV + QL+V + E +VL+NP + S + YEEGC
Sbjct: 62 MLRSMYTAKGIGLAAPQVAVYQQLLVIDLDLENAATPPLVLINPEITAASAGLDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ DV RP ++++ RD G + L AR QHE DHL
Sbjct: 122 LSIPGVYLDVVRPTAIELSYRDEMGRPRKMKADGLMARCIQHEMDHL 168
>sp|Q88RR1|DEF1_PSEPK Peptide deformylase 1 OS=Pseudomonas putida (strain KT2440) GN=def1
PE=3 SV=1
Length = 168
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 67/107 (62%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ Q++V + +R E V +NP V + ++ M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKQVVVMDLSEDRSEPR--VFINPSVEELTHDMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP V++ A+D +G F + L A QHEFDHL
Sbjct: 93 LSVPGFYENVDRPLRVRVKAQDRDGKPFELECEGLLAVCVQHEFDHL 139
>sp|Q46HV9|DEF_PROMT Peptide deformylase OS=Prochlorococcus marinus (strain NATL2A)
GN=def PE=3 SV=1
Length = 202
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 62/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY + GIGL+APQVGI +L+V + E +V +NP + S + YEEGC
Sbjct: 62 MLITMYSSKGIGLAAPQVGIQKRLLVIDLKFEDPNSPPMVFINPEIISSSATLDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ +V RP S+K+ RD G ++ L AR QHE DHL
Sbjct: 122 LSIPGVYLNVLRPSSIKLSYRDEMGRPKKMNADGLMARCIQHEIDHL 168
>sp|Q823U4|DEF_CHLCV Peptide deformylase OS=Chlamydophila caviae (strain GPIC) GN=def
PE=3 SV=1
Length = 186
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 67/114 (58%), Gaps = 6/114 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M++ M G+GL+APQVG ++ L V GE EG+ I V +NP ++ S ++
Sbjct: 34 MYETMVAHKGVGLAAPQVGESLSLFVMCVEGETEEGDLIFCDFPKVYINPVLSNPSEDLV 93
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
EGCLS PG+ ADV RP+S+ + A +++G F+ L PAR+ HE DHL
Sbjct: 94 IGREGCLSIPGLRADVYRPQSITVTAVNLDGQEFTEHLEGFPARIIMHENDHLH 147
>sp|A2BZN6|DEF_PROM1 Peptide deformylase OS=Prochlorococcus marinus (strain NATL1A)
GN=def PE=3 SV=1
Length = 202
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 62/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY + GIGL+APQVGI +L+V + E +V +NP + S + YEEGC
Sbjct: 62 MLITMYSSKGIGLAAPQVGIQKRLLVIDLNFEDPNSPPMVFINPEIISSSATVDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ +V RP S+K+ RD G ++ L AR QHE DHL
Sbjct: 122 LSIPGVYLNVLRPSSIKLSYRDEMGRPKKMNADGLMARCIQHEIDHL 168
>sp|C1F541|DEF_ACIC5 Peptide deformylase OS=Acidobacterium capsulatum (strain ATCC 51196
/ DSM 11244 / JCM 7670) GN=def PE=3 SV=1
Length = 170
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 65/107 (60%), Gaps = 1/107 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+APQ+GI+ +L V + + E+IVL+NP + + EEGC
Sbjct: 35 MFESMYEAKGIGLAAPQIGISKRLTVIDLSFKENPDEKIVLINPEIIHREGRQYE-EEGC 93
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P I V R E V + A++++G F + +L +R FQHE DHL
Sbjct: 94 LSLPDIREKVVRAEKVTVRAQNLDGEWFEMDGEELLSRAFQHEIDHL 140
>sp|Q253S4|DEF_CHLFF Peptide deformylase OS=Chlamydophila felis (strain Fe/C-56) GN=def
PE=3 SV=1
Length = 186
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 67/114 (58%), Gaps = 6/114 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M++ M G+GL+APQVG ++ L V GE +G+ I V +NP ++ S ++
Sbjct: 34 MYETMVAHKGVGLAAPQVGESLSLFVVCVEGETEDGDLIFCDFPKVYINPVLSNASEDLV 93
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
EGCLS PG+ ADV RP+S+ + A +++G F+ L PAR+ HE DHL
Sbjct: 94 IGREGCLSIPGLRADVYRPQSITVTALNLDGQEFTEHLEGFPARIIMHENDHLH 147
>sp|Q92SH6|DEF_RHIME Peptide deformylase OS=Rhizobium meliloti (strain 1021) GN=def PE=3
SV=2
Length = 174
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 63/107 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +L+V + E E + +V +NP+V + S + YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPKRLLVLDVTKEGEEKQPLVFINPKVVRSSEERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP ++ ++ D G +V L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPAAITVEYVDREGKEQAVEAEGLLATCLQHEIDHL 141
>sp|P63914|DEF_BRUSU Peptide deformylase OS=Brucella suis biovar 1 (strain 1330) GN=def
PE=3 SV=1
Length = 175
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 63/107 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY GIGL+A QVG ++++V + E + VNP + + S+K YEEGC
Sbjct: 35 MFDTMYDAPGIGLAAIQVGEPIRMLVIDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP +VK++ D +G S+ L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPATVKVNYFDADGKPQSMEADGLMATCLQHEIDHL 141
>sp|P63913|DEF_BRUME Peptide deformylase OS=Brucella melitensis biotype 1 (strain 16M /
ATCC 23456 / NCTC 10094) GN=def PE=3 SV=1
Length = 175
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 63/107 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY GIGL+A QVG ++++V + E + VNP + + S+K YEEGC
Sbjct: 35 MFDTMYDAPGIGLAAIQVGEPIRMLVIDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP +VK++ D +G S+ L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPATVKVNYFDADGKPQSMEADGLMATCLQHEIDHL 141
>sp|Q5L6G8|DEF_CHLAB Peptide deformylase OS=Chlamydophila abortus (strain S26/3) GN=def
PE=3 SV=1
Length = 184
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 66/113 (58%), Gaps = 6/113 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M++ M G+GL+APQVG +V L V GE +G+ I V +NP ++ S ++
Sbjct: 34 MYETMVAHKGVGLAAPQVGESVSLFVMCVEGETEDGDLIFCDFPKVYINPVLSNVSEDLV 93
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
EGCLS PG+ ADV RP S+ + A +++G F+ L PAR+ HE DHL
Sbjct: 94 LGREGCLSIPGLRADVYRPRSITVKAINLDGQEFTEHLEGFPARIVMHENDHL 146
>sp|Q7V5F9|DEF2_PROMM Peptide deformylase 2 OS=Prochlorococcus marinus (strain MIT 9313)
GN=def2 PE=3 SV=1
Length = 201
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 61/108 (56%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVGI+ QL+V + E +VL+NP + S + YEEGC
Sbjct: 62 MLRSMYAAKGIGLAAPQVGIHKQLLVLDLDLETPTTPPVVLINPEIISSSATVETYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS PG++ +V RP + + RD G + L AR QHE DHL+
Sbjct: 122 LSIPGVYLNVVRPSEIVLSFRDEMGRPRKMKADGLMARCIQHEMDHLE 169
>sp|Q1LT56|DEF_BAUCH Peptide deformylase OS=Baumannia cicadellinicola subsp. Homalodisca
coagulata GN=def PE=3 SV=1
Length = 167
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 67/107 (62%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY +GIGL+APQV IN+ ++V + V E E + +VL+NP + S + EGC
Sbjct: 35 MFDTMYHKNGIGLAAPQVNINLNIIVID-VSENKE-QRLVLINPELLAKSGET-GIHEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P H V R +++K+ A D+NG F++ +DL A QHE DHL
Sbjct: 92 LSIPEQHGFVPRAKNIKVRALDLNGNSFNLETNDLQAICIQHEMDHL 138
>sp|A8F524|DEF_THELT Peptide deformylase OS=Thermotoga lettingae (strain ATCC BAA-301 /
DSM 14385 / TMO) GN=def PE=3 SV=1
Length = 171
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 6/108 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
+F+ MY TDGIGL+APQ+G+++++ V + +G+ V +NP + S + EEGC
Sbjct: 34 LFETMYATDGIGLAAPQIGVSLRIFVMD------DGKPRVFINPEIIYKSEEKEIAEEGC 87
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LS P + DVER + V + + +G S D ARV QHE+DHLQ
Sbjct: 88 LSVPEVFEDVERSKEVTVRYMNEHGEEVEESFVDYSARVVQHEYDHLQ 135
>sp|B9K7G9|DEF_THENN Peptide deformylase OS=Thermotoga neapolitana (strain ATCC 49049 /
DSM 4359 / NS-E) GN=def PE=3 SV=1
Length = 164
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 65/107 (60%), Gaps = 5/107 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY DG+GL+APQVGI+ + V + G G + ++NP + + S + EEGC
Sbjct: 33 MIETMYHYDGVGLAAPQVGISQRFFVMDV----GNGP-VAVINPEILEASPETEIAEEGC 87
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFP I ++ER + VK+ +++ G L PARVFQHEFDHL
Sbjct: 88 LSFPEIFVEIERSKRVKVRYQNVRGEFVEEELEGYPARVFQHEFDHL 134
>sp|Q057D2|DEF_BUCCC Peptide deformylase OS=Buchnera aphidicola subsp. Cinara cedri
(strain Cc) GN=def PE=3 SV=1
Length = 149
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY +GIGL+APQ+ I Q++V + + + E+VL+NP + K + K I EGC
Sbjct: 35 MFDTMYANNGIGLAAPQINILKQIIVISSL--KPTMSELVLINPVILKKNKKYINTIEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P A ++R +KI A + G F+++ L + QHE DHL
Sbjct: 93 LSIPKKTAKIKRSSCIKIQAINTYGKSFTLTAKSLLSICIQHEIDHL 139
>sp|Q8KCG7|DEF_CHLTE Peptide deformylase OS=Chlorobium tepidum (strain ATCC 49652 / DSM
12025 / TLS) GN=def PE=3 SV=1
Length = 187
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 66/109 (60%), Gaps = 3/109 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMV--FNPVGERGEGEEIVLVNPRVNKYSNKMIPYEE 58
MFD MYK GIGL+APQVG +++L+V + + E + + +V++NPR+ + + EE
Sbjct: 34 MFDTMYKAPGIGLAAPQVGHSLRLVVVDISTIKEYADFKPMVVINPRIVAVRGRSL-MEE 92
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
GCLS PGI +V RP ++ + RD + + ARV QHE DHL
Sbjct: 93 GCLSVPGIAGNVVRPSAITLHYRDEKFEEHTADFHSMMARVLQHEIDHL 141
>sp|Q5QXI5|DEF_IDILO Peptide deformylase OS=Idiomarina loihiensis (strain ATCC BAA-735 /
DSM 15497 / L2-TR) GN=def PE=3 SV=1
Length = 174
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 64/107 (59%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ G+GL+A QV ++ +L V + + E +V +NP + + + +EGC
Sbjct: 35 MFETMYEEQGVGLAATQVDVHRRLFVSD--CSEDQNEPLVFINPEITE-AEGHFKNDEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LSFPG++A VER E + + A D NG RFS S L A QHE DHL
Sbjct: 92 LSFPGVYAKVERAERITVTALDKNGERFSRSAEGLLAICIQHEIDHL 138
>sp|Q9ZDV8|DEF_RICPR Peptide deformylase OS=Rickettsia prowazekii (strain Madrid E)
GN=def PE=3 SV=1
Length = 175
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMV-----FNPVGERGEGEEIVLVNPRVNKYSNKMIP 55
M + MY DG GL+A QVGI ++++V ++PV + + +VNP + + S +++
Sbjct: 35 MLETMYNADGAGLAAVQVGILLRILVIDIKEYDPVERPKDFYPLFIVNPEIIEKSTELVT 94
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
EGC+S P +V RPESVKI D +G + +D ARV QHE+DHL+
Sbjct: 95 ANEGCISLPKQRIEVTRPESVKIRYLDYHGKSQELKANDWLARVIQHEYDHLE 147
>sp|Q67PR5|DEF_SYMTH Peptide deformylase OS=Symbiobacterium thermophilum (strain T / IAM
14863) GN=def PE=3 SV=1
Length = 217
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 64/107 (59%), Gaps = 3/107 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+APQVG++ +L+V +P + G G+ L+NP + K + + EGC
Sbjct: 35 MTETMYAAPGVGLAAPQVGVSKRLIVVDP--QDGSGQLYQLINPEIVK-AEGWVKGTEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG+ DV R E V++ A D G + + AR+FQHE DHL
Sbjct: 92 LSIPGMVGDVWRYEKVQVVALDRTGKKVWIDAEGYLARIFQHEIDHL 138
>sp|Q8UID1|DEF_AGRT5 Peptide deformylase OS=Agrobacterium tumefaciens (strain C58 / ATCC
33970) GN=def PE=3 SV=1
Length = 170
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 62/107 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E +V +NP + K S+ + YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRMLVIDVAREGEEKTPVVFINPEILKVSDDISTYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P +A+VERP S+ + +G + +V L A QHE DHL
Sbjct: 95 LSIPDYYAEVERPASLTVQYVGRDGKQQTVEADGLLATCLQHEIDHL 141
>sp|Q88B43|DEF1_PSESM Peptide deformylase 1 OS=Pseudomonas syringae pv. tomato (strain
DC3000) GN=def1 PE=3 SV=1
Length = 168
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 67/107 (62%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R +V +NP + K +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSAP--MVFINPEIEKLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ V++ A D +G + + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVRVKALDRDGKPYELVAEGLLAICIQHECDHL 139
>sp|Q1QET1|DEF_PSYCK Peptide deformylase OS=Psychrobacter cryohalolentis (strain K5)
GN=def PE=3 SV=1
Length = 184
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QV ++QL+V + ++ V +NP+V + PYEEGC
Sbjct: 35 MIETMYDAQGIGLAASQVDHHIQLIVMDLSEDKDSPR--VFINPKVTPLVEEKQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS P ++ VERP V+I+A D NG + + L A QHE DHL
Sbjct: 93 LSVPDVYDKVERPNKVRIEALDENGNKIDEEVEGLLAVCIQHEMDHL 139
>sp|C1DFV8|DEF_AZOVD Peptide deformylase OS=Azotobacter vinelandii (strain DJ / ATCC
BAA-1303) GN=def PE=3 SV=1
Length = 168
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++ +L+V + ++ E V +NP + ++ PY+EGC
Sbjct: 35 MFETMYAAPGIGLAATQVNVHKRLVVMDLSEDKNEPR--VFINPEFEALTEELEPYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG + +V+RP+ V+I A D +G F + L A QHE DHL
Sbjct: 93 LSVPGFYENVDRPQKVRIRALDRDGQPFELVAEGLLAVCIQHECDHL 139
>sp|A5GQU9|DEF_SYNR3 Peptide deformylase OS=Synechococcus sp. (strain RCC307) GN=def
PE=3 SV=1
Length = 201
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 58/107 (54%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVG++ QL+V + E +VL+NP + S + YEEGC
Sbjct: 62 MLRSMYAAHGIGLAAPQVGVHQQLLVIDLDPEEAANPPLVLINPEIVATSGALDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
LS PG++ +V RP V + RD G L AR HE DHL
Sbjct: 122 LSIPGVYLNVVRPSQVDVKYRDELGRPQRRKADGLMARCILHEMDHL 168
>sp|B5YIL7|DEF_THEYD Peptide deformylase OS=Thermodesulfovibrio yellowstonii (strain
ATCC 51303 / DSM 11347 / YP87) GN=def PE=3 SV=1
Length = 165
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +GIGL+APQVG+ +L+V + IVL+NP + +++ EEGC
Sbjct: 35 MIETMYNANGIGLAAPQVGVLKRLIVVDTSPREQNQSLIVLINPEITDSEGEILS-EEGC 93
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112
LS PG ++R E V + D NG + + L AR QHE DHL +L
Sbjct: 94 LSLPGFTTRLKRKERVIVKGLDRNGKEIEIEATGLLARALQHEIDHLDGILL 145
>sp|B3ETT4|DEF_AMOA5 Peptide deformylase OS=Amoebophilus asiaticus (strain 5a2) GN=def
PE=3 SV=1
Length = 188
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 64/114 (56%), Gaps = 7/114 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEG------EEIVLVNPRVNKYS-NKM 53
MF M G+GL+APQ+G ++QL V + G+G V +NP + Y N +
Sbjct: 33 MFITMNAAKGLGLAAPQIGKSIQLFVVDVSPFVGDGMVQPDKHRKVYINPVLEIYQPNTI 92
Query: 54 IPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
YEEGCLS PGI+ DV R + V+I D N L D+PARV QHE+DHL
Sbjct: 93 THYEEGCLSIPGIYVDVPRNKRVRIKFFDRNWQAQEEDLVDMPARVVQHEYDHL 146
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.141 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,777,213
Number of Sequences: 539616
Number of extensions: 1735121
Number of successful extensions: 4226
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 3342
Number of HSP's gapped (non-prelim): 489
length of query: 112
length of database: 191,569,459
effective HSP length: 80
effective length of query: 32
effective length of database: 148,400,179
effective search space: 4748805728
effective search space used: 4748805728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)