Query 033765
Match_columns 112
No_of_seqs 121 out of 1092
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 09:48:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033765.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033765hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3uwb_A RIIA-RIIB membrane-asso 100.0 1.4E-54 4.9E-59 310.7 7.9 112 1-112 34-145 (154)
2 3dld_A Peptide deformylase; ba 100.0 1.1E-53 3.7E-58 310.5 8.2 112 1-112 35-151 (171)
3 3u04_A Peptide deformylase 1; 100.0 1.6E-53 5.6E-58 313.9 9.2 112 1-112 37-165 (190)
4 3pn3_A Peptide deformylase 1B, 100.0 3E-53 1E-57 313.0 9.0 112 1-112 32-143 (193)
5 1xeo_A Peptide deformylase; co 100.0 3.3E-53 1.1E-57 307.2 8.9 109 1-112 34-142 (168)
6 1y6h_A Peptide deformylase; op 100.0 2.5E-53 8.7E-58 310.0 8.1 112 1-112 37-153 (177)
7 4dr9_A Peptide deformylase; hy 100.0 1.9E-53 6.5E-58 313.9 7.3 112 1-112 50-161 (192)
8 1ws0_A Peptide deformylase 1; 100.0 2.4E-53 8.4E-58 304.8 7.6 108 1-112 35-142 (156)
9 1n5n_A Peptide deformylase; me 100.0 5.7E-53 2E-57 308.8 9.1 110 1-112 47-156 (180)
10 1rl4_A Formylmethionine deform 100.0 5.4E-53 1.8E-57 310.7 8.1 112 1-112 40-152 (188)
11 2ew5_A Peptide deformylase; in 100.0 6.7E-53 2.3E-57 308.7 8.5 111 1-112 34-147 (181)
12 1lme_A PDF, peptide deformylas 100.0 1.1E-52 3.8E-57 306.3 8.9 107 1-112 45-151 (176)
13 3g5k_A Peptide deformylase, mi 100.0 7E-53 2.4E-57 308.9 7.2 112 1-112 39-164 (183)
14 3qu1_A Peptide deformylase 2; 100.0 1.1E-52 3.7E-57 305.2 8.0 109 1-112 37-146 (171)
15 2w3t_A Peptide deformylase; pr 100.0 1.9E-52 6.5E-57 307.7 9.2 109 1-112 34-142 (188)
16 1v3y_A Peptide deformylase; pr 100.0 2.9E-52 9.9E-57 307.7 9.0 111 1-112 33-155 (192)
17 1zxz_A PDF, peptide deformylas 100.0 2.2E-52 7.5E-57 309.4 7.7 112 1-112 38-163 (197)
18 3e3u_A Peptide deformylase; me 100.0 5.6E-52 1.9E-56 307.2 9.8 112 1-112 40-158 (197)
19 2okl_A Peptide deformylase 2; 100.0 1.6E-51 5.5E-56 302.2 8.8 112 1-112 38-164 (185)
20 2os0_A Peptide deformylase; PD 100.0 4.8E-51 1.6E-55 300.3 8.9 112 1-112 37-167 (188)
21 1lm4_A Peptide deformylase PDF 100.0 8E-51 2.7E-55 300.4 9.5 112 1-112 48-175 (194)
22 3svj_P Peptide deformylase 3; 100.0 1.8E-50 6E-55 300.4 8.1 112 1-112 49-183 (203)
23 3l87_A Peptide deformylase; hy 100.0 1.5E-49 5.1E-54 301.0 8.4 112 1-112 83-218 (238)
24 2kvz_A ISPE; structural genomi 52.2 12 0.0004 23.5 2.8 25 71-95 4-30 (85)
25 2bkf_A Zinc-finger protein NBR 43.3 23 0.00077 22.4 3.1 35 59-93 26-63 (87)
26 3npp_A PFAM DUF1093 family pro 36.0 38 0.0013 20.8 3.3 21 74-94 28-48 (87)
27 2k5q_A Hypothetical membrane a 35.3 37 0.0013 21.8 3.3 19 76-94 37-55 (105)
28 2kt7_A Putative peptidoglycan 33.5 30 0.001 22.3 2.6 22 73-94 5-28 (102)
29 1d9n_A Methyl-CPG-binding prot 30.2 28 0.00095 21.2 1.9 36 54-89 2-44 (75)
30 1vd2_A Protein kinase C, IOTA 29.9 19 0.00066 22.6 1.1 22 70-91 41-62 (89)
31 2k5w_A Hypothetical cytosolic 28.6 52 0.0018 21.7 3.2 22 74-95 33-54 (117)
32 3qii_A PHD finger protein 20; 28.3 35 0.0012 21.4 2.1 43 53-97 28-70 (85)
33 2kkc_A Sequestosome-1; P62, PB 27.7 64 0.0022 20.7 3.4 29 73-101 60-88 (102)
34 3hh2_A Growth/differentiation 25.8 1.1E+02 0.0037 19.4 4.3 35 63-97 69-103 (109)
35 2arp_A Inhibin beta A chain; c 25.5 72 0.0024 20.5 3.4 31 68-98 81-111 (116)
36 1q1o_A Cell division control p 24.8 46 0.0016 21.3 2.3 28 74-101 56-83 (98)
37 2qcq_A Bone morphogenetic prot 24.4 1.2E+02 0.0042 19.2 4.4 34 64-97 71-104 (110)
38 3p8d_A Medulloblastoma antigen 24.0 48 0.0016 19.7 2.1 42 54-97 14-55 (67)
39 3lqb_A Hatching enzyme, LOC792 22.5 38 0.0013 24.1 1.7 27 85-111 79-108 (199)
40 2ktr_A Sequestosome-1; autopha 22.5 89 0.003 20.6 3.4 25 72-96 74-98 (117)
41 1wj6_A KIAA0049 protein, RSGI 22.4 23 0.00077 23.0 0.4 18 74-91 52-69 (101)
42 2wd6_A Agglutinin receptor; ce 21.2 34 0.0012 26.6 1.3 18 74-91 175-192 (349)
43 1zkz_A Growth/differentiation 20.8 1.5E+02 0.0052 18.7 4.3 30 68-97 74-104 (110)
44 2k57_A Putative lipoprotein; s 20.4 88 0.003 18.3 2.7 38 48-94 9-46 (61)
45 2z1c_A Hydrogenase expression/ 20.1 39 0.0013 20.5 1.2 28 60-91 2-29 (75)
46 2rb6_A Uncharacterized protein 20.1 91 0.0031 18.2 2.8 38 48-94 9-46 (61)
No 1
>3uwb_A RIIA-RIIB membrane-associated protein; actinonin, probable peptide deformylase hydrolase-antibiotic complex; HET: BB2; 1.70A {Synechococcus phage s-ssm7} PDB: 3uwa_A*
Probab=100.00 E-value=1.4e-54 Score=310.65 Aligned_cols=112 Identities=38% Similarity=0.666 Sum_probs=105.0
Q ss_pred ChhhhhcCCCeEEeccccCccceEEEEEeCCCCCCCceeEEEcceeeeeCCceecCeeccceeCCCceeeccCCeeEEEE
Q 033765 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (112)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~iNP~I~~~s~~~~~~~EgClS~p~~~~~V~R~~~I~v~~ 80 (112)
|++|||+++|+||||||||+++|+||++..+++....+.+||||+|++.|++....+|||||+||+++.|+||.+|+|+|
T Consensus 34 M~~Tm~~~~GvGLAApQIGv~~ri~vi~~~~~~~~~~~~v~INP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~v~~ 113 (154)
T 3uwb_A 34 MCEAMWASDGIGLAAPQVGINKRVIVVDETTEEHGKYAHLMVNPKITWKSEEKVLFDEGCLSVPDQNGEVLRPKSIKVTF 113 (154)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEEECCBTTTBSCEEEEEEEEEEEECSCEEEEEEEETTEEEEEEEEEEESCEEEEE
T ss_pred HHHHHHHCCCcEEEccccCccEEEEEEEccccccCcccEEEECCEEEECCCcEEecccCccCcCCcceeccCcceeEEEE
Confidence 89999999999999999999999999998643222368899999999999998878999999999999999999999999
Q ss_pred EcCCCCEEEEEEeccceehhhhhhhhcCcccC
Q 033765 81 RDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112 (112)
Q Consensus 81 ~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~lf 112 (112)
+|++|++++++++||+|||+|||+|||+|+||
T Consensus 114 ~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLf 145 (154)
T 3uwb_A 114 QNKDGKYKKWKLDGLAARVVQHEIDHLEGILF 145 (154)
T ss_dssp ECTTSCEEEEEECHHHHHHHHHHHHHHTTCCG
T ss_pred ECCCCCEEEEEEEChhhhhhhhHHHhhCCEee
Confidence 99999999999999999999999999999998
No 2
>3dld_A Peptide deformylase; bacterial blight, XOO1075, xanthomonas oryzae PV. oryzae KACC10331, hydrolase; 2.60A {Xanthomonas oryzae PV} SCOP: d.167.1.0
Probab=100.00 E-value=1.1e-53 Score=310.52 Aligned_cols=112 Identities=33% Similarity=0.515 Sum_probs=104.3
Q ss_pred ChhhhhcCCCeEEeccccCccceEEEEEeCCCCC-----CCceeEEEcceeeeeCCceecCeeccceeCCCceeeccCCe
Q 033765 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERG-----EGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPES 75 (112)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~-----~~~~~v~iNP~I~~~s~~~~~~~EgClS~p~~~~~V~R~~~ 75 (112)
|++|||+++|+||||||||+++|+||++.+++.. ...+.+||||+|+..|+++...+|||||+||+++.|+||.+
T Consensus 35 M~eTm~~~~GvGLAApQIGv~~ri~vid~~~~~~~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~ 114 (171)
T 3dld_A 35 MFETMGAAHGVGLAAPQIAVDLQLMVFGFEASERYPEAPAVPLTALANAQIEPLSDEMENGWEGCLSIPGLRAVIPRYRY 114 (171)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCSSEEEEEESSCSSSCSCCCEEEEEEEEEEEEESSSCEEEEEEEETTEEEEEEEEEEESE
T ss_pred HHHHHHHcCCEEEEccccCCceeEEEEEcccccccccccccCCEEEECCEEEEcCCceeecCCCccccCCceEeeeCChh
Confidence 8999999999999999999999999999864311 12478999999999999988899999999999999999999
Q ss_pred eEEEEEcCCCCEEEEEEeccceehhhhhhhhcCcccC
Q 033765 76 VKIDARDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112 (112)
Q Consensus 76 I~v~~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~lf 112 (112)
|+|+|+|++|++++++++||+|||+|||+|||+|+||
T Consensus 115 I~v~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLf 151 (171)
T 3dld_A 115 IRYRGFAPDGSPIEREAEGFHARVVQHEYDHLVGRLY 151 (171)
T ss_dssp EEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCG
T ss_pred cEEEEECCCCCEEEEEEeChhhhhhhhHhHhcCCEee
Confidence 9999999999999999999999999999999999998
No 3
>3u04_A Peptide deformylase 1; ssgcid, actinonin, ehrlichia chaffeensi structural genomics; HET: BB2; 1.70A {Ehrlichia chaffeensis} SCOP: d.167.1.0 PDB: 3oca_A
Probab=100.00 E-value=1.6e-53 Score=313.90 Aligned_cols=112 Identities=34% Similarity=0.592 Sum_probs=104.3
Q ss_pred ChhhhhcCCCeEEeccccCccceEEEEEeCCCCC-----------------CCceeEEEcceeeeeCCceecCeecccee
Q 033765 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERG-----------------EGEEIVLVNPRVNKYSNKMIPYEEGCLSF 63 (112)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~-----------------~~~~~v~iNP~I~~~s~~~~~~~EgClS~ 63 (112)
|++|||+++|+||||||||+++|+||++.++... ...+.+||||+|+..|+++...+|||||+
T Consensus 37 M~eTM~~~~GvGLAApQIGv~~Ri~vid~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSv 116 (190)
T 3u04_A 37 MFETMHANQGLGLAAVQVGVHKRILVMNVPEEFEDSEDIENVEDKIEGYELYGGPYCIINPKIVDISQEKVKLKEGCLSV 116 (190)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEEEECCC-------------CTTCBSSEEEEEEEEEEEEEECSCEEEEEECCTTS
T ss_pred HHHHHHHcCCeEEehhhcCCceeEEEEEcCccccccccccccccccccccccCCCEEEECCEEEecCCCEeeccCCCCCc
Confidence 8999999999999999999999999999864311 22578999999999999988899999999
Q ss_pred CCCceeeccCCeeEEEEEcCCCCEEEEEEeccceehhhhhhhhcCcccC
Q 033765 64 PGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112 (112)
Q Consensus 64 p~~~~~V~R~~~I~v~~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~lf 112 (112)
||+++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||
T Consensus 117 Pg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLf 165 (190)
T 3u04_A 117 PGYFDYIVRPQRIAVQYLDYNGNECIIKAQGWLARCLQHEIDHLNGTVF 165 (190)
T ss_dssp TTCCEEEEEESCEEEEEECTTSCEEEEEECHHHHHHHHHHHHHHTTCCG
T ss_pred CCcceeeccchheEEEEECCCCCEEEEEEEChhhhhhhhHHHhcCCEee
Confidence 9999999999999999999999999999999999999999999999998
No 4
>3pn3_A Peptide deformylase 1B, chloroplastic; PDF, N-terminal excision pathway, N induced-FIT, hydrolase-hydrolase inhibitor complex; HET: PN3; 1.30A {Arabidopsis thaliana} PDB: 3m6p_A* 3o3j_A* 3pn2_A 3m6o_A* 3pn4_A* 3pn5_A 3m6q_A 3pn6_A 3m6r_A 3cpm_A
Probab=100.00 E-value=3e-53 Score=312.96 Aligned_cols=112 Identities=76% Similarity=1.292 Sum_probs=105.7
Q ss_pred ChhhhhcCCCeEEeccccCccceEEEEEeCCCCCCCceeEEEcceeeeeCCceecCeeccceeCCCceeeccCCeeEEEE
Q 033765 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (112)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~iNP~I~~~s~~~~~~~EgClS~p~~~~~V~R~~~I~v~~ 80 (112)
|++|||+++|+||||||||+++|+||++.++...+..+.+||||+|+..|+++...+|||||+||+++.|+||.+|+|+|
T Consensus 32 M~eTM~~a~GvGLAApQIGv~~Ri~Vid~~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~~ 111 (193)
T 3pn3_A 32 MFDVMYKTDGIGLSAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDA 111 (193)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEECTTCSTTSSCCEEEEEEEEEEECSCEEEEEECCTTSTTCCEEEEEESCEEEEE
T ss_pred HHHHHHHCCCeEEEccccCcceEEEEEECCCCcCCcccEEEECCEEEecCCcEEEeecccccCCCCCCcCcCCCEEEEEE
Confidence 89999999999999999999999999998654334457899999999999998889999999999999999999999999
Q ss_pred EcCCCCEEEEEEeccceehhhhhhhhcCcccC
Q 033765 81 RDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112 (112)
Q Consensus 81 ~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~lf 112 (112)
+|++|++++++++||+|||+|||+|||+|+||
T Consensus 112 ~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLf 143 (193)
T 3pn3_A 112 RDITGERFSISLSRLPARIFQHEYDHLEGVLF 143 (193)
T ss_dssp ECTTSCEEEEEECHHHHHHHHHHHHHHTTCCG
T ss_pred EcCCCCEEEEEEEChhhhhhhHHHHHhCCEee
Confidence 99999999999999999999999999999998
No 5
>1xeo_A Peptide deformylase; cobalt deformylase, formate, hydrolase; 1.30A {Escherichia coli} SCOP: d.167.1.1 PDB: 1bs5_A 1bs6_A 1bs7_A 1bs8_A 1bsj_A* 1bsk_A* 1bsz_A* 1g27_A* 1bs4_A* 1icj_A* 1lru_A* 1xem_A 1xen_A 1g2a_A 2ai8_A* 4al3_A 4al2_A 3k6l_A* 1dff_A 1def_A ...
Probab=100.00 E-value=3.3e-53 Score=307.24 Aligned_cols=109 Identities=42% Similarity=0.635 Sum_probs=102.7
Q ss_pred ChhhhhcCCCeEEeccccCccceEEEEEeCCCCCCCceeEEEcceeeeeCCceecCeeccceeCCCceeeccCCeeEEEE
Q 033765 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (112)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~iNP~I~~~s~~~~~~~EgClS~p~~~~~V~R~~~I~v~~ 80 (112)
|++|||+++|+||||||||+++|+||++..++. ..+.+||||+|+..|++.. .+|||||+||+++.|+||.+|+|+|
T Consensus 34 M~~Tm~~~~GvGLAApQIGv~~ri~vid~~~~~--~~~~vlINP~I~~~s~~~~-~~EGCLSvPg~~~~V~R~~~I~v~~ 110 (168)
T 1xeo_A 34 MFETMYAEEGIGLAATQVDIHQRIIVIDVSENR--DERLVLINPELLEKSGETG-IEEGCLSIPEQRALVPRAEKVKIRA 110 (168)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEECCCTTS--CCCEEEEEEEEEEEECCBC-CEECCTTSTTCCEECCBCSEEEEEE
T ss_pred HHHHHHHCCCEEEEhHhCCcceEEEEEEccCCc--CccEEEECCEEeccCCCEE-EecCccCcCCEEEEeEcccEEEEEE
Confidence 799999999999999999999999999986432 2468999999999998876 8999999999999999999999999
Q ss_pred EcCCCCEEEEEEeccceehhhhhhhhcCcccC
Q 033765 81 RDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112 (112)
Q Consensus 81 ~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~lf 112 (112)
+|++|++++++++||+|||+|||+|||+|+||
T Consensus 111 ~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLf 142 (168)
T 1xeo_A 111 LDRDGKPFELEADGLLAICIQHEMDHLVGKLF 142 (168)
T ss_dssp ECTTSCEEEEEECHHHHHHHHHHHHHHTTCCG
T ss_pred ECCCCCEEEEEEeCCeEEeeeehhHHhCCEEE
Confidence 99999999999999999999999999999998
No 6
>1y6h_A Peptide deformylase; open and close conformation, PDF, hydrolase; 2.20A {Leptospira interrogans} SCOP: d.167.1.1 PDB: 1sv2_A* 1vey_A* 1vev_A 1vez_A 1szz_A*
Probab=100.00 E-value=2.5e-53 Score=309.98 Aligned_cols=112 Identities=36% Similarity=0.655 Sum_probs=103.7
Q ss_pred ChhhhhcCCCeEEeccccCccceEEEEEeCCCCC-----CCceeEEEcceeeeeCCceecCeeccceeCCCceeeccCCe
Q 033765 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERG-----EGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPES 75 (112)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~-----~~~~~v~iNP~I~~~s~~~~~~~EgClS~p~~~~~V~R~~~ 75 (112)
|++|||+++|+||||||||+++|+||++..+... ...+.+||||+|+..|+++...+|||||+||+++.|+||.+
T Consensus 37 M~~Tm~~~~GvGLAApQIGv~~ri~vid~~~~~~~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~ 116 (177)
T 1y6h_A 37 MFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPERIILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQ 116 (177)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEECCSSCTTSTTSCCCCCEEEEEEEEEECCSCEEEEEEEETTEEEEEEEEEEESE
T ss_pred HHHHHHHCCCeEEEehhcCCceeEEEEEccCccccccccccCcEEEECCEEEEcCCCEEecccCCcccCCeeeeeeccce
Confidence 8999999999999999999999999999854211 12368999999999999987789999999999999999999
Q ss_pred eEEEEEcCCCCEEEEEEeccceehhhhhhhhcCcccC
Q 033765 76 VKIDARDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112 (112)
Q Consensus 76 I~v~~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~lf 112 (112)
|+|+|+|++|++++++++||+|||+|||+|||+|+||
T Consensus 117 I~v~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLf 153 (177)
T 1y6h_A 117 IRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILY 153 (177)
T ss_dssp EEEEEECTTCCEEEEEEEHHHHHHHHHHHHHHTTCCG
T ss_pred EEEEEECCCCCEEEEEEeCceeEehhhhHHHhCCEee
Confidence 9999999999999999999999999999999999998
No 7
>4dr9_A Peptide deformylase; hydrolase-hydrolase inhibitor complex; HET: BB2; 1.90A {Synechococcus elongatus}
Probab=100.00 E-value=1.9e-53 Score=313.94 Aligned_cols=112 Identities=44% Similarity=0.736 Sum_probs=103.5
Q ss_pred ChhhhhcCCCeEEeccccCccceEEEEEeCCCCCCCceeEEEcceeeeeCCceecCeeccceeCCCceeeccCCeeEEEE
Q 033765 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (112)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~iNP~I~~~s~~~~~~~EgClS~p~~~~~V~R~~~I~v~~ 80 (112)
|++|||+++|+||||||||+++|+||++..++.....+.+||||+|+..|+++...+|||||+||+++.|+||.+|+|+|
T Consensus 50 M~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~~ 129 (192)
T 4dr9_A 50 MLQTMYSADGIGLAAPQVGINKQLIVIDLELEDEQAPPLVLINPKIERTAGDLEQCQEGCLSIPGVYLDVERPEIVEVSY 129 (192)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCSSEEEECCCC-----CCEEEEEEEEEEEEEEEEEEEECCTTSTTCCEEEEEEEEEEEEE
T ss_pred HHHHHHHcCCeEEechhcCCceeEEEEEcCccccCcccEEEECCEEEECCCCEeeccCCCCCcCCeeeEecccceEEEEE
Confidence 89999999999999999999999999998653333457899999999999988889999999999999999999999999
Q ss_pred EcCCCCEEEEEEeccceehhhhhhhhcCcccC
Q 033765 81 RDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112 (112)
Q Consensus 81 ~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~lf 112 (112)
+|++|++++++++||+|||+|||+|||+|+||
T Consensus 130 ~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLf 161 (192)
T 4dr9_A 130 KDENGRPQRLVADGLLARCIQHEMDHLNGVLF 161 (192)
T ss_dssp ECTTSCEEEEEECHHHHHHHHHHHHHHTTCCG
T ss_pred ECCCCCEEEEEEEChhhhhhhhHhHhhCCEee
Confidence 99999999999999999999999999999998
No 8
>1ws0_A Peptide deformylase 1; alpha + beta topology, hydrolase; 1.70A {Bacillus cereus} PDB: 1ws1_A*
Probab=100.00 E-value=2.4e-53 Score=304.80 Aligned_cols=108 Identities=37% Similarity=0.656 Sum_probs=101.7
Q ss_pred ChhhhhcCCCeEEeccccCccceEEEEEeCCCCCCCceeEEEcceeeeeCCceecCeeccceeCCCceeeccCCeeEEEE
Q 033765 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (112)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~iNP~I~~~s~~~~~~~EgClS~p~~~~~V~R~~~I~v~~ 80 (112)
|++|||+++|+||||||||+++|+||++..+.. .+.+||||+|+..|++. ..+|||||+||+++.|+||.+|+|+|
T Consensus 35 M~~Tm~~~~GvGLAApQIGv~~ri~vid~~~~~---~~~vlINP~I~~~s~~~-~~~EGCLSvPg~~~~V~R~~~I~v~~ 110 (156)
T 1ws0_A 35 MHETMLIADGVGLAAPQVGVSLQVAVVDVDDDT---GKIELINPSILEKRGEQ-VGPEGCLSFPGLYGEVERADYIKVRA 110 (156)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEEECCTTT---CEEEEEEEEEEEEEEEE-EEEECCTTSTTCCEEEEEEEEEEEEE
T ss_pred HHHHHHHCCCEEEEhHHcCcceeEEEEEccCCc---CcEEEECCEEEccCCCE-EeccCCcccCCeeeEeecccEEEEEE
Confidence 799999999999999999999999999986432 24899999999999886 67999999999999999999999999
Q ss_pred EcCCCCEEEEEEeccceehhhhhhhhcCcccC
Q 033765 81 RDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112 (112)
Q Consensus 81 ~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~lf 112 (112)
+|++|++++++++||+|||+|||+|||+|+||
T Consensus 111 ~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLf 142 (156)
T 1ws0_A 111 QNRRGKVFLLEAEGFLARAIQHEIDHLHGVLF 142 (156)
T ss_dssp ECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCG
T ss_pred ECCCCCEEEEEEeCceEEEeEehhHhhCCEee
Confidence 99999999999999999999999999999998
No 9
>1n5n_A Peptide deformylase; metalloenzyme, drug design, deformylation, hydrolase; 1.80A {Pseudomonas aeruginosa} SCOP: d.167.1.1 PDB: 1s17_A* 1ix1_A* 1lry_A*
Probab=100.00 E-value=5.7e-53 Score=308.76 Aligned_cols=110 Identities=38% Similarity=0.683 Sum_probs=104.0
Q ss_pred ChhhhhcCCCeEEeccccCccceEEEEEeCCCCCCCceeEEEcceeeeeCCceecCeeccceeCCCceeeccCCeeEEEE
Q 033765 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (112)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~iNP~I~~~s~~~~~~~EgClS~p~~~~~V~R~~~I~v~~ 80 (112)
|++|||+++|+||||||||+++|+||++..++. ..+.+||||+|+..|++....+|||||+||+++.|+||.+|+|+|
T Consensus 47 M~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~~--~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~~ 124 (180)
T 1n5n_A 47 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDK--SEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKA 124 (180)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEEECSTTS--CCEEEEEEEEEEESCSCEEEEEECCTTSTTCCEEEEEESCEEEEE
T ss_pred HHHHHHHCCCeEEEhhhcCcceEEEEEEccCCC--CccEEEECCEEecCCCCEEecccCCcCcCCcceEEeccCEEEEEE
Confidence 799999999999999999999999999986432 257899999999999997778999999999999999999999999
Q ss_pred EcCCCCEEEEEEeccceehhhhhhhhcCcccC
Q 033765 81 RDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112 (112)
Q Consensus 81 ~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~lf 112 (112)
+|++|++++++++||+|||+|||+|||+|+||
T Consensus 125 ~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLf 156 (180)
T 1n5n_A 125 LDRDGNPFEEVAEGLLAVCIQHECDHLNGKLF 156 (180)
T ss_dssp ECTTSCEEEEEECHHHHHHHHHHHHHHBTCCG
T ss_pred ECCCCCEEEEEEcCCeEEeeeehhHhhCCEeE
Confidence 99999999999999999999999999999998
No 10
>1rl4_A Formylmethionine deformylase; crystal engineering, drug design, malaria, PDF, peptide DEFO plasmodium, hydrolase; HET: BRR BL5; 2.18A {Plasmodium falciparum} SCOP: d.167.1.1 PDB: 1rqc_A 1jym_A
Probab=100.00 E-value=5.4e-53 Score=310.71 Aligned_cols=112 Identities=46% Similarity=0.783 Sum_probs=99.9
Q ss_pred ChhhhhcCCCeEEeccccCccceEEEEEeCC-CCCCCceeEEEcceeeeeCCceecCeeccceeCCCceeeccCCeeEEE
Q 033765 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVG-ERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKID 79 (112)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~-~~~~~~~~v~iNP~I~~~s~~~~~~~EgClS~p~~~~~V~R~~~I~v~ 79 (112)
|++|||+++|+||||||||+++|+||++.++ ......+.+||||+|+..|++....+|||||+||+++.|+||.+|+|+
T Consensus 40 M~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~ 119 (188)
T 1rl4_A 40 MFDIMYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSIS 119 (188)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEEC-----------CEEEEEEEEEECSCEEEEEECCTTSTTCCEEEEEESCEEEE
T ss_pred HHHHHHHCCCeEEEhhhcCcceEEEEEEccccccCcccceEEECCEEEecCCcEEeccccccccCCccEEEecccEEEEE
Confidence 7999999999999999999999999999743 111224689999999999999877899999999999999999999999
Q ss_pred EEcCCCCEEEEEEeccceehhhhhhhhcCcccC
Q 033765 80 ARDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112 (112)
Q Consensus 80 ~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~lf 112 (112)
|+|++|++++++++||+|||+|||+|||+|+||
T Consensus 120 ~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLf 152 (188)
T 1rl4_A 120 YYDINGYKHLKILKGIHSRIFQHEFDHLNGTLF 152 (188)
T ss_dssp EECTTSCEEEEEECHHHHHHHHHHHHHHTTCCG
T ss_pred EECCCCCEEEEEEeCCeEEEeEehhHhhCCEEE
Confidence 999999999999999999999999999999998
No 11
>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A {Helicobacter pylori} PDB: 2ew6_A* 2ew7_A
Probab=100.00 E-value=6.7e-53 Score=308.68 Aligned_cols=111 Identities=35% Similarity=0.592 Sum_probs=102.6
Q ss_pred ChhhhhcCCCeEEeccccCccceEEEEEeCCCC--CCCce-eEEEcceeeeeCCceecCeeccceeCCCceeeccCCeeE
Q 033765 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGER--GEGEE-IVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVK 77 (112)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~--~~~~~-~v~iNP~I~~~s~~~~~~~EgClS~p~~~~~V~R~~~I~ 77 (112)
|++|||+++|+||||||||+++|+||++.++.+ ....+ .+||||+|+ .|+++...+|||||+||+++.|+||.+|+
T Consensus 34 M~eTm~~~~GvGLAApQIGv~~Ri~Vid~~~~~~~~~~~~~~vlINP~I~-~s~~~~~~~EGCLSvPg~~~~V~R~~~I~ 112 (181)
T 2ew5_A 34 MYETMIASEGIGLAAIQVGLPLRMLIINLPQEDGVQHKEDCLEIINPKFI-ETGGSMMYKEGCLSVPGFYEEVERFEKVK 112 (181)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEECCCCTTSCCCGGGCEEEEEEEEE-EEECCEEEEECCTTSTTCCEEEEECSEEE
T ss_pred HHHHHHHCCCeEEEhhhcCcceEEEEEECCCcccccccCccEEEECCEEE-EcCCEEEcccCCcccCCCcceeccccEEE
Confidence 899999999999999999999999999986431 22245 899999999 88886778999999999999999999999
Q ss_pred EEEEcCCCCEEEEEEeccceehhhhhhhhcCcccC
Q 033765 78 IDARDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112 (112)
Q Consensus 78 v~~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~lf 112 (112)
|+|+|++|++++++++||+|||+|||+|||+|+||
T Consensus 113 V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLf 147 (181)
T 2ew5_A 113 IEYQNRFAEVKVLEASELLAVAIQHEIDHLNGVLF 147 (181)
T ss_dssp EEEECTTCCEEEEEEEHHHHHHHHHHHHHHTTCCG
T ss_pred EEEECCCCCEEEEEEeCceEEeeeehhHHhCCEeE
Confidence 99999999999999999999999999999999998
No 12
>1lme_A PDF, peptide deformylase; thermophIle, metalloenzyme, deformylation, structural genomics, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: d.167.1.1
Probab=100.00 E-value=1.1e-52 Score=306.28 Aligned_cols=107 Identities=38% Similarity=0.713 Sum_probs=102.5
Q ss_pred ChhhhhcCCCeEEeccccCccceEEEEEeCCCCCCCceeEEEcceeeeeCCceecCeeccceeCCCceeeccCCeeEEEE
Q 033765 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (112)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~iNP~I~~~s~~~~~~~EgClS~p~~~~~V~R~~~I~v~~ 80 (112)
|++|||+++|+||||||||+++|+||++..+ .+.+||||+|+..|++....+|||||+||+++.|+||.+|+|+|
T Consensus 45 M~eTM~~~~GvGLAApQIGv~~Ri~vid~~~-----~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~~ 119 (176)
T 1lme_A 45 MIETMYHYDGVGLAAPQVGISQRFFVMDVGN-----GPVAVINPEILEIDPETEVAEEGCLSFPEIFVEIERSKRIKVKY 119 (176)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEECSSS-----CCEEEEEEEEEEECSCEEEEEECCTTSTTCCEEEEEESEEEEEE
T ss_pred HHHHHHHCCCeEEEehhcCcceEEEEEEcCC-----ceEEEECCEEEccCCcEEeccCCccCcCCcceEEecCCEEEEEE
Confidence 7999999999999999999999999999853 26899999999999998778999999999999999999999999
Q ss_pred EcCCCCEEEEEEeccceehhhhhhhhcCcccC
Q 033765 81 RDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112 (112)
Q Consensus 81 ~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~lf 112 (112)
+|++|++++++++||+|||+|||+|||+|+||
T Consensus 120 ~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLf 151 (176)
T 1lme_A 120 QNTRGEYVEEELEGYAARVFQHEFDHLNGVLI 151 (176)
T ss_dssp ECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCG
T ss_pred ECCCCCEEEEEEeCCeEEEeeehhHhhCCEee
Confidence 99999999999999999999999999999998
No 13
>3g5k_A Peptide deformylase, mitochondrial; actinonin, hydrolase, iron, metal-bindi mitochondrion, protein biosynthesis, transit peptide; HET: BB2; 1.70A {Homo sapiens} PDB: 3g5p_A
Probab=100.00 E-value=7e-53 Score=308.95 Aligned_cols=112 Identities=33% Similarity=0.499 Sum_probs=103.1
Q ss_pred ChhhhhcCCCeEEeccccCccceEEEEEeCCCC--------------CCCceeEEEcceeeeeCCceecCeeccceeCCC
Q 033765 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGER--------------GEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGI 66 (112)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~--------------~~~~~~v~iNP~I~~~s~~~~~~~EgClS~p~~ 66 (112)
|++|||+++|+||||||||+++|+||++.++.. ...++.+||||+|+..|++....+|||||+||+
T Consensus 39 M~eTM~~~~GvGLAApQIGv~~Ri~vid~~~~~~~~~~~~~~~~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~ 118 (183)
T 3g5k_A 39 LVQVMRRRRCVGLSAPQLGVPRQVLALELPEALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGF 118 (183)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEEEECHHHHHTSCHHHHHHHTCCCEEEEEEEEEEEEEEEEEEEEEEECCTTSTTE
T ss_pred HHHHHHHcCCeEEeccccCCceeEEEEEcCccccccccccccccccccccCceEEECCeEEecCCCEEecccCccCcCCc
Confidence 799999999999999999999999999975321 011357999999999998888899999999999
Q ss_pred ceeeccCCeeEEEEEcCCCCEEEEEEeccceehhhhhhhhcCcccC
Q 033765 67 HADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112 (112)
Q Consensus 67 ~~~V~R~~~I~v~~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~lf 112 (112)
++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||
T Consensus 119 ~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLf 164 (183)
T 3g5k_A 119 LACVPRFQAVQISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLF 164 (183)
T ss_dssp EEEEEEEEEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCG
T ss_pred cEEeeCcceeEEEEECCCCCEEEEEEeChhheehhhHHHHhCCEeE
Confidence 9999999999999999999999999999999999999999999998
No 14
>3qu1_A Peptide deformylase 2; structural genomics, center for structural genomics of infec diseases, csgid, metal binding; 1.80A {Vibrio cholerae} SCOP: d.167.1.0
Probab=100.00 E-value=1.1e-52 Score=305.23 Aligned_cols=109 Identities=39% Similarity=0.623 Sum_probs=102.2
Q ss_pred Chhhhhc-CCCeEEeccccCccceEEEEEeCCCCCCCceeEEEcceeeeeCCceecCeeccceeCCCceeeccCCeeEEE
Q 033765 1 MFDVMYK-TDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKID 79 (112)
Q Consensus 1 m~~tm~~-~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~iNP~I~~~s~~~~~~~EgClS~p~~~~~V~R~~~I~v~ 79 (112)
|++|||+ ++|+||||||||+++|+||++.+++ +..+.+||||+|+. |++....+|||||+||+++.|+||.+|+|+
T Consensus 37 M~eTm~~~~~GvGLAApQIGv~~ri~vid~~~~--~~~~~vlINP~I~~-~~~~~~~~EGCLSvPg~~~~V~R~~~I~V~ 113 (171)
T 3qu1_A 37 LLDTLYATDNGIGLAAPQVGREEAIVVIDLSDN--RDQPLVLINPKVVS-GSNKEMGQEGCLSVPDYYADVERYTSVVVE 113 (171)
T ss_dssp HHHHHHHSSSCCEEEGGGGTCCBCEEEECCCSS--SCCCEEEEEEEEEE-EEEEEEEEECCTTSTTCCEEEEEEEEEEEE
T ss_pred HHHHHHhcCCcEEEEccccCcceEEEEEEccCC--CCccEEEECCEEEe-CCCeEEcccCccCcCCccccccCchhhEEE
Confidence 7999999 9999999999999999999998643 23578999999997 777788899999999999999999999999
Q ss_pred EEcCCCCEEEEEEeccceehhhhhhhhcCcccC
Q 033765 80 ARDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112 (112)
Q Consensus 80 ~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~lf 112 (112)
|+|++|++++++++||+|||+|||+|||+|+||
T Consensus 114 ~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLf 146 (171)
T 3qu1_A 114 ALDREGKPLRIETSDFLAIVMQHEIDHLSGNLF 146 (171)
T ss_dssp EECTTSCEEEEEECSTHHHHHHHHHHHHTTCCG
T ss_pred EECCCCCEEEEEEECHHHHHHhHHHHhhCCEeh
Confidence 999999999999999999999999999999998
No 15
>2w3t_A Peptide deformylase; protein biosynthesis, iron, nickel, hydrolase, metal-binding; 1.69A {Escherichia coli} PDB: 2w3u_A
Probab=100.00 E-value=1.9e-52 Score=307.70 Aligned_cols=109 Identities=42% Similarity=0.635 Sum_probs=102.8
Q ss_pred ChhhhhcCCCeEEeccccCccceEEEEEeCCCCCCCceeEEEcceeeeeCCceecCeeccceeCCCceeeccCCeeEEEE
Q 033765 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (112)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~iNP~I~~~s~~~~~~~EgClS~p~~~~~V~R~~~I~v~~ 80 (112)
|++|||+++|+||||||||+++|+||++..++. ..+.+||||+|+..|++.. .+|||||+||+++.|+||.+|+|+|
T Consensus 34 M~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~~--~~~~vlINP~I~~~s~~~~-~~EGCLSvPg~~~~V~R~~~I~V~~ 110 (188)
T 2w3t_A 34 MFETMYAEEGIGLAATQVDIHQRIIVIDVSENR--DERLVLINPELLEKSGETG-IEEGCLSIPEQRALVPRAEKVKIRA 110 (188)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEECCCTTS--CCCEEEEEEEEEEEESCEE-EEECCTTSTTCCEEEEECSEEEEEE
T ss_pred HHHHHHhCCCEEEEhHHcCcceEEEEEEccCCc--CceEEEECCEEEecCCCEE-eecCccCcCCEEEEEEcccEEEEEE
Confidence 899999999999999999999999999986432 2468999999999999877 8999999999999999999999999
Q ss_pred EcCCCCEEEEEEeccceehhhhhhhhcCcccC
Q 033765 81 RDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112 (112)
Q Consensus 81 ~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~lf 112 (112)
+|++|++++++++||+|||+|||+|||+|+||
T Consensus 111 ~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLf 142 (188)
T 2w3t_A 111 LDRDGKPFELEADGLLAICIQHEMDHLVGKLF 142 (188)
T ss_dssp ECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCG
T ss_pred ECCCCCEEEEEEECCeEEeeeehHHHhCCEeE
Confidence 99999999999999999999999999999998
No 16
>1v3y_A Peptide deformylase; protein synthesis, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.81A {Thermus thermophilus} SCOP: d.167.1.1
Probab=100.00 E-value=2.9e-52 Score=307.72 Aligned_cols=111 Identities=34% Similarity=0.612 Sum_probs=100.2
Q ss_pred ChhhhhcCCCeEEeccccCccceEEEE-EeCCCCC----------CCceeEEEcceeeeeCCceecCeeccceeCCCce-
Q 033765 1 MFDVMYKTDGIGLSAPQVGINVQLMVF-NPVGERG----------EGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHA- 68 (112)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi-~~~~~~~----------~~~~~v~iNP~I~~~s~~~~~~~EgClS~p~~~~- 68 (112)
|++|||+++|+||||||||+++|+||+ +.+++.. ...+.+||||+|+..|++.. .+|||||+||+++
T Consensus 33 M~eTM~~~~GvGLAApQIGv~~ri~Vi~d~~~~~~~~~~~~~~~~~~~~~vlINP~I~~~s~~~~-~~EGCLSvPg~~~g 111 (192)
T 1v3y_A 33 MLETMFEAKGVGLAAPQIGLSQRLFVAVEYADEPEGEEERPLRELVRRVYVVANPVITYREGLVE-GTEGCLSLPGLYSE 111 (192)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEEEC------------CTTTCSCEEEEEEEEEEEEECCEE-EEECCTTSTTCCEE
T ss_pred HHHHHHhCCCcEEEecccCcceEEEEEEccCccccccccccccccccCceEEECCEEEEcCCcEE-EeCCCCCcCCEecc
Confidence 899999999999999999999999999 7643210 13568999999999999876 8999999999999
Q ss_pred eeccCCeeEEEEEcCCCCEEEEEEeccceehhhhhhhhcCcccC
Q 033765 69 DVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112 (112)
Q Consensus 69 ~V~R~~~I~v~~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~lf 112 (112)
.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||
T Consensus 112 ~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLf 155 (192)
T 1v3y_A 112 EVPRAERIRVEYQDEEGRGRVLELEGYMARVFQHEIDHLDGILF 155 (192)
T ss_dssp EEEECSEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCG
T ss_pred cccccCEEEEEEECCCCCEEEEEEeccEEEEeehhhHhhCCEeE
Confidence 99999999999999999999999999999999999999999998
No 17
>1zxz_A PDF, peptide deformylase, mitochondrial; PDF1A, eukaryote, higher plant, zinc ION, hydrolase; 2.80A {Arabidopsis thaliana} PDB: 1zy0_A 1zy1_A
Probab=100.00 E-value=2.2e-52 Score=309.37 Aligned_cols=112 Identities=39% Similarity=0.601 Sum_probs=102.7
Q ss_pred ChhhhhcCCCeEEeccccCccceEEEEEeCCC--------------CCCCceeEEEcceeeeeCCceecCeeccceeCCC
Q 033765 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE--------------RGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGI 66 (112)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~--------------~~~~~~~v~iNP~I~~~s~~~~~~~EgClS~p~~ 66 (112)
|++|||+++|+||||||||+++|+||++.... ....++.+||||+|+..|+++...+|||||+||+
T Consensus 38 M~eTM~~~~GVGLAApQIGv~~Ri~Vid~~~~~~~~~~~~~~~~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~ 117 (197)
T 1zxz_A 38 MIKVMRLAPGVGLAAPQIGVPLRIIVLEDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGF 117 (197)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEEEECHHHHHSSCHHHHHHTTCCCEEEEEEEEEEEEESSSCEEEEEEEETTEEEE
T ss_pred HHHHHHhCCCcEEEccccCcceEEEEEEcCcccccccccccccccccCCCCceEEECCEEEecCCCEEeeeeCCcccCCe
Confidence 79999999999999999999999999996421 1111358999999999999887889999999999
Q ss_pred ceeeccCCeeEEEEEcCCCCEEEEEEeccceehhhhhhhhcCcccC
Q 033765 67 HADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112 (112)
Q Consensus 67 ~~~V~R~~~I~v~~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~lf 112 (112)
++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||
T Consensus 118 ~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLf 163 (197)
T 1zxz_A 118 RAAVERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLY 163 (197)
T ss_dssp EEEEEEESEEEEEEECTTCCEEEEEEEHHHHHHHHHHHHHHTTCCG
T ss_pred eeeEecccEEEEEEECCCCCEEEEEEeChhhhHHHHHHHHhCCEee
Confidence 9999999999999999999999999999999999999999999998
No 18
>3e3u_A Peptide deformylase; metallo-enzyme, hydrolase, iron, metal-binding, protein biosynthesis; HET: NVC; 1.56A {Mycobacterium tuberculosis}
Probab=100.00 E-value=5.6e-52 Score=307.19 Aligned_cols=112 Identities=30% Similarity=0.509 Sum_probs=101.5
Q ss_pred ChhhhhcCCCeEEeccccCccceEEEEEeCCC--CCCCceeEEEcceeeeeCCce-----ecCeeccceeCCCceeeccC
Q 033765 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE--RGEGEEIVLVNPRVNKYSNKM-----IPYEEGCLSFPGIHADVERP 73 (112)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~--~~~~~~~v~iNP~I~~~s~~~-----~~~~EgClS~p~~~~~V~R~ 73 (112)
|++|||+++|+||||||||+++|+||++.++. .....+.+||||+|+..++.. ...+|||||+||+++.|+||
T Consensus 40 M~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~~~~~~~~~~vlINP~I~~~~~~~~~~e~~~~~EGCLSvPg~~~~V~R~ 119 (197)
T 3e3u_A 40 MYDTMDAANGVGLAANQIGCSLRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRA 119 (197)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEEECCTTBCTTSCSEEEEEEEEEEESCCCCSCCCTTTCEEECTTSTTCEEECCCC
T ss_pred HHHHHHHCCCeEEEccccCcceEEEEEEcCcccccccccceEEEcCEEEccCcceeccccccccCCCCCcCCCceeccCC
Confidence 89999999999999999999999999998653 222357899999999754432 36899999999999999999
Q ss_pred CeeEEEEEcCCCCEEEEEEeccceehhhhhhhhcCcccC
Q 033765 74 ESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112 (112)
Q Consensus 74 ~~I~v~~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~lf 112 (112)
.+|+|+|+|++|++++++++||+|||+|||+|||+|+||
T Consensus 120 ~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLf 158 (197)
T 3e3u_A 120 KWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLY 158 (197)
T ss_dssp SEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCG
T ss_pred CeEEEEEECCCCCEEEEEEEChhhhhhhhhhHhhCCEee
Confidence 999999999999999999999999999999999999998
No 19
>2okl_A Peptide deformylase 2; hydrolase; HET: BB2 CIT; 1.70A {Bacillus cereus} PDB: 1lqy_A*
Probab=100.00 E-value=1.6e-51 Score=302.24 Aligned_cols=112 Identities=33% Similarity=0.541 Sum_probs=101.6
Q ss_pred Chhhhhc------------CCCeEEeccccCccceEEEEEeCCCCCCCceeEEEcceeeeeCCcee--cCeeccceeCC-
Q 033765 1 MFDVMYK------------TDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMI--PYEEGCLSFPG- 65 (112)
Q Consensus 1 m~~tm~~------------~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~iNP~I~~~s~~~~--~~~EgClS~p~- 65 (112)
|++||++ ++|+||||||||+++|+||++.++..+...+.+||||+|+..|++.. ..+|||||+||
T Consensus 38 M~eTm~~~~~~~~~~~y~~~~GvGLAApQIGv~~ri~vid~~~~~~~~~~~vlINP~I~~~s~~~~~~~~~EGCLSvPg~ 117 (185)
T 2okl_A 38 MIEFVINSQDPEMAEKYSLRPGIGLAAPQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDRE 117 (185)
T ss_dssp HHHHHHHHTSHHHHHHTTCCCCSEEEGGGGTCCBSEEEEEEECTTCCEEEEEEEEEEEEEECSSEEECTTCCCCTTCCSC
T ss_pred HHHHHHhhhhcchhccccCCCeEEEEhhhcCcCeeEEEEEccCccCCccceEEECCEEEccCCcCccCCCCccCccccCe
Confidence 7899953 68999999999999999999986432233468999999999999865 56999999997
Q ss_pred CceeeccCCeeEEEEEcCCCCEEEEEEeccceehhhhhhhhcCcccC
Q 033765 66 IHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112 (112)
Q Consensus 66 ~~~~V~R~~~I~v~~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~lf 112 (112)
+++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||
T Consensus 118 ~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLf 164 (185)
T 2okl_A 118 VPGYVPRYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMF 164 (185)
T ss_dssp CCSCCCEESEEEEEEEETTSCEEEEEEEHHHHHHHHHHHHHHTTCCG
T ss_pred eeEEeecccEEEEEEECCCCCEEEEEEeCceEEehhhhHHHhCCEee
Confidence 99999999999999999999999999999999999999999999998
No 20
>2os0_A Peptide deformylase; PDF, hydrolase; 1.30A {Enterococcus faecalis} PDB: 2os1_A* 3g6n_A 3cmd_A
Probab=100.00 E-value=4.8e-51 Score=300.31 Aligned_cols=112 Identities=26% Similarity=0.445 Sum_probs=100.0
Q ss_pred Chhhhhc------------CCCeEEeccccCccceEEEEEeCC-CCCC---CceeEEEcceeeeeCCcee--cCeeccce
Q 033765 1 MFDVMYK------------TDGIGLSAPQVGINVQLMVFNPVG-ERGE---GEEIVLVNPRVNKYSNKMI--PYEEGCLS 62 (112)
Q Consensus 1 m~~tm~~------------~~gvGLAApQIG~~~ri~vi~~~~-~~~~---~~~~v~iNP~I~~~s~~~~--~~~EgClS 62 (112)
|++||++ ++|+||||||||+++|+||++.++ .... ..+.+||||+|+..|++.. ..+|||||
T Consensus 37 M~eTm~~~~~~~~~~~y~~~~GvGLAApQIGv~~ri~vid~~~~~~~~~~~~~~~vlINP~I~~~s~~~~~~~~~EGCLS 116 (188)
T 2os0_A 37 MLTFLKNSQDPVKAEELQLRGDVGLAAPQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLS 116 (188)
T ss_dssp HHHHHHHHHSHHHHHHHTCCCCSEEEGGGGTCCBSEEEEEECC---------EEEEEEEEEEEEECSCEEEETTCCCCTT
T ss_pred HHHHHHhhhhcchhcccccCCcEEEEhhhcCcceeEEEEECCCcccccccccccEEEEcCEEEecCCcEecCCCCcCcce
Confidence 7899953 689999999999999999999864 2111 2468999999999999865 56999999
Q ss_pred eCC-CceeeccCCeeEEEEEcCCCCEEEEEEeccceehhhhhhhhcCcccC
Q 033765 63 FPG-IHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112 (112)
Q Consensus 63 ~p~-~~~~V~R~~~I~v~~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~lf 112 (112)
+|| +++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||
T Consensus 117 vPg~~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLf 167 (188)
T 2os0_A 117 VDRDVPGYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMF 167 (188)
T ss_dssp CCSCCCSCCCEESEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCG
T ss_pred ECCCeEEEeecccEEEEEEECCCCCEEEEEEeCceeEhhhhHHHHhCCEee
Confidence 997 99999999999999999999999999999999999999999999998
No 21
>1lm4_A Peptide deformylase PDF1; metalloenzyme, hydrolase; 1.45A {Staphylococcus aureus} SCOP: d.167.1.1 PDB: 1lqw_A 2ai9_A 1lmh_A 1q1y_A*
Probab=100.00 E-value=8e-51 Score=300.41 Aligned_cols=112 Identities=34% Similarity=0.594 Sum_probs=101.3
Q ss_pred Chhhhhc------------CCCeEEeccccCccceEEEEEeCCC-CCCCceeEEEcceeeeeCCcee--cCeeccceeCC
Q 033765 1 MFDVMYK------------TDGIGLSAPQVGINVQLMVFNPVGE-RGEGEEIVLVNPRVNKYSNKMI--PYEEGCLSFPG 65 (112)
Q Consensus 1 m~~tm~~------------~~gvGLAApQIG~~~ri~vi~~~~~-~~~~~~~v~iNP~I~~~s~~~~--~~~EgClS~p~ 65 (112)
|++||++ ++|+||||||||+++|+||++.++. .+...+.+||||+|+..|++.. ..+|||||+||
T Consensus 48 M~eTM~~~~~~~~~~~y~~~~GVGLAApQIGv~~Ri~vid~~~~~~~~~~~~vlINP~Ii~~s~e~~~~~~~EGCLSvPg 127 (194)
T 1lm4_A 48 MREFLVNSQDEEIAKRYGLRSGVGLAAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDD 127 (194)
T ss_dssp HHHHHHHHHSHHHHHHHTCCCBSEEEGGGGTCCBSEEEEEECCCSSSCCEEEEEEEEEEEEECSSEEECTTCCCCTTCSS
T ss_pred HHHHHHhhhhcchhhhcccCCceEEEecccCcceeEEEEEcCCccccccccEEEECCEEEecCCcEecCCCCcCCceECC
Confidence 7899953 6899999999999999999998643 1123468999999999999865 56999999997
Q ss_pred -CceeeccCCeeEEEEEcCCCCEEEEEEeccceehhhhhhhhcCcccC
Q 033765 66 -IHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112 (112)
Q Consensus 66 -~~~~V~R~~~I~v~~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~lf 112 (112)
+++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||
T Consensus 128 ~~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLf 175 (194)
T 1lm4_A 128 NVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMF 175 (194)
T ss_dssp CCCSCCCEESEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCG
T ss_pred ceeEEeccccEEEEEEECCCCCEEEEEEeCceeEhhhhHHHHhCCEee
Confidence 99999999999999999999999999999999999999999999998
No 22
>3svj_P Peptide deformylase 3; alpha-beta, metal binding protein, HYDR hydrolase inhibitor complex; HET: 4LI; 1.55A {Streptococcus pneumoniae} SCOP: d.167.1.1 PDB: 3str_P* 3sw8_P* 4eox_P* 1lm6_A 2aia_A* 2ai7_A* 2aie_P* 2os3_A*
Probab=100.00 E-value=1.8e-50 Score=300.36 Aligned_cols=112 Identities=28% Similarity=0.435 Sum_probs=99.9
Q ss_pred Chhhhhc------------CCCeEEeccccCccceEEEEEeCCCC------CC--CceeEEEcceeeeeCCcee--cCee
Q 033765 1 MFDVMYK------------TDGIGLSAPQVGINVQLMVFNPVGER------GE--GEEIVLVNPRVNKYSNKMI--PYEE 58 (112)
Q Consensus 1 m~~tm~~------------~~gvGLAApQIG~~~ri~vi~~~~~~------~~--~~~~v~iNP~I~~~s~~~~--~~~E 58 (112)
|++|||+ ++|+||||||||+++|+||++.++.. .. ..+.+||||+|+..|++.. ..+|
T Consensus 49 M~eTM~~~~d~~~~~~~~~~~GVGLAApQIGv~~Ri~Vid~~~~~~~~~~~~~~~~~~~vlINP~I~~~s~~~~~~~~~E 128 (203)
T 3svj_P 49 MMQFLKHSQDPVMAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGE 128 (203)
T ss_dssp HHHHHHHHTSHHHHHHHTCCCCSEEEGGGGTCCBSEEEEEEECC---------CEEEEEEEEEEEEEEECSSEEEETTCC
T ss_pred HHHHHHHhccchhhhccccCCcEEEeccccCCceeEEEEEcCccccccccccccCcccEEEECCEEEecCCceecccccc
Confidence 7889987 47999999999999999999986431 11 1368999999999998764 5799
Q ss_pred ccceeC-CCceeeccCCeeEEEEEcCCCCEEEEEEeccceehhhhhhhhcCcccC
Q 033765 59 GCLSFP-GIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112 (112)
Q Consensus 59 gClS~p-~~~~~V~R~~~I~v~~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~lf 112 (112)
||||+| |+++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||
T Consensus 129 GCLSvPg~~~g~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLf 183 (203)
T 3svj_P 129 GCLSVDRNVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMF 183 (203)
T ss_dssp CCTTCCSCCCSCBCEESSEEEEEECTTSCEEEEEECHHHHHHHHHHHHHHTTCCG
T ss_pred CccCcCCCcEEEecCcceeEEEEECCCCCEEEEEEEChhhhhhhhHhHhcCCEee
Confidence 999999 689999999999999999999999999999999999999999999998
No 23
>3l87_A Peptide deformylase; hydrolase, iron, metal-binding, PR biosynthesis; 2.00A {Streptococcus mutans}
Probab=100.00 E-value=1.5e-49 Score=300.99 Aligned_cols=112 Identities=29% Similarity=0.401 Sum_probs=100.2
Q ss_pred Chhhhhc------------CCCeEEeccccCccceEEEEEeCCCC-------CC--CceeEEEcceeeeeCCcee--cCe
Q 033765 1 MFDVMYK------------TDGIGLSAPQVGINVQLMVFNPVGER-------GE--GEEIVLVNPRVNKYSNKMI--PYE 57 (112)
Q Consensus 1 m~~tm~~------------~~gvGLAApQIG~~~ri~vi~~~~~~-------~~--~~~~v~iNP~I~~~s~~~~--~~~ 57 (112)
|++|||+ ++|+||||||||+++|+||++.++.. .. ..+.+||||+|+..|++.. ..+
T Consensus 83 M~eTM~~a~d~~~~~~~~~a~GVGLAAPQIGv~kRi~Vid~~~~~~~~~~~~~~~~~~~~vlINP~Ii~~s~e~~~~~~~ 162 (238)
T 3l87_A 83 MLQFLKNSQDPVTAEKMELRGGVGLAAPQLDISKRIIAVLIPNPEDKDGNPPKEAYALKEVMYNPRIIAHSVQDAALADG 162 (238)
T ss_dssp HHHHHHHHHSHHHHHHHTCCCCSEEEGGGGTCCBSEEEEEEECCCC----CCSSSEEEEEEEEEEEEEEECSSEEEETTC
T ss_pred HHHHHHHhccchhhhhcccCCceEEeccccCCceeEEEEEcCcccccccccccccCcccEEEECCEEEeccCceeccccc
Confidence 7889986 47999999999999999999986431 01 1368999999999998764 579
Q ss_pred eccceeC-CCceeeccCCeeEEEEEcCCCCEEEEEEeccceehhhhhhhhcCcccC
Q 033765 58 EGCLSFP-GIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQVFVL 112 (112)
Q Consensus 58 EgClS~p-~~~~~V~R~~~I~v~~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~lf 112 (112)
|||||+| ++++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||
T Consensus 163 EGCLSvPg~~~g~V~R~~~I~V~~~D~~G~~~~~~~~G~lAr~iQHEiDHLdGiLf 218 (238)
T 3l87_A 163 EGCLSVDRVVEGYVIRHSRVTIEYYDKNSDKKKLKLKGYQSIVVQHEIDHTNGIMF 218 (238)
T ss_dssp CCCTTCCSCCCSCBCEESCEEEEEECTTCCEEEEEECHHHHHHHHHHHHHHTTCCG
T ss_pred CCCcccCCCccEEecChhheEEEEECCCCCEEEEEEeChhhhHHhHHhHhcCCEee
Confidence 9999999 689999999999999999999999999999999999999999999998
No 24
>2kvz_A ISPE; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Listeria monocytogenes}
Probab=52.18 E-value=12 Score=23.47 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=18.6
Q ss_pred ccCCeeEEEEEcCCCCEEEE--EEecc
Q 033765 71 ERPESVKIDARDINGARFSV--SLSDL 95 (112)
Q Consensus 71 ~R~~~I~v~~~d~~g~~~~~--~~~g~ 95 (112)
.....|+|+|.|.+|+...- .++|.
T Consensus 4 ~k~~~VtV~YvDe~Gn~La~~~~ltG~ 30 (85)
T 2kvz_A 4 GKPNQVTVNYLDENNTSIAPSLYLSGL 30 (85)
T ss_dssp SCCCCEEEEEECSSSCEEEEEEEECCC
T ss_pred ccCCeEEEEEECCCCCCCCCCeEEeee
Confidence 35678999999999998653 44553
No 25
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=43.28 E-value=23 Score=22.41 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=22.7
Q ss_pred ccceeCCCceeeccC---CeeEEEEEcCCCCEEEEEEe
Q 033765 59 GCLSFPGIHADVERP---ESVKIDARDINGARFSVSLS 93 (112)
Q Consensus 59 gClS~p~~~~~V~R~---~~I~v~~~d~~g~~~~~~~~ 93 (112)
.|.++..+.+.|.+. ..+.|+|.|.+|.++.+.-+
T Consensus 26 ~~~tweel~~mvk~~f~L~~~~ikY~DEenD~v~i~Sq 63 (87)
T 2bkf_A 26 ENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQ 63 (87)
T ss_dssp GGCCHHHHHHHHHHHHTCSSEEEEEECTTSCEEEECSH
T ss_pred CCCCHHHHHHHHHHHcCCCceEEEEEcCCCCEEEEecH
Confidence 344444444434332 36799999999999988543
No 26
>3npp_A PFAM DUF1093 family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.15A {Bacillus subtilis}
Probab=35.99 E-value=38 Score=20.84 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=17.7
Q ss_pred CeeEEEEEcCCCCEEEEEEec
Q 033765 74 ESVKIDARDINGARFSVSLSD 94 (112)
Q Consensus 74 ~~I~v~~~d~~g~~~~~~~~g 94 (112)
..=++.++|.+|+..++++..
T Consensus 28 y~Y~l~~yde~G~~k~l~f~~ 48 (87)
T 3npp_A 28 TEYTLDGYNASGKKEEVTFFA 48 (87)
T ss_dssp EEEEEEEECTTCCEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEc
Confidence 446889999999999998864
No 27
>2k5q_A Hypothetical membrane associated protein BCR97A; NESG, Q812L6 protein, GFT structural genomics, PSI-2, protein structure initiative; NMR {Bacillus cereus atcc 14579} SCOP: b.40.13.1
Probab=35.32 E-value=37 Score=21.81 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=17.0
Q ss_pred eEEEEEcCCCCEEEEEEec
Q 033765 76 VKIDARDINGARFSVSLSD 94 (112)
Q Consensus 76 I~v~~~d~~g~~~~~~~~g 94 (112)
=++.++|.+|+.+++++++
T Consensus 37 Y~l~~yde~Gkek~l~f~~ 55 (105)
T 2k5q_A 37 YKLTGFDKDGKEKELEFTA 55 (105)
T ss_dssp EEEEEECSSCCEEEEEEEE
T ss_pred EEEEEECCCCCEEEEEEec
Confidence 5889999999999999876
No 28
>2kt7_A Putative peptidoglycan bound protein (LPXTG motif); immunoglobulin fold, all-beta, peptidoglycan binding protein, structural genomics; NMR {Listeria monocytogenes}
Probab=33.49 E-value=30 Score=22.27 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=16.9
Q ss_pred CCeeEEEEEcCCCCEEEE--EEec
Q 033765 73 PESVKIDARDINGARFSV--SLSD 94 (112)
Q Consensus 73 ~~~I~v~~~d~~g~~~~~--~~~g 94 (112)
...|+|+|.|.+|+...- .++|
T Consensus 5 ~~~VtV~YvDe~Gn~Ia~~~~ltG 28 (102)
T 2kt7_A 5 NFTVKVEYVDADGAEIAPSDTLTD 28 (102)
T ss_dssp TCCEEEEEEETTSSEEEEEEEECS
T ss_pred CCEEEEEEEcCCCCCCCCCEeecC
Confidence 467999999999998653 4445
No 29
>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A*
Probab=30.15 E-value=28 Score=21.19 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=26.7
Q ss_pred ecCeeccceeC-CCce-eeccCC-----eeEEEEEcCCCCEEE
Q 033765 54 IPYEEGCLSFP-GIHA-DVERPE-----SVKIDARDINGARFS 89 (112)
Q Consensus 54 ~~~~EgClS~p-~~~~-~V~R~~-----~I~v~~~d~~g~~~~ 89 (112)
.+.|..|..+| |... .+.|.. +..|-|++..|+++.
T Consensus 2 ~~~~~~~p~LP~GW~Re~~~R~~g~s~gk~DvyY~sP~Gkk~R 44 (75)
T 1d9n_A 2 AEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIR 44 (75)
T ss_dssp CSCCEECTTTCSSCEEEECSSSSSCTTCCCCEEEECSSSCEEC
T ss_pred CcccccCCCCCCCCEEEEEEecCCCCCCceEEEEECCCCCeee
Confidence 35688999998 6644 345654 677889999999865
No 30
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=29.93 E-value=19 Score=22.63 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=18.0
Q ss_pred eccCCeeEEEEEcCCCCEEEEE
Q 033765 70 VERPESVKIDARDINGARFSVS 91 (112)
Q Consensus 70 V~R~~~I~v~~~d~~g~~~~~~ 91 (112)
+.+...++++|.|++|.+.++.
T Consensus 41 ~~~~~~f~lky~DEeGD~itis 62 (89)
T 1vd2_A 41 FDNEQLFTMKWIDEEGDPCTVS 62 (89)
T ss_dssp CCSSCCEEEEECCSSSCCEECC
T ss_pred CCCCCeEEEEEECCCCCccccc
Confidence 3466779999999999998764
No 31
>2k5w_A Hypothetical cytosolic protein BCR103A; unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus cereus atcc 14579} SCOP: b.40.13.1
Probab=28.61 E-value=52 Score=21.69 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=18.7
Q ss_pred CeeEEEEEcCCCCEEEEEEecc
Q 033765 74 ESVKIDARDINGARFSVSLSDL 95 (112)
Q Consensus 74 ~~I~v~~~d~~g~~~~~~~~g~ 95 (112)
..=++.++|.+|+..+++++.-
T Consensus 33 Y~Y~l~~yDe~GkeK~v~f~~~ 54 (117)
T 2k5w_A 33 RNYTLPAYDEDGVKKQITFRST 54 (117)
T ss_dssp ECEEEEEEETTCCEEEEEECCC
T ss_pred EEEEEEEEcCCCCEEEEEEEee
Confidence 3468999999999999999864
No 32
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=28.27 E-value=35 Score=21.41 Aligned_cols=43 Identities=16% Similarity=0.263 Sum_probs=32.4
Q ss_pred eecCeeccceeCCCceeeccCCeeEEEEEcCCCCEEEEEEeccce
Q 033765 53 MIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPA 97 (112)
Q Consensus 53 ~~~~~EgClS~p~~~~~V~R~~~I~v~~~d~~g~~~~~~~~g~~A 97 (112)
-...|..|.-.|+.-..|.-...-+|+|+| |...+++....-+
T Consensus 28 VlArW~D~~yYPAkI~sV~~~~~YtV~F~D--G~~etvk~~~IKp 70 (85)
T 3qii_A 28 VLACWSDCRFYPAKVTAVNKDGTYTVKFYD--GVVQTVKHIHVKA 70 (85)
T ss_dssp EEEECTTSCEEEEEEEEECTTSEEEEEETT--SCEEEEEGGGEEE
T ss_pred EEEEeCCCCEeeEEEEEECCCCeEEEEEeC--CCeEEecHHHccc
Confidence 345678899999876777777789999998 8888776655433
No 33
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=27.73 E-value=64 Score=20.67 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=21.2
Q ss_pred CCeeEEEEEcCCCCEEEEEEeccceehhh
Q 033765 73 PESVKIDARDINGARFSVSLSDLPARVFQ 101 (112)
Q Consensus 73 ~~~I~v~~~d~~g~~~~~~~~g~~Ar~~Q 101 (112)
...+++.|.|.+|..+++.-+.-+-..++
T Consensus 60 ~~~f~l~Y~DedGDlItiSsDeEL~~Al~ 88 (102)
T 2kkc_A 60 PGGFQAHYRAERGDLVAFSSDEELTMAMS 88 (102)
T ss_dssp SSCEEEEEECTTCCEEEECSHHHHHHHHH
T ss_pred CCcEEEEEECCCCCEEEecCHHHHHHHHH
Confidence 45689999999999999865554433333
No 34
>3hh2_A Growth/differentiation factor 8; protein-protein complex, TB domain, cystine knot motif, TGF- fold, disulfide linked dimer, CLE PAIR of basic residues, cytokine; HET: CIT; 2.15A {Mus musculus} SCOP: g.17.1.0 PDB: 3sek_B*
Probab=25.76 E-value=1.1e+02 Score=19.45 Aligned_cols=35 Identities=3% Similarity=-0.076 Sum_probs=26.3
Q ss_pred eCCCceeeccCCeeEEEEEcCCCCEEEEEEeccce
Q 033765 63 FPGIHADVERPESVKIDARDINGARFSVSLSDLPA 97 (112)
Q Consensus 63 ~p~~~~~V~R~~~I~v~~~d~~g~~~~~~~~g~~A 97 (112)
+|..-..-++...+.+-|+|.+|+.+..+++++.+
T Consensus 69 ~~~pCCvPt~l~~ls~ly~d~~~~v~~~~~~~Mvv 103 (109)
T 3hh2_A 69 SAGPCCTPTKMSPINMLYFNGKEQIIYGKIPAMVV 103 (109)
T ss_dssp CCCCCEEEEEEEEEEEEEECTTCCEEEEEEEEEEE
T ss_pred CCCceEeeeeeccEEEEEEeCCCCEEEEEcCCeEE
Confidence 45544556788889999999999876677777655
No 35
>2arp_A Inhibin beta A chain; cystine knot, disulfide rich, EGF domain, kazal domain, PROT complex, hormone-growth factor complex; HET: 1PG; 2.00A {Homo sapiens} SCOP: g.17.1.2 PDB: 1nyu_B 1nys_B 1s4y_B* 2arv_A* 2b0u_A 2p6a_A 3b4v_A*
Probab=25.54 E-value=72 Score=20.50 Aligned_cols=31 Identities=3% Similarity=-0.035 Sum_probs=24.2
Q ss_pred eeeccCCeeEEEEEcCCCCEEEEEEecccee
Q 033765 68 ADVERPESVKIDARDINGARFSVSLSDLPAR 98 (112)
Q Consensus 68 ~~V~R~~~I~v~~~d~~g~~~~~~~~g~~Ar 98 (112)
..-.+...|.+-|+|.+|+.+..++.++.+.
T Consensus 81 CvPt~l~~ls~ly~d~~~~v~~~~~~~Mvv~ 111 (116)
T 2arp_A 81 CVPTKLRPMSMLYYDDGQNIIKKDIQNMIVE 111 (116)
T ss_dssp EEEEEEEEEEEEEECTTCCEEEEEEEEEEEE
T ss_pred cccccCccEEEEEEeCCCCEEEEEcCCeEEe
Confidence 3446778899999999988887788776653
No 36
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=24.84 E-value=46 Score=21.30 Aligned_cols=28 Identities=14% Similarity=0.022 Sum_probs=20.2
Q ss_pred CeeEEEEEcCCCCEEEEEEeccceehhh
Q 033765 74 ESVKIDARDINGARFSVSLSDLPARVFQ 101 (112)
Q Consensus 74 ~~I~v~~~d~~g~~~~~~~~g~~Ar~~Q 101 (112)
...+++|.|++|..+++.-+.-+-.++|
T Consensus 56 ~~~klkYkDEdGD~Vtl~sddDl~~A~e 83 (98)
T 1q1o_A 56 PITKIKYQDEDGDFVVLGSDEDWNVAKE 83 (98)
T ss_dssp CCCCEEEECSSSCEEEECSHHHHHHHHH
T ss_pred ceeEEEEEcCCCCEEEEcCHHHHHHHHH
Confidence 5579999999999888765554444433
No 37
>2qcq_A Bone morphogenetic protein 3; BMP, TGF-beta, signaling protein; 2.21A {Homo sapiens}
Probab=24.40 E-value=1.2e+02 Score=19.18 Aligned_cols=34 Identities=18% Similarity=0.048 Sum_probs=24.7
Q ss_pred CCCceeeccCCeeEEEEEcCCCCEEEEEEeccce
Q 033765 64 PGIHADVERPESVKIDARDINGARFSVSLSDLPA 97 (112)
Q Consensus 64 p~~~~~V~R~~~I~v~~~d~~g~~~~~~~~g~~A 97 (112)
|..-..-++...+.+-|+|.+|+.+..++.+..+
T Consensus 71 ~~pCCvPt~l~~ls~ly~d~~~~v~~~~~~~Mvv 104 (110)
T 2qcq_A 71 PEPCCVPEKMSSLSILFFDENKNVVLKVYPNMTV 104 (110)
T ss_dssp CCCCEEECSEEEEEEEEECTTCCEEEEEEEEEEE
T ss_pred CCCcCCCeeEccEEEEEEeCCCCEEEEEcCCcEE
Confidence 3333445677789999999998877777777655
No 38
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=24.03 E-value=48 Score=19.72 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=31.5
Q ss_pred ecCeeccceeCCCceeeccCCeeEEEEEcCCCCEEEEEEeccce
Q 033765 54 IPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPA 97 (112)
Q Consensus 54 ~~~~EgClS~p~~~~~V~R~~~I~v~~~d~~g~~~~~~~~g~~A 97 (112)
...|..|.-.|+.-..|.-....+|+|+| |...+++.....+
T Consensus 14 mArW~D~~yYpA~I~si~~~~~Y~V~F~d--G~~etvk~~~ikp 55 (67)
T 3p8d_A 14 LACWSDCRFYPAKVTAVNKDGTYTVKFYD--GVVQTVKHIHVKA 55 (67)
T ss_dssp EEECTTSCEEEEEEEEECTTSEEEEEETT--SCEEEEEGGGEEE
T ss_pred EEEcCCCCEeeEEEEEECCCCeEEEEEeC--CceEEEeHHHccc
Confidence 34578888889876777777789999988 8888777655443
No 39
>3lqb_A Hatching enzyme, LOC792177 protein; hydrolase, metalloprotease, astacin, metal- protease; 1.10A {Danio rerio}
Probab=22.52 E-value=38 Score=24.07 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=19.1
Q ss_pred CCEEEEEEec---cceehhhhhhhhcCccc
Q 033765 85 GARFSVSLSD---LPARVFQHEFDHLQVFV 111 (112)
Q Consensus 85 g~~~~~~~~g---~~Ar~~QHEiDHL~G~l 111 (112)
|..+.+.+.. +....++||+=|.-|..
T Consensus 79 gg~q~~sl~~~~C~~~g~i~HEl~HaLGf~ 108 (199)
T 3lqb_A 79 GGKQVVSLNRKGCVYSGIAQHELNHALGFY 108 (199)
T ss_dssp SSEEEEEECTTTCCSHHHHHHHHHHHHTCC
T ss_pred CCcceEEecCCCCCccchHHHHHHHHhccc
Confidence 4556666653 45679999999988753
No 40
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=22.46 E-value=89 Score=20.56 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=19.4
Q ss_pred cCCeeEEEEEcCCCCEEEEEEeccc
Q 033765 72 RPESVKIDARDINGARFSVSLSDLP 96 (112)
Q Consensus 72 R~~~I~v~~~d~~g~~~~~~~~g~~ 96 (112)
+...+++.|.|.+|..+++.-+.-+
T Consensus 74 ~~~~f~l~YkDEdGDlItISsDeEL 98 (117)
T 2ktr_A 74 RPGGFQAHYRAERGDLVAFSSDEEL 98 (117)
T ss_dssp CSSCEEEEEECTTCCEEEECSHHHH
T ss_pred CCCcEEEEEECCCCCEEEecCHHHH
Confidence 3456899999999999998654433
No 41
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=22.44 E-value=23 Score=23.03 Aligned_cols=18 Identities=17% Similarity=0.318 Sum_probs=15.2
Q ss_pred CeeEEEEEcCCCCEEEEE
Q 033765 74 ESVKIDARDINGARFSVS 91 (112)
Q Consensus 74 ~~I~v~~~d~~g~~~~~~ 91 (112)
..+.|+|.|.+|+++.+.
T Consensus 52 ~~~~IkY~DEenD~V~i~ 69 (101)
T 1wj6_A 52 NTIQIKYLDEENEEVSIN 69 (101)
T ss_dssp SSBCCEEECTTSCEECCC
T ss_pred CceEEEEecCCCCEEEEe
Confidence 367999999999998764
No 42
>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL, AG I/II protei surface adhesin, peptidoglycan-anchor; 2.30A {Streptococcus gordonii}
Probab=21.20 E-value=34 Score=26.64 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=15.6
Q ss_pred CeeEEEEEcCCCCEEEEE
Q 033765 74 ESVKIDARDINGARFSVS 91 (112)
Q Consensus 74 ~~I~v~~~d~~g~~~~~~ 91 (112)
-.+.++|+|++|+++.++
T Consensus 175 v~v~~~FYDedG~~I~~~ 192 (349)
T 2wd6_A 175 INVKVKFYDEEGQLMNLT 192 (349)
T ss_dssp EEEEEEEECTTCCEECCT
T ss_pred EEEEEEEECCCCCEeecC
Confidence 568999999999998775
No 43
>1zkz_A Growth/differentiation factor 2; glycoprotein, growth factor, cytokine, hormone-growth factor; 2.33A {Homo sapiens}
Probab=20.80 E-value=1.5e+02 Score=18.73 Aligned_cols=30 Identities=7% Similarity=0.018 Sum_probs=22.8
Q ss_pred eeeccCCeeEEEEEcCCCCEEEE-EEeccce
Q 033765 68 ADVERPESVKIDARDINGARFSV-SLSDLPA 97 (112)
Q Consensus 68 ~~V~R~~~I~v~~~d~~g~~~~~-~~~g~~A 97 (112)
..-.+...+.+-|+|.+|+-+.. ++.+..+
T Consensus 74 CvPt~l~~ls~ly~d~~~~v~~~~~~~~Mvv 104 (110)
T 1zkz_A 74 CVPTKLSPISVLYKDDMGVPTLKYHYEGMSV 104 (110)
T ss_dssp EEEEEEEEEEEEEECTTCCEEEEEEEEEEEE
T ss_pred ccceeEccEEEEEEeCCCCEEEeeEeCCEEE
Confidence 34467788999999999987666 7777655
No 44
>2k57_A Putative lipoprotein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pseudomonas syringae PV} SCOP: b.38.1.6
Probab=20.44 E-value=88 Score=18.30 Aligned_cols=38 Identities=5% Similarity=0.096 Sum_probs=24.4
Q ss_pred eeCCceecCeeccceeCCCceeeccCCeeEEEEEcCCCCEEEEEEec
Q 033765 48 KYSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSD 94 (112)
Q Consensus 48 ~~s~~~~~~~EgClS~p~~~~~V~R~~~I~v~~~d~~g~~~~~~~~g 94 (112)
-.+|.++ ...|=+.+..-.+ .++|.|.+|+++.+.-+.
T Consensus 9 t~DG~~I-vT~gKP~~D~dTG--------mysY~D~~G~~~qIn~dd 46 (61)
T 2k57_A 9 LNDGREI-QAVDTPKYDEESG--------FYEFKQLDGKQTRINKDQ 46 (61)
T ss_dssp ESSSCEE-EESSCCEECTTTC--------EEEEEBTTSCEEEEETTT
T ss_pred eCCCcEE-EcCCCccccCCCC--------CEEEEcCCCCEEEEcHHH
Confidence 3445443 4555555555444 578999999999886444
No 45
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=20.09 E-value=39 Score=20.49 Aligned_cols=28 Identities=29% Similarity=0.554 Sum_probs=15.7
Q ss_pred cceeCCCceeeccCCeeEEEEEcCCCCEEEEE
Q 033765 60 CLSFPGIHADVERPESVKIDARDINGARFSVS 91 (112)
Q Consensus 60 ClS~p~~~~~V~R~~~I~v~~~d~~g~~~~~~ 91 (112)
||.+|+.-..+ .....+| |..|.++++.
T Consensus 2 CLaIP~kVvei-~~~~A~v---d~~Gv~r~V~ 29 (75)
T 2z1c_A 2 CLAVPGKVIEV-NGPVAVV---DFGGVKREVR 29 (75)
T ss_dssp CCSCCEEEEEE-ETTEEEE---EETTEEEEEE
T ss_pred cccccEEEEEE-CCCEEEE---EcCCEEEEEE
Confidence 88899865555 3333444 3345555443
No 46
>2rb6_A Uncharacterized protein; NESG, Q8EI81_sheon, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.50A {Shewanella oneidensis} SCOP: b.38.1.6
Probab=20.09 E-value=91 Score=18.24 Aligned_cols=38 Identities=16% Similarity=0.110 Sum_probs=24.0
Q ss_pred eeCCceecCeeccceeCCCceeeccCCeeEEEEEcCCCCEEEEEEec
Q 033765 48 KYSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSD 94 (112)
Q Consensus 48 ~~s~~~~~~~EgClS~p~~~~~V~R~~~I~v~~~d~~g~~~~~~~~g 94 (112)
-.+|.++ ...|=+.+..-.+ .++|.|.+|+.+.+.-+.
T Consensus 9 T~DG~~I-vT~GKP~~D~dTG--------m~sY~D~~G~~~qIn~dd 46 (61)
T 2rb6_A 9 TKDGKMI-TSDSKPKLDKTTG--------MYLYYDEDGREVMIKQED 46 (61)
T ss_dssp ETTSCEE-EESSCCEEETTTT--------EEEEECTTSCEEEEEGGG
T ss_pred eCCCcEE-EcCCCccccCCCC--------CEEEEcCCCCEEEEcHHH
Confidence 3445443 4555555554444 578999999998875433
Done!