Query 033765
Match_columns 112
No_of_seqs 121 out of 1092
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 06:03:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033765.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033765hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0242 Def N-formylmethionyl- 100.0 1.4E-53 3E-58 309.9 9.8 112 1-112 35-147 (168)
2 cd00487 Pep_deformylase Polype 100.0 5.3E-53 1.2E-57 299.4 10.7 112 1-112 30-141 (141)
3 PRK14595 peptide deformylase; 100.0 5.1E-52 1.1E-56 300.5 9.8 108 1-112 35-142 (162)
4 PRK12846 peptide deformylase; 100.0 6.4E-52 1.4E-56 300.7 10.4 110 1-112 36-145 (165)
5 TIGR00079 pept_deformyl peptid 100.0 1.7E-51 3.7E-56 297.5 9.7 111 1-112 33-143 (161)
6 PRK14597 peptide deformylase; 100.0 1.5E-51 3.2E-56 299.1 9.4 107 1-112 32-138 (166)
7 PRK00150 def peptide deformyla 100.0 3.8E-51 8.3E-56 296.6 10.2 110 1-112 35-145 (165)
8 PRK14598 peptide deformylase; 100.0 4.6E-51 1E-55 301.3 9.6 111 1-112 34-146 (187)
9 PF01327 Pep_deformylase: Poly 100.0 2.4E-51 5.3E-56 294.9 7.4 112 1-112 34-147 (156)
10 PRK14596 peptide deformylase; 100.0 6.4E-50 1.4E-54 297.6 10.1 111 1-112 34-158 (199)
11 PRK09218 peptide deformylase; 100.0 8.3E-50 1.8E-54 281.9 9.6 105 1-112 30-136 (136)
12 KOG3137 Peptide deformylase [T 100.0 8.4E-42 1.8E-46 255.6 5.3 112 1-112 113-238 (267)
13 COG4740 Predicted metalloprote 98.4 1.5E-07 3.3E-12 67.5 1.5 71 37-109 74-159 (176)
14 PF13670 PepSY_2: Peptidase pr 67.1 12 0.00026 23.5 3.8 32 72-103 52-83 (83)
15 smart00666 PB1 PB1 domain. Pho 57.7 7.8 0.00017 23.8 1.7 29 74-102 39-67 (81)
16 PF11730 DUF3297: Protein of u 53.9 18 0.0004 22.8 2.9 39 50-95 28-66 (71)
17 cd03074 PDI_b'_Calsequestrin_C 48.9 6.7 0.00015 27.2 0.3 19 2-20 69-87 (120)
18 cd06401 PB1_TFG The PB1 domain 47.0 20 0.00043 23.3 2.3 27 72-98 40-66 (81)
19 cd06404 PB1_aPKC PB1 domain is 44.6 25 0.00054 23.0 2.5 38 55-92 14-57 (83)
20 PF04986 Y2_Tnp: Putative tran 41.6 29 0.00062 25.2 2.8 45 58-104 116-163 (183)
21 cd06398 PB1_Joka2 The PB1 doma 40.8 24 0.00053 23.0 2.1 31 72-102 42-72 (91)
22 cd06396 PB1_NBR1 The PB1 domai 39.1 27 0.00058 22.6 2.0 21 75-95 39-59 (81)
23 cd06402 PB1_p62 The PB1 domain 38.3 48 0.001 21.6 3.1 24 74-97 46-69 (87)
24 cd06407 PB1_NLP A PB1 domain i 38.0 29 0.00062 22.2 2.0 26 74-99 39-64 (82)
25 COG2941 CAT5 Ubiquinone biosyn 36.6 11 0.00024 28.4 -0.1 11 98-108 78-88 (204)
26 cd05992 PB1 The PB1 domain is 34.6 30 0.00064 21.0 1.7 29 74-102 39-67 (81)
27 PF06486 DUF1093: Protein of u 34.3 56 0.0012 20.2 2.9 20 76-95 30-49 (78)
28 cd06409 PB1_MUG70 The MUG70 pr 34.3 46 0.001 21.7 2.6 31 72-102 40-70 (86)
29 COG2916 Hns DNA-binding protei 32.0 16 0.00036 25.6 0.2 34 73-106 85-118 (128)
30 PF14657 Integrase_AP2: AP2-li 31.4 94 0.002 17.2 3.3 23 75-97 3-26 (46)
31 PTZ00490 Ferredoxin superfamil 30.2 96 0.0021 22.0 3.9 26 68-93 28-53 (143)
32 KOG2449 Methylmalonate semiald 29.2 50 0.0011 23.9 2.2 36 73-108 99-135 (157)
33 TIGR01655 yxeA_fam conserved h 29.1 87 0.0019 21.1 3.4 21 74-94 55-75 (114)
34 smart00204 TGFB Transforming g 28.9 93 0.002 20.4 3.4 35 63-97 62-96 (102)
35 PF00564 PB1: PB1 domain; Int 28.4 28 0.0006 21.3 0.8 28 73-100 39-66 (84)
36 PF08770 SoxZ: Sulphur oxidati 25.6 2E+02 0.0044 18.9 5.0 55 38-92 39-98 (100)
37 PF15507 DUF4649: Domain of un 24.5 81 0.0018 20.0 2.3 24 76-99 1-24 (72)
38 KOG1349 Gpi-anchor transamidas 23.4 62 0.0013 25.7 2.0 48 56-104 260-307 (309)
39 KOG3309 Ferredoxin [Energy pro 22.9 1.6E+02 0.0035 21.4 3.9 19 74-92 42-60 (159)
40 PF13582 Reprolysin_3: Metallo 22.5 37 0.00081 22.2 0.6 16 95-110 106-121 (124)
41 PF11296 DUF3097: Protein of u 21.3 1.1E+02 0.0025 24.0 3.0 44 37-81 73-116 (275)
42 PF06004 DUF903: Bacterial pro 21.0 1.3E+02 0.0028 17.6 2.6 17 77-93 26-42 (50)
43 PF04580 Pox_D3: Chordopoxviri 20.6 99 0.0021 24.1 2.6 33 19-51 117-149 (246)
44 KOG0782 Predicted diacylglycer 20.5 85 0.0018 27.9 2.4 24 23-46 353-376 (1004)
45 PRK10328 DNA binding protein, 20.5 42 0.00091 23.6 0.5 32 74-105 93-124 (134)
46 PF08363 GbpC: Glucan-binding 20.4 84 0.0018 24.8 2.2 20 74-93 158-177 (283)
No 1
>COG0242 Def N-formylmethionyl-tRNA deformylase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-53 Score=309.94 Aligned_cols=112 Identities=38% Similarity=0.689 Sum_probs=105.6
Q ss_pred ChhhhhcCCCeEEeccccCccceEEEEEeCCCC-CCCceeEEEcceeeeeCCceecCeeccceeCCCceeeccCCeeEEE
Q 033765 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGER-GEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKID 79 (112)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~-~~~~~~v~iNP~I~~~s~~~~~~~EgClS~p~~~~~V~R~~~I~v~ 79 (112)
|++|||+++|+||||||||+++|+||++..++. ....+.+||||+|++.|.+....+|||||+||+++.|+||.+|+|+
T Consensus 35 M~etm~~~~GVGLAApQIGi~kri~vi~~~~~~~~~~~~~vlINP~I~~~~~~~~~~~EGCLSvP~~~~~V~R~~~I~V~ 114 (168)
T COG0242 35 MLETMYAAEGVGLAAPQIGISKRIFVIDVEEDGRPKEPPLVLINPEIISKSEETLTGEEGCLSVPGVRGEVERPERITVK 114 (168)
T ss_pred HHHHHHhCCCeeeeehhcCceeeEEEEEccCccCcCcCceEEECCEEeecCCcccccCcceEeecCceeeeecccEEEEE
Confidence 899999999999999999999999999997643 2345689999999999888889999999999999999999999999
Q ss_pred EEcCCCCEEEEEEeccceehhhhhhhhcCcccC
Q 033765 80 ARDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112 (112)
Q Consensus 80 ~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~lf 112 (112)
|+|++|++++++++||+|||+|||+|||||+||
T Consensus 115 ~~D~~G~~~~~~a~G~lA~~iQHEiDHLnGvlf 147 (168)
T COG0242 115 YLDRNGKPQELEAEGLLARCIQHEIDHLNGVLF 147 (168)
T ss_pred EEcCCCCEEEEEEcCceeEEeEeeccccCcEEe
Confidence 999999999999999999999999999999998
No 2
>cd00487 Pep_deformylase Polypeptide or peptide deformylase; a family of metalloenzymes that catalyzes the removal of the N-terminal formyl group in a growing polypeptide chain following translation initiation during protein synthesis in prokaryotes. These enzymes utilize Fe(II) as the catalytic metal ion, which can be replaced with a nickel or cobalt ion with no loss of activity. There are two types of peptide deformylases, types I and II, which differ in structure only in the outer surface of the domain. Because these enzymes are essential only in prokaryotes (although eukaryotic gene sequences have been found), they are a target for a new class of antibacterial agents.
Probab=100.00 E-value=5.3e-53 Score=299.41 Aligned_cols=112 Identities=37% Similarity=0.667 Sum_probs=105.1
Q ss_pred ChhhhhcCCCeEEeccccCccceEEEEEeCCCCCCCceeEEEcceeeeeCCceecCeeccceeCCCceeeccCCeeEEEE
Q 033765 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (112)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~iNP~I~~~s~~~~~~~EgClS~p~~~~~V~R~~~I~v~~ 80 (112)
|++||++++|+||||||||+++|+||++.++.....++.+||||+|+..|++....+|||||+||+++.|+||.+|+|+|
T Consensus 30 m~~tm~~~~gvGLAApQIG~~~ri~vv~~~~~~~~~~~~v~INP~I~~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~v~~ 109 (141)
T cd00487 30 MFETMYAAPGVGLAAPQIGVSKRIFVIDVPDEENKEPPLVLINPEIIESSGETEYGEEGCLSVPGYRGEVERPKKVTVRY 109 (141)
T ss_pred HHHHHHhCCCcEEEhhhcCCceeEEEEEcccccccccceEEECCeEeccCCCEeeCCcCCcCcCCcceEecCcCEEEEEE
Confidence 78999999999999999999999999998654223457899999999999998878999999999999999999999999
Q ss_pred EcCCCCEEEEEEeccceehhhhhhhhcCcccC
Q 033765 81 RDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112 (112)
Q Consensus 81 ~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~lf 112 (112)
+|++|++++.+++||+|||+|||+|||+|+||
T Consensus 110 ~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~ 141 (141)
T cd00487 110 LDEDGNPIELEAEGFLARCIQHEIDHLNGILF 141 (141)
T ss_pred ECCCCCEEEEEEeCHhhhhHhHHhHhhCCEEC
Confidence 99999999999999999999999999999998
No 3
>PRK14595 peptide deformylase; Provisional
Probab=100.00 E-value=5.1e-52 Score=300.53 Aligned_cols=108 Identities=27% Similarity=0.473 Sum_probs=102.6
Q ss_pred ChhhhhcCCCeEEeccccCccceEEEEEeCCCCCCCceeEEEcceeeeeCCceecCeeccceeCCCceeeccCCeeEEEE
Q 033765 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (112)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~iNP~I~~~s~~~~~~~EgClS~p~~~~~V~R~~~I~v~~ 80 (112)
|++|||+++|+||||||||+++|+||++... .++.+||||+|++.|++....+|||||+||+++.|+||.+|+|+|
T Consensus 35 M~~tm~~~~gvGLAApQVG~~~ri~vi~~~~----~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~v~~ 110 (162)
T PRK14595 35 LEDTMYAQEAAALCAPQIGQSLQVAIIDMEM----EGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVTRSKMIVVES 110 (162)
T ss_pred HHHHHhhCCCcEEechhcCCceeEEEEEccC----CCceEEECCeeecCCCCEeeCCcCCccCCCcceEecCCCEEEEEE
Confidence 7899999999999999999999999999852 236899999999999998888999999999999999999999999
Q ss_pred EcCCCCEEEEEEeccceehhhhhhhhcCcccC
Q 033765 81 RDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112 (112)
Q Consensus 81 ~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~lf 112 (112)
+|++|++++++++||+|||+|||+|||+|+||
T Consensus 111 ~D~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf 142 (162)
T PRK14595 111 YDVNGNKVELTAYDDVARMILHIIDQMNGIPF 142 (162)
T ss_pred ECCCCCEEEEEEeCHHHHHHHHHhHccCCEEE
Confidence 99999999999999999999999999999997
No 4
>PRK12846 peptide deformylase; Reviewed
Probab=100.00 E-value=6.4e-52 Score=300.72 Aligned_cols=110 Identities=37% Similarity=0.681 Sum_probs=103.4
Q ss_pred ChhhhhcCCCeEEeccccCccceEEEEEeCCCCCCCceeEEEcceeeeeCCceecCeeccceeCCCceeeccCCeeEEEE
Q 033765 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (112)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~iNP~I~~~s~~~~~~~EgClS~p~~~~~V~R~~~I~v~~ 80 (112)
|++||++++|+||||||||+++|+||++.++. ..++.+||||+|++.|++....+|||||+||+++.|+||.+|+|+|
T Consensus 36 M~~tm~~~~gvGLAApQVG~~~ri~vi~~~~~--~~~~~vliNP~I~~~s~~~~~~~EGCLS~Pg~~~~V~R~~~I~v~~ 113 (165)
T PRK12846 36 MFETMRAADGVGLAAPQIGVSLRVVVIDLGDD--RVPPTVLINPEITELSPEEEVGWEGCLSVPGLRGEVERPARVRVRA 113 (165)
T ss_pred HHHHHHhCCCcEEeccccCCceeEEEEEccCC--CCcceEEECCEEEcCCCCEeccCCCCCccCCcceeecCcceEEEEE
Confidence 78999999999999999999999999997543 2346899999999999888888999999999999999999999999
Q ss_pred EcCCCCEEEEEEeccceehhhhhhhhcCcccC
Q 033765 81 RDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112 (112)
Q Consensus 81 ~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~lf 112 (112)
+|++|++++.+++||+|||+|||+|||+|+||
T Consensus 114 ~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf 145 (165)
T PRK12846 114 QDRDGKPIEIEAEGFLARVLQHEIDHLDGILY 145 (165)
T ss_pred ECCCCCEEEEEEeCHHHhHHhHHhHhcCCEee
Confidence 99999999999999999999999999999998
No 5
>TIGR00079 pept_deformyl peptide deformylase. Peptide deformylase (EC 3.5.1.88), also called polypeptide deformylase, is a metalloenzyme that uses water to release formate from the N-terminal formyl-L-methionine of bacterial and chloroplast peptides. This enzyme should not be confused with formylmethionine deformylase (EC 3.5.1.31) which is active on free N-formyl methionine and has been reported from rat intestine.
Probab=100.00 E-value=1.7e-51 Score=297.53 Aligned_cols=111 Identities=42% Similarity=0.698 Sum_probs=103.4
Q ss_pred ChhhhhcCCCeEEeccccCccceEEEEEeCCCCCCCceeEEEcceeeeeCCceecCeeccceeCCCceeeccCCeeEEEE
Q 033765 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (112)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~iNP~I~~~s~~~~~~~EgClS~p~~~~~V~R~~~I~v~~ 80 (112)
|++||++++|+||||||||+++|+||++.+++. ...+.+||||+|+..|++....+|||||+||+++.|.||.+|+|+|
T Consensus 33 M~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~-~~~~~v~iNP~I~~~s~~~~~~~EGCLS~Pg~~~~V~R~~~I~v~y 111 (161)
T TIGR00079 33 MIETMYAEEGIGLAAPQVGIWKRMFVIHLEDDD-KEDPLVLINPKIIETSGEKSGLEEGCLSVPGVYGYVPRPEKVKIRG 111 (161)
T ss_pred HHHHHHhCCCeEEehhhcCcceeEEEEEccCCc-CccceEEECCeeccCCCcEeccCcCCCccCCccceecChhheEEEE
Confidence 899999999999999999999999999985432 1236899999999999887778899999999999999999999999
Q ss_pred EcCCCCEEEEEEeccceehhhhhhhhcCcccC
Q 033765 81 RDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112 (112)
Q Consensus 81 ~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~lf 112 (112)
+|++|++++.+++||+|||+|||+|||+|+||
T Consensus 112 ~d~~G~~~~~~~~G~~Ar~iQHEiDHL~G~l~ 143 (161)
T TIGR00079 112 FDRFGKPFTIEASGLLARCIQHEMDHLNGVLF 143 (161)
T ss_pred ECCCCCEEEEEEeCHHHhHHhHHhHhcCCEee
Confidence 99999999999999999999999999999997
No 6
>PRK14597 peptide deformylase; Provisional
Probab=100.00 E-value=1.5e-51 Score=299.10 Aligned_cols=107 Identities=42% Similarity=0.703 Sum_probs=101.8
Q ss_pred ChhhhhcCCCeEEeccccCccceEEEEEeCCCCCCCceeEEEcceeeeeCCceecCeeccceeCCCceeeccCCeeEEEE
Q 033765 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (112)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~iNP~I~~~s~~~~~~~EgClS~p~~~~~V~R~~~I~v~~ 80 (112)
|++||++++|+||||||||+++|+||++.. .++.+||||+|+..|++....+|||||+||+++.|+||.+|+|+|
T Consensus 32 M~~tm~~~~GvGLAApQIGv~~ri~vi~~~-----~~~~v~INP~I~~~s~~~~~~~EGCLS~Pg~~~~V~R~~~I~v~~ 106 (166)
T PRK14597 32 MIETMYHYDGVGLAAPQVGISLRFFVMDDG-----SGPKVVINPEIIEKSEEKEIAEEGCLSFPEIFEDVERSKWVKVRY 106 (166)
T ss_pred HHHHHHhCCCcEEehhhcCCceeEEEEEcC-----CCceEEECCeeccCCCCcccCCCCCCccCCCceEecCCCEEEEEE
Confidence 789999999999999999999999999963 136799999999999988778999999999999999999999999
Q ss_pred EcCCCCEEEEEEeccceehhhhhhhhcCcccC
Q 033765 81 RDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112 (112)
Q Consensus 81 ~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~lf 112 (112)
+|++|++++.+++||+|||+|||+|||+|+||
T Consensus 107 ~d~~G~~~~~~~~G~~Ar~iQHEiDHL~G~lf 138 (166)
T PRK14597 107 QDERGEVVEELLEGYAARIFQHEYDHLNGVLF 138 (166)
T ss_pred ECCCCCEEEEEEeCHHHHHHHHHhHhhCCEee
Confidence 99999999999999999999999999999997
No 7
>PRK00150 def peptide deformylase; Reviewed
Probab=100.00 E-value=3.8e-51 Score=296.60 Aligned_cols=110 Identities=43% Similarity=0.784 Sum_probs=101.6
Q ss_pred ChhhhhcCCCeEEeccccCccceEEEEEeCCCCCCCceeEEEcceeeeeCCcee-cCeeccceeCCCceeeccCCeeEEE
Q 033765 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMI-PYEEGCLSFPGIHADVERPESVKID 79 (112)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~iNP~I~~~s~~~~-~~~EgClS~p~~~~~V~R~~~I~v~ 79 (112)
|++||++++|+||||||||+++|+||++.++.. ..+.+||||+|+..|++.. ..+|||||+||+++.|+||.+|+|+
T Consensus 35 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~--~~~~v~iNP~I~~~s~~~~~~~~EGCLS~pg~~~~V~R~~~I~v~ 112 (165)
T PRK00150 35 MFETMYAAPGVGLAAPQVGVSKRIIVIDVEDKE--GEPLVLINPEIISESSEEYLTYEEGCLSVPGVYGEVPRPERVTVK 112 (165)
T ss_pred HHHHHHhCCCcEEEhhhcCcceeEEEEEccCCC--CceeEEECCEEecCCCCeeccCCCCCCccCCeeeEecCcceeEEE
Confidence 789999999999999999999999999974321 2468999999998886655 5899999999999999999999999
Q ss_pred EEcCCCCEEEEEEeccceehhhhhhhhcCcccC
Q 033765 80 ARDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112 (112)
Q Consensus 80 ~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~lf 112 (112)
|+|++|++++.+++||+|||+|||+|||+|+||
T Consensus 113 ~~d~~G~~~~~~~~g~~Ar~~QHE~DHL~G~l~ 145 (165)
T PRK00150 113 ALDRDGKPFELEADGLLARCIQHEIDHLNGVLF 145 (165)
T ss_pred EECCCCCEEEEEEeCHhhhHHhHHhHhhCCEEe
Confidence 999999999999999999999999999999997
No 8
>PRK14598 peptide deformylase; Provisional
Probab=100.00 E-value=4.6e-51 Score=301.28 Aligned_cols=111 Identities=39% Similarity=0.664 Sum_probs=101.5
Q ss_pred ChhhhhcCCCeEEeccccCccceEEEEEeCCCCC--CCceeEEEcceeeeeCCceecCeeccceeCCCceeeccCCeeEE
Q 033765 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERG--EGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKI 78 (112)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~--~~~~~v~iNP~I~~~s~~~~~~~EgClS~p~~~~~V~R~~~I~v 78 (112)
|++||++++|+||||||||+++|+||++.+.... ...+.+||||+|+..|+. ...+|||||+||+++.|.||.+|+|
T Consensus 34 M~~tm~~~~GvGLAApQVG~~~Ri~vid~~~~~~~~~~~~~v~INP~I~~~s~~-~~~~EGCLSvPg~~~~V~R~~~I~v 112 (187)
T PRK14598 34 MFESMYNASGIGLAAPQVGRSLRLLVVDVSCMKEYEDEKPMVVINPHILAVKGY-NAMEEGCLSVPGVQGDVVRPSSITL 112 (187)
T ss_pred HHHHHHhCCCeEEehhhcCCceeEEEEEcccccccccccceEEECCeeccCCCc-ccCCCCCccCCCcceEEeccCEEEE
Confidence 8999999999999999999999999999753321 123679999999998875 5589999999999999999999999
Q ss_pred EEEcCCCCEEEEEEeccceehhhhhhhhcCcccC
Q 033765 79 DARDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112 (112)
Q Consensus 79 ~~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~lf 112 (112)
+|+|++|++++.+++||+|||+|||+|||+|+||
T Consensus 113 ~~~d~~G~~~~~~~~G~~Ar~iQHEiDHL~G~Lf 146 (187)
T PRK14598 113 KYRDEHFEERTEEFSGMMARVLQHEIDHLDGTLF 146 (187)
T ss_pred EEECCCCCEEEEEEecHhhhHHhHhhhccCCEEE
Confidence 9999999999999999999999999999999997
No 9
>PF01327 Pep_deformylase: Polypeptide deformylase; InterPro: IPR023635 Peptide deformylase (PDF) is an essential metalloenzyme required for the removal of the formyl group at the N terminus of nascent polypeptide chains in eubacteria: 3.5.1.88 from EC []. The enzyme acts as a monomer and binds a single zinc ion, catalysing the reaction:: N-formyl-L-methionine + H2O = formate + methionyl peptide Catalytic efficiency strongly depends on the identity of the bound metal []. The structure of these enzymes is known [, ]. PDF, a member of the zinc metalloproteases family, comprises an active core domain of 147 residues and a C-terminal tail of 21 residue. The 3D fold of the catalytic core has been determined by X-ray crystallography and NMR. Overall, the structure contains a series of anti-parallel beta- strands that surround two perpendicular alpha-helices. The C-terminal helix contains the characteristic HEXXH motif of metalloenzymes, which is crucial for activity. The helical arrangement, and the way the histidine residues bind the zinc ion, is reminiscent of other metalloproteases, such as thermolysin or metzincins. However, the arrangement of secondary and tertiary structures of PDF, and the positioning of its third zinc ligand (a cysteine residue), are quite different. These discrepancies, together with notable biochemical differences, suggest that PDF constitutes a new class of zinc-metalloproteases. [].; PDB: 2OS1_A 2OS0_A 1LME_B 3QU1_A 1N5N_B 1S17_B 1LRY_A 1IX1_A 1WS1_A 1WS0_A ....
Probab=100.00 E-value=2.4e-51 Score=294.89 Aligned_cols=112 Identities=38% Similarity=0.724 Sum_probs=100.5
Q ss_pred ChhhhhcCCCeEEeccccCccceEEEEEeCCCCCCCce--eEEEcceeeeeCCceecCeeccceeCCCceeeccCCeeEE
Q 033765 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE--IVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKI 78 (112)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~--~v~iNP~I~~~s~~~~~~~EgClS~p~~~~~V~R~~~I~v 78 (112)
|++||++++|+||||||||+++|+||++.+........ .+||||+|+..|+++...||||||+||+++.|+||.+|+|
T Consensus 34 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~~~v~INP~I~~~s~~~~~~~EgClS~p~~~~~V~R~~~I~v 113 (156)
T PF01327_consen 34 MFETMYAANGVGLAAPQIGIPKRIFVIDIPDEKPEPSEPETVLINPKITSSSEETVEDWEGCLSVPGIRGKVERPKKITV 113 (156)
T ss_dssp HHHHHHHTTBSEEEGGGGTS-BSEEEEEEETTSSSESEEEEEEEEEEEEESSEEEEEEEEEETTSTTEEEEEEEESEEEE
T ss_pred HHHHHHHhccceEehhhcCchheEEEEecCcccccCCccceEEECCEEecccCCcCccccCCCccCCccccCCCcceEEE
Confidence 78999999999999999999999999998755432221 5999999999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEEeccceehhhhhhhhcCcccC
Q 033765 79 DARDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112 (112)
Q Consensus 79 ~~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~lf 112 (112)
+|+|++|++++.+++||+|||+|||+|||+|+||
T Consensus 114 ~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~ 147 (156)
T PF01327_consen 114 RYYDLDGKPIELEAEGFLARCIQHEIDHLNGILF 147 (156)
T ss_dssp EEEETTS-EEEEEEEHHHHHHHHHHHHHHTT--G
T ss_pred EEECCCCeEEEEEEccccEEeeeehhhhhCCEeh
Confidence 9999999999999999999999999999999997
No 10
>PRK14596 peptide deformylase; Provisional
Probab=100.00 E-value=6.4e-50 Score=297.62 Aligned_cols=111 Identities=36% Similarity=0.674 Sum_probs=98.5
Q ss_pred ChhhhhcCCCeEEeccccCccceEEEEEe-CCCCC-C-----------CceeEEEcceeeeeCCceecCeeccceeCCCc
Q 033765 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNP-VGERG-E-----------GEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIH 67 (112)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~-~~~~~-~-----------~~~~v~iNP~I~~~s~~~~~~~EgClS~p~~~ 67 (112)
|++||++++|+||||||||+++|+||++. .+... . ..+.+||||+|+..|++ ...+|||||+||++
T Consensus 34 M~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~~~~~~~~~~~~~~~~~~~~~vlINP~I~~~s~~-~~~~EGCLSvPg~~ 112 (199)
T PRK14596 34 MLETMFEARGVGLAAPQIGLSVRLFVAVEYADDEEEEEGEEAPLRSRVLREYVMVNPVITYRKGD-QSGQEGCLSIPGLY 112 (199)
T ss_pred HHHHHHhCCCcEEehhhcCCceeEEEEEeccCccccccccccccccccccceEEECCEEecCCCc-ccCCcCcccccCcc
Confidence 89999999999999999999999999973 21110 0 02579999999997776 46899999999998
Q ss_pred e-eeccCCeeEEEEEcCCCCEEEEEEeccceehhhhhhhhcCcccC
Q 033765 68 A-DVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112 (112)
Q Consensus 68 ~-~V~R~~~I~v~~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~lf 112 (112)
+ .|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||
T Consensus 113 ~~~V~R~~~I~v~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLf 158 (199)
T PRK14596 113 EEGVPRARQVRVEYQDLDGQKRTLEAEGYLARVFQHEIDHLDGILF 158 (199)
T ss_pred ceeeeccCEEEEEEECCCCCEEEEEEeChhhhhhhhhhhhcCCEee
Confidence 5 89999999999999999999999999999999999999999998
No 11
>PRK09218 peptide deformylase; Validated
Probab=100.00 E-value=8.3e-50 Score=281.95 Aligned_cols=105 Identities=25% Similarity=0.460 Sum_probs=97.6
Q ss_pred ChhhhhcC--CCeEEeccccCccceEEEEEeCCCCCCCceeEEEcceeeeeCCceecCeeccceeCCCceeeccCCeeEE
Q 033765 1 MFDVMYKT--DGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKI 78 (112)
Q Consensus 1 m~~tm~~~--~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~iNP~I~~~s~~~~~~~EgClS~p~~~~~V~R~~~I~v 78 (112)
|++||+++ +|+||||||||+++|+||++... .+.+||||+|++.|++. ..+|||||+||++ .|+||.+|+|
T Consensus 30 M~~tm~~~~~~gvGLAApQIGv~~ri~vi~~~~-----~~~vlINP~I~~~s~~~-~~~EGCLS~P~~~-~V~R~~~I~v 102 (136)
T PRK09218 30 LQDTLLANRDECVGMAANMIGVQKRIIIFSLGF-----VPVVMFNPVIVSKSGPY-ETEEGCLSLTGER-PTKRYEEITV 102 (136)
T ss_pred HHHHHHhcCCCCEEEEHHHCCcCceEEEEECCC-----CcEEEECCEEecCCCce-eCCccceecCCCc-cccCcceeEE
Confidence 89999998 58999999999999999999731 36799999999988775 5789999999997 7999999999
Q ss_pred EEEcCCCCEEEEEEeccceehhhhhhhhcCcccC
Q 033765 79 DARDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112 (112)
Q Consensus 79 ~~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~lf 112 (112)
+|+|++|++++.+++||+|||+|||+|||+|+|+
T Consensus 103 ~~~d~~G~~~~~~~~g~~Ar~iQHEiDHL~G~L~ 136 (136)
T PRK09218 103 KYLDRNWREQTQTFTGFTAQIIQHELDHCEGILI 136 (136)
T ss_pred EEECCCCCEEEEEEeChhhhhhhhHhhccCCEEC
Confidence 9999999999999999999999999999999986
No 12
>KOG3137 consensus Peptide deformylase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.4e-42 Score=255.59 Aligned_cols=112 Identities=63% Similarity=1.058 Sum_probs=105.0
Q ss_pred ChhhhhcCCCeEEeccccCccceEEEEEeCCC-------C-------CCCceeEEEcceeeeeCCceecCeeccceeCCC
Q 033765 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE-------R-------GEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGI 66 (112)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~-------~-------~~~~~~v~iNP~I~~~s~~~~~~~EgClS~p~~ 66 (112)
|++.|+..+|+||||||||+|.|++|++.+++ + ...+..||+||++.++|.+.+.+.|||||+||+
T Consensus 113 m~~VMr~~~gVGLsAPQvGvp~q~~vle~~~alcrecP~~~ra~rqmepf~l~V~VNP~lk~~s~klv~F~EGClSv~Gf 192 (267)
T KOG3137|consen 113 MFDVMRKTDGVGLSAPQVGVPVQLMVLEPAGALCRECPEPGRAERQMEPFKLIVLVNPKLKKYSDKLVPFDEGCLSVPGF 192 (267)
T ss_pred HHHHHHhCCCccccCcccCCceEEEEecChHHHHhcCCChhhhHhhccCCCeEEEecchHhhhcccccccccccccccch
Confidence 79999999999999999999999999998641 1 124568999999999999999999999999999
Q ss_pred ceeeccCCeeEEEEEcCCCCEEEEEEeccceehhhhhhhhcCcccC
Q 033765 67 HADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112 (112)
Q Consensus 67 ~~~V~R~~~I~v~~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~lf 112 (112)
++.|.||..|+|.++|.+|+++++.++||.||+||||+|||+|.||
T Consensus 193 ~A~V~R~q~V~i~g~D~~Ger~~~~aSgw~ARI~QHE~DHL~G~Lf 238 (267)
T KOG3137|consen 193 YAEVVRPQSVKIDGRDITGERFSISASGWPARIFQHEYDHLEGVLF 238 (267)
T ss_pred hhcccccceEEEeeecCCCCEEEEecccchHHHHHhHhhhhcceee
Confidence 9999999999999999999999999999999999999999999998
No 13
>COG4740 Predicted metalloprotease [General function prediction only]
Probab=98.36 E-value=1.5e-07 Score=67.52 Aligned_cols=71 Identities=21% Similarity=0.355 Sum_probs=56.4
Q ss_pred ceeEEEcceeeeeCCceecCeeccceeCCCceeeccCCeeEEEEE-------cCCCC--------EEEEEEeccceehhh
Q 033765 37 EEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDAR-------DINGA--------RFSVSLSDLPARVFQ 101 (112)
Q Consensus 37 ~~~v~iNP~I~~~s~~~~~~~EgClS~p~~~~~V~R~~~I~v~~~-------d~~g~--------~~~~~~~g~~Ar~~Q 101 (112)
..+.|+||+|++..+. +...|.|-|-.- +..|+||++++|+.. |+--. +.++.++|..|.-+.
T Consensus 74 ~~YLflNPeIi~~EGt-~~RlEKCG~r~e-Relv~RPyR~~vr~d~~l~a~vdPg~~~IRvreL~k~~lrl~G~pAy~~a 151 (176)
T COG4740 74 DLYLFLNPEIIRAEGT-LTRLEKCGRRRE-RELVKRPYRLEVRHDGGLIARVDPGRRRIRVRELDKGTLRLEGIPAYNLA 151 (176)
T ss_pred heeeeeChhheeccce-EEehhhhcchHH-HHHhcCCeEEEEecCceEEEEECCccceEEEEecCCCeEEEecCccchhH
Confidence 3589999999997665 778999988654 467999999999874 33222 344689999999999
Q ss_pred hhhhhcCc
Q 033765 102 HEFDHLQV 109 (112)
Q Consensus 102 HEiDHL~G 109 (112)
||+.||.|
T Consensus 152 HEleHLeg 159 (176)
T COG4740 152 HELEHLEG 159 (176)
T ss_pred HHHHHhhc
Confidence 99999998
No 14
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=67.15 E-value=12 Score=23.49 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=26.0
Q ss_pred cCCeeEEEEEcCCCCEEEEEEeccceehhhhh
Q 033765 72 RPESVKIDARDINGARFSVSLSDLPARVFQHE 103 (112)
Q Consensus 72 R~~~I~v~~~d~~g~~~~~~~~g~~Ar~~QHE 103 (112)
+....+|++.|.+|++.++.++.-..++++.|
T Consensus 52 ~~g~yev~~~~~dG~~~ev~vD~~tG~V~~~k 83 (83)
T PF13670_consen 52 DDGCYEVEARDKDGKKVEVYVDPATGEVVKEK 83 (83)
T ss_pred CCCEEEEEEEECCCCEEEEEEcCCCCeEeecC
Confidence 33357888999999999999998888777654
No 15
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=57.68 E-value=7.8 Score=23.84 Aligned_cols=29 Identities=14% Similarity=0.220 Sum_probs=23.9
Q ss_pred CeeEEEEEcCCCCEEEEEEeccceehhhh
Q 033765 74 ESVKIDARDINGARFSVSLSDLPARVFQH 102 (112)
Q Consensus 74 ~~I~v~~~d~~g~~~~~~~~g~~Ar~~QH 102 (112)
..++++|.|.+|..+.+.-+.-+..++++
T Consensus 39 ~~~~l~Y~Dedgd~v~l~sd~Dl~~a~~~ 67 (81)
T smart00666 39 QSFTLKYQDEDGDLVSLTSDEDLEEAIEE 67 (81)
T ss_pred CCeEEEEECCCCCEEEecCHHHHHHHHHH
Confidence 57899999999999998877776666664
No 16
>PF11730 DUF3297: Protein of unknown function (DUF3297); InterPro: IPR021724 This family is expressed in Proteobacteria and Actinobacteria. The function is not known.
Probab=53.88 E-value=18 Score=22.81 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=26.6
Q ss_pred CCceecCeeccceeCCCceeeccCCeeEEEEEcCCCCEEEEEEecc
Q 033765 50 SNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDL 95 (112)
Q Consensus 50 s~~~~~~~EgClS~p~~~~~V~R~~~I~v~~~d~~g~~~~~~~~g~ 95 (112)
..+.....|-|.|---++..+. ++.|+.|++..++++|-
T Consensus 28 g~Er~nVeEYciSEGWvrv~~g-------ka~DR~G~Pl~iklkG~ 66 (71)
T PF11730_consen 28 GKERTNVEEYCISEGWVRVAAG-------KALDRRGNPLTIKLKGT 66 (71)
T ss_pred CeEcccceeEeccCCEEEeecC-------cccccCCCeeEEEEcce
Confidence 3445566788998643322221 45799999999999984
No 17
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=48.87 E-value=6.7 Score=27.16 Aligned_cols=19 Identities=42% Similarity=0.531 Sum_probs=14.3
Q ss_pred hhhhhcCCCeEEeccccCc
Q 033765 2 FDVMYKTDGIGLSAPQVGI 20 (112)
Q Consensus 2 ~~tm~~~~gvGLAApQIG~ 20 (112)
.+-..+.-++-|+.||||+
T Consensus 69 v~yWektF~IDl~~PqIGV 87 (120)
T cd03074 69 VPYWEKTFGIDLFRPQIGV 87 (120)
T ss_pred hHHHHhhcCcccCCCceee
Confidence 3444566789999999995
No 18
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=46.99 E-value=20 Score=23.32 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=21.0
Q ss_pred cCCeeEEEEEcCCCCEEEEEEecccee
Q 033765 72 RPESVKIDARDINGARFSVSLSDLPAR 98 (112)
Q Consensus 72 R~~~I~v~~~d~~g~~~~~~~~g~~Ar 98 (112)
....+.|+|.|.+|..++++-+--++-
T Consensus 40 ~~~~flIKYkD~dGDlVTIts~~dL~~ 66 (81)
T cd06401 40 SSDDVLIKYKDEDGDLITIFDSSDLSF 66 (81)
T ss_pred CcccEEEEEECCCCCEEEeccHHHHHH
Confidence 346899999999999999976554433
No 19
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=44.60 E-value=25 Score=22.95 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=25.9
Q ss_pred cCeeccceeCCCce------eeccCCeeEEEEEcCCCCEEEEEE
Q 033765 55 PYEEGCLSFPGIHA------DVERPESVKIDARDINGARFSVSL 92 (112)
Q Consensus 55 ~~~EgClS~p~~~~------~V~R~~~I~v~~~d~~g~~~~~~~ 92 (112)
...+.++|+..+.. ...+...++++|.|++|.+.++.-
T Consensus 14 t~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp~tiSS 57 (83)
T cd06404 14 TSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCTISS 57 (83)
T ss_pred EEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCceeecC
Confidence 33445566555422 335667899999999999998753
No 20
>PF04986 Y2_Tnp: Putative transposase; InterPro: IPR007069 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases IS1294 and IS801 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=41.61 E-value=29 Score=25.22 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=28.4
Q ss_pred eccceeCCCceeeccCCeeEEEEEcCC-CCEEEE--EEeccceehhhhhh
Q 033765 58 EGCLSFPGIHADVERPESVKIDARDIN-GARFSV--SLSDLPARVFQHEF 104 (112)
Q Consensus 58 EgClS~p~~~~~V~R~~~I~v~~~d~~-g~~~~~--~~~g~~Ar~~QHEi 104 (112)
-+++|-.-+.. +. ...|+.+|.|.. ++...+ ....|.+|.+||=.
T Consensus 116 R~~is~~Ri~~-~~-~~~V~f~y~d~~~~~~~~~~l~~~efi~r~l~Hvp 163 (183)
T PF04986_consen 116 RPAISNSRIVS-YD-DGTVTFRYKDHRTKKTKTLTLSAEEFIRRLLQHVP 163 (183)
T ss_pred hccccccceEE-ec-cceeEEEEEcCCCCcEEEEEechHHHHHHHHhhcC
Confidence 34555544432 22 667889999865 444444 55669999999944
No 21
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=40.82 E-value=24 Score=23.04 Aligned_cols=31 Identities=10% Similarity=0.071 Sum_probs=25.0
Q ss_pred cCCeeEEEEEcCCCCEEEEEEeccceehhhh
Q 033765 72 RPESVKIDARDINGARFSVSLSDLPARVFQH 102 (112)
Q Consensus 72 R~~~I~v~~~d~~g~~~~~~~~g~~Ar~~QH 102 (112)
+...+.++|.|.+|..+.++-+.-+.-|+|.
T Consensus 42 ~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~ 72 (91)
T cd06398 42 PDADLSLTYTDEDGDVVTLVDDNDLTDAIQY 72 (91)
T ss_pred CCCcEEEEEECCCCCEEEEccHHHHHHHHHH
Confidence 3467899999999999999887776666664
No 22
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=39.09 E-value=27 Score=22.60 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=18.2
Q ss_pred eeEEEEEcCCCCEEEEEEecc
Q 033765 75 SVKIDARDINGARFSVSLSDL 95 (112)
Q Consensus 75 ~I~v~~~d~~g~~~~~~~~g~ 95 (112)
.++++|.|.+|+++.++-+.-
T Consensus 39 ~f~lKYlDde~e~v~lssd~e 59 (81)
T cd06396 39 DIQIKYVDEENEEVSVNSQGE 59 (81)
T ss_pred cceeEEEcCCCCEEEEEchhh
Confidence 799999999999999876543
No 23
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=38.29 E-value=48 Score=21.64 Aligned_cols=24 Identities=13% Similarity=0.109 Sum_probs=19.4
Q ss_pred CeeEEEEEcCCCCEEEEEEeccce
Q 033765 74 ESVKIDARDINGARFSVSLSDLPA 97 (112)
Q Consensus 74 ~~I~v~~~d~~g~~~~~~~~g~~A 97 (112)
..+++.|.|.+|.++++.-+.-+.
T Consensus 46 ~~ftlky~DeeGDlvtIssdeEL~ 69 (87)
T cd06402 46 KNFQLFWKDEEGDLVAFSSDEELV 69 (87)
T ss_pred CcEEEEEECCCCCEEeecCHHHHH
Confidence 578999999999999987554433
No 24
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=38.00 E-value=29 Score=22.22 Aligned_cols=26 Identities=4% Similarity=-0.054 Sum_probs=21.1
Q ss_pred CeeEEEEEcCCCCEEEEEEeccceeh
Q 033765 74 ESVKIDARDINGARFSVSLSDLPARV 99 (112)
Q Consensus 74 ~~I~v~~~d~~g~~~~~~~~g~~Ar~ 99 (112)
..+.++|.|.+|++..++-+.-+.-|
T Consensus 39 ~~f~LkY~Ddegd~v~ltsd~DL~ea 64 (82)
T cd06407 39 SAFDLKYLDDDEEWVLLTCDADLEEC 64 (82)
T ss_pred CeeEEEEECCCCCeEEeecHHHHHHH
Confidence 57999999999999999876654443
No 25
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=36.63 E-value=11 Score=28.36 Aligned_cols=11 Identities=36% Similarity=0.610 Sum_probs=9.1
Q ss_pred ehhhhhhhhcC
Q 033765 98 RVFQHEFDHLQ 108 (112)
Q Consensus 98 r~~QHEiDHL~ 108 (112)
-+.+||+|||+
T Consensus 78 em~d~E~~HL~ 88 (204)
T COG2941 78 EMADEEIDHLA 88 (204)
T ss_pred HHHHHHHHHHH
Confidence 46889999985
No 26
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=34.58 E-value=30 Score=21.00 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=22.9
Q ss_pred CeeEEEEEcCCCCEEEEEEeccceehhhh
Q 033765 74 ESVKIDARDINGARFSVSLSDLPARVFQH 102 (112)
Q Consensus 74 ~~I~v~~~d~~g~~~~~~~~g~~Ar~~QH 102 (112)
..+.++|.|.+|..+.+.-+.-+..++++
T Consensus 39 ~~~~l~y~D~e~d~v~l~sd~Dl~~a~~~ 67 (81)
T cd05992 39 VSFKLKYPDEDGDLVTISSDEDLEEAIEE 67 (81)
T ss_pred CcEEEEeeCCCCCEEEeCCHHHHHHHHHH
Confidence 67899999999999998876655555554
No 27
>PF06486 DUF1093: Protein of unknown function (DUF1093); InterPro: IPR006542 These are a family of small (about 115 amino acids) uncharacterised proteins with N-terminal signal sequences, found exclusively in Gram-positive organisms. Most genomes that have any members of this family have at least two members.; PDB: 3NPP_B 2K5Q_A 2K5W_A.
Probab=34.34 E-value=56 Score=20.17 Aligned_cols=20 Identities=10% Similarity=0.242 Sum_probs=15.0
Q ss_pred eEEEEEcCCCCEEEEEEecc
Q 033765 76 VKIDARDINGARFSVSLSDL 95 (112)
Q Consensus 76 I~v~~~d~~g~~~~~~~~g~ 95 (112)
=++.++|.+|+.+++++...
T Consensus 30 Y~l~~yd~~G~~k~l~f~~~ 49 (78)
T PF06486_consen 30 YTLKGYDEDGKEKTLTFTAS 49 (78)
T ss_dssp EEEEEEETT--EEEEEEEES
T ss_pred EEEEEECCCCCEEEEEEEec
Confidence 47889999999999988764
No 28
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=34.31 E-value=46 Score=21.67 Aligned_cols=31 Identities=6% Similarity=-0.068 Sum_probs=25.8
Q ss_pred cCCeeEEEEEcCCCCEEEEEEeccceehhhh
Q 033765 72 RPESVKIDARDINGARFSVSLSDLPARVFQH 102 (112)
Q Consensus 72 R~~~I~v~~~d~~g~~~~~~~~g~~Ar~~QH 102 (112)
+.....+.|.|-+|+.+.++.+.-+.-|+.+
T Consensus 40 ~~~~~~L~YlDDEgD~VllT~D~DL~e~v~i 70 (86)
T cd06409 40 ETHLYALSYVDDEGDIVLITSDSDLVAAVLV 70 (86)
T ss_pred cCCcccEEEEcCCCCEEEEeccchHHHHHHH
Confidence 3567899999999999999998877766654
No 29
>COG2916 Hns DNA-binding protein H-NS [General function prediction only]
Probab=32.03 E-value=16 Score=25.64 Aligned_cols=34 Identities=15% Similarity=0.070 Sum_probs=30.0
Q ss_pred CCeeEEEEEcCCCCEEEEEEeccceehhhhhhhh
Q 033765 73 PESVKIDARDINGARFSVSLSDLPARVFQHEFDH 106 (112)
Q Consensus 73 ~~~I~v~~~d~~g~~~~~~~~g~~Ar~~QHEiDH 106 (112)
++.+.+.|+|.+|+..+++..|=.-+.+|-.+|-
T Consensus 85 ~rpa~~~~~~~n~eg~TWTGrGR~P~wI~kAl~~ 118 (128)
T COG2916 85 ARPAKYKYYDENGEGKTWTGRGRTPAWIGKALDE 118 (128)
T ss_pred CCCCCCCeecCCCCCCcccCCCCCcHHHHHHHHc
Confidence 4556889999999999999999999999988876
No 30
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=31.41 E-value=94 Score=17.23 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=18.1
Q ss_pred eeEE-EEEcCCCCEEEEEEeccce
Q 033765 75 SVKI-DARDINGARFSVSLSDLPA 97 (112)
Q Consensus 75 ~I~v-~~~d~~g~~~~~~~~g~~A 97 (112)
.+.| .|.|.+|+.+...-.||..
T Consensus 3 ~~~v~g~~~~~Gkrk~~~k~GF~T 26 (46)
T PF14657_consen 3 YYRVYGYDDETGKRKQKTKRGFKT 26 (46)
T ss_pred EEEEEEEECCCCCEEEEEcCCCCc
Confidence 3566 4788899999999999753
No 31
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=30.19 E-value=96 Score=21.98 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=20.9
Q ss_pred eeeccCCeeEEEEEcCCCCEEEEEEe
Q 033765 68 ADVERPESVKIDARDINGARFSVSLS 93 (112)
Q Consensus 68 ~~V~R~~~I~v~~~d~~g~~~~~~~~ 93 (112)
+...-+.+|+|++.|.+|..+++++.
T Consensus 28 ~~~~~~g~v~I~~~~~dG~~~~v~~~ 53 (143)
T PTZ00490 28 ALYSTPGKVKVCVKKRDGTHCDVEVP 53 (143)
T ss_pred eeccCCCcEEEEEEcCCCCEEEEEEC
Confidence 34556788999999999998888764
No 32
>KOG2449 consensus Methylmalonate semialdehyde dehydrogenase [Amino acid transport and metabolism; Carbohydrate transport and metabolism]
Probab=29.22 E-value=50 Score=23.89 Aligned_cols=36 Identities=25% Similarity=0.242 Sum_probs=29.6
Q ss_pred CCeeEEEEEcCCCCEEEE-EEeccceehhhhhhhhcC
Q 033765 73 PESVKIDARDINGARFSV-SLSDLPARVFQHEFDHLQ 108 (112)
Q Consensus 73 ~~~I~v~~~d~~g~~~~~-~~~g~~Ar~~QHEiDHL~ 108 (112)
...|.|..-+..|+..-+ +-+|-.||=++||+|-++
T Consensus 99 dd~I~Iin~nPygn~t~i~Tsn~atark~~~e~~a~q 135 (157)
T KOG2449|consen 99 DDAIFIINNNPYGNGTAIFTSNGATARKFCHEPDAGQ 135 (157)
T ss_pred CceeEEEecCCCCceeEEEecCcHHhhhhhcCCCccc
Confidence 456888888888888664 889999999999998654
No 33
>TIGR01655 yxeA_fam conserved hypothetical protein TIGR01655. This model represents a family of small (about 115 amino acids) uncharacterized proteins with N-terminal signal sequences, found exclusively in Gram-positive organisms. Most genomes that have any members of this family have at least two members.
Probab=29.08 E-value=87 Score=21.08 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=18.0
Q ss_pred CeeEEEEEcCCCCEEEEEEec
Q 033765 74 ESVKIDARDINGARFSVSLSD 94 (112)
Q Consensus 74 ~~I~v~~~d~~g~~~~~~~~g 94 (112)
..=++.++|.+|+.++++++.
T Consensus 55 y~Y~~~~yd~~G~~k~i~f~~ 75 (114)
T TIGR01655 55 YEYKLDAYDSSGKKHKVKFMA 75 (114)
T ss_pred EEEEEEEECCCCCEEEEEEEc
Confidence 556899999999999999854
No 34
>smart00204 TGFB Transforming growth factor-beta (TGF-beta) family. Family members are active as disulphide-linked homo- or heterodimers. TGFB is a multifunctional peptide that controls proliferation, differentiation, and other functions in many cell types.
Probab=28.89 E-value=93 Score=20.41 Aligned_cols=35 Identities=9% Similarity=0.039 Sum_probs=26.6
Q ss_pred eCCCceeeccCCeeEEEEEcCCCCEEEEEEeccce
Q 033765 63 FPGIHADVERPESVKIDARDINGARFSVSLSDLPA 97 (112)
Q Consensus 63 ~p~~~~~V~R~~~I~v~~~d~~g~~~~~~~~g~~A 97 (112)
.|..-..-.+...+.+.|+|.+|+-+..++.++.+
T Consensus 62 ~~~pCC~P~~~~~l~~ly~~~~~~i~~~~~~~Mvv 96 (102)
T smart00204 62 VPKPCCVPTKLSPLSMLYYDDDGNVVLRNYPNMVV 96 (102)
T ss_pred CCCCCccCceEecEEEEEEeCCCcEEEEEcCCCEE
Confidence 34443455688889999999999888888877765
No 35
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=28.40 E-value=28 Score=21.28 Aligned_cols=28 Identities=14% Similarity=0.241 Sum_probs=20.8
Q ss_pred CCeeEEEEEcCCCCEEEEEEeccceehh
Q 033765 73 PESVKIDARDINGARFSVSLSDLPARVF 100 (112)
Q Consensus 73 ~~~I~v~~~d~~g~~~~~~~~g~~Ar~~ 100 (112)
...+.+.|.|.+|..+.+.-+.-+..++
T Consensus 39 ~~~~~l~Y~D~dgD~V~i~sd~Dl~~a~ 66 (84)
T PF00564_consen 39 DEDFQLKYKDEDGDLVTISSDEDLQEAI 66 (84)
T ss_dssp TSSEEEEEEETTSSEEEESSHHHHHHHH
T ss_pred CccEEEEeeCCCCCEEEeCCHHHHHHHH
Confidence 4789999999999998886554443333
No 36
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=25.60 E-value=2e+02 Score=18.88 Aligned_cols=55 Identities=13% Similarity=0.103 Sum_probs=35.5
Q ss_pred eeEEEcceeeeeCCceecCeeccceeC---C--CceeeccCCeeEEEEEcCCCCEEEEEE
Q 033765 38 EIVLVNPRVNKYSNKMIPYEEGCLSFP---G--IHADVERPESVKIDARDINGARFSVSL 92 (112)
Q Consensus 38 ~~v~iNP~I~~~s~~~~~~~EgClS~p---~--~~~~V~R~~~I~v~~~d~~g~~~~~~~ 92 (112)
+.-+|+=-.+...++.+...+.-.|+. - +.-.-.....+++++.|-+|+..+-+.
T Consensus 39 Pa~~I~~v~v~~ng~~v~~~~~~~siS~NP~l~F~~~~~~~g~l~v~~~Dn~G~~~~~~~ 98 (100)
T PF08770_consen 39 PAHFIEEVEVTYNGKPVFRADWGPSISENPYLRFSFKGKKSGTLTVTWTDNKGNSFSAEA 98 (100)
T ss_dssp --B-EEEEEEEETTEEEEEEEE-TTB-SS-EEEEEEEESSSEEEEEEEEETTS-EEEEEE
T ss_pred ChHheEEEEEEECCEEEEEEEeCCcccCCCcEEEEEecCCCcEEEEEEEECCCCEEEEEE
Confidence 556777777777788776666655553 2 334445677999999999999987665
No 37
>PF15507 DUF4649: Domain of unknown function (DUF4649)
Probab=24.50 E-value=81 Score=20.03 Aligned_cols=24 Identities=13% Similarity=0.116 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCEEEEEEeccceeh
Q 033765 76 VKIDARDINGARFSVSLSDLPARV 99 (112)
Q Consensus 76 I~v~~~d~~g~~~~~~~~g~~Ar~ 99 (112)
|+++|+|..-.+++++++++..-+
T Consensus 1 IeitYldayk~Er~~~fe~~~ef~ 24 (72)
T PF15507_consen 1 IEITYLDAYKQERTQTFEDYNEFM 24 (72)
T ss_pred CEEEEeccceeEEEEEeCCHHHHH
Confidence 689999998888999999875543
No 38
>KOG1349 consensus Gpi-anchor transamidase [Posttranslational modification, protein turnover, chaperones]
Probab=23.39 E-value=62 Score=25.75 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=35.3
Q ss_pred CeeccceeCCCceeeccCCeeEEEEEcCCCCEEEEEEeccceehhhhhh
Q 033765 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEF 104 (112)
Q Consensus 56 ~~EgClS~p~~~~~V~R~~~I~v~~~d~~g~~~~~~~~g~~Ar~~QHEi 104 (112)
-.|-|.|-||.+...-+...-.|...|-.|... ++.--.....++|+-
T Consensus 260 ~~~~~~St~gvr~dl~~r~~~~v~itDFFg~vr-~~~~~~~~~~~~~~~ 307 (309)
T KOG1349|consen 260 PKRLLGSTPGVRTDLYQRDPKDVLITDFFGSVR-IELHTSEEIKLDDEF 307 (309)
T ss_pred ChhhhcCCcCcccccccCCcccceeeeecccce-eEeccchhhcccCcc
Confidence 468899999999888888888888899888877 444444444444443
No 39
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=22.91 E-value=1.6e+02 Score=21.43 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=15.8
Q ss_pred CeeEEEEEcCCCCEEEEEE
Q 033765 74 ESVKIDARDINGARFSVSL 92 (112)
Q Consensus 74 ~~I~v~~~d~~g~~~~~~~ 92 (112)
..|+|.|.|.+|+++.++.
T Consensus 42 e~i~Itfv~~dG~~~~i~g 60 (159)
T KOG3309|consen 42 EDIKITFVDPDGEEIKIKG 60 (159)
T ss_pred ceEEEEEECCCCCEEEeee
Confidence 3499999999999988753
No 40
>PF13582 Reprolysin_3: Metallo-peptidase family M12B Reprolysin-like; PDB: 3P24_C.
Probab=22.48 E-value=37 Score=22.17 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=12.6
Q ss_pred cceehhhhhhhhcCcc
Q 033765 95 LPARVFQHEFDHLQVF 110 (112)
Q Consensus 95 ~~Ar~~QHEiDHL~G~ 110 (112)
....++.||+=|..|-
T Consensus 106 ~~~~~~~HEiGH~lGl 121 (124)
T PF13582_consen 106 SGVDTFAHEIGHNLGL 121 (124)
T ss_dssp TSTTHHHHHHHHHTT-
T ss_pred ccceEeeehhhHhcCC
Confidence 3459999999999884
No 41
>PF11296 DUF3097: Protein of unknown function (DUF3097); InterPro: IPR021447 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=21.27 E-value=1.1e+02 Score=24.02 Aligned_cols=44 Identities=23% Similarity=0.379 Sum_probs=31.5
Q ss_pred ceeEEEcceeeeeCCceecCeeccceeCCCceeeccCCeeEEEEE
Q 033765 37 EEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDAR 81 (112)
Q Consensus 37 ~~~v~iNP~I~~~s~~~~~~~EgClS~p~~~~~V~R~~~I~v~~~ 81 (112)
.+..+.-|.-...... ...--|+.-++|.++.|.|+.+|.|+..
T Consensus 73 ~pV~L~~P~~~~~~~~-~rtaSGS~av~~~rArvAr~SRIwVEG~ 116 (275)
T PF11296_consen 73 KPVTLVRPRRAAPAAP-RRTASGSVAVEGARARVARASRIWVEGR 116 (275)
T ss_pred eeEEEeCCCCCCCCCC-cCcCCCceecCCCcccccccceeEEecc
Confidence 4556666633332232 3356788889999999999999999986
No 42
>PF06004 DUF903: Bacterial protein of unknown function (DUF903); InterPro: IPR010305 This family consists of several small bacterial proteins several of which are classified as putative lipoproteins. The function of this family is unknown.; PDB: 2RB6_B 3BDU_F 2RA2_F 2RD1_C 3FIF_H 2JN0_A 2K57_A.
Probab=21.02 E-value=1.3e+02 Score=17.63 Aligned_cols=17 Identities=12% Similarity=0.173 Sum_probs=12.6
Q ss_pred EEEEEcCCCCEEEEEEe
Q 033765 77 KIDARDINGARFSVSLS 93 (112)
Q Consensus 77 ~v~~~d~~g~~~~~~~~ 93 (112)
.++|.|.+|+++.+.-+
T Consensus 26 ~~~y~D~~G~~~qIn~d 42 (50)
T PF06004_consen 26 MYSYTDADGKEQQINKD 42 (50)
T ss_dssp EEEEEBTTS-EEEEEGG
T ss_pred cEEEECCCCCEEEEchH
Confidence 57899999999887543
No 43
>PF04580 Pox_D3: Chordopoxvirinae D3 protein ; InterPro: IPR007660 This is a family of Chordopoxvirinae D3 protein. The conserved region occupies the entire length of D3 protein.
Probab=20.59 E-value=99 Score=24.11 Aligned_cols=33 Identities=21% Similarity=0.105 Sum_probs=22.4
Q ss_pred CccceEEEEEeCCCCCCCceeEEEcceeeeeCC
Q 033765 19 GINVQLMVFNPVGERGEGEEIVLVNPRVNKYSN 51 (112)
Q Consensus 19 G~~~ri~vi~~~~~~~~~~~~v~iNP~I~~~s~ 51 (112)
+.-+|+..++.++...+....++.||.+.....
T Consensus 117 ~~wkril~i~Cp~~~~~~~E~fltNPfl~~~~~ 149 (246)
T PF04580_consen 117 NCWKRILFIQCPPIIYESYEIFLTNPFLIKQNR 149 (246)
T ss_pred CceeEEEEEECCCCCCcccceeeeCchhhcccH
Confidence 345677777777655444467999999866443
No 44
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=20.48 E-value=85 Score=27.94 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=16.5
Q ss_pred eEEEEEeCCCCCCCceeEEEccee
Q 033765 23 QLMVFNPVGERGEGEEIVLVNPRV 46 (112)
Q Consensus 23 ri~vi~~~~~~~~~~~~v~iNP~I 46 (112)
|=||+.+.......+.+||+||+=
T Consensus 353 rpFvikPtsSplmkPLLVFVNPKS 376 (1004)
T KOG0782|consen 353 RPFVIKPTSSPLMKPLLVFVNPKS 376 (1004)
T ss_pred CceEEccCCCCCCCceEEEecCCC
Confidence 457777765544456789999963
No 45
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=20.46 E-value=42 Score=23.61 Aligned_cols=32 Identities=13% Similarity=0.152 Sum_probs=25.4
Q ss_pred CeeEEEEEcCCCCEEEEEEeccceehhhhhhh
Q 033765 74 ESVKIDARDINGARFSVSLSDLPARVFQHEFD 105 (112)
Q Consensus 74 ~~I~v~~~d~~g~~~~~~~~g~~Ar~~QHEiD 105 (112)
...+.+|.|.+|+..+++..|=.-..++..+|
T Consensus 93 ~p~KYr~~d~~G~~kTWTGrGR~P~wi~~al~ 124 (134)
T PRK10328 93 RPAKYRFTDVNGETKTWTGQGRTPKPIAQALA 124 (134)
T ss_pred CCCccCCCCCCCCcCcccCCCCCcHHHHHHHH
Confidence 33455555899999999999988888887775
No 46
>PF08363 GbpC: Glucan-binding protein C; InterPro: IPR013574 This domain is found in glucan-binding protein C (GbpC) and in the V-region of surface protein antigen; both these proteins belong to the Spa family of Streptococcal proteins []. This domain consists of a beta-supersandwich of 18 beta-strands in two sheets. There are at least four types of glucan-binding proteins (Gbp) in Streptococcus mutans, GbpA, GbpB, GbpC and GbpD. These proteins promote the adhesion of Streptococcal bacteria to teeth and are associated with dental caries []. GbpC is a cell-wall anchoring protein that plays an important role in sucrose-dependent adhesion by binding to soluble glucan synthesised by glucosyltransferase D (GTFD) []. Spa antigens I/II are multi-functional proteins expressed at the cell wall surface of oral Streptococci, where they function as adhesins. Antigens I/II recognise a wide range of ligands. They exert an immunomodulatory effect on human cells and are important in inflammatory disorders, such as dental caries. These proteins can be divided into seven regions: signal peptide, N-terminal, A-region (alanine-rich), V-region (variable domain), P-region (proline-rich), C-terminal domain, and a cell wall anchor motif. The V-region is the central domain and exhibits the greatest variability in sequence, and is responsible for binding monocyte receptors, its binding stimulating the release of TNF-alpha from the monocytes. The crystal structure of the V-region revealed a lectin-like fold that displays a putative preformed carbohydrate-binding site stabilised by a metal ion [].; GO: 0005488 binding, 0009405 pathogenesis, 0044406 adhesion to host, 0009274 peptidoglycan-based cell wall; PDB: 1JMM_A 3IPK_A 3IOX_A 2WD6_B.
Probab=20.42 E-value=84 Score=24.76 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=14.2
Q ss_pred CeeEEEEEcCCCCEEEEEEe
Q 033765 74 ESVKIDARDINGARFSVSLS 93 (112)
Q Consensus 74 ~~I~v~~~d~~g~~~~~~~~ 93 (112)
-.++++|+|++|+++.++-.
T Consensus 158 v~v~~~FYDedG~~i~~~~~ 177 (283)
T PF08363_consen 158 VNVDVKFYDEDGKEIDFTKN 177 (283)
T ss_dssp EEEEEEEEETTS-BE-EEE-
T ss_pred EEeEEEEECCCCCEEcccCc
Confidence 46789999999999887654
Done!