BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033767
(112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3US6|A Chain A, Crystal Structure Of Histidine-Containing Phosphotransfer
Protein Mthpt1 From Medicago Truncatula
Length = 153
Score = 122 bits (307), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 59/106 (55%), Positives = 88/106 (83%)
Query: 4 VSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMAR 63
V Q+++Q++D+ S++ EG++D QF QL +LQDE++P+FV EV SLFFDD+E+++ ++
Sbjct: 3 VGQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSF 62
Query: 64 ALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQN 109
A++Q +DFK+VD+HVHQ KGSS+SIGA RVKN C+AFR+FC+ QN
Sbjct: 63 AVDQQSIDFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQN 108
>pdb|4EUK|B Chain B, Crystal Structure
Length = 159
Score = 121 bits (304), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/112 (58%), Positives = 87/112 (77%), Gaps = 1/112 (0%)
Query: 1 MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINS 60
MD+V Q QK D++ SL+ EG +D QF QL +LQDES+PDFV +V +LFF D+++++N
Sbjct: 6 MDLV-QKQKSLQDYTKSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILND 64
Query: 61 MARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
++ +L+Q VDFK+VD HVHQLKGSSSSIGA RVKN C+ FRSFC+ QN E
Sbjct: 65 LSLSLDQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEA 116
>pdb|1YVI|A Chain A, X-Ray Structure Of Putative Histidine-Containing
Phosphotransfer Protein From Rice, Ak104879
pdb|1YVI|B Chain B, X-Ray Structure Of Putative Histidine-Containing
Phosphotransfer Protein From Rice, Ak104879
pdb|2Q4F|A Chain A, Ensemble Refinement Of The Crystal Structure Of Putative
Histidine- Containing Phosphotransfer Protein From Rice,
Ak104879
pdb|2Q4F|B Chain B, Ensemble Refinement Of The Crystal Structure Of Putative
Histidine- Containing Phosphotransfer Protein From Rice,
Ak104879
Length = 149
Score = 116 bits (291), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 78/107 (72%), Gaps = 1/107 (0%)
Query: 7 LQKQFIDFSSSLYREGYVDDQFSQLHKLQDES-SPDFVVEVASLFFDDAEKLINSMARAL 65
L+ Q SS++ +G VD+QF QL LQDE +P FV EV +LF DDA+++IN +A L
Sbjct: 6 LRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLL 65
Query: 66 EQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
EQP V+F +VD++VHQLKGSS+S+GA +VK C+ FR FC ++R+G
Sbjct: 66 EQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDG 112
>pdb|1WN0|A Chain A, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|B Chain B, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|C Chain C, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|D Chain D, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
Length = 145
Score = 112 bits (279), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 54/109 (49%), Positives = 77/109 (70%), Gaps = 1/109 (0%)
Query: 5 SQLQKQFIDFSSSLYREGYVDDQFSQLHKLQ-DESSPDFVVEVASLFFDDAEKLINSMAR 63
+ L++Q SS++ G VD+QF QL LQ D +P FV EV +LF DDA+++I+ +A
Sbjct: 4 AALREQLNALLSSMFASGLVDEQFQQLQMLQEDGGTPGFVAEVVTLFCDDADRIISELAA 63
Query: 64 ALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
L+QP VDF +VD++VHQLKGSS+S+GA +VK C+ FR C +NR+G
Sbjct: 64 LLDQPIVDFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQLCQDKNRDG 112
>pdb|3RYS|A Chain A, The Crystal Structure Of Adenine Deaminase (Aaur1117) From
Arthrobacter Aurescens
pdb|3RYS|B Chain B, The Crystal Structure Of Adenine Deaminase (Aaur1117) From
Arthrobacter Aurescens
Length = 343
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 19 YREGYVDDQFSQLHKLQDESSPDFVV----EVASLFFDDAEKLI 58
Y GYVDD F QL K+ + S P+ + S F DA K +
Sbjct: 284 YFGGYVDDNFEQLVKVLEFSVPEQATLAANSIRSSFASDARKAV 327
>pdb|2QTY|A Chain A, Crystal Structure Of Mouse Adp-ribosylhydrolase 3 (marh3)
pdb|2QTY|B Chain B, Crystal Structure Of Mouse Adp-ribosylhydrolase 3 (marh3)
Length = 347
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 23/53 (43%)
Query: 57 LINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQN 109
+I + L C D + KGS + GA+RV + +A+ S D Q
Sbjct: 104 VITVFKKLLNPKCRDVYEPARAQFNGKGSYGNGGAMRVAGISLAYSSVQDVQK 156
>pdb|2G4K|A Chain A, Anomalous Substructure Of Human Adp-Ribosylhydrolase 3
Length = 347
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 83 KGSSSSIGALRVKNVCIAFRSFCDAQN 109
KGS + GA+RV + +A+ S D Q
Sbjct: 130 KGSYGNGGAMRVAGISLAYSSVQDVQK 156
>pdb|2FOZ|A Chain A, Human Adp-Ribosylhydrolase 3
pdb|2FP0|A Chain A, Human Adp-Ribosylhydrolase 3
pdb|2FP0|B Chain B, Human Adp-Ribosylhydrolase 3
Length = 347
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 83 KGSSSSIGALRVKNVCIAFRSFCDAQN 109
KGS + GA+RV + +A+ S D Q
Sbjct: 130 KGSYGNGGAMRVAGISLAYSSVQDVQK 156
>pdb|3KT4|A Chain A, Crystal Structure Of Tpa1 From Saccharomyces Cerevisiae, A
Component Of The Messenger Ribonucleoprotein Complex
Length = 633
Score = 25.4 bits (54), Expect = 8.2, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 4 VSQLQKQFIDFSSSLYREGYVDDQFSQLHK 33
+ +LQKQF++ +SSL E +++D S+L K
Sbjct: 333 IEKLQKQFVE-NSSLQIESFLNDDKSELLK 361
>pdb|3KT7|A Chain A, Crystal Structure Of Tpa1 From Saccharomyces Cerevisiae, A
Component Of The Messenger Ribonucleoprotein Complex
Length = 633
Score = 25.4 bits (54), Expect = 8.6, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 4 VSQLQKQFIDFSSSLYREGYVDDQFSQLHK 33
+ +LQKQF++ +SSL E +++D S+L K
Sbjct: 333 IEKLQKQFVE-NSSLQIESFLNDDKSELLK 361
>pdb|3KT1|A Chain A, Crystal Structure Of Tpa1 From Saccharomyces Cerevisiae, A
Component Of The Messenger Ribonucleoprotein Complex
Length = 633
Score = 25.4 bits (54), Expect = 8.6, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 4 VSQLQKQFIDFSSSLYREGYVDDQFSQLHK 33
+ +LQKQF++ +SSL E +++D S+L K
Sbjct: 333 IEKLQKQFVE-NSSLQIESFLNDDKSELLK 361
>pdb|3MGU|A Chain A, Saccharomyces Cerevisiae Tpa1
Length = 644
Score = 25.4 bits (54), Expect = 8.8, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 4 VSQLQKQFIDFSSSLYREGYVDDQFSQLHK 33
+ +LQKQF++ +SSL E +++D S+L K
Sbjct: 352 IEKLQKQFVE-NSSLQIESFLNDDKSELLK 380
>pdb|2HLE|A Chain A, Structural And Biophysical Characterization Of The
Ephb4-ephrinb2 Protein Protein Interaction And Receptor
Specificity
Length = 188
Score = 25.0 bits (53), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 55 EKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVC 98
E L+N+ + V F QVD +L G ++R VC
Sbjct: 10 ETLLNTKLETADLKWVTFPQVDGQWEELSGLDEEQHSVRTYEVC 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,884,045
Number of Sequences: 62578
Number of extensions: 94699
Number of successful extensions: 255
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 246
Number of HSP's gapped (non-prelim): 14
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)