Query 033766
Match_columns 112
No_of_seqs 121 out of 776
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 09:49:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033766.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033766hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pfy_A OTU domain-containing p 100.0 2.3E-31 7.9E-36 191.7 7.7 97 2-102 88-184 (185)
2 3by4_A OTU1, ubiquitin thioest 100.0 7.3E-29 2.5E-33 181.8 9.3 91 2-99 48-139 (212)
3 3phx_A RNA-directed RNA polyme 99.9 8.1E-28 2.8E-32 173.1 9.3 100 2-105 66-165 (185)
4 3phu_A RNA-directed RNA polyme 99.9 2.9E-27 9.9E-32 174.1 10.1 99 2-104 66-164 (219)
5 2zfy_A Ubiquitin thioesterase 99.9 2.2E-25 7.4E-30 165.3 9.7 95 2-99 137-234 (234)
6 1tff_A Ubiquitin thiolesterase 99.9 2.5E-25 8.4E-30 165.1 8.9 96 2-101 134-232 (234)
7 4dhi_B Ubiquitin thioesterase 99.9 6.2E-25 2.1E-29 166.7 8.8 107 1-108 171-282 (284)
8 4ddg_A Ubiquitin-conjugating e 99.8 1.9E-21 6.4E-26 153.4 8.6 96 1-99 301-399 (399)
9 3dkb_A Tumor necrosis factor, 94.5 0.092 3.1E-06 41.0 6.4 60 42-102 213-285 (390)
10 3zrh_A Ubiquitin thioesterase 88.7 1.7 5.7E-05 34.6 7.4 76 25-102 263-351 (454)
11 2w3l_A BCL2-XL, apoptosis regu 68.3 2.8 9.6E-05 27.9 2.1 51 2-52 34-95 (144)
12 2vof_A BCL-2-related protein A 66.8 2.7 9.3E-05 28.4 1.9 51 2-52 41-104 (157)
13 2jn4_A Hypothetical protein FI 64.0 0.047 1.6E-06 34.2 -6.8 33 12-44 27-60 (87)
14 1o0l_A Apoptosis regulator BCL 62.6 4.3 0.00015 28.3 2.3 51 3-53 51-112 (188)
15 3sp7_A BCL-2-like protein 1; a 61.6 6.8 0.00023 27.0 3.1 52 2-53 52-114 (172)
16 2xa0_A BCL-2, apoptosis regula 59.5 7.1 0.00024 27.9 3.0 51 2-52 96-157 (207)
17 2ims_A Apoptosis regulator BAK 59.1 3.1 0.00011 28.5 1.0 52 2-53 62-124 (171)
18 1r2d_A Apoptosis regulator BCL 58.9 5 0.00017 28.9 2.1 51 2-52 89-150 (218)
19 4aq3_A Apoptosis regulator BCL 56.6 5.2 0.00018 27.5 1.8 51 2-52 58-119 (169)
20 2nl9_A Fusion protein consisti 56.4 4.1 0.00014 27.5 1.3 51 2-52 42-104 (157)
21 4hw4_A Induced myeloid leukemi 50.9 5.9 0.0002 26.9 1.3 52 2-53 42-105 (157)
22 3ilc_A BCL-2-like protein 1; a 45.6 9.5 0.00033 27.0 1.8 51 2-52 90-151 (197)
23 3pk1_A Induced myeloid leukemi 44.3 10 0.00035 26.6 1.8 53 2-54 75-139 (189)
24 1k3k_A Functional anti-apoptot 42.3 10 0.00035 25.8 1.5 50 3-52 36-97 (158)
25 4b4s_A BCL-2-like protein 10; 40.9 15 0.00051 25.4 2.1 54 2-55 40-102 (175)
26 2y6w_A BCL-2-like protein 2; a 40.0 6.3 0.00021 27.2 0.1 50 3-52 59-119 (177)
27 1nrp_R Receptor based peptide 37.7 11 0.00039 17.7 0.8 15 10-24 6-21 (26)
28 3e98_A GAF domain of unknown f 37.2 7.1 0.00024 28.4 0.0 16 5-20 34-49 (252)
29 4a5u_A RNA replicase polyprote 35.7 68 0.0023 22.0 4.8 49 43-99 106-156 (160)
30 3hki_C Proteinase-activated re 34.9 8.4 0.00029 17.7 0.0 14 11-24 4-17 (21)
31 4er8_A Tnparep for protein; pr 31.8 36 0.0012 22.8 2.9 38 5-42 110-153 (165)
32 3qq6_A HTH-type transcriptiona 30.8 49 0.0017 18.7 3.1 31 27-57 37-68 (78)
33 2j85_A STIV B116; viral protei 28.1 55 0.0019 21.4 3.1 34 24-57 27-67 (122)
34 2x4i_A CAG38848, uncharacteriz 28.0 79 0.0027 20.4 3.9 32 25-57 28-63 (114)
35 3qwg_A ESX-1 secretion-associa 27.9 45 0.0015 21.2 2.7 34 27-60 43-77 (123)
36 2a5y_A Apoptosis regulator CED 27.8 23 0.00077 25.1 1.3 51 3-53 69-135 (204)
37 3skq_A Mitochondrial distribut 27.7 36 0.0012 25.0 2.4 56 2-57 26-94 (249)
38 3s8q_A R-M controller protein; 27.5 60 0.002 18.1 3.1 54 3-57 8-68 (82)
39 2rms_B MSIN3A-binding protein; 27.4 36 0.0012 19.3 1.9 18 37-54 2-19 (61)
40 1ew4_A CYAY protein; friedreic 27.3 72 0.0025 20.0 3.6 17 81-97 57-74 (106)
41 2pju_A Propionate catabolism o 27.2 1E+02 0.0036 21.7 4.8 56 5-62 71-138 (225)
42 2k3u_B C5AR(P7-28S) peptide, c 26.8 17 0.00058 17.0 0.3 9 90-98 5-13 (26)
43 1y7y_A C.AHDI; helix-turn-heli 26.5 70 0.0024 17.2 3.1 30 27-56 40-69 (74)
44 2ewt_A BLDD, putative DNA-bind 26.2 60 0.0021 17.4 2.8 29 28-56 38-66 (71)
45 2wh6_A Early antigen protein R 25.8 31 0.0011 23.9 1.7 50 4-53 64-126 (173)
46 3g5g_A Regulatory protein; tra 25.1 67 0.0023 19.2 3.1 55 2-57 24-85 (99)
47 3b7h_A Prophage LP1 protein 11 25.0 81 0.0028 17.1 3.3 30 28-57 35-65 (78)
48 2xi8_A Putative transcription 25.0 81 0.0028 16.4 3.2 30 28-57 29-58 (66)
49 2r1j_L Repressor protein C2; p 25.0 72 0.0025 16.7 3.0 29 28-56 33-61 (68)
50 3bs3_A Putative DNA-binding pr 24.3 89 0.003 16.8 3.4 29 29-57 39-67 (76)
51 1adr_A P22 C2 repressor; trans 24.1 85 0.0029 16.9 3.2 30 28-57 33-62 (76)
52 3sk9_A Putative uncharacterize 23.8 37 0.0013 24.7 1.9 26 6-32 207-233 (265)
53 3omt_A Uncharacterized protein 23.7 93 0.0032 16.8 3.4 28 29-56 37-64 (73)
54 2k0n_A Mediator of RNA polymer 23.2 14 0.00049 22.5 -0.4 29 7-35 36-67 (85)
55 2kua_A BCL-2-like protein 10; 22.7 34 0.0012 23.3 1.4 54 2-55 46-108 (170)
56 2k9q_A Uncharacterized protein 22.7 69 0.0023 17.7 2.6 30 28-57 30-59 (77)
57 3r1f_A ESX-1 secretion-associa 22.6 63 0.0022 20.8 2.7 33 27-59 45-78 (135)
58 2b5a_A C.BCLI; helix-turn-heli 22.6 87 0.003 16.9 3.1 30 27-56 37-66 (77)
59 2w6k_A COBE; biosynthetic prot 21.9 52 0.0018 21.8 2.2 25 37-61 52-76 (145)
60 1ohu_A Apoptosis regulator CED 21.7 21 0.00072 24.6 0.2 51 3-53 49-115 (175)
61 2hh8_A Hypothetical protein YD 21.6 26 0.0009 23.7 0.7 14 25-38 92-105 (149)
62 2ofy_A Putative XRE-family tra 21.5 91 0.0031 17.5 3.1 31 27-57 41-72 (86)
63 3lfp_A CSP231I C protein; tran 21.3 71 0.0024 18.7 2.6 28 30-57 35-62 (98)
64 2wiu_B HTH-type transcriptiona 20.9 98 0.0034 17.3 3.1 21 41-61 53-73 (88)
65 3f6w_A XRE-family like protein 20.8 1.1E+02 0.0037 16.9 3.3 30 28-57 42-71 (83)
66 3t76_A VANU, transcriptional r 20.7 1.1E+02 0.0037 18.1 3.3 28 28-56 52-79 (88)
67 2kpj_A SOS-response transcript 20.6 1.1E+02 0.0037 17.7 3.3 31 28-58 37-67 (94)
68 3lu9_C Proteinase-activated re 20.3 22 0.00076 16.9 0.0 11 12-22 14-24 (25)
No 1
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Probab=99.97 E-value=2.3e-31 Score=191.67 Aligned_cols=97 Identities=22% Similarity=0.354 Sum_probs=66.3
Q ss_pred hHHHHHHHHHhhCccccccccccCHHHHHHHhcCCCCcCChHHHHHHHHhhCCCEEEEEecCCCCCceeeeecCCCCCCC
Q 033766 2 MLLGQVADEFLLRRAETEWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTSGSLKNLSEYGQEYGKE 81 (112)
Q Consensus 2 ~lR~~~~~yi~~~~~~fe~fv~~~~~~Y~~~m~~~~~WGg~iEl~Als~~~~~~I~V~~~~~~~~~~~~i~~~g~e~~~~ 81 (112)
+||+.||+||++|+++|+|||+++|++||++|+++++|||++||+|||++|+++|.|++.+ +.++.+. .|.+....
T Consensus 88 ~LR~~vv~yi~~n~d~f~~Fv~~~~e~Y~~~m~~~~~WGg~iEL~AlS~~~~v~I~V~~~~---~~~i~i~-~g~~~~~~ 163 (185)
T 3pfy_A 88 VVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYS---TEPINTF-HGIHQNED 163 (185)
T ss_dssp HHHHHHHHHHHHTHHHHTTCC-----------------CCHHHHHHHHHHHTSCEEEESSC---SSCSEEE-CTTSCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhCCCccchHHHHHHHHHhhCCcEEEEECC---CCCeEEe-cCccCCCC
Confidence 6999999999999999999999999999999999999999999999999999999999976 2333331 24444456
Q ss_pred CeEEEEECCCCcccccccCCC
Q 033766 82 NPIRVLYHGYGHYDLLRGHDA 102 (112)
Q Consensus 82 ~~i~L~Y~~~gHYdsv~~~~~ 102 (112)
++|+|+||+.+|||||+++..
T Consensus 164 ~~I~L~Y~~~~HYnSv~~p~~ 184 (185)
T 3pfy_A 164 EPIRVSYHRNIHYNSVVNPNK 184 (185)
T ss_dssp SCEEEEEETTTEEEEEECC--
T ss_pred CEEEEEECCCCCcccccCCCC
Confidence 899999998889999998753
No 2
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=99.96 E-value=7.3e-29 Score=181.76 Aligned_cols=91 Identities=25% Similarity=0.343 Sum_probs=80.5
Q ss_pred hHHHHHHHHHhhCccccc-cccccCHHHHHHHhcCCCCcCChHHHHHHHHhhCCCEEEEEecCCCCCceeeeecCCCCCC
Q 033766 2 MLLGQVADEFLLRRAETE-WFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTSGSLKNLSEYGQEYGK 80 (112)
Q Consensus 2 ~lR~~~~~yi~~~~~~fe-~fv~~~~~~Y~~~m~~~~~WGg~iEl~Als~~~~~~I~V~~~~~~~~~~~~i~~~g~e~~~ 80 (112)
+||+.||+||++|+++|. +|++++|++||++|+++++|||++||+|||++|+++|.|++.+ ++ + +..||++. .
T Consensus 48 ~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~~~~~WGg~iEL~Als~~~~~~I~V~~~~--~~-~--~~~~~~~~-~ 121 (212)
T 3by4_A 48 DLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGIISDALAVAIYVVDID--AV-K--IEKFNEDK-F 121 (212)
T ss_dssp HHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTSTTSCCCHHHHHHHHHHHTCEEEEEETT--TT-E--EEEESTTT-C
T ss_pred HHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhcCCCEEccHHHHHHHHHHHCCCEEEEECC--CC-C--eEEeCCCC-C
Confidence 699999999999999995 7778899999999999999999999999999999999999976 22 2 34588775 4
Q ss_pred CCeEEEEECCCCccccccc
Q 033766 81 ENPIRVLYHGYGHYDLLRG 99 (112)
Q Consensus 81 ~~~i~L~Y~~~gHYdsv~~ 99 (112)
.++|+|+|++ +|||||+.
T Consensus 122 ~~~I~L~Y~g-~HYdsl~~ 139 (212)
T 3by4_A 122 DNYILILFNG-IHYDSLTM 139 (212)
T ss_dssp SEEEEEEECS-SCEEEEEE
T ss_pred CCeEEEEEcC-CcceEEec
Confidence 6789999985 59999987
No 3
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=99.95 E-value=8.1e-28 Score=173.11 Aligned_cols=100 Identities=15% Similarity=0.256 Sum_probs=84.1
Q ss_pred hHHHHHHHHHhhCccccccccccCHHHHHHHhcCCCCcCChHHHHHHHHhhCCCEEEEEecCCCCCceeeeecCCCCCCC
Q 033766 2 MLLGQVADEFLLRRAETEWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTSGSLKNLSEYGQEYGKE 81 (112)
Q Consensus 2 ~lR~~~~~yi~~~~~~fe~fv~~~~~~Y~~~m~~~~~WGg~iEl~Als~~~~~~I~V~~~~~~~~~~~~i~~~g~e~~~~ 81 (112)
+||+.|++||++|++. .+++++|++||++|+++++|||++||+|||++|+++|.|++.+.++ ++..+..||++.. .
T Consensus 66 ~LR~~~~~yi~~~~~~--~~~~~~~~~Y~~~m~~~~~WGg~iEL~Als~~~~v~I~V~~~d~~~-~~~~i~~f~~~~~-~ 141 (185)
T 3phx_A 66 LTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASD-EVEAGIKFGDGDV-F 141 (185)
T ss_dssp HHHHHHHHHGGGCTTH--HHHCCCHHHHHHHHTSTTCCCBHHHHHHHHHHHCCCEEEEEC--CC-BCCEEEEESSCCT-T
T ss_pred HHHHHHHHHHHhChHh--hhcCCCHHHHHHHhhCCCccCcHHHHHHHHHHHCCcEEEEEecCCC-CceEEEEcCCCCC-C
Confidence 6999999999999998 4678899999999999999999999999999999999999987542 2344557887653 6
Q ss_pred CeEEEEECCCCcccccccCCCCch
Q 033766 82 NPIRVLYHGYGHYDLLRGHDATTQ 105 (112)
Q Consensus 82 ~~i~L~Y~~~gHYdsv~~~~~~~~ 105 (112)
++|+|+|++.+|||||++..++.+
T Consensus 142 ~~I~L~Y~g~~HYdsl~~~~~~~~ 165 (185)
T 3phx_A 142 TAVNLLHSGQTHFDALRILPQFET 165 (185)
T ss_dssp TSEEEEEETTTEEEEEEECGGGC-
T ss_pred CEEEEEECCCcCchhceECCCCCC
Confidence 889999998679999998875544
No 4
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=99.94 E-value=2.9e-27 Score=174.09 Aligned_cols=99 Identities=15% Similarity=0.257 Sum_probs=85.6
Q ss_pred hHHHHHHHHHhhCccccccccccCHHHHHHHhcCCCCcCChHHHHHHHHhhCCCEEEEEecCCCCCceeeeecCCCCCCC
Q 033766 2 MLLGQVADEFLLRRAETEWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTSGSLKNLSEYGQEYGKE 81 (112)
Q Consensus 2 ~lR~~~~~yi~~~~~~fe~fv~~~~~~Y~~~m~~~~~WGg~iEl~Als~~~~~~I~V~~~~~~~~~~~~i~~~g~e~~~~ 81 (112)
+||+.|++||++|++. .+++++|++||++|+++++|||++||+|||++|+++|+|++.+.+ +++..+..||++.. .
T Consensus 66 ~LR~~va~yi~~n~d~--~~~~~~feeY~~~m~~~g~WGG~iEL~AlS~~~~v~I~V~~~d~~-g~~~~i~~fge~~~-~ 141 (219)
T 3phu_A 66 LTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAAS-DEVEAGIKFGDGDV-F 141 (219)
T ss_dssp HHHHHHHHHGGGCHHH--HHHCCCHHHHHHHHHSTTCCCCHHHHHHHHHHTTCCEEEEEESSS-SBEEEEEEESSCCT-T
T ss_pred HHHHHHHHHHHhChhh--hhcCCCHHHHHHHhcCCCccCCHHHHHHHHHHhCCCEEEEEecCC-CCceeEEEecCCCC-C
Confidence 6999999999999998 467889999999999999999999999999999999999998844 22444567887753 6
Q ss_pred CeEEEEECCCCcccccccCCCCc
Q 033766 82 NPIRVLYHGYGHYDLLRGHDATT 104 (112)
Q Consensus 82 ~~i~L~Y~~~gHYdsv~~~~~~~ 104 (112)
++|+|+|++.+|||||++..+..
T Consensus 142 ~~I~L~Y~g~~HYdSL~~~~d~~ 164 (219)
T 3phu_A 142 TAVNLLHSGQTHFDALRILPQFE 164 (219)
T ss_dssp TSEEEEEETTTEEEEEEECTTTC
T ss_pred CeEEEEECCCcCchhheECCCCC
Confidence 88999999867999999887543
No 5
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=99.92 E-value=2.2e-25 Score=165.31 Aligned_cols=95 Identities=20% Similarity=0.300 Sum_probs=80.8
Q ss_pred hHHHHHHHHHhhCcccccccccc--CHHHHHH-HhcCCCCcCChHHHHHHHHhhCCCEEEEEecCCCCCceeeeecCCCC
Q 033766 2 MLLGQVADEFLLRRAETEWFVEG--DFDAYVR-QMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTSGSLKNLSEYGQEY 78 (112)
Q Consensus 2 ~lR~~~~~yi~~~~~~fe~fv~~--~~~~Y~~-~m~~~~~WGg~iEl~Als~~~~~~I~V~~~~~~~~~~~~i~~~g~e~ 78 (112)
.||..+++||++|+++|+||+++ ++++||+ .++.+++||||+||+|||++|+++|.|++.+++.+..+....|+++
T Consensus 137 ~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~~~~~~v~~~~f~~~- 215 (234)
T 2zfy_A 137 YLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEG- 215 (234)
T ss_dssp HHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-CCSSCCEEEEESTT-
T ss_pred HHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEEEEcCCCCCCcccceeCCCC-
Confidence 69999999999999999999986 8999998 5888999999999999999999999999998664333444556553
Q ss_pred CCCCeEEEEECCCCccccccc
Q 033766 79 GKENPIRVLYHGYGHYDLLRG 99 (112)
Q Consensus 79 ~~~~~i~L~Y~~~gHYdsv~~ 99 (112)
..++|+|+|++ ||||+|++
T Consensus 216 -~~p~I~LlY~p-gHYdiLy~ 234 (234)
T 2zfy_A 216 -SEPKVYLLYRP-GHYDILYK 234 (234)
T ss_dssp -CCCSEEEEEET-TEEEEEEC
T ss_pred -CCCeEEEEECC-CCcccCCC
Confidence 35789999975 79999985
No 6
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=99.92 E-value=2.5e-25 Score=165.10 Aligned_cols=96 Identities=16% Similarity=0.215 Sum_probs=78.6
Q ss_pred hHHHHHHHHHhhCcccccccccc--CHHHHHH-HhcCCCCcCChHHHHHHHHhhCCCEEEEEecCCCCCceeeeecCCCC
Q 033766 2 MLLGQVADEFLLRRAETEWFVEG--DFDAYVR-QMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTSGSLKNLSEYGQEY 78 (112)
Q Consensus 2 ~lR~~~~~yi~~~~~~fe~fv~~--~~~~Y~~-~m~~~~~WGg~iEl~Als~~~~~~I~V~~~~~~~~~~~~i~~~g~e~ 78 (112)
.||..++.||++|+++|+||+++ +|++||+ .++.+++||||+||+|||++|+++|.|++.+++.+ .+..+.|.++
T Consensus 134 ~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~~-~~~~~~~~~~- 211 (234)
T 1tff_A 134 FLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDT-ALNHHVFPEA- 211 (234)
T ss_dssp HHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC--------CCCCCCC-
T ss_pred HHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCCC-ccccccCCCC-
Confidence 68999999999999999999986 8999999 68899999999999999999999999999985531 1222334432
Q ss_pred CCCCeEEEEECCCCcccccccCC
Q 033766 79 GKENPIRVLYHGYGHYDLLRGHD 101 (112)
Q Consensus 79 ~~~~~i~L~Y~~~gHYdsv~~~~ 101 (112)
..+.|+|+|++ ||||+|++.+
T Consensus 212 -~~~~I~LlY~p-gHYdily~~~ 232 (234)
T 1tff_A 212 -ATPSVYLLYKT-SHYNILYAAD 232 (234)
T ss_dssp -SSCSEEEEEET-TEEEEEEECC
T ss_pred -CCCeEEEEECC-CCceecccCC
Confidence 35779999975 6999999875
No 7
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=99.91 E-value=6.2e-25 Score=166.67 Aligned_cols=107 Identities=15% Similarity=0.170 Sum_probs=83.4
Q ss_pred ChHHHHHHHHHhhCcccccccccc--CHHHHHH-HhcCCCCcCChHHHHHHHHhhCCCEEEEEecCCCCCceeeee-cCC
Q 033766 1 MMLLGQVADEFLLRRAETEWFVEG--DFDAYVR-QMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTSGSLKNLSE-YGQ 76 (112)
Q Consensus 1 m~lR~~~~~yi~~~~~~fe~fv~~--~~~~Y~~-~m~~~~~WGg~iEl~Als~~~~~~I~V~~~~~~~~~~~~i~~-~g~ 76 (112)
+.||..++.||++|+++|+||+++ ++++||+ .|+..++||||+||+|||++|+++|.|.+++++.|..+..+. |.+
T Consensus 171 ~~LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~fp~ 250 (284)
T 4dhi_B 171 MFFRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDIPS 250 (284)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEESC
T ss_pred HHHHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccCCC
Confidence 369999999999999999999985 8999999 799999999999999999999999999999876554333334 522
Q ss_pred CC-CCCCeEEEEECCCCcccccccCCCCchhhh
Q 033766 77 EY-GKENPIRVLYHGYGHYDLLRGHDATTQSRL 108 (112)
Q Consensus 77 e~-~~~~~i~L~Y~~~gHYdsv~~~~~~~~~~~ 108 (112)
+. ...+.|+|+|.+ ||||.|+++..+..|+.
T Consensus 251 ~~~~~~p~I~LLYrp-gHYDILY~~~p~~~~~~ 282 (284)
T 4dhi_B 251 DDQQIAPEITLLYRP-GHYDVIYKKDSTEASEI 282 (284)
T ss_dssp CCSCCCCSEEEEEET-TEEEEEEECC-------
T ss_pred CCCCCCCEEEEeecC-CCccccccCCCCchhhc
Confidence 21 123669999976 79999999987777764
No 8
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=99.85 E-value=1.9e-21 Score=153.39 Aligned_cols=96 Identities=20% Similarity=0.297 Sum_probs=80.9
Q ss_pred ChHHHHHHHHHhhCcccccccccc--CHHHHHH-HhcCCCCcCChHHHHHHHHhhCCCEEEEEecCCCCCceeeeecCCC
Q 033766 1 MMLLGQVADEFLLRRAETEWFVEG--DFDAYVR-QMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTSGSLKNLSEYGQE 77 (112)
Q Consensus 1 m~lR~~~~~yi~~~~~~fe~fv~~--~~~~Y~~-~m~~~~~WGg~iEl~Als~~~~~~I~V~~~~~~~~~~~~i~~~g~e 77 (112)
+.||..++.||+.|+++|+||+++ ++++||+ .|...++||||+||+|||++|+++|.|++.+++.+..+..+.+.++
T Consensus 301 ~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~~~~ 380 (399)
T 4ddg_A 301 VYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEG 380 (399)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEETTTT
T ss_pred HHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeCCCC
Confidence 369999999999999999999986 7999999 7999999999999999999999999999988754433333445332
Q ss_pred CCCCCeEEEEECCCCccccccc
Q 033766 78 YGKENPIRVLYHGYGHYDLLRG 99 (112)
Q Consensus 78 ~~~~~~i~L~Y~~~gHYdsv~~ 99 (112)
..+.|+|+|. .||||.|++
T Consensus 381 --~~~~I~LLYr-PgHYDiLY~ 399 (399)
T 4ddg_A 381 --SEPKVYLLYR-PGHYDILYK 399 (399)
T ss_dssp --CCCCCEEEEE-TBEEEEEEC
T ss_pred --CCCEEEEEEc-CCccccCCC
Confidence 3577999995 579999985
No 9
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A
Probab=94.52 E-value=0.092 Score=41.02 Aligned_cols=60 Identities=23% Similarity=0.283 Sum_probs=38.4
Q ss_pred hHHHHHHHHhhCCCEEEEEec--CC--CCCceeeeecCC---------CCCCCCeEEEEECCCCcccccccCCC
Q 033766 42 EPELLMSSHVLKMPITVYMRD--KT--SGSLKNLSEYGQ---------EYGKENPIRVLYHGYGHYDLLRGHDA 102 (112)
Q Consensus 42 ~iEl~Als~~~~~~I~V~~~~--~~--~~~~~~i~~~g~---------e~~~~~~i~L~Y~~~gHYdsv~~~~~ 102 (112)
++.+-+||.++++||+|+... ++ .|...--..|+. +.=...||.|+|.+ |||.+|.....
T Consensus 213 eiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~rsPI~LgY~s-~HFsaLV~me~ 285 (390)
T 3dkb_A 213 EIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPIVLGYDS-HHFVPLVTLKD 285 (390)
T ss_dssp HHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCSSCEEEEECS-SCEEEEEEBCS
T ss_pred HHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccCCceEEEecc-Cceeeeeeccc
Confidence 788999999999999999632 11 121110012221 11124689999987 69999998754
No 10
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=88.65 E-value=1.7 Score=34.60 Aligned_cols=76 Identities=22% Similarity=0.388 Sum_probs=50.3
Q ss_pred CHHHHHHHhcCCCCcCChHHHHHHHHhhCCCEEEEEecCC---CCC-ceeeeecCC---------CCCCCCeEEEEECCC
Q 033766 25 DFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKT---SGS-LKNLSEYGQ---------EYGKENPIRVLYHGY 91 (112)
Q Consensus 25 ~~~~Y~~~m~~~~~WGg~iEl~Als~~~~~~I~V~~~~~~---~~~-~~~i~~~g~---------e~~~~~~i~L~Y~~~ 91 (112)
.|+.-+.....||+==-++.+-+||+++++||+|+...-- .|. +-.+ .|+. +.=...||.|+|.+
T Consensus 263 EW~~iv~~As~Pg~sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi-~f~GIYLPLlwpp~~C~rsPIvLgY~~- 340 (454)
T 3zrh_A 263 DWAFILSLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYT-RFQGVYLPLLWEQSFCWKSPIALGYTR- 340 (454)
T ss_dssp HHHHHHHHTTSTTCCCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCC-CCCEEECCTTSCGGGSCSCCEEEEEET-
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCc-ccceeeccCcCCHHHhcCCceEEEecc-
Confidence 5777777777787656689999999999999999974211 010 0001 1221 11024689999987
Q ss_pred CcccccccCCC
Q 033766 92 GHYDLLRGHDA 102 (112)
Q Consensus 92 gHYdsv~~~~~ 102 (112)
|||.++.....
T Consensus 341 gHFsaLV~~~~ 351 (454)
T 3zrh_A 341 GHFSALVAMEN 351 (454)
T ss_dssp TEEEEEEEBCC
T ss_pred cceeeeeeccc
Confidence 59999987754
No 11
>2w3l_A BCL2-XL, apoptosis regulator BCL-2; HET: DRO; 2.10A {Homo sapiens} PDB: 2o2f_A*
Probab=68.29 E-value=2.8 Score=27.86 Aligned_cols=51 Identities=18% Similarity=0.179 Sum_probs=39.0
Q ss_pred hHHHHHHHHHhhCccccccccc----------cCHHHHHHHhcCCC-CcCChHHHHHHHHhh
Q 033766 2 MLLGQVADEFLLRRAETEWFVE----------GDFDAYVRQMRQPH-SWGGEPELLMSSHVL 52 (112)
Q Consensus 2 ~lR~~~~~yi~~~~~~fe~fv~----------~~~~~Y~~~m~~~~-~WGg~iEl~Als~~~ 52 (112)
.||..+-+..++|+..|...+. +.|.+=++.+-++| +||--+-|.|++-.+
T Consensus 34 ~Lr~~gdele~~~~~~f~~~~~~l~i~~~~~~~~f~~Va~elF~dGinWGRIValf~F~g~l 95 (144)
T 2w3l_A 34 TLREAGDDFSRRYRRDFAEMSSGLHLTPFTARGRFATVVEELFRDGVNWGRIVAFFEFGGVM 95 (144)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHTTCCCCTTTHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHcCCCCccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 3788888888889888865553 24666667777777 899999999988876
No 12
>2vof_A BCL-2-related protein A1; BH3, apoptosis, Pro-surviVal, mitochondrion, protein- complex; 1.8A {Mus musculus} PDB: 2vog_A 2voh_A* 2voi_A 3i1h_A 3mqp_A 2vm6_A
Probab=66.80 E-value=2.7 Score=28.44 Aligned_cols=51 Identities=12% Similarity=0.142 Sum_probs=40.4
Q ss_pred hHHHHHHHHHhhCcccccccccc-----------CHHHHHHHhcCCC--CcCChHHHHHHHHhh
Q 033766 2 MLLGQVADEFLLRRAETEWFVEG-----------DFDAYVRQMRQPH--SWGGEPELLMSSHVL 52 (112)
Q Consensus 2 ~lR~~~~~yi~~~~~~fe~fv~~-----------~~~~Y~~~m~~~~--~WGg~iEl~Als~~~ 52 (112)
.||..+.+..++|++.|.+++.. .|.+-.+.+-++| +||--+-|.|++-.+
T Consensus 41 ~Lr~~~~ele~~~~~~f~~~~~~l~i~~~~~a~~~f~~Va~elF~dg~inWGRIVal~~F~g~l 104 (157)
T 2vof_A 41 VLQRVAFSVQKEVEKNLKSYLDDFHVESIDTARIIFNQVMEKEFEDGIINWGRIVTIFAFGGVL 104 (157)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHTTCCCCSHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 37888888888999888776641 2666678888898 899999999988776
No 13
>2jn4_A Hypothetical protein FIXU, NIFT; structural genomics, PSI-2, protein structure initiative, northeast ST genomics consortium, NESG; NMR {Rhodopseudomonas palustris} SCOP: b.173.1.1
Probab=64.00 E-value=0.047 Score=34.22 Aligned_cols=33 Identities=21% Similarity=0.480 Sum_probs=22.8
Q ss_pred hhCccccccccc-cCHHHHHHHhcCCCCcCChHH
Q 033766 12 LLRRAETEWFVE-GDFDAYVRQMRQPHSWGGEPE 44 (112)
Q Consensus 12 ~~~~~~fe~fv~-~~~~~Y~~~m~~~~~WGg~iE 44 (112)
+++.+-+..||. .|+|+=+-.|.+++.|||.+.
T Consensus 27 R~~~~GLs~YVpKKDLEE~VVs~E~~~~WGG~vt 60 (87)
T 2jn4_A 27 RKTATGHSAYVAKKDLEELIVEMENPALWGGKVT 60 (87)
T ss_dssp EECSSCEEEEETTTTEEEEEEEESSSSSCSSEEE
T ss_pred EeCCCceEEEEeCCcchhheeeeecccccCcEEE
Confidence 344444566666 377777777889999999653
No 14
>1o0l_A Apoptosis regulator BCL-W; helical bundle, binding groove, BH3; NMR {Homo sapiens} SCOP: f.1.4.1
Probab=62.64 E-value=4.3 Score=28.28 Aligned_cols=51 Identities=12% Similarity=0.057 Sum_probs=39.9
Q ss_pred HHHHHHHHHhhCccccccccc----------cCHHHHHHHhcCCC-CcCChHHHHHHHHhhC
Q 033766 3 LLGQVADEFLLRRAETEWFVE----------GDFDAYVRQMRQPH-SWGGEPELLMSSHVLK 53 (112)
Q Consensus 3 lR~~~~~yi~~~~~~fe~fv~----------~~~~~Y~~~m~~~~-~WGg~iEl~Als~~~~ 53 (112)
||..+-+..++|++.|..++. +.|.+-.+.+-++| +||--+-|.|++-.+-
T Consensus 51 Lr~~gdele~~~~~~f~~~~~~l~i~~~~~~~~F~~Va~elF~dGinWGRIValfaF~g~La 112 (188)
T 1o0l_A 51 MRAAGDEFETRFRRTFSDLAAQLHVTPGSAQQRFTQVSDELFQGGPNWGRLVAFFVFGAALC 112 (188)
T ss_dssp HHHHHHHHHHHCSCSHHHHHHHTTTCSSTTHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 788777888889999977764 24777777888788 8999999998877663
No 15
>3sp7_A BCL-2-like protein 1; apoptosis regulator-inhibitor complex; HET: 03B; 1.40A {Homo sapiens} PDB: 2lp8_A* 2lpc_A 1ysg_A* 1ysi_A* 1ysn_A* 2o1y_A* 2yxj_A* 3pl7_A 3qkd_A* 1g5j_A 4ehr_A* 3spf_A* 2pon_B 3r85_A 2p1l_A 4a1u_A* 2yj1_A 2yq7_A 2yq6_A 3fdm_A ...
Probab=61.57 E-value=6.8 Score=27.02 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=41.5
Q ss_pred hHHHHHHHHHhhCccccccccc----------cCHHHHHHHhcCCC-CcCChHHHHHHHHhhC
Q 033766 2 MLLGQVADEFLLRRAETEWFVE----------GDFDAYVRQMRQPH-SWGGEPELLMSSHVLK 53 (112)
Q Consensus 2 ~lR~~~~~yi~~~~~~fe~fv~----------~~~~~Y~~~m~~~~-~WGg~iEl~Als~~~~ 53 (112)
.||...-+.-++|+..|...+. ..|.+-++.|-++| .||-=+-|-|++-.+-
T Consensus 52 ~Lr~~gdelE~~~~~~f~~~~~qL~it~~~a~~~F~~Va~elF~dGinWGRIVaLfaF~g~la 114 (172)
T 3sp7_A 52 ALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALC 114 (172)
T ss_dssp HHHHHHHHHHHHHGGGCSCHHHHTTCCTTCCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 4788888888899999987764 25777777778888 8999999999886553
No 16
>2xa0_A BCL-2, apoptosis regulator BCL-2; cell death; 2.70A {Homo sapiens} PDB: 1gjh_A 1ysw_A* 2o21_A* 2o22_A* 1g5m_A
Probab=59.48 E-value=7.1 Score=27.85 Aligned_cols=51 Identities=18% Similarity=0.178 Sum_probs=40.4
Q ss_pred hHHHHHHHHHhhCccccccccc----------cCHHHHHHHhcCCC-CcCChHHHHHHHHhh
Q 033766 2 MLLGQVADEFLLRRAETEWFVE----------GDFDAYVRQMRQPH-SWGGEPELLMSSHVL 52 (112)
Q Consensus 2 ~lR~~~~~yi~~~~~~fe~fv~----------~~~~~Y~~~m~~~~-~WGg~iEl~Als~~~ 52 (112)
.||...-+..++|+..|..++. +.|.+-++.+-++| +||--+-|.|++-.+
T Consensus 96 ~Lr~lgdEle~~~~~~F~~m~~qL~it~~~a~~~F~~Va~elF~DGiNWGRIVaLfaF~g~L 157 (207)
T 2xa0_A 96 TLRQAGDDFSRRYRRDFAEMSSQLHLTPFTARGRFATVVEELFRDGVNWGRIVAFFEFGGVM 157 (207)
T ss_dssp HHHHHHHHHHHHHHHHSCCGGGTCCCCTTTHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHhCCCcchHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 3788888888889999988775 24666677777777 899999999988776
No 17
>2ims_A Apoptosis regulator BAK; dimer; 1.48A {Homo sapiens} PDB: 2imt_A 2jcn_A 2yv6_A 3qbr_B* 2xpx_B 2jby_B 2voh_B*
Probab=59.14 E-value=3.1 Score=28.50 Aligned_cols=52 Identities=17% Similarity=0.074 Sum_probs=40.4
Q ss_pred hHHHHHHHHHhhCccccccccc----------cCHHHHHHHhcCCC-CcCChHHHHHHHHhhC
Q 033766 2 MLLGQVADEFLLRRAETEWFVE----------GDFDAYVRQMRQPH-SWGGEPELLMSSHVLK 53 (112)
Q Consensus 2 ~lR~~~~~yi~~~~~~fe~fv~----------~~~~~Y~~~m~~~~-~WGg~iEl~Als~~~~ 53 (112)
.||..+-+..++|+..|..++. +.|.+=++.+-++| +||--+-|.|++-.+-
T Consensus 62 ~Lr~~gdele~~~~~~f~~m~~~l~~~~~~~~~~f~~Va~elF~dGinWGRIVal~~F~g~la 124 (171)
T 2ims_A 62 QLAIIGDDINRRYDSEFQTMLQHLQPTAENAYEYFTKIATSLFESGINWGRVVALLGFGYRLA 124 (171)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHcCCCcccHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHH
Confidence 3777777888888888877764 24667777888888 8999999999887763
No 18
>1r2d_A Apoptosis regulator BCL-X; monomeric, alpha-helical; 1.95A {Homo sapiens} SCOP: f.1.4.1 PDB: 2b48_A 1r2i_A 1r2h_A 1r2g_A 1r2e_A 1bxl_A 1lxl_A 1maz_A 3cva_X 1ysg_A* 1ysi_A* 1ysn_A* 2o1y_A* 2yxj_A* 3pl7_A 3qkd_A* 1g5j_A 2lp8_A* 2lpc_A
Probab=58.93 E-value=5 Score=28.94 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=39.9
Q ss_pred hHHHHHHHHHhhCccccccccc----------cCHHHHHHHhcCCC-CcCChHHHHHHHHhh
Q 033766 2 MLLGQVADEFLLRRAETEWFVE----------GDFDAYVRQMRQPH-SWGGEPELLMSSHVL 52 (112)
Q Consensus 2 ~lR~~~~~yi~~~~~~fe~fv~----------~~~~~Y~~~m~~~~-~WGg~iEl~Als~~~ 52 (112)
.||+..-+..++|+..|..+.. +.|.+-.+.|-++| +||--+-|.|++-.+
T Consensus 89 ~Lr~lgdElE~~~~~~f~~m~~qL~it~~~a~~~F~~Va~elF~DGINWGRIVaLfaF~g~L 150 (218)
T 1r2d_A 89 ALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGAL 150 (218)
T ss_dssp HHHHHHHHHHHHCCSTTHHHHHHHCCCTTCCHHHHHHHHGGGGTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 4788888888899999988763 24666666677777 899999999988665
No 19
>4aq3_A Apoptosis regulator BCL-2, BCL-2-like protein 1; chimera; HET: 398; 2.40A {Homo sapiens} PDB: 1g5m_A 1gjh_A 1ysw_A* 2o21_A* 2o22_A*
Probab=56.56 E-value=5.2 Score=27.53 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=40.7
Q ss_pred hHHHHHHHHHhhCccccccccc----------cCHHHHHHHhcCCC-CcCChHHHHHHHHhh
Q 033766 2 MLLGQVADEFLLRRAETEWFVE----------GDFDAYVRQMRQPH-SWGGEPELLMSSHVL 52 (112)
Q Consensus 2 ~lR~~~~~yi~~~~~~fe~fv~----------~~~~~Y~~~m~~~~-~WGg~iEl~Als~~~ 52 (112)
.||...-+.-++|+..|...+. +.|.+-++.|-++| .||-=+-|-|++-.+
T Consensus 58 ~Lr~igdele~~~~~~f~~~~~~L~it~~~a~~~F~~Va~elF~dGiNWGRIVaLfaF~g~L 119 (169)
T 4aq3_A 58 ALRQAGDDFSRRYRGDFAEMSSQLHLTPFTARGRFATVVEELFRDGVNWGRIVAFFEFGGVM 119 (169)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHCCCCTTTHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 4788888888889998877653 25777778888888 899999999988655
No 20
>2nl9_A Fusion protein consisting of induced myeloid LEUK differentiation protein MCL-1 homolog...; apoptosis, MCL-1, BIM; HET: MSE; 1.55A {Rattus norvegicus} PDB: 2nla_A 3d7v_A 3io9_A 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 1wsx_A 2jm6_B 2roc_A 2rod_A 2kbw_A 3mk8_B
Probab=56.43 E-value=4.1 Score=27.46 Aligned_cols=51 Identities=8% Similarity=0.034 Sum_probs=40.8
Q ss_pred hHHHHHHHHHhhCccccccccc-------c---CHHHHHHHhcCCC--CcCChHHHHHHHHhh
Q 033766 2 MLLGQVADEFLLRRAETEWFVE-------G---DFDAYVRQMRQPH--SWGGEPELLMSSHVL 52 (112)
Q Consensus 2 ~lR~~~~~yi~~~~~~fe~fv~-------~---~~~~Y~~~m~~~~--~WGg~iEl~Als~~~ 52 (112)
.||+.+-+..++|+..|..++. . .|.+=++.+-++| .||-=+-|-|++-.+
T Consensus 42 ~Lr~i~dele~~~~~~f~~~~~~l~i~~~~~~~~f~~Va~elF~dGi~nWGRIValf~F~~~l 104 (157)
T 2nl9_A 42 TLRRVGDGVQRNHETAFQGMLRKLDIKNEDDVKSLSRVMIHVFSDGVTNWGRIVTLISFGAFV 104 (157)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHCCCSTTCCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Confidence 4788888899999998887664 1 3667778888888 599999999988765
No 21
>4hw4_A Induced myeloid leukemia cell differentiation Pro 1; anti-apoptotic protein, BH3 peptides, apoptosis; 1.53A {Homo sapiens} PDB: 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 2kbw_A 4hw3_A* 4hw2_A* 3d7v_A 3io9_A 2nl9_A* 2nla_A 4g35_A* 1wsx_A 2jm6_B 2roc_A 2rod_A 3mk8_B
Probab=50.85 E-value=5.9 Score=26.88 Aligned_cols=52 Identities=8% Similarity=0.024 Sum_probs=40.9
Q ss_pred hHHHHHHHHHhhCccccccccc----------cCHHHHHHHhcCCC--CcCChHHHHHHHHhhC
Q 033766 2 MLLGQVADEFLLRRAETEWFVE----------GDFDAYVRQMRQPH--SWGGEPELLMSSHVLK 53 (112)
Q Consensus 2 ~lR~~~~~yi~~~~~~fe~fv~----------~~~~~Y~~~m~~~~--~WGg~iEl~Als~~~~ 53 (112)
.||..+.+..++|+..|+..+. ..|.+-++.+-++| .||-=+-|-|++-.+-
T Consensus 42 ~Lr~vgdele~~~~~~f~~m~~~L~it~~~a~~~F~~Va~elF~dGi~NWGRIVaLfaFgg~la 105 (157)
T 4hw4_A 42 TLRRVGDGVQRNHETAFQGMLRKLDIKNEDDVKSLSRVMIHVFSDGVTNWGRIVTLISFGAFVA 105 (157)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHCCCSHHHHHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHH
Confidence 4788888888999998987665 14666777788888 7999999998776654
No 22
>3ilc_A BCL-2-like protein 1; apoptosis, BH3 domain, alternative splicing, cytoplasm, membrane, mitochondrion, transmembrane; 1.64A {Mus musculus} PDB: 3ihd_A 2bzw_A 1pq1_A 1pq0_A 3ihc_A 3iih_A 1af3_A 3ihf_A 3ilb_A 3iig_A 3ihe_A
Probab=45.63 E-value=9.5 Score=27.04 Aligned_cols=51 Identities=16% Similarity=0.153 Sum_probs=39.0
Q ss_pred hHHHHHHHHHhhCccccccccc----------cCHHHHHHHhcCCC-CcCChHHHHHHHHhh
Q 033766 2 MLLGQVADEFLLRRAETEWFVE----------GDFDAYVRQMRQPH-SWGGEPELLMSSHVL 52 (112)
Q Consensus 2 ~lR~~~~~yi~~~~~~fe~fv~----------~~~~~Y~~~m~~~~-~WGg~iEl~Als~~~ 52 (112)
.||...-+..++|+..|...+. ..|.+-++.|-++| .||-=+-|.+++-.+
T Consensus 90 ~Lr~lGdElE~~~~~~F~~m~~qL~it~~~a~~~F~~Va~elF~DGiNWGRIVaLfaFgg~L 151 (197)
T 3ilc_A 90 ALREAGDEFELRARRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGAL 151 (197)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHCCCTTCCHHHHHHHHGGGGTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHhCCCcchHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 4788888888889998876553 24666667777777 899999999888665
No 23
>3pk1_A Induced myeloid leukemia cell differentiation Pro 1; BCL-2 family fold, regulation of apoptosis, mitochondri apoptosis-apoptosis regulator complex; 2.49A {Homo sapiens}
Probab=44.28 E-value=10 Score=26.59 Aligned_cols=53 Identities=8% Similarity=0.014 Sum_probs=41.7
Q ss_pred hHHHHHHHHHhhCccccccccc----------cCHHHHHHHhcCCC--CcCChHHHHHHHHhhCC
Q 033766 2 MLLGQVADEFLLRRAETEWFVE----------GDFDAYVRQMRQPH--SWGGEPELLMSSHVLKM 54 (112)
Q Consensus 2 ~lR~~~~~yi~~~~~~fe~fv~----------~~~~~Y~~~m~~~~--~WGg~iEl~Als~~~~~ 54 (112)
.||..+.+..++|+..|+..+. ..|.+-++.+-++| .||-=+-|-|++-.+-+
T Consensus 75 ~Lr~vgdEle~~~~~~F~~m~~qL~it~~~a~~~F~~Va~elF~DGi~NWGRIVaLfaFgg~La~ 139 (189)
T 3pk1_A 75 TLRRVGDGVQRNHETAFQGMLRKLDIKNEDDVKSLSRVMIHVFSDGVTNWGRIVTLISFGAFVAK 139 (189)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTCCSTTCCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHH
Confidence 4788888888888988887664 24777788888898 79999999988766543
No 24
>1k3k_A Functional anti-apoptotic factor VBCL-2 homolog; solution structure, apoptosis; NMR {Human herpesvirus 8} SCOP: f.1.4.1
Probab=42.28 E-value=10 Score=25.76 Aligned_cols=50 Identities=10% Similarity=0.121 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhCccccccccc----------cCHHHHHHHhcCCC--CcCChHHHHHHHHhh
Q 033766 3 LLGQVADEFLLRRAETEWFVE----------GDFDAYVRQMRQPH--SWGGEPELLMSSHVL 52 (112)
Q Consensus 3 lR~~~~~yi~~~~~~fe~fv~----------~~~~~Y~~~m~~~~--~WGg~iEl~Als~~~ 52 (112)
+++.+-+.+++|+..|+.++. +.|.+-.+.+-++| .||-=+-|-|++-.+
T Consensus 36 ~k~~~~el~~~~~~~F~~m~~~l~i~~~~~~~~F~~Va~elF~DG~iNWGRIVaLfaF~g~l 97 (158)
T 1k3k_A 36 IKLYITGLMRDKESLFEAMLANVRFHSTTGIDQLGLSMLQVSGDGNMNWGRALAILTFGSFV 97 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHTHHHHHCSSCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 466677777888888888874 24556677788889 899999999988766
No 25
>4b4s_A BCL-2-like protein 10; apoptosis; HET: PG4; 1.90A {Homo sapiens}
Probab=40.91 E-value=15 Score=25.42 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=43.5
Q ss_pred hHHHHHHHHHhhCccccccccc------cCHHHHHHHhcCCC---CcCChHHHHHHHHhhCCC
Q 033766 2 MLLGQVADEFLLRRAETEWFVE------GDFDAYVRQMRQPH---SWGGEPELLMSSHVLKMP 55 (112)
Q Consensus 2 ~lR~~~~~yi~~~~~~fe~fv~------~~~~~Y~~~m~~~~---~WGg~iEl~Als~~~~~~ 55 (112)
.||..+.+.-++|+..|..+.. +.|.+-.+.+-++| .||-=+-|-|++-.+=+.
T Consensus 40 ~LR~va~ele~~~~~~f~~~~~~~~~a~~~f~~Va~~lF~dg~~inWGRIV~l~~F~g~la~~ 102 (175)
T 4b4s_A 40 VLRSAAARLRQIHRSFFSAYLGYPGNRFELVALMADSVLSDSPGPTWGRVVTLVTFAGTLLER 102 (175)
T ss_dssp HHHHHHHHHHHHTHHHHHTTTTCCSCHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4899999999999999987775 35777777787776 699999999988777544
No 26
>2y6w_A BCL-2-like protein 2; apoptosis; HET: PGE; 2.00A {Homo sapiens} PDB: 1mk3_A 1zy3_A
Probab=39.99 E-value=6.3 Score=27.21 Aligned_cols=50 Identities=12% Similarity=0.076 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhCccccccccc----------cCHHHHHHHhcCCC-CcCChHHHHHHHHhh
Q 033766 3 LLGQVADEFLLRRAETEWFVE----------GDFDAYVRQMRQPH-SWGGEPELLMSSHVL 52 (112)
Q Consensus 3 lR~~~~~yi~~~~~~fe~fv~----------~~~~~Y~~~m~~~~-~WGg~iEl~Als~~~ 52 (112)
||...-+..++|+..|..++. +.|.+-++.+-.+| +||--+-|.|++-.+
T Consensus 59 Lr~~gdele~~~~~~f~~~~~~l~i~~~~~~~~f~~Va~elF~dGinWGRIVaLfaF~g~L 119 (177)
T 2y6w_A 59 MRAAGDEFETRFRRTFSDLAAQLHVTPGSAQQRFTQVSDELFQGGPNWGRLVAFFVFGAAL 119 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 677777777788888876663 13556666666677 799999999888766
No 27
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=37.71 E-value=11 Score=17.66 Aligned_cols=15 Identities=27% Similarity=0.113 Sum_probs=10.1
Q ss_pred HHhhCcc-cccccccc
Q 033766 10 EFLLRRA-ETEWFVEG 24 (112)
Q Consensus 10 yi~~~~~-~fe~fv~~ 24 (112)
++.+|+. .|+||-++
T Consensus 6 fllrnpndkyepfwed 21 (26)
T 1nrp_R 6 FLLRNPNDKYEPFWED 21 (26)
T ss_pred hhhcCCCcccCccccc
Confidence 4555654 58999874
No 28
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=37.20 E-value=7.1 Score=28.39 Aligned_cols=16 Identities=19% Similarity=-0.197 Sum_probs=0.0
Q ss_pred HHHHHHHhhCcccccc
Q 033766 5 GQVADEFLLRRAETEW 20 (112)
Q Consensus 5 ~~~~~yi~~~~~~fe~ 20 (112)
..|++|+++|||+|.-
T Consensus 34 ~~V~~yL~~~PdFf~~ 49 (252)
T 3e98_A 34 EQVAAYLSQHPEFFVE 49 (252)
T ss_dssp ----------------
T ss_pred HHHHHHHHhCCHHHhh
Confidence 3689999999999863
No 29
>4a5u_A RNA replicase polyprotein; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Turnip yellow mosaic virus}
Probab=35.72 E-value=68 Score=21.95 Aligned_cols=49 Identities=16% Similarity=0.179 Sum_probs=35.0
Q ss_pred HHHHHHHHhhCCCEEEEEecCCCCCceeeeecCCCCCCCCeEEEEECC--CCccccccc
Q 033766 43 PELLMSSHVLKMPITVYMRDKTSGSLKNLSEYGQEYGKENPIRVLYHG--YGHYDLLRG 99 (112)
Q Consensus 43 iEl~Als~~~~~~I~V~~~~~~~~~~~~i~~~g~e~~~~~~i~L~Y~~--~gHYdsv~~ 99 (112)
-.+.|||..|+....|+... .. ..||-..+ ...+.|.|.. .|||.....
T Consensus 106 DhltaLa~~~~~~c~~hs~~----~~---~~~Gi~~a-s~~~~I~ht~G~P~HFs~~~~ 156 (160)
T 4a5u_A 106 EHLTALAHLYNFQATVYSDR----GP---ILFGPSDT-IKRIDITHTTGPPSHFSPGKR 156 (160)
T ss_dssp HHHHHHHHHHTEEEEEEETT----EE---EEESCSSC-SEEEEEEEECSSSCEEEESCC
T ss_pred HHHHHHHHHHheEEEEEcCC----ce---EEeecCCC-ceEEEEEeCCCCCCCccCCcc
Confidence 45789999999999998754 22 35887643 4578888854 369986644
No 30
>3hki_C Proteinase-activated receptor 1; serine protease, acute phase, blood coagulation, cleavage on basic residues, disulfide bond; HET: NAG; 2.20A {Homo sapiens} PDB: 3hkj_C*
Probab=34.91 E-value=8.4 Score=17.68 Aligned_cols=14 Identities=21% Similarity=0.048 Sum_probs=9.4
Q ss_pred HhhCcccccccccc
Q 033766 11 FLLRRAETEWFVEG 24 (112)
Q Consensus 11 i~~~~~~fe~fv~~ 24 (112)
+++-.+.||||.++
T Consensus 4 lrn~~~~fEp~~~d 17 (21)
T 3hki_C 4 LRNPNDKYEPFWED 17 (26)
T ss_pred eccCcccccccccc
Confidence 44555679999654
No 31
>4er8_A Tnparep for protein; protein-DNA complex, guide sequence, catalytic tyrosine, RNA recognition motif, transposase, HUH motif, DNA binding PROT complex; HET: DNA; 2.60A {Escherichia coli}
Probab=31.84 E-value=36 Score=22.80 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=26.5
Q ss_pred HHHHHHHhhCccc--cc----cccccCHHHHHHHhcCCCCcCCh
Q 033766 5 GQVADEFLLRRAE--TE----WFVEGDFDAYVRQMRQPHSWGGE 42 (112)
Q Consensus 5 ~~~~~yi~~~~~~--fe----~fv~~~~~~Y~~~m~~~~~WGg~ 42 (112)
..+++||..||-. .- .+---|+-.|+.+=.-|..|||.
T Consensus 110 ~~~~~YI~~NPVraglV~~~~dw~~SS~~~~v~~g~~p~dW~~~ 153 (165)
T 4er8_A 110 RHHVDYIYINPVKHGWVKQVSDWPFSTFHRDVARGLYPIDWAGD 153 (165)
T ss_dssp HHHHHHHHHHHHHTTSCSSGGGCCSBSHHHHHHTTSSCTTCCCC
T ss_pred HHHHHHHHhCHHhhcccCChhhCCcccHHHHHhCCCCCCCCCCC
Confidence 4678899888864 11 11124788999887778899885
No 32
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=30.78 E-value=49 Score=18.70 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=21.6
Q ss_pred HHHHHHhcCC-CCcCChHHHHHHHHhhCCCEE
Q 033766 27 DAYVRQMRQP-HSWGGEPELLMSSHVLKMPIT 57 (112)
Q Consensus 27 ~~Y~~~m~~~-~~WGg~iEl~Als~~~~~~I~ 57 (112)
..++.++.+. ..--.--.|..+|++|++++.
T Consensus 37 ~~~is~~E~G~~~~p~~~~l~~ia~~l~v~~~ 68 (78)
T 3qq6_A 37 KSYLSSIERNLQTNPSIQFLEKVSAVLDVSVH 68 (78)
T ss_dssp HHHHHHHHTTSCCCCBHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHCcCHH
Confidence 3455666654 345566788899999999864
No 33
>2j85_A STIV B116; viral protein, archaeal virus, crenarchaeal virus, STI archaea, crenarchaea, sulfolobus turreted icosa virus; 2.39A {Sulfolobus turreted icosahedral virus} SCOP: d.321.1.1
Probab=28.11 E-value=55 Score=21.43 Aligned_cols=34 Identities=6% Similarity=0.182 Sum_probs=28.4
Q ss_pred cCHHHHHHHhc---CCCCc----CChHHHHHHHHhhCCCEE
Q 033766 24 GDFDAYVRQMR---QPHSW----GGEPELLMSSHVLKMPIT 57 (112)
Q Consensus 24 ~~~~~Y~~~m~---~~~~W----Gg~iEl~Als~~~~~~I~ 57 (112)
-+.++.|+.+. +++.| |=+-.+++++.+++++|-
T Consensus 27 I~~~Eake~l~~~~~~~~~vsaIGH~sTAqlls~Llg~~ip 67 (122)
T 2j85_A 27 LDEEDFCLKLELRLEDGTLINAIGHDSTINLVNTLCGTQLQ 67 (122)
T ss_dssp ECHHHHHHHHHHHHHTTCEEECCCCHHHHHHHHHHHCCCCC
T ss_pred cCHHHHHHHHhhhcccCceEEeeccHHHHHHHHHHhCCCcC
Confidence 38999999982 45555 888999999999999975
No 34
>2x4i_A CAG38848, uncharacterized protein 114; unknown function, DUF1874, archeal virus; 2.20A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=28.03 E-value=79 Score=20.41 Aligned_cols=32 Identities=6% Similarity=0.164 Sum_probs=27.4
Q ss_pred CHHHHHHHhcCCCCc----CChHHHHHHHHhhCCCEE
Q 033766 25 DFDAYVRQMRQPHSW----GGEPELLMSSHVLKMPIT 57 (112)
Q Consensus 25 ~~~~Y~~~m~~~~~W----Gg~iEl~Als~~~~~~I~ 57 (112)
+.++.|+.+.+. .| |-+-..++++.+|+++|-
T Consensus 28 s~~EAk~~v~~~-~~iSaIGH~sTA~lls~Llg~~ip 63 (114)
T 2x4i_A 28 DRLEFCENIDNE-DIINSIGHDSTIQLINSLCGTTFQ 63 (114)
T ss_dssp CHHHHHHHHCCT-TEEECCCCHHHHHHHHHHHCCCCC
T ss_pred CHHHHHHHhccc-CeEEeeccHHHHHHHHHHhCCCcc
Confidence 899999999744 44 888999999999999974
No 35
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=27.91 E-value=45 Score=21.25 Aligned_cols=34 Identities=9% Similarity=0.245 Sum_probs=25.2
Q ss_pred HHHHHHhcCCCC-cCChHHHHHHHHhhCCCEEEEE
Q 033766 27 DAYVRQMRQPHS-WGGEPELLMSSHVLKMPITVYM 60 (112)
Q Consensus 27 ~~Y~~~m~~~~~-WGg~iEl~Als~~~~~~I~V~~ 60 (112)
..|+.++++... -..--.|.++|++|+|++.-+-
T Consensus 43 ~s~is~iE~G~r~~Ps~~~l~~iA~~f~V~~~yl~ 77 (123)
T 3qwg_A 43 APYLSQLRSGNRTNPSGATMAALANFFRIKAAYFT 77 (123)
T ss_dssp HHHHHHHHHTSSCCCCHHHHHHHHHHTTSCTHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHhCCCHHHHc
Confidence 467778776443 5666789999999999986543
No 36
>2a5y_A Apoptosis regulator CED-9; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: f.1.4.1
Probab=27.82 E-value=23 Score=25.10 Aligned_cols=51 Identities=16% Similarity=0.033 Sum_probs=35.3
Q ss_pred HHHHHHHHHhhCccccccccc----------cCHHHHHHHhcC-----CC-CcCChHHHHHHHHhhC
Q 033766 3 LLGQVADEFLLRRAETEWFVE----------GDFDAYVRQMRQ-----PH-SWGGEPELLMSSHVLK 53 (112)
Q Consensus 3 lR~~~~~yi~~~~~~fe~fv~----------~~~~~Y~~~m~~-----~~-~WGg~iEl~Als~~~~ 53 (112)
||....+.-++|+..|...+. ..|.+-++.+-. +| .||-=+-|-|++-.+-
T Consensus 69 Lr~vgdelE~~~~~~f~~m~~qL~i~~~~a~~~F~~Va~elF~~~~eddGiNWGRIVaLfaF~g~La 135 (204)
T 2a5y_A 69 MRVMGTIFEKKHAENFETFSEQLLAVPRISFSLYQDVVRTVGNAQTDQSPMSYGRLIGLISFGGFVA 135 (204)
T ss_dssp HHHHHHHHHHHTCTTHHHHHHHHHSSSSCCHHHHHHHHTTTTCCC--CCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHH
Confidence 566666666688888887764 124444445556 66 7999999999887764
No 37
>3skq_A Mitochondrial distribution and morphology protein; 14-3-3-like membrane protein, mitochondrial ribosome, respir chain biogenesis; 2.10A {Saccharomyces cerevisiae}
Probab=27.74 E-value=36 Score=24.99 Aligned_cols=56 Identities=11% Similarity=0.115 Sum_probs=40.2
Q ss_pred hHHHHHHHHHhhCccccccc----cc-----cCHHHHHHHhcCCCC----cCChHHHHHHHHhhCCCEE
Q 033766 2 MLLGQVADEFLLRRAETEWF----VE-----GDFDAYVRQMRQPHS----WGGEPELLMSSHVLKMPIT 57 (112)
Q Consensus 2 ~lR~~~~~yi~~~~~~fe~f----v~-----~~~~~Y~~~m~~~~~----WGg~iEl~Als~~~~~~I~ 57 (112)
..|..++.||++.-++-.-. +. +.|.+|+++++..|+ +-..-||.++|++|+-+..
T Consensus 26 ~~r~e~a~FLq~tl~e~~~~~~~~~~~~~~~~~f~~f~~Kvr~~~e~~~~~ps~eeIl~vaklF~de~t 94 (249)
T 3skq_A 26 EIRKKTSEFLHETLEESNLITYNTIENAEKKQKFLNFFRKLYSAKEGKIMTFQHDEISAIAQMFKNDSV 94 (249)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCGGGCSSHHHHHHHHHHHHHHHTCBTTBCEEEEHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhcCCCcc
Confidence 47899999999876553211 11 359999999987652 3357889999999887774
No 38
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=27.54 E-value=60 Score=18.12 Aligned_cols=54 Identities=17% Similarity=0.083 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhCcccc-------ccccccCHHHHHHHhcCCCCcCChHHHHHHHHhhCCCEE
Q 033766 3 LLGQVADEFLLRRAET-------EWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPIT 57 (112)
Q Consensus 3 lR~~~~~yi~~~~~~f-------e~fv~~~~~~Y~~~m~~~~~WGg~iEl~Als~~~~~~I~ 57 (112)
++..+.+.|+.-+..- ..-+.-+ ..++.++.+...--.--.+..+|++|++++.
T Consensus 8 ~~~~~g~~lk~~R~~~glsq~~lA~~~gis-~~~i~~~e~g~~~~~~~~l~~ia~~l~v~~~ 68 (82)
T 3s8q_A 8 LLSKVSFVIKKIRLEKGMTQEDLAYKSNLD-RTYISGIERNSRNLTIKSLELIMKGLEVSDV 68 (82)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTCC-HHHHHHHHTTCCCCBHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHhCcC-HHHHHHHHCCCCCCCHHHHHHHHHHHCcCHH
Confidence 4555555555554431 1111123 3455555554445567788999999999863
No 39
>2rms_B MSIN3A-binding protein; protein/protein interaction, PAH domain, SIN3 corepressor, transcription repression, transcription regulation; NMR {Mus musculus}
Probab=27.38 E-value=36 Score=19.34 Aligned_cols=18 Identities=28% Similarity=0.613 Sum_probs=15.8
Q ss_pred CCcCChHHHHHHHHhhCC
Q 033766 37 HSWGGEPELLMSSHVLKM 54 (112)
Q Consensus 37 ~~WGg~iEl~Als~~~~~ 54 (112)
.+|=...||.||+-+++.
T Consensus 2 taWLSgpElIALtGLLQM 19 (61)
T 2rms_B 2 STWLSEAEMIALAGLLQM 19 (61)
T ss_dssp CCCSCHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHH
Confidence 579999999999999874
No 40
>1ew4_A CYAY protein; friedreich ataxia, frataxin family, iron homeostasis, unknown function; 1.40A {Escherichia coli} SCOP: d.82.2.1 PDB: 2eff_A 2p1x_A 1soy_A
Probab=27.32 E-value=72 Score=20.00 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=12.4
Q ss_pred CCeEEEEECCCC-ccccc
Q 033766 81 ENPIRVLYHGYG-HYDLL 97 (112)
Q Consensus 81 ~~~i~L~Y~~~g-HYdsv 97 (112)
.+.|+|+=...| ||+-.
T Consensus 57 ~~QIWlaSp~sG~hfd~~ 74 (106)
T 1ew4_A 57 LHQVWLATKQGGYHFDLK 74 (106)
T ss_dssp TTEEEEECSSCEEEEEEE
T ss_pred hhhheEecCCCceeeeec
Confidence 467999986556 98864
No 41
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=27.22 E-value=1e+02 Score=21.69 Aligned_cols=56 Identities=7% Similarity=-0.018 Sum_probs=40.7
Q ss_pred HHHHHHHhhCccccccccc--cCHHHHHHHhcCCCCcCCh----------HHHHHHHHhhCCCEEEEEec
Q 033766 5 GQVADEFLLRRAETEWFVE--GDFDAYVRQMRQPHSWGGE----------PELLMSSHVLKMPITVYMRD 62 (112)
Q Consensus 5 ~~~~~yi~~~~~~fe~fv~--~~~~~Y~~~m~~~~~WGg~----------iEl~Als~~~~~~I~V~~~~ 62 (112)
--++++|+++.+ -|.|+ -+.-++++.+.+-...++. -++..++++|+.+|.++...
T Consensus 71 Ggta~~Lr~~~~--iPVV~I~vs~~Dil~aL~~a~~~~~kIavVg~~~~~~~~~~i~~ll~~~i~~~~~~ 138 (225)
T 2pju_A 71 GSNGAYLKSRLS--VPVILIKPSGYDVLQFLAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYI 138 (225)
T ss_dssp HHHHHHHHTTCS--SCEEEECCCHHHHHHHHHHTTCTTSCEEEEEESSCCHHHHHHHHHHTCCEEEEEES
T ss_pred ChHHHHHHhhCC--CCEEEecCCHHHHHHHHHHHHhhCCcEEEEeCchhhhHHHHHHHHhCCceEEEEeC
Confidence 346778877754 67776 3677777776666555442 46788999999999998876
No 42
>2k3u_B C5AR(P7-28S) peptide, chemotaxis inhibitory protein; chemotaxis inhibitory protein (chips), sulfated tyrosine; HET: TYS; NMR {Staphylococcus aureus subsp}
Probab=26.77 E-value=17 Score=17.03 Aligned_cols=9 Identities=56% Similarity=0.984 Sum_probs=6.1
Q ss_pred CCCcccccc
Q 033766 90 GYGHYDLLR 98 (112)
Q Consensus 90 ~~gHYdsv~ 98 (112)
.+||||---
T Consensus 5 dyghyddkd 13 (26)
T 2k3u_B 5 DYGHYDDKD 13 (26)
T ss_dssp CCCEECSSS
T ss_pred cccccCCcc
Confidence 468998643
No 43
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=26.46 E-value=70 Score=17.16 Aligned_cols=30 Identities=13% Similarity=0.122 Sum_probs=19.2
Q ss_pred HHHHHHhcCCCCcCChHHHHHHHHhhCCCE
Q 033766 27 DAYVRQMRQPHSWGGEPELLMSSHVLKMPI 56 (112)
Q Consensus 27 ~~Y~~~m~~~~~WGg~iEl~Als~~~~~~I 56 (112)
..++.++.+...--.--.+..+|++|++++
T Consensus 40 ~~~i~~~e~g~~~~~~~~l~~l~~~l~~~~ 69 (74)
T 1y7y_A 40 RSYVGGVERGQRNVSLVNILKLATALDIEP 69 (74)
T ss_dssp HHHHHHHHTTCSCCBHHHHHHHHHHTTSCG
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhCcCH
Confidence 344555554434445567889999999875
No 44
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=26.25 E-value=60 Score=17.38 Aligned_cols=29 Identities=10% Similarity=0.045 Sum_probs=18.7
Q ss_pred HHHHHhcCCCCcCChHHHHHHHHhhCCCE
Q 033766 28 AYVRQMRQPHSWGGEPELLMSSHVLKMPI 56 (112)
Q Consensus 28 ~Y~~~m~~~~~WGg~iEl~Als~~~~~~I 56 (112)
.++.++.+...--.--.+..+|++|++++
T Consensus 38 ~~i~~~e~g~~~~~~~~l~~la~~l~v~~ 66 (71)
T 2ewt_A 38 VVVGSYERGDRAVTVQRLAELADFYGVPV 66 (71)
T ss_dssp HHHHHHHHTCSCCCHHHHHHHHHHHTSCG
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHCcCH
Confidence 34445444333345567889999999875
No 45
>2wh6_A Early antigen protein R; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Human herpesvirus 4} PDB: 2v6q_A 2xpx_A 1q59_A
Probab=25.83 E-value=31 Score=23.94 Aligned_cols=50 Identities=10% Similarity=-0.020 Sum_probs=34.4
Q ss_pred HHHHHHHHhhCccccccccc----------cCHHHHHHHhcCCC--CcCChHHHHHH-HHhhC
Q 033766 4 LGQVADEFLLRRAETEWFVE----------GDFDAYVRQMRQPH--SWGGEPELLMS-SHVLK 53 (112)
Q Consensus 4 R~~~~~yi~~~~~~fe~fv~----------~~~~~Y~~~m~~~~--~WGg~iEl~Al-s~~~~ 53 (112)
++..-+-+.+|.+.|...+. ..|..-++.|-++| +||--+-+-|+ +-++.
T Consensus 64 ~~~leeI~~~~~~~F~~ml~rl~~s~~ta~~~F~~VA~ELF~dG~INWGRIVALfaF~~~al~ 126 (173)
T 2wh6_A 64 HVLLEEIIERNSETFTETWNRFITHTEHVDLDFNSVFLEIFHRGDPSLGRALAWMAWCMHACR 126 (173)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHhCCCCCcceehhhhhhccccee
Confidence 33333444455666654443 36888899999998 79999999988 55554
No 46
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=25.14 E-value=67 Score=19.21 Aligned_cols=55 Identities=16% Similarity=0.091 Sum_probs=34.7
Q ss_pred hHHHHHHHHHhhCcccc-------ccccccCHHHHHHHhcCCCCcCChHHHHHHHHhhCCCEE
Q 033766 2 MLLGQVADEFLLRRAET-------EWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPIT 57 (112)
Q Consensus 2 ~lR~~~~~yi~~~~~~f-------e~fv~~~~~~Y~~~m~~~~~WGg~iEl~Als~~~~~~I~ 57 (112)
.+++.+.+-|+.-+..- ..-+.-+ ..++.++.+...--.--.|..+|++|++++.
T Consensus 24 ~~~~~ig~~lr~~R~~~gltq~elA~~~gis-~~~is~iE~G~~~ps~~~l~~ia~~l~v~~~ 85 (99)
T 3g5g_A 24 FLLSKVSFVIKKIRLEKGMTQEDLAYKSNLD-RTYISGIERNSRNLTIKSLELIMKGLEVSDV 85 (99)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHTCC-HHHHHHHHTTCSCCBHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCcC-HHHHHHHHCCCCCCCHHHHHHHHHHHCcCHH
Confidence 56677777776666542 1111122 4556666665555667788899999999863
No 47
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=25.05 E-value=81 Score=17.11 Aligned_cols=30 Identities=13% Similarity=0.060 Sum_probs=20.0
Q ss_pred HHHHHhcCCCC-cCChHHHHHHHHhhCCCEE
Q 033766 28 AYVRQMRQPHS-WGGEPELLMSSHVLKMPIT 57 (112)
Q Consensus 28 ~Y~~~m~~~~~-WGg~iEl~Als~~~~~~I~ 57 (112)
.++.++.+... --.--.+..+|++|++++.
T Consensus 35 ~~i~~~e~g~~~~~~~~~l~~ia~~l~~~~~ 65 (78)
T 3b7h_A 35 STVNAMFEGRSKRPTITTIRKVCGTLGISVH 65 (78)
T ss_dssp HHHHHHHCTTCCCCCHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHcCCCHH
Confidence 34455554333 4556678899999999864
No 48
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=25.01 E-value=81 Score=16.36 Aligned_cols=30 Identities=10% Similarity=0.045 Sum_probs=18.9
Q ss_pred HHHHHhcCCCCcCChHHHHHHHHhhCCCEE
Q 033766 28 AYVRQMRQPHSWGGEPELLMSSHVLKMPIT 57 (112)
Q Consensus 28 ~Y~~~m~~~~~WGg~iEl~Als~~~~~~I~ 57 (112)
.++.++.+...--..-.+..+|++|++++.
T Consensus 29 ~~i~~~e~g~~~~~~~~l~~i~~~l~~~~~ 58 (66)
T 2xi8_A 29 QTINGIEKNKYNPSLQLALKIAYYLNTPLE 58 (66)
T ss_dssp HHHHHHHTTSCCCCHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHCcCHH
Confidence 344444443333455678899999998763
No 49
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=24.99 E-value=72 Score=16.70 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=18.2
Q ss_pred HHHHHhcCCCCcCChHHHHHHHHhhCCCE
Q 033766 28 AYVRQMRQPHSWGGEPELLMSSHVLKMPI 56 (112)
Q Consensus 28 ~Y~~~m~~~~~WGg~iEl~Als~~~~~~I 56 (112)
.++.++.+...-...-.+..+|++|++++
T Consensus 33 ~~i~~~e~g~~~~~~~~l~~i~~~l~~~~ 61 (68)
T 2r1j_L 33 VAISQWERSETEPNGENLLALSKALQCSP 61 (68)
T ss_dssp HHHHHHHTTSSCCBHHHHHHHHHHTTSCH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhCCCH
Confidence 34444444333335566888999999875
No 50
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=24.35 E-value=89 Score=16.84 Aligned_cols=29 Identities=10% Similarity=0.021 Sum_probs=18.5
Q ss_pred HHHHhcCCCCcCChHHHHHHHHhhCCCEE
Q 033766 29 YVRQMRQPHSWGGEPELLMSSHVLKMPIT 57 (112)
Q Consensus 29 Y~~~m~~~~~WGg~iEl~Als~~~~~~I~ 57 (112)
++.++.+...-...-.+..+|++|++++.
T Consensus 39 ~i~~~e~g~~~~~~~~l~~ia~~l~~~~~ 67 (76)
T 3bs3_A 39 TISRWCSNKSQPSLDMLVKVAELLNVDPR 67 (76)
T ss_dssp HHHHHHTTSSCCCHHHHHHHHHHHTSCGG
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHCcCHH
Confidence 34444443333456678899999998763
No 51
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=24.14 E-value=85 Score=16.88 Aligned_cols=30 Identities=17% Similarity=0.128 Sum_probs=19.6
Q ss_pred HHHHHhcCCCCcCChHHHHHHHHhhCCCEE
Q 033766 28 AYVRQMRQPHSWGGEPELLMSSHVLKMPIT 57 (112)
Q Consensus 28 ~Y~~~m~~~~~WGg~iEl~Als~~~~~~I~ 57 (112)
.++.++.+...--..-.+..+|++|++++.
T Consensus 33 ~~i~~~e~g~~~~~~~~l~~ia~~l~~~~~ 62 (76)
T 1adr_A 33 VAISQWERSETEPNGENLLALSKALQCSPD 62 (76)
T ss_dssp HHHHHHHTTSSCCCHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHCcCHH
Confidence 344444443333456678899999998874
No 52
>3sk9_A Putative uncharacterized protein TTHB187; crispr, CAS, HD domain, nuclease, hydrolase; 1.80A {Thermus thermophilus HB8} PDB: 3skd_A
Probab=23.77 E-value=37 Score=24.74 Aligned_cols=26 Identities=12% Similarity=0.033 Sum_probs=19.3
Q ss_pred HHHHHHhhCcccccccccc-CHHHHHHH
Q 033766 6 QVADEFLLRRAETEWFVEG-DFDAYVRQ 32 (112)
Q Consensus 6 ~~~~yi~~~~~~fe~fv~~-~~~~Y~~~ 32 (112)
.++|+|-+|.+.| |++.+ ++++|-+.
T Consensus 207 i~ADWIaSne~~F-P~~~~~~l~~y~~~ 233 (265)
T 3sk9_A 207 SFADWVASDPSLF-PYGRDPRRGDYLKE 233 (265)
T ss_dssp HHHHHHHTCTTTS-CSCCCTTSTTHHHH
T ss_pred HHhhhhccchhhc-CCCCCcCHHHHHHH
Confidence 4789999999877 66653 67777664
No 53
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=23.70 E-value=93 Score=16.84 Aligned_cols=28 Identities=11% Similarity=0.031 Sum_probs=18.4
Q ss_pred HHHHhcCCCCcCChHHHHHHHHhhCCCE
Q 033766 29 YVRQMRQPHSWGGEPELLMSSHVLKMPI 56 (112)
Q Consensus 29 Y~~~m~~~~~WGg~iEl~Als~~~~~~I 56 (112)
++.++.+...--.--.+..+|++|++++
T Consensus 37 ~is~~e~g~~~~~~~~l~~ia~~l~v~~ 64 (73)
T 3omt_A 37 TVSKWCTNDVQPSLETLFDIAEALNVDV 64 (73)
T ss_dssp HHHHHHTTSSCCCHHHHHHHHHHHTSCG
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHCcCH
Confidence 3344443333356677889999999876
No 54
>2k0n_A Mediator of RNA polymerase II transcription subunit 15; protein, activator, nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae}
Probab=23.24 E-value=14 Score=22.52 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=23.7
Q ss_pred HHHHHhhCccccccccc---cCHHHHHHHhcC
Q 033766 7 VADEFLLRRAETEWFVE---GDFDAYVRQMRQ 35 (112)
Q Consensus 7 ~~~yi~~~~~~fe~fv~---~~~~~Y~~~m~~ 35 (112)
+++-|+.|.+.||.-+- .+-++|...|++
T Consensus 36 ~~EKlk~~A~~FEaaLyaksSSK~eYmdsMr~ 67 (85)
T 2k0n_A 36 TADKIRIHAKNFEAALFAKSSSKKEYMDSMNE 67 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 57788999999987664 379999999985
No 55
>2kua_A BCL-2-like protein 10; BOO, DIVA, apoptosis, BH3-only, membrane, mitochondri nucleus, transmembrane; NMR {Mus musculus}
Probab=22.74 E-value=34 Score=23.34 Aligned_cols=54 Identities=15% Similarity=0.062 Sum_probs=39.2
Q ss_pred hHHHHHHHHHhhCcccccccccc------CHHHHHHHhcCC--C-CcCChHHHHHHHHhhCCC
Q 033766 2 MLLGQVADEFLLRRAETEWFVEG------DFDAYVRQMRQP--H-SWGGEPELLMSSHVLKMP 55 (112)
Q Consensus 2 ~lR~~~~~yi~~~~~~fe~fv~~------~~~~Y~~~m~~~--~-~WGg~iEl~Als~~~~~~ 55 (112)
.||..+.+.-++|+..|..+... .|..-++.|-++ + .||-=+-|-|++-.+-+.
T Consensus 46 ~Lr~v~~ele~~~~~~f~~~~~~~~~a~~~f~~Va~elF~ddg~iNWGRIVaLfaF~g~La~~ 108 (170)
T 2kua_A 46 LLRSVTRQIQQEHQEFFSSFCESRGNRLELVKQMADKLLSKDQDFSWSQLVMLLAFAGTLMNQ 108 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHSCCSSSCCCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHh
Confidence 37887778888888888777742 244555555545 3 799999999999888555
No 56
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=22.67 E-value=69 Score=17.69 Aligned_cols=30 Identities=3% Similarity=-0.074 Sum_probs=19.6
Q ss_pred HHHHHhcCCCCcCChHHHHHHHHhhCCCEE
Q 033766 28 AYVRQMRQPHSWGGEPELLMSSHVLKMPIT 57 (112)
Q Consensus 28 ~Y~~~m~~~~~WGg~iEl~Als~~~~~~I~ 57 (112)
.++.++.+...--.--.+..+|++|++++.
T Consensus 30 ~~i~~~e~g~~~p~~~~l~~ia~~l~v~~~ 59 (77)
T 2k9q_A 30 QQLCNIEQSETAPVVVKYIAFLRSKGVDLN 59 (77)
T ss_dssp HHHHHHHTCCSCCHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhCcCHH
Confidence 455555554333444567889999999874
No 57
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=22.61 E-value=63 Score=20.78 Aligned_cols=33 Identities=9% Similarity=0.258 Sum_probs=24.0
Q ss_pred HHHHHHhcCCCC-cCChHHHHHHHHhhCCCEEEE
Q 033766 27 DAYVRQMRQPHS-WGGEPELLMSSHVLKMPITVY 59 (112)
Q Consensus 27 ~~Y~~~m~~~~~-WGg~iEl~Als~~~~~~I~V~ 59 (112)
..|+.++++... =-.--.|.++|++|+|++.-+
T Consensus 45 ~s~is~~E~G~r~~Ps~~~l~~iA~~f~V~~~yl 78 (135)
T 3r1f_A 45 APYLSQLRSGNRTNPSGATMAALANFFRIKAAYF 78 (135)
T ss_dssp HHHHHHHHHTSSCCCCHHHHHHHHHHHTSCTHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHhCCCHHHH
Confidence 467777775443 456677899999999997543
No 58
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=22.60 E-value=87 Score=16.93 Aligned_cols=30 Identities=10% Similarity=0.152 Sum_probs=19.3
Q ss_pred HHHHHHhcCCCCcCChHHHHHHHHhhCCCE
Q 033766 27 DAYVRQMRQPHSWGGEPELLMSSHVLKMPI 56 (112)
Q Consensus 27 ~~Y~~~m~~~~~WGg~iEl~Als~~~~~~I 56 (112)
..++.++.+...--.--.+..+|++|++++
T Consensus 37 ~~~i~~~e~g~~~~~~~~l~~la~~l~~~~ 66 (77)
T 2b5a_A 37 RTYISEVERGDRNISLINIHKICAALDIPA 66 (77)
T ss_dssp HHHHHHHHTTCSCCBHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhCcCH
Confidence 344455554333345567889999999876
No 59
>2w6k_A COBE; biosynthetic protein, cobalamin, complete proteome, vitamin B12; 1.70A {Pseudomonas aeruginosa} SCOP: c.151.1.1 PDB: 2bsn_A 2w6l_A
Probab=21.90 E-value=52 Score=21.78 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=21.8
Q ss_pred CCcCChHHHHHHHHhhCCCEEEEEe
Q 033766 37 HSWGGEPELLMSSHVLKMPITVYMR 61 (112)
Q Consensus 37 ~~WGg~iEl~Als~~~~~~I~V~~~ 61 (112)
..-.++.-|.++|+.|++|+..|..
T Consensus 52 d~K~dE~gL~~~A~~lg~pl~~~~~ 76 (145)
T 2w6k_A 52 DGKRDEPGLRQLATLLERPVHFLAP 76 (145)
T ss_dssp CSSSCCHHHHHHHHHHTSCEEEECH
T ss_pred HHhCCCHHHHHHHHHhCCCcEEeCH
Confidence 4457899999999999999999964
No 60
>1ohu_A Apoptosis regulator CED-9; BCL-2 family; 2.03A {Caenorhabditis elegans} SCOP: f.1.4.1 PDB: 1ty4_A
Probab=21.73 E-value=21 Score=24.57 Aligned_cols=51 Identities=16% Similarity=0.001 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhCccccccccc-------c---CHHHHHHHhcC-----CC-CcCChHHHHHHHHhhC
Q 033766 3 LLGQVADEFLLRRAETEWFVE-------G---DFDAYVRQMRQ-----PH-SWGGEPELLMSSHVLK 53 (112)
Q Consensus 3 lR~~~~~yi~~~~~~fe~fv~-------~---~~~~Y~~~m~~-----~~-~WGg~iEl~Als~~~~ 53 (112)
||....+.=++|+..|...+. . .|.+-++.+-+ +| .||-=+-|-|++-.+-
T Consensus 49 Lr~vgdelE~~~~~~f~~m~~qL~i~~~~a~~~f~~Va~elF~~~~e~dginWGRIVaLfaF~g~La 115 (175)
T 1ohu_A 49 MRVMGTIFEKKHAENFETFSEQLLAVPRISFSLYQDVVRTVGNAQTDQSPMSYGRLIGLISFGGFVA 115 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHTTSCC------CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHH
Confidence 565555555678888877664 1 23344444555 56 7999999999887763
No 61
>2hh8_A Hypothetical protein YDFO; structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Escherichia coli} SCOP: d.358.1.1
Probab=21.64 E-value=26 Score=23.73 Aligned_cols=14 Identities=21% Similarity=0.494 Sum_probs=12.4
Q ss_pred CHHHHHHHhcCCCC
Q 033766 25 DFDAYVRQMRQPHS 38 (112)
Q Consensus 25 ~~~~Y~~~m~~~~~ 38 (112)
+|++||+.+.+.|.
T Consensus 92 dF~tFC~~~A~AGV 105 (149)
T 2hh8_A 92 TFQEYRRNLAKAGV 105 (149)
T ss_dssp CHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHhCCc
Confidence 89999999998873
No 62
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=21.46 E-value=91 Score=17.47 Aligned_cols=31 Identities=10% Similarity=0.071 Sum_probs=20.2
Q ss_pred HHHHHHhcCCCC-cCChHHHHHHHHhhCCCEE
Q 033766 27 DAYVRQMRQPHS-WGGEPELLMSSHVLKMPIT 57 (112)
Q Consensus 27 ~~Y~~~m~~~~~-WGg~iEl~Als~~~~~~I~ 57 (112)
..++.++.+... --.--.+..+|++|++++.
T Consensus 41 ~~~is~~E~g~~~~p~~~~l~~ia~~l~v~~~ 72 (86)
T 2ofy_A 41 VETLRKIETGRIATPAFFTIAAVARVLDLSLD 72 (86)
T ss_dssp HHHHHHHHTTCCSSCBHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHhCCCHH
Confidence 345566665433 3444568899999999864
No 63
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=21.34 E-value=71 Score=18.66 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=20.9
Q ss_pred HHHhcCCCCcCChHHHHHHHHhhCCCEE
Q 033766 30 VRQMRQPHSWGGEPELLMSSHVLKMPIT 57 (112)
Q Consensus 30 ~~~m~~~~~WGg~iEl~Als~~~~~~I~ 57 (112)
+.++.+...--.--.+..+|++|++++.
T Consensus 35 is~~E~g~~~p~~~~l~~la~~l~v~~~ 62 (98)
T 3lfp_A 35 MNQYEKGKHAPDFEMANRLAKVLKIPVS 62 (98)
T ss_dssp HHHHHHTSSCCCHHHHHHHHHHHTSCGG
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHCcCHH
Confidence 6666655455667788889999999874
No 64
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=20.90 E-value=98 Score=17.26 Aligned_cols=21 Identities=10% Similarity=0.099 Sum_probs=16.6
Q ss_pred ChHHHHHHHHhhCCCEEEEEe
Q 033766 41 GEPELLMSSHVLKMPITVYMR 61 (112)
Q Consensus 41 g~iEl~Als~~~~~~I~V~~~ 61 (112)
.--.+..+|++|++++..+..
T Consensus 53 ~~~~l~~i~~~l~~~~~~l~~ 73 (88)
T 2wiu_B 53 TLTTFFKILQSLELSMTLCDA 73 (88)
T ss_dssp BHHHHHHHHHHTTCEEEEEC-
T ss_pred CHHHHHHHHHHhCCCHHHhcc
Confidence 455688999999999987763
No 65
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=20.85 E-value=1.1e+02 Score=16.94 Aligned_cols=30 Identities=7% Similarity=-0.026 Sum_probs=20.6
Q ss_pred HHHHHhcCCCCcCChHHHHHHHHhhCCCEE
Q 033766 28 AYVRQMRQPHSWGGEPELLMSSHVLKMPIT 57 (112)
Q Consensus 28 ~Y~~~m~~~~~WGg~iEl~Als~~~~~~I~ 57 (112)
.++.++.+...--.--.+..+|++|++++.
T Consensus 42 ~~is~~e~g~~~~~~~~l~~l~~~l~~~~~ 71 (83)
T 3f6w_A 42 SFVSKTENAERRLDVIEFMDFCRGIGTDPY 71 (83)
T ss_dssp HHHHHHHTTSSCCCHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHcCCCHH
Confidence 455565554344566788899999998863
No 66
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=20.67 E-value=1.1e+02 Score=18.09 Aligned_cols=28 Identities=11% Similarity=0.068 Sum_probs=19.5
Q ss_pred HHHHHhcCCCCcCChHHHHHHHHhhCCCE
Q 033766 28 AYVRQMRQPHSWGGEPELLMSSHVLKMPI 56 (112)
Q Consensus 28 ~Y~~~m~~~~~WGg~iEl~Als~~~~~~I 56 (112)
.++.++.+... -.--.|..+|++|++++
T Consensus 52 ~tis~iE~G~~-~s~~~l~kIa~~L~v~~ 79 (88)
T 3t76_A 52 STFAKLGKNEN-VSLTVLLAICEYLNCDF 79 (88)
T ss_dssp HHHHHHHTTCC-CCHHHHHHHHHHHTCCG
T ss_pred HHHHHHHcCCC-cCHHHHHHHHHHHCcCH
Confidence 45555555433 46677888999999886
No 67
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=20.65 E-value=1.1e+02 Score=17.65 Aligned_cols=31 Identities=0% Similarity=-0.150 Sum_probs=20.2
Q ss_pred HHHHHhcCCCCcCChHHHHHHHHhhCCCEEE
Q 033766 28 AYVRQMRQPHSWGGEPELLMSSHVLKMPITV 58 (112)
Q Consensus 28 ~Y~~~m~~~~~WGg~iEl~Als~~~~~~I~V 58 (112)
.++.++.+...--.--.+..+|++|++++.-
T Consensus 37 ~~is~~e~G~~~p~~~~l~~ia~~l~v~~~~ 67 (94)
T 2kpj_A 37 QTFNTWCKGIAIPRMGKVQALADYFNINKSD 67 (94)
T ss_dssp HHHHHHHTTSCCCCHHHHHHHHHHHTCCTHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHCcCHHH
Confidence 3444554433334566789999999988743
No 68
>3lu9_C Proteinase-activated receptor 1; serine protease, acute phase, blood coagulation, calcium, CL PAIR of basic residues, disease mutation; HET: NAG; 1.80A {Homo sapiens}
Probab=20.31 E-value=22 Score=16.91 Aligned_cols=11 Identities=18% Similarity=-0.112 Sum_probs=6.9
Q ss_pred hhCcccccccc
Q 033766 12 LLRRAETEWFV 22 (112)
Q Consensus 12 ~~~~~~fe~fv 22 (112)
++-.++||||.
T Consensus 14 rn~~d~FEp~~ 24 (25)
T 3lu9_C 14 RNPNDKYEPFW 24 (26)
T ss_dssp CTTTTCCCCCC
T ss_pred eCCcccccccc
Confidence 34455688884
Done!