BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033767
(112 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L9T7|AHP5_ARATH Histidine-containing phosphotransfer protein 5 OS=Arabidopsis
thaliana GN=AHP5 PE=1 SV=2
Length = 157
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/111 (69%), Positives = 94/111 (84%), Gaps = 1/111 (0%)
Query: 3 VVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMA 62
VV+QLQ+QF D+ SLY++G++D+QFS+L KLQDE +PDFV EV SLFFDD KLIN+M+
Sbjct: 5 VVAQLQRQFQDYIVSLYQQGFLDNQFSELRKLQDEGTPDFVAEVVSLFFDDCSKLINTMS 64
Query: 63 RALEQP-CVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
+LE+P VDFKQVDS VHQLKGSSSS+GA RVKNVCI+F+ CD QNREG
Sbjct: 65 ISLERPDNVDFKQVDSGVHQLKGSSSSVGARRVKNVCISFKECCDVQNREG 115
>sp|Q9SAZ5|AHP3_ARATH Histidine-containing phosphotransfer protein 3 OS=Arabidopsis
thaliana GN=AHP3 PE=1 SV=2
Length = 155
Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 90/111 (81%), Gaps = 1/111 (0%)
Query: 3 VVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMA 62
+++QLQ++F DF+ SLY +G++DDQF++L KLQDE SPDFV EV +LFF+D EKLI++MA
Sbjct: 4 LIAQLQRRFCDFTISLYHQGFLDDQFTELKKLQDECSPDFVAEVVTLFFEDCEKLISNMA 63
Query: 63 RALEQPC-VDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
RAL+Q VDFK V S VHQLKGSSSS+GA RVK +C+ + CD+QN EG
Sbjct: 64 RALDQTGNVDFKLVGSSVHQLKGSSSSVGAKRVKGLCVTLKECCDSQNYEG 114
>sp|Q9ZNV8|AHP2_ARATH Histidine-containing phosphotransfer protein 2 OS=Arabidopsis
thaliana GN=AHP2 PE=1 SV=1
Length = 156
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 66/111 (59%), Positives = 91/111 (81%), Gaps = 1/111 (0%)
Query: 3 VVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMA 62
+++QLQ+QF D++ SLY++G++DDQF++L KLQD+ SPDFV EV SLFF+D KLI++MA
Sbjct: 4 LIAQLQRQFRDYTISLYQQGFLDDQFTELKKLQDDGSPDFVSEVLSLFFEDCVKLISNMA 63
Query: 63 RALEQP-CVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
RAL+ VDF QV + VHQLKGSSSS+GA RVK +C++F+ C+A+N EG
Sbjct: 64 RALDTTGTVDFSQVGASVHQLKGSSSSVGAKRVKTLCVSFKECCEAKNYEG 114
>sp|Q9ZNV9|AHP1_ARATH Histidine-containing phosphotransfer protein 1 OS=Arabidopsis
thaliana GN=AHP1 PE=1 SV=1
Length = 154
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/112 (58%), Positives = 87/112 (77%), Gaps = 1/112 (0%)
Query: 1 MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINS 60
MD+V Q QK D++ SL+ EG +D QF QL +LQDES+PDFV +V +LFF D+++++N
Sbjct: 1 MDLV-QKQKSLQDYTKSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILND 59
Query: 61 MARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
++ +L+Q VDFK+VD HVHQLKGSSSSIGA RVKN C+ FRSFC+ QN E
Sbjct: 60 LSLSLDQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEA 111
>sp|Q6VAK4|HP1_ORYSJ Histidine-containing phosphotransfer protein 1 OS=Oryza sativa
subsp. japonica GN=HP1 PE=1 SV=1
Length = 149
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 78/107 (72%), Gaps = 1/107 (0%)
Query: 7 LQKQFIDFSSSLYREGYVDDQFSQLHKLQDES-SPDFVVEVASLFFDDAEKLINSMARAL 65
L+ Q SS++ +G VD+QF QL LQDE +P FV EV +LF DDA+++IN +A L
Sbjct: 6 LRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLL 65
Query: 66 EQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
EQP V+F +VD++VHQLKGSS+S+GA +VK C+ FR FC ++R+G
Sbjct: 66 EQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDG 112
>sp|Q9LU15|AHP4_ARATH Histidine-containing phosphotransfer protein 4 OS=Arabidopsis
thaliana GN=AHP4 PE=1 SV=2
Length = 127
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 47/92 (51%), Positives = 72/92 (78%)
Query: 21 EGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVH 80
+GY+D+QF +L +LQD+++P+FV EV++L+F D+ +LIN++ +ALE+ DF ++DS++H
Sbjct: 9 QGYLDEQFMELEELQDDANPNFVEEVSALYFKDSARLINNIDQALERGSFDFNRLDSYMH 68
Query: 81 QLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
Q KGSS+SIGA +VK C FR +C A N EG
Sbjct: 69 QFKGSSTSIGASKVKAECTTFREYCRAGNAEG 100
>sp|Q9SSC9|AHP6_ARATH Histidine-containing phosphotransfer protein 6 OS=Arabidopsis
thaliana GN=AHP6 PE=2 SV=2
Length = 154
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 77/110 (70%), Gaps = 1/110 (0%)
Query: 4 VSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEK-LINSMA 62
V +LQ +SL+ +G +D+QF QL +LQDE+SP+FV +V +++FD++EK L N
Sbjct: 6 VDRLQADINRLLASLFHQGVLDEQFLQLQQLQDETSPNFVYDVINIYFDESEKLLRNLRL 65
Query: 63 RALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
+++ D+K++ H++QL GSSSSIGA RV+NVC+AFRS + NR G
Sbjct: 66 LLMDREFSDYKKIGLHLNQLVGSSSSIGARRVRNVCVAFRSASELSNRPG 115
>sp|O94321|MPR1_SCHPO Multistep phosphorelay regulator 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mpr1 PE=1 SV=1
Length = 295
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 28 FSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSS 87
F QL ++ D+ +F + +F+ AE I + +ALE D K++ S H LKGSS+
Sbjct: 171 FDQLLEMDDDDEHEFSKSIVWNYFEQAETTIADLQKALE--AKDLKKLSSLGHFLKGSSA 228
Query: 88 SIGALRVKNVCIAFRSFCDAQNREG 112
+G +++ VC +++ ++R+G
Sbjct: 229 VLGLTKMRKVCERIQNYGSLRSRDG 253
>sp|C5BS89|NRDR_TERTT Transcriptional repressor NrdR OS=Teredinibacter turnerae (strain
ATCC 39867 / T7901) GN=nrdR PE=3 SV=1
Length = 155
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 53 DAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQN 109
D EKL N + RALE+ V + +++ +H ++ ++G +K++ I + + QN
Sbjct: 62 DEEKLRNGLQRALEKRPVSVEAIETALHNVRHYLQALGEREIKSLVIGEKVMEELQN 118
>sp|A3DKB6|SYA_CLOTH Alanine--tRNA ligase OS=Clostridium thermocellum (strain ATCC 27405
/ DSM 1237) GN=alaS PE=3 SV=1
Length = 880
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 45 EVASLFFDDAEKLINSMARALE-QPCVDFKQVDSHVHQLKGSSSSIGALRVKNV 97
E A FD+ EKL+ +A+ L+ P K+++S ++++K + I LR K V
Sbjct: 703 EAALKHFDEEEKLLRDIAQVLKTNPSDSVKRIESLLNEIKAAQKEIEQLRSKLV 756
>sp|Q54RR8|RDEA_DICDI Phosphorelay intermediate protein rdeA OS=Dictyostelium discoideum
GN=rdeA PE=1 SV=1
Length = 254
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 37 ESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKN 96
E +F E+ + E+ + + + E D K H H +KGSSS IG V+
Sbjct: 24 EGEKEFTFELLDSYISSVEEHLPELLNSFE--AKDLKGAVLHSHDIKGSSSYIGCEAVRY 81
Query: 97 VCIAFRSFC 105
V ++C
Sbjct: 82 VSGKIEAYC 90
>sp|Q5RA93|CWC22_PONAB Pre-mRNA-splicing factor CWC22 homolog OS=Pongo abelii GN=CWC22
PE=2 SV=1
Length = 908
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query: 25 DDQFSQLHKLQDESSPDFVVEVASL---FFDDAEKLINSMARALEQPCVDFKQVDSHVHQ 81
DDQF+ + L+D+ +P+ V+ V + F ++ EK +A+++ +D DS+ Q
Sbjct: 363 DDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENEEKY-----KAIKKEILDEGDTDSNTDQ 417
Query: 82 LKGSS 86
GSS
Sbjct: 418 DAGSS 422
>sp|A2ALK8|PTN3_MOUSE Tyrosine-protein phosphatase non-receptor type 3 OS=Mus musculus
GN=Ptpn3 PE=2 SV=1
Length = 913
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 24/114 (21%)
Query: 7 LQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFF-------DDAEKLIN 59
+Q F DF+SS++ GY+ D SQ Q++ DF+ +V SL +AE
Sbjct: 154 VQSHFGDFNSSIHHPGYLAD--SQFIPDQND---DFLSKVESLHEQHSGLKQSEAESCYI 208
Query: 60 SMARALEQPCVDFKQVDSH----VHQLK---GSSSSIGALRVKNVCIAFRSFCD 106
++AR L DF V+ H +H L G +S+ A+ K +C +F + +
Sbjct: 209 NIARTL-----DFYGVELHGGRDLHNLDLMIGIASAGIAVYRKYICTSFYPWVN 257
>sp|Q9HCG8|CWC22_HUMAN Pre-mRNA-splicing factor CWC22 homolog OS=Homo sapiens GN=CWC22
PE=1 SV=3
Length = 908
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query: 25 DDQFSQLHKLQDESSPDFVVEVASL---FFDDAEKLINSMARALEQPCVDFKQVDSHVHQ 81
DDQF+ + L+D+ +P+ V+ V + F ++ EK +A+++ +D DS+ Q
Sbjct: 363 DDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENEEKY-----KAIKKEILDEGDTDSNTDQ 417
Query: 82 LKGSS 86
GSS
Sbjct: 418 DAGSS 422
>sp|A6TXC7|RECR_ALKMQ Recombination protein RecR OS=Alkaliphilus metalliredigens
(strain QYMF) GN=recR PE=3 SV=1
Length = 199
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 26 DQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARA 64
D+FS+L + +++ V S+ ++DAEKL NS+ A
Sbjct: 13 DEFSKLPGIGRKTAQRLAFHVISMGYEDAEKLSNSIIEA 51
>sp|Q8C5N3|CWC22_MOUSE Pre-mRNA-splicing factor CWC22 homolog OS=Mus musculus GN=Cwc22
PE=1 SV=1
Length = 908
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query: 25 DDQFSQLHKLQDESSPDFVVEVASL---FFDDAEKLINSMARALEQPCVDFKQVDSHVHQ 81
DDQF+ + L+D+ +P+ V+ V + F ++ EK +A+++ +D DS+ Q
Sbjct: 361 DDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENEEKY-----KAIKKEILDEGDSDSNTDQ 415
Query: 82 LKGSS 86
GSS
Sbjct: 416 GAGSS 420
>sp|P0C0F6|RPFC_XANCP Sensory/regulatory protein RpfC OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=rpfC PE=1 SV=2
Length = 726
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 51 FDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRV 94
DDA+ + + R + C D++Q+ H L+G +S++G +V
Sbjct: 630 LDDAQNCVGDIER--DGTCSDWEQLRESAHALRGVASNLGLAQV 671
>sp|P0C0F7|RPFC_XANC8 Sensory/regulatory protein RpfC OS=Xanthomonas campestris pv.
campestris (strain 8004) GN=rpfC PE=3 SV=2
Length = 726
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 51 FDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRV 94
DDA+ + + R + C D++Q+ H L+G +S++G +V
Sbjct: 630 LDDAQNCVGDIER--DGTCSDWEQLRESAHALRGVASNLGLAQV 671
>sp|Q21F15|NRDR_SACD2 Transcriptional repressor NrdR OS=Saccharophagus degradans (strain
2-40 / ATCC 43961 / DSM 17024) GN=nrdR PE=3 SV=2
Length = 156
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 53 DAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIA 100
D EKL + RALE+ V + ++S V +K ++G VK++ I
Sbjct: 62 DEEKLRAGLQRALEKRPVSVEAIESSVQNVKHYLQALGEREVKSLMIG 109
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,401,605
Number of Sequences: 539616
Number of extensions: 1233602
Number of successful extensions: 3333
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 3313
Number of HSP's gapped (non-prelim): 28
length of query: 112
length of database: 191,569,459
effective HSP length: 80
effective length of query: 32
effective length of database: 148,400,179
effective search space: 4748805728
effective search space used: 4748805728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)