BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033769
(112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CCR|A Chain A, Structure Of Rice Ferricytochrome C At 2.0 Angstroms
Resolution
Length = 112
Score = 210 bits (535), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 99/111 (89%), Positives = 104/111 (93%)
Query: 2 ASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN 61
ASF EAPPGNPKAGEKIFKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTTPGYSYS A+
Sbjct: 2 ASFSEAPPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTAD 61
Query: 62 KGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
K MAVIWEE TLYDYLLNP KYIPGTKMVFPGL KPQ+RADLI+YLKE+T+
Sbjct: 62 KNMAVIWEENTLYDYLLNPXKYIPGTKMVFPGLXKPQERADLISYLKEATS 112
>pdb|1J3S|A Chain A, Solution Structure Of Reduced Recombinant Human Cytochrome
C
Length = 104
Score = 146 bits (368), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 67/102 (65%), Positives = 83/102 (81%)
Query: 10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWE 69
G+ + G+KIF KC+QCHTV KG HK GPNL+GLFGR++G PGYSY+AANK +IW
Sbjct: 1 GDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIWG 60
Query: 70 EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
E TL +YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct: 61 EDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 102
>pdb|3NWV|A Chain A, Human Cytochrome C G41s
pdb|3NWV|B Chain B, Human Cytochrome C G41s
pdb|3NWV|C Chain C, Human Cytochrome C G41s
pdb|3NWV|D Chain D, Human Cytochrome C G41s
Length = 104
Score = 144 bits (363), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 66/102 (64%), Positives = 82/102 (80%)
Query: 10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWE 69
G+ + G+KIF KC+QCHTV KG HK GPNL+GLFGR++ PGYSY+AANK +IW
Sbjct: 1 GDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTSQAPGYSYTAANKNKGIIWG 60
Query: 70 EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
E TL +YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct: 61 EDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 102
>pdb|2AIU|A Chain A, Crystal Structure Of Mouse Testicular Cytochrome C At 1.6
Angstrom
Length = 105
Score = 144 bits (363), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 66/103 (64%), Positives = 81/103 (78%)
Query: 10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWE 69
G+ +AG+KIF KCAQCHTV KG HK GPNL GLFGR++G PG+SY+ ANK VIW
Sbjct: 2 GDAEAGKKIFVQKCAQCHTVEKGGKHKTGPNLWGLFGRKTGQAPGFSYTDANKNKGVIWS 61
Query: 70 EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
E+TL +YL NPKKYIPGTKM+F G+KK +R DLI YLK++T+
Sbjct: 62 EETLMEYLENPKKYIPGTKMIFAGIKKKSEREDLIKYLKQATS 104
>pdb|1CRC|A Chain A, Cytochrome C At Low Ionic Strength
pdb|1CRC|B Chain B, Cytochrome C At Low Ionic Strength
pdb|1HRC|A Chain A, High-Resolution Three-Dimensional Structure Of Horse Heart
Cytochrome C
pdb|3O1Y|A Chain A, Electron Transfer Complexes: Experimental Mapping Of The
Redox- Dependent Cytochrome C Electrostatic Surface
pdb|3O1Y|B Chain B, Electron Transfer Complexes: Experimental Mapping Of The
Redox- Dependent Cytochrome C Electrostatic Surface
pdb|3O1Y|C Chain C, Electron Transfer Complexes: Experimental Mapping Of The
Redox- Dependent Cytochrome C Electrostatic Surface
pdb|3O20|A Chain A, Electron Transfer Complexes:experimental Mapping Of The
Redox- Dependent Cytochrome C Electrostatic Surface
pdb|3O20|B Chain B, Electron Transfer Complexes:experimental Mapping Of The
Redox- Dependent Cytochrome C Electrostatic Surface
pdb|3O20|C Chain C, Electron Transfer Complexes:experimental Mapping Of The
Redox- Dependent Cytochrome C Electrostatic Surface
pdb|1WEJ|F Chain F, Igg1 Fab Fragment (Of E8 Antibody) Complexed With Horse
Cytochrome C At 1.8 A Resolution
Length = 105
Score = 140 bits (352), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 81/102 (79%)
Query: 10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWE 69
G+ + G+KIF KCAQCHTV KG HK GPNL+GLFGR++G PG++Y+ ANK + W+
Sbjct: 2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWK 61
Query: 70 EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
E+TL +YL NPKKYIPGTKM+F G+KK +R DLIAYLK++T
Sbjct: 62 EETLMEYLENPKKYIPGTKMIFAGIKKKTEREDLIAYLKKAT 103
>pdb|2PCB|B Chain B, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U75|B Chain B, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1AKK|A Chain A, Solution Structure Of Oxidized Horse Heart Cytochrome C,
Nmr, Minimized Average Structure
pdb|1FI7|A Chain A, Solution Structure Of The Imidazole Complex Of Cytochrome
C
pdb|1FI9|A Chain A, Solution Structure Of The Imidazole Complex Of Cytochrome
C
pdb|1I5T|A Chain A, Solution Structure Of Cyanoferricytochrome C
pdb|1LC1|A Chain A, Solution Structure Of Reduced Horse Heart Cytochrome C In
30% Acetonitrile Solution, Nmr Minimized Average
Structure
pdb|1LC2|A Chain A, Solution Structure Of Reduced Horse Heart Cytochrome C In
30% Acetonitrile Solution, Nmr 30 Structures
pdb|1M60|A Chain A, Solution Structure Of Zinc-Substituted Cytochrome C
pdb|1OCD|A Chain A, Cytochrome C (Oxidized) From Equus Caballus, Nmr,
Minimized Average Structure
pdb|2FRC|A Chain A, Cytochrome C (Reduced) From Equus Caballus, Nmr, Minimized
Average Structure
pdb|2GIW|A Chain A, Solution Structure Of Reduced Horse Heart Cytochrome C,
Nmr, 40 Structures
pdb|3NBS|A Chain A, Crystal Structure Of Dimeric Cytochrome C From Horse Heart
pdb|3NBS|B Chain B, Crystal Structure Of Dimeric Cytochrome C From Horse Heart
pdb|3NBS|C Chain C, Crystal Structure Of Dimeric Cytochrome C From Horse Heart
pdb|3NBS|D Chain D, Crystal Structure Of Dimeric Cytochrome C From Horse Heart
pdb|3NBT|A Chain A, Crystal Structure Of Trimeric Cytochrome C From Horse
Heart
pdb|3NBT|B Chain B, Crystal Structure Of Trimeric Cytochrome C From Horse
Heart
pdb|3NBT|C Chain C, Crystal Structure Of Trimeric Cytochrome C From Horse
Heart
pdb|3NBT|D Chain D, Crystal Structure Of Trimeric Cytochrome C From Horse
Heart
pdb|3NBT|E Chain E, Crystal Structure Of Trimeric Cytochrome C From Horse
Heart
pdb|3NBT|F Chain F, Crystal Structure Of Trimeric Cytochrome C From Horse
Heart
Length = 104
Score = 140 bits (352), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 81/102 (79%)
Query: 10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWE 69
G+ + G+KIF KCAQCHTV KG HK GPNL+GLFGR++G PG++Y+ ANK + W+
Sbjct: 1 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWK 60
Query: 70 EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
E+TL +YL NPKKYIPGTKM+F G+KK +R DLIAYLK++T
Sbjct: 61 EETLMEYLENPKKYIPGTKMIFAGIKKKTEREDLIAYLKKAT 102
>pdb|2B4Z|A Chain A, Crystal Structure Of Cytochrome C From Bovine Heart At 1.5
A Resolution.
pdb|2YBB|Y Chain Y, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 104
Score = 139 bits (350), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 64/102 (62%), Positives = 80/102 (78%)
Query: 10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWE 69
G+ + G+KIF KCAQCHTV KG HK GPNL+GLFGR++G PG+SY+ ANK + W
Sbjct: 1 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWG 60
Query: 70 EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
E+TL +YL NPKKYIPGTKM+F G+KK +R DLIAYLK++T
Sbjct: 61 EETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKAT 102
>pdb|1GIW|A Chain A, Solution Structure Of Reduced Horse Heart Cytochrome C,
Nmr, Minimized Average Structure
Length = 104
Score = 138 bits (348), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 62/97 (63%), Positives = 78/97 (80%)
Query: 15 GEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLY 74
G+KIF KCAQCHTV KG HK GPNL+GLFGR++G PG++Y+ ANK + W+E+TL
Sbjct: 6 GKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWKEETLM 65
Query: 75 DYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
+YL NPKKYIPGTKM+F G+KK +R DLIAYLK++T
Sbjct: 66 EYLENPKKYIPGTKMIFAGIKKKTEREDLIAYLKKAT 102
>pdb|1NMI|A Chain A, Solution Structure Of The Imidazole Complex Of Iso-1
Cytochrome C
pdb|2HV4|A Chain A, Nmr Solution Structure Refinement Of Yeast Iso-1-
Ferrocytochrome C
pdb|2ORL|A Chain A, Solution Structure Of The Cytochrome C- Para-Aminophenol
Adduct
pdb|3TYI|A Chain A, Crystal Structure Of Cytochrome C -
P-Sulfonatocalix[4]arene Complexes
pdb|3TYI|B Chain B, Crystal Structure Of Cytochrome C -
P-Sulfonatocalix[4]arene Complexes
Length = 108
Score = 134 bits (337), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 76/106 (71%)
Query: 6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
E G+ K G +FKT+C QCHTV KG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
V+W+E + +YL NPKKYIPGTKM F GLKK +DR DLI YLK++T
Sbjct: 62 VLWDENNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLITYLKKAT 107
>pdb|1S6V|B Chain B, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|D Chain D, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 108
Score = 134 bits (337), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 76/106 (71%)
Query: 6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
E G+ K G +FKT+C QCHTV KG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
V+W+E + +YL NPKKYIPGTKM F GLKK +DR DLI YLK++T
Sbjct: 62 VLWDENNMSEYLTNPKKYIPGTKMCFGGLKKEKDRNDLITYLKKAT 107
>pdb|2JQR|A Chain A, Solution Model Of Crosslinked Complex Of Cytochrome C And
Adrenodoxin
Length = 108
Score = 134 bits (336), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 76/106 (71%)
Query: 6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
E G+ K G +FKT+C QCHTV KG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKCGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
V+W+E + +YL NPKKYIPGTKM F GLKK +DR DLI YLK++T
Sbjct: 62 VLWDENNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLITYLKKAT 107
>pdb|1U74|B Chain B, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|D Chain D, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|2BCN|B Chain B, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
Length = 108
Score = 133 bits (334), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 76/106 (71%)
Query: 6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
E G+ K G +FKT+C QCHTV KG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
V+W+E + +YL NPKKYIPGTKM F GLKK +DR DLI YLK+++
Sbjct: 62 VLWDENNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLITYLKKAS 107
>pdb|1CYC|A Chain A, The Crystal Structure Of Bonito (Katsuo) Ferrocytochrome C
At 2.3 Angstroms Resolution. Ii. Structure And Function
pdb|1CYC|B Chain B, The Crystal Structure Of Bonito (Katsuo) Ferrocytochrome C
At 2.3 Angstroms Resolution. Ii. Structure And Function
Length = 103
Score = 133 bits (334), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 61/103 (59%), Positives = 75/103 (72%)
Query: 10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWE 69
G+ G+K F KCAQCHTV G HK GPNL GLFGR++G GYSY+ ANK ++W
Sbjct: 1 GDVAKGKKTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWN 60
Query: 70 EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
E TL +YL NPKKYIPGTKM+F G+KK +R DL+AYLK +T+
Sbjct: 61 ENTLMEYLENPKKYIPGTKMIFAGIKKKGERQDLVAYLKSATS 103
>pdb|2YCC|A Chain A, Oxidation State-Dependent Conformational Changes In
Cytochrome C
Length = 108
Score = 132 bits (332), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 75/106 (70%)
Query: 6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
E G+ K G +FKT+C QCHTV KG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
V+W+E + +YL NP KYIPGTKM F GLKK +DR DLI YLK++T
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKAT 107
>pdb|2PCC|B Chain B, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|D Chain D, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2GB8|B Chain B, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
Length = 108
Score = 132 bits (332), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 75/105 (71%)
Query: 6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
E G+ K G +FKT+C QCHTV KG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110
V+W+E + +YL NPKKYIPGTKM F GLKK +DR DLI YLK++
Sbjct: 62 VLWDENNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLITYLKKA 106
>pdb|1CSW|A Chain A, Replacements In A Conserved Leucine Cluster In The
Hydrophobic Heme Pocket Of Cytochrome C
Length = 108
Score = 132 bits (331), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 75/106 (70%)
Query: 6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
E G+ K G +FKT+C QCHTV KG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
V+W+E + +YL NP KYIPGTKM F G+KK +DR DLI YLK++T
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMAFGGMKKEKDRNDLITYLKKAT 107
>pdb|1CTY|A Chain A, Mutation Of Tyrosine-67 In Cytochrome C Significantly
Alters The Local Heme Environment
pdb|1CTZ|A Chain A, Mutation Of Tyrosine-67 In Cytochrome C Significantly
Alters The Local Heme Environment
Length = 108
Score = 131 bits (329), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 75/106 (70%)
Query: 6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
E G+ K G +FKT+C QCHTV KG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
V+W+E + ++L NP KYIPGTKM F GLKK +DR DLI YLK++T
Sbjct: 62 VLWDENNMSEFLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKAT 107
>pdb|1IRV|A Chain A, Cytochrome C Isozyme 1, Reduced, Mutant With Ile 75
Replaced By Met And Cys 102 Replaced By Thr
Length = 108
Score = 131 bits (329), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 75/106 (70%)
Query: 6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
E G+ K G +FKT+C QCHTV KG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
V+W+E + +YL NP KY+PGTKM F GLKK +DR DLI YLK++T
Sbjct: 62 VLWDENNMSEYLTNPXKYMPGTKMAFGGLKKEKDRNDLITYLKKAT 107
>pdb|1YIC|A Chain A, The Oxidized Saccharomyces Cerevisiae Iso-1-Cytochrome C,
Nmr, 20 Structures
Length = 108
Score = 131 bits (329), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 75/106 (70%)
Query: 6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
E G+ K G +FKT+C QCHTV KG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
V+W+E + +YL NP KYIPGTKM F GLKK +DR DLI YLK+++
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKAS 107
>pdb|1CSV|A Chain A, Replacements In A Conserved Leucine Cluster In The
Hydrophobic Heme Pocket Of Cytochrome C
Length = 108
Score = 131 bits (329), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 74/106 (69%)
Query: 6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
E G+ K G +FKT+C QCHTV KG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
V+W+E + +YL NP KYIPGTKM F G KK +DR DLI YLK++T
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMAFGGFKKEKDRNDLITYLKKAT 107
>pdb|1YFC|A Chain A, Solution Nmr Structure Of A Yeast Iso-1-Ferrocytochrome C
Length = 108
Score = 131 bits (329), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 75/106 (70%)
Query: 6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
E G+ K G +FKT+C QCHTV KG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
V+W+E + +YL NP KYIPGTKM F GLKK +DR DLI YLK+++
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKAS 107
>pdb|3CYT|O Chain O, Redox Conformation Changes In Refined Tuna Cytochrome C
pdb|3CYT|I Chain I, Redox Conformation Changes In Refined Tuna Cytochrome C
pdb|5CYT|R Chain R, Refinement Of Myoglobin And Cytochrome C
Length = 104
Score = 131 bits (329), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 74/103 (71%)
Query: 10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWE 69
G+ G+K F KCAQCHTV G HK GPNL GLFGR++G GYSY+ ANK ++W
Sbjct: 2 GDVAKGKKTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWN 61
Query: 70 EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
TL +YL NPKKYIPGTKM+F G+KK +R DL+AYLK +T+
Sbjct: 62 NDTLMEYLENPKKYIPGTKMIFAGIKKKGERQDLVAYLKSATS 104
>pdb|1I54|A Chain A, Cytochrome C (Tuna) 2fe:1zn Mixed-Metal Porphyrins
pdb|1I54|B Chain B, Cytochrome C (Tuna) 2fe:1zn Mixed-Metal Porphyrins
pdb|1I55|A Chain A, Cytochrome C (Tuna) With 2zn:1fe Mixed-Metal Porphyrins
pdb|1I55|B Chain B, Cytochrome C (Tuna) With 2zn:1fe Mixed-Metal Porphyrins
pdb|1LFM|A Chain A, Crystal Structure Of Cobalt(Iii)-Substituted Cytochrome C
(Tuna)
pdb|1LFM|B Chain B, Crystal Structure Of Cobalt(Iii)-Substituted Cytochrome C
(Tuna)
Length = 103
Score = 131 bits (329), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 74/103 (71%)
Query: 10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWE 69
G+ G+K F KCAQCHTV G HK GPNL GLFGR++G GYSY+ ANK ++W
Sbjct: 1 GDVAKGKKTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWN 60
Query: 70 EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
TL +YL NPKKYIPGTKM+F G+KK +R DL+AYLK +T+
Sbjct: 61 NDTLMEYLENPKKYIPGTKMIFAGIKKKGERQDLVAYLKSATS 103
>pdb|1CHH|A Chain A, Structural Studies Of The Roles Of Residues 82 And 85 At
The Interactive Face Of Cytochrome C
Length = 108
Score = 130 bits (328), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 75/106 (70%)
Query: 6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
E G+ K G +FKT+C QCHTV KG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
V+W+E + +YL NP KYIPGTKM + GLKK +DR DLI YLK++T
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMAYGGLKKEKDRNDLITYLKKAT 107
>pdb|2B12|B Chain B, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
Length = 108
Score = 130 bits (328), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 75/105 (71%)
Query: 6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
E G+ K G +FKT+C QCHTV KG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110
V+W+E + +YL NPKKYIPGTKM + GLKK +DR DLI YLK++
Sbjct: 62 VLWDENNMSEYLTNPKKYIPGTKMAYGGLKKEKDRNDLITYLKKA 106
>pdb|2JTI|B Chain B, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 108
Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 74/105 (70%)
Query: 6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
E G+ K G +FK +C QCHTV KG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKARCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110
V+W+E + +YL NPKKYIPGTKM F GLKK +DR DLI YLK++
Sbjct: 62 VLWDENNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLITYLKKA 106
>pdb|1FHB|A Chain A, Three-Dimensional Solution Structure Of The Cyanide Adduct
Of A Met80ala Variant Of Saccharomyces Cerevisiae Iso-1-
Cytochrome C. Identification Of Ligand-Residue
Interactions In The Distal Heme Cavity
Length = 108
Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 75/106 (70%)
Query: 6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
E G+ K G +FKT+C QCHTV KG HK GPNL+G+FGRQSG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRQSGQAEGYSYTDANIKKN 61
Query: 66 VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
V+W+E + +YL NP KYIPGTK F GLKK +DR DLI YLK+++
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKAAFGGLKKEKDRNDLITYLKKAS 107
>pdb|1KYO|W Chain W, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|3CX5|W Chain W, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|1YCC|A Chain A, High-Resolution Refinement Of Yeast Iso-1-Cytochrome C And
Comparisons With Other Eukaryotic Cytochromes C
Length = 108
Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 74/105 (70%)
Query: 6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
E G+ K G +FKT+C QCHTV KG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110
V+W+E + +YL NP KYIPGTKM F GLKK +DR DLI YLK++
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKA 106
>pdb|2B11|B Chain B, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|D Chain D, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
Length = 108
Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 75/105 (71%)
Query: 6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
E G+ K G +FKT+C QCHTV KG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110
V+W+E + +YL NPKKYIPGTKM + GLKK +DR DLI YLK++
Sbjct: 62 VLWDENNMSEYLTNPKKYIPGTKMAWGGLKKEKDRNDLITYLKKA 106
>pdb|1LMS|A Chain A, Structural Model For An Alkaline Form Of Ferricytochrome C
Length = 108
Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 74/106 (69%)
Query: 6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
E G+ K G +FKT+C QCHTV KG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
V+W+E + +YL NP KYIPGT M F GLKK +DR DLI YLK++T
Sbjct: 62 VLWDENNMSEYLTNPAKYIPGTAMAFGGLKKEKDRNDLITYLKKAT 107
>pdb|1CSU|A Chain A, Replacements In A Conserved Leucine Cluster In The
Hydrophobic Heme Pocket Of Cytochrome C
Length = 108
Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 74/106 (69%)
Query: 6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
E G+ K G +FKT+C QCHTV KG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
V+W+E + +YL NP KYIPGTKM F G KK +DR DLI YLK++T
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMAFGGCKKEKDRNDLITYLKKAT 107
>pdb|1CHJ|A Chain A, Structural Studies Of The Roles Of Residues 82 And 85 At
The Interactive Face Of Cytochrome C
Length = 108
Score = 130 bits (326), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 74/106 (69%)
Query: 6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
E G+ K G +FKT+C QCHTV KG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
V+W+E + +YL NP KYIPGTKM F G KK +DR DLI YLK++T
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMAFGGAKKEKDRNDLITYLKKAT 107
>pdb|1CSX|A Chain A, Replacements In A Conserved Leucine Cluster In The
Hydrophobic Heme Pocket Of Cytochrome C
Length = 108
Score = 130 bits (326), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 74/106 (69%)
Query: 6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
E G+ K G +FKT+C QCHTV KG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
V+W+E + +YL NP KYIPGTKM F GLKK +DR D I YLK++T
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDSITYLKKAT 107
>pdb|2B0Z|B Chain B, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
Length = 108
Score = 130 bits (326), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 74/105 (70%)
Query: 6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
E G+ K G +FKT+C QCHTV KG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110
V+W+E + +YL NPKKYIPGTKM GLKK +DR DLI YLK++
Sbjct: 62 VLWDENNMSEYLTNPKKYIPGTKMAIGGLKKEKDRNDLITYLKKA 106
>pdb|2LIR|A Chain A, Nmr Solution Structure Of Yeast Iso-1-Cytochrome C Mutant
P71h In Oxidized States
pdb|2LIT|A Chain A, Nmr Solution Structure Of Yeast Iso-1-Cytochrome C Mutant
P71h In Reduced States
Length = 108
Score = 130 bits (326), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 74/106 (69%)
Query: 6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
E G+ K G +FKT+C QCHTV KG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
V+W+E + +YL N KYIPGTKM F GLKK +DR DLI YLK++T
Sbjct: 62 VLWDENNMSEYLTNHAKYIPGTKMAFGGLKKEKDRNDLITYLKKAT 107
>pdb|1IRW|A Chain A, Cytochrome C Isozyme 1, Reduced, Mutant With Asn 52
Replaced By Ala And Cys 102 Replaced By Thr
Length = 108
Score = 129 bits (324), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 74/106 (69%)
Query: 6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
E G+ K G +FKT+C QCHTV KG HK GPNL+G+FGR SG GYSY+ A
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDAAIKKN 61
Query: 66 VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
V+W+E + +YL NP KYIPGTKM F GLKK +DR DLI YLK++T
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKAT 107
>pdb|2B10|B Chain B, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|D Chain D, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
Length = 108
Score = 129 bits (324), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 74/105 (70%)
Query: 6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
E G+ K G +FKT+C QCHTV KG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110
V+W+E + +YL NPKKYIPGTKM GLKK +DR DLI YLK++
Sbjct: 62 VLWDENNMSEYLTNPKKYIPGTKMASGGLKKEKDRNDLITYLKKA 106
>pdb|1CRG|A Chain A, The Role Of A Conserved Internal Water Molecule And Its
Associated Hydrogen Bond Network In Cytochrome C
Length = 108
Score = 129 bits (323), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 74/106 (69%)
Query: 6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
E G+ K G +FKT+C QCHTV KG HK GPNL+G+FGR SG GYSY+ A
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDAIIKKN 61
Query: 66 VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
V+W+E + +YL NP KYIPGTKM F GLKK +DR DLI YLK++T
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKAT 107
>pdb|1CHI|A Chain A, Structural Studies Of The Roles Of Residues 82 And 85 At
The Interactive Face Of Cytochrome C
Length = 108
Score = 129 bits (323), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 60/106 (56%), Positives = 74/106 (69%)
Query: 6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
E G+ K G +FKT+C QCHTV KG HK GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
V+W+E + +YL NP KYIPGTKM + G KK +DR DLI YLK++T
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMAYGGAKKEKDRNDLITYLKKAT 107
>pdb|1RAQ|A Chain A, The Structure And Function Of Omega Loop A Replacements In
Cytochrome C
Length = 108
Score = 128 bits (322), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 59/105 (56%), Positives = 74/105 (70%)
Query: 6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
E G+ K G +FKT+C QCHTV +G +K GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVDQGGANKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110
V+W+E + +YL NP KYIPGTKM F GLKK +DR DLI YLK++
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKA 106
>pdb|1CRI|A Chain A, The Role Of A Conserved Internal Water Molecule And Its
Associated Hydrogen Bond Network In Cytochrome C
pdb|1CRJ|A Chain A, The Role Of A Conserved Internal Water Molecule And Its
Associated Hydrogen Bond Network In Cytochrome C
Length = 108
Score = 127 bits (320), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 60/106 (56%), Positives = 74/106 (69%)
Query: 6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
E G+ K G +FKT+C QCHTV KG HK GPNL+G+FGR SG GYSY+ A
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDAIIKKN 61
Query: 66 VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
V+W+E + ++L NP KYIPGTKM F GLKK +DR DLI YLK++T
Sbjct: 62 VLWDENNMSEFLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKAT 107
>pdb|1CRH|A Chain A, The Role Of A Conserved Internal Water Molecule And Its
Associated Hydrogen Bond Network In Cytochrome C
Length = 108
Score = 127 bits (318), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 60/105 (57%), Positives = 73/105 (69%)
Query: 6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
E G+ K G +FKT+C QCHTV KG HK GPNL+G+FGR SG GYSY+ A
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDAIIKKN 61
Query: 66 VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110
V+W+E + +YL NP KYIPGTKM F GLKK +DR DLI YLK++
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKA 106
>pdb|1RAP|A Chain A, The Structure And Function Of Omega Loop A Replacements In
Cytochrome C
Length = 108
Score = 126 bits (317), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 58/105 (55%), Positives = 73/105 (69%)
Query: 6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
E G+ K G +FKT+C QCHT +G +K GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTFDQGGANKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66 VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110
V+W+E + +YL NP KYIPGTKM F GLKK +DR DLI YLK++
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKA 106
>pdb|3CXH|W Chain W, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|1YEA|A Chain A, Structure Determination And Analysis Of Yeast Iso-2-
Cytochrome C And A Composite Mutant Protein
Length = 112
Score = 125 bits (314), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 56/99 (56%), Positives = 71/99 (71%)
Query: 9 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIW 68
PG+ K G +FKT+C QCHT+ +G +K GPNL+G+FGR SG GYSY+ AN V W
Sbjct: 9 PGSAKKGATLFKTRCQQCHTIEEGGPNKVGPNLHGIFGRHSGQVKGYSYTDANINKNVKW 68
Query: 69 EEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYL 107
+E ++ +YL NP KYIPGTKM F GLKK +DR DLI Y+
Sbjct: 69 DEDSMSEYLTNPXKYIPGTKMAFAGLKKEKDRNDLITYM 107
>pdb|1YEB|A Chain A, Structure Determination And Analysis Of Yeast Iso-2-
Cytochrome C And A Composite Mutant Protein
Length = 108
Score = 125 bits (314), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 58/105 (55%), Positives = 74/105 (70%)
Query: 6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
E G+ K G +FKT+C QCHT+ +G +K GPNL+G+FGR SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCQQCHTIEEGGPNKVGPNLHGIFGRHSGQVKGYSYTDANINKN 61
Query: 66 VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110
V W+E ++ +YL NP KYIPGTKM F GLKK +DR DLI YLK++
Sbjct: 62 VKWDEDSMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKA 106
>pdb|1CIF|A Chain A, Structural And Functional Effects Of Multiple Mutations At
Distal Sites In Cytochrome C
Length = 108
Score = 124 bits (311), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/105 (56%), Positives = 72/105 (68%)
Query: 6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
E G+ K G +FKT+C QCHTV KG HK GPNL+G+FG SG GYSY+ AN
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGAHSGQAEGYSYTDANIKKN 61
Query: 66 VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110
V+W+E + +YL NP KYIPGTKM GLKK +DR DLI YLK++
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMASGGLKKEKDRNDLITYLKKA 106
>pdb|1CIG|A Chain A, Structural And Functional Effects Of Multiple Mutations At
Distal Sites In Cytochrome C
Length = 108
Score = 124 bits (311), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/105 (56%), Positives = 72/105 (68%)
Query: 6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
E G+ K G +FKT+C QCHTV KG HK GPNL+G+FG SG GYSY+ A
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGAHSGQAEGYSYTDAIIKKN 61
Query: 66 VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110
V+W+E + +YL NP KYIPGTKM F GLKK +DR DLI YLK++
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKA 106
>pdb|1CIE|A Chain A, Structural And Functional Effects Of Multiple Mutations At
Distal Sites In Cytochrome C
Length = 108
Score = 124 bits (310), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/105 (56%), Positives = 72/105 (68%)
Query: 6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
E G+ K G +FKT+C QCHTV KG HK GPNL+G+FGR SG GYSY+ A
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDAIIKKN 61
Query: 66 VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110
V+W+E + +YL NP KYIPGTKM GLKK +DR DLI YLK++
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMASGGLKKEKDRNDLITYLKKA 106
>pdb|1YTC|A Chain A, Thermodynamic Cycles As Probes Of Structure-Function
Relationships In Unfolded Proteins
Length = 112
Score = 122 bits (305), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 70/99 (70%)
Query: 9 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIW 68
PG+ K G +FKT+C QCHT+ +G +K GPNL+G+FGR SG GYSY+ A V W
Sbjct: 9 PGSAKKGATLFKTRCQQCHTIEEGGPNKVGPNLHGIFGRHSGQVKGYSYTDAIINKNVKW 68
Query: 69 EEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYL 107
+E ++ +YL NP KYIPGTKM F GLKK +DR DLI Y+
Sbjct: 69 DEDSMSEYLTNPXKYIPGTKMAFAGLKKEKDRNDLITYM 107
>pdb|1CIH|A Chain A, Structural And Functional Effects Of Multiple Mutations At
Distal Sites In Cytochrome C
Length = 108
Score = 120 bits (302), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/105 (55%), Positives = 71/105 (67%)
Query: 6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
E G+ K G +FKT+C QCHTV KG HK GPNL+G+FG SG GYSY+ A
Sbjct: 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGAHSGQAEGYSYTDAIIKKN 61
Query: 66 VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110
V+W+E + +YL NP KYIPGTKM GLKK +DR DLI YLK++
Sbjct: 62 VLWDENNMSEYLTNPXKYIPGTKMASGGLKKEKDRNDLITYLKKA 106
>pdb|2YK3|A Chain A, Crithidia Fasciculata Cytochrome C
pdb|2YK3|B Chain B, Crithidia Fasciculata Cytochrome C
pdb|2YK3|C Chain C, Crithidia Fasciculata Cytochrome C
Length = 114
Score = 120 bits (302), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/101 (56%), Positives = 70/101 (69%)
Query: 8 PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVI 67
PPG+ GEK+FK + AQCHT +G + GPNL GL GR SGT GY+YS AN V+
Sbjct: 10 PPGDAARGEKLFKGRAAQCHTANQGGANGVGPNLYGLVGRHSGTIEGYAYSKANAESGVV 69
Query: 68 WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 108
W L YL NP K++PGTKM F G+KKPQ+RAD+IAYL+
Sbjct: 70 WTPDVLDVYLENPXKFMPGTKMSFAGMKKPQERADVIAYLE 110
>pdb|4DY9|A Chain A, Leishmania Major Peroxidase Is A Cytochrome C Peroxidase
pdb|4GED|B Chain B, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 113
Score = 118 bits (295), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 56/101 (55%), Positives = 71/101 (70%)
Query: 8 PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVI 67
PPG+ + GEK+FK + AQCHT KG + GPNL G+ R SG G++YS AN VI
Sbjct: 10 PPGDVERGEKLFKGRAAQCHTATKGGSNGVGPNLFGIVNRPSGKVEGFTYSKANAESGVI 69
Query: 68 WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 108
W + L YL NPKK++PGTKM F G+KKPQ+RAD+IAYL+
Sbjct: 70 WTPEVLDVYLENPKKFMPGTKMSFAGIKKPQERADVIAYLE 110
>pdb|1HRO|A Chain A, Molecular Structure Of A High Potential Cytochrome C2
Isolated From Rhodopila Globiformis
pdb|1HRO|B Chain B, Molecular Structure Of A High Potential Cytochrome C2
Isolated From Rhodopila Globiformis
Length = 106
Score = 112 bits (280), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 70/102 (68%), Gaps = 1/102 (0%)
Query: 7 APPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAV 66
APPG+P G+ +F T C CHT +KGA +K GP+L G+ GR SG PGY+YS AN +
Sbjct: 3 APPGDPVEGKHLFHTICITCHTDIKGA-NKVGPSLYGVVGRHSGIEPGYNYSEANIKSGI 61
Query: 67 IWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 108
+W L+ Y+ +P+K +PGTKM +PG PQ RAD+IAYL+
Sbjct: 62 VWTPDVLFKYIEHPQKIVPGTKMGYPGQPDPQKRADIIAYLE 103
>pdb|1CO6|A Chain A, Crystal Structure Of Ferrocytochrome C2 From
Rhodopseudomonas Viridis
pdb|1IO3|A Chain A, Crystal Structure Of Ferricytochrome C2 From
Rhodopseudomonas Viridis
pdb|1CRY|A Chain A, Application Of An Automatic Molecular Replacement
Procedure To Crystal Structure Of Cytochrome C2 From
Rhodopseudomonas Viridis
Length = 107
Score = 108 bits (271), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 50/99 (50%), Positives = 69/99 (69%), Gaps = 1/99 (1%)
Query: 14 AGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTL 73
+GE++FK +C CH++ GA +K GP LNGLFGR SGT G++YS ANK + W E+
Sbjct: 5 SGEQVFK-QCLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTEEVF 63
Query: 74 YDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
+Y+ +PK IPGTKM+F G+K Q +DLIAY+K+ A
Sbjct: 64 REYIRDPKAKIPGTKMIFAGVKDEQKVSDLIAYIKQFNA 102
>pdb|3M97|X Chain X, Structure Of The Soluble Domain Of Cytochrome C552 With
Its Flexible Linker Segment From Paracoccus
Denitrificans
Length = 140
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 58/98 (59%), Gaps = 3/98 (3%)
Query: 11 NPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEE 70
+P AGEK+F KC CH + G GP+LNG+ GR G++YS K W
Sbjct: 43 DPAAGEKVFG-KCKACHKLDGNDG--VGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTP 99
Query: 71 KTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 108
+ L ++L NPK + GTKM F GL K +DRA+LIAYL+
Sbjct: 100 EALQEFLTNPKAVVKGTKMAFAGLPKIEDRANLIAYLE 137
>pdb|1QL3|A Chain A, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Reduced State
pdb|1QL3|B Chain B, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Reduced State
pdb|1QL3|C Chain C, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Reduced State
pdb|1QL3|D Chain D, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Reduced State
pdb|1QL4|A Chain A, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Oxidised State
pdb|1QL4|B Chain B, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Oxidised State
pdb|1QL4|C Chain C, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Oxidised State
pdb|1QL4|D Chain D, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Oxidised State
Length = 99
Score = 82.0 bits (201), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 58/98 (59%), Gaps = 3/98 (3%)
Query: 11 NPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEE 70
+P AGEK+F KC CH + G GP+LNG+ GR G++YS K W
Sbjct: 2 DPAAGEKVF-GKCKACHKLDGNDG--VGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTP 58
Query: 71 KTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 108
+ L ++L NPK + GTKM F GL K +DRA+LIAYL+
Sbjct: 59 EALQEFLTNPKAVVKGTKMAFAGLPKIEDRANLIAYLE 96
>pdb|1C7M|A Chain A, Solution Structure Of The Functional Domain Of Paracoccus
Denitrificans Cytochrome C552 In The Reduced State
pdb|1I6D|A Chain A, Solution Structure Of The Functional Domain Of Paracoccus
Denitrificans Cytochrome C552 In The Reduced State
pdb|1I6E|A Chain A, Solution Structure Of The Functional Domain Of Paracoccus
Denitrificans Cytochrome C552 In The Oxidized State
Length = 100
Score = 82.0 bits (201), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 58/98 (59%), Gaps = 3/98 (3%)
Query: 11 NPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEE 70
+P AGEK+F KC CH + G GP+LNG+ GR G++YS K W
Sbjct: 3 DPAAGEKVF-GKCKACHKLDGNDG--VGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTP 59
Query: 71 KTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 108
+ L ++L NPK + GTKM F GL K +DRA+LIAYL+
Sbjct: 60 EALQEFLTNPKAVVKGTKMAFAGLPKIEDRANLIAYLE 97
>pdb|1QN2|A Chain A, Cytochrome Ch From Methylobacterium Extorquens
pdb|1QN2|B Chain B, Cytochrome Ch From Methylobacterium Extorquens
pdb|1QN2|C Chain C, Cytochrome Ch From Methylobacterium Extorquens
Length = 100
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 5/100 (5%)
Query: 10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGT-TPGYSYSAANKGMAVIW 68
G+ AGEK F C CH K + GP L G+ G ++G GY++S A K + W
Sbjct: 2 GDAAAGEKAF-APCKACHNFEK---NGVGPTLKGVVGAKAGEGADGYAFSDALKKSGLTW 57
Query: 69 EEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 108
++ L +L +PKK +PGTKMVFPG+ P+ D+IAYLK
Sbjct: 58 DQADLKQWLADPKKKVPGTKMVFPGISDPKKVDDIIAYLK 97
>pdb|1JDL|A Chain A, Structure Of Cytochrome C2 From Rhodospirillum Centenum
Length = 121
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 60/117 (51%), Gaps = 19/117 (16%)
Query: 10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKG---MAV 66
G+P GE +FK KC CH V A + GP L G+ RQ+GT PG++YSA N +
Sbjct: 3 GDPAKGEAVFK-KCMACHRVGPDAKNLVGPALTGVIDRQAGTAPGFNYSAINHAAGEAGL 61
Query: 67 IWEEKTLYDYLLNPKKYIP--------------GTKMVFPGLKKPQDRADLIAYLKE 109
W + + YL +P ++ TKMVF L Q+R D++AYLK+
Sbjct: 62 HWTPENIIAYLPDPNAFLRKFLADAGHAEQAKGSTKMVFK-LPDEQERKDVVAYLKQ 117
>pdb|2C2C|A Chain A, Refinement Of The Crystal Structure Of Oxidized
Rhodospirillum Rubrum Cytochrome C2
pdb|3C2C|A Chain A, Refinement Of The Crystal Structure Of Oxidized
Rhodospirillum Rubrum Cytochrome C2
Length = 112
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 13/110 (11%)
Query: 10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA---NKGMAV 66
G+ AGEK+ K KC CHT +G +K GPNL G+F + Y+YS + K +
Sbjct: 2 GDAAAGEKVSK-KCLACHTFDQGGANKVGPNLFGVFENTAAHKDNYAYSESYTEMKAKGL 60
Query: 67 IWEEKTLYDYLLNPKKYI--------PGTKMVFPGLKKPQDRADLIAYLK 108
W E L Y+ NPK ++ +KM F L K + ++IAYLK
Sbjct: 61 TWTEANLAAYVKNPKAFVLEKSGDPKAKSKMTFK-LTKDDEIENVIAYLK 109
>pdb|1HH7|A Chain A, Refined Crystal Structure Of Cytochrome C2 From
Rhodopseudomonas Palustris At 1.4 Angstrom Resolution
pdb|1I8O|A Chain A, Rhodopseudomonas Palustris Cyt C2 Ammonia Complex At 1.15
Angstrom Resolution
pdb|1I8P|A Chain A, Structure Determination Of The Ferrocytochrome C2 From
Rhodopseudomonas Palustris
pdb|1I8P|B Chain B, Structure Determination Of The Ferrocytochrome C2 From
Rhodopseudomonas Palustris
pdb|1I8P|C Chain C, Structure Determination Of The Ferrocytochrome C2 From
Rhodopseudomonas Palustris
pdb|1I8P|D Chain D, Structure Determination Of The Ferrocytochrome C2 From
Rhodopseudomonas Palustris
pdb|1FJ0|A Chain A, Structure Determination Of The Ferricytochrome C2 From
Rhodopseudomonas Palustris
pdb|1FJ0|B Chain B, Structure Determination Of The Ferricytochrome C2 From
Rhodopseudomonas Palustris
pdb|1FJ0|C Chain C, Structure Determination Of The Ferricytochrome C2 From
Rhodopseudomonas Palustris
pdb|1FJ0|D Chain D, Structure Determination Of The Ferricytochrome C2 From
Rhodopseudomonas Palustris
Length = 114
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 22/114 (19%)
Query: 11 NPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKG---MAVI 67
+ KAGE +FK +C CH K + GP L G+ GR++GT G++YS N ++
Sbjct: 2 DAKAGEAVFK-QCMTCHRADK---NMVGPALAGVVGRKAGTAAGFTYSPLNHNSGEAGLV 57
Query: 68 WEEKTLYDYLLNPKKYIPG--------------TKMVFPGLKKPQDRADLIAYL 107
W + YL +P ++ TKM F L Q R D++AYL
Sbjct: 58 WTADNIVPYLADPNAFLKKFLTEKGKADQAVGVTKMTFK-LANEQQRKDVVAYL 110
>pdb|2CXB|A Chain A, Crystallization And X-Ray Structure Determination Of
Cytochrome C2 From Rhodobacter Sphaeroides In Three
Crystal Forms
pdb|2CXB|B Chain B, Crystallization And X-Ray Structure Determination Of
Cytochrome C2 From Rhodobacter Sphaeroides In Three
Crystal Forms
pdb|1L9B|C Chain C, X-ray Structure Of The Cytochrome-c(2)-photosynthetic
Reaction Center Electron Transfer Complex From
Rhodobacter Sphaeroides In Type Ii Co- Crystals
pdb|1L9J|C Chain C, X-Ray Structure Of The Cytochrome-C(2)-Photosynthetic
Reaction Center Electron Transfer Complex From
Rhodobacter Sphaeroides In Type I Co- Crystals
pdb|1L9J|D Chain D, X-Ray Structure Of The Cytochrome-C(2)-Photosynthetic
Reaction Center Electron Transfer Complex From
Rhodobacter Sphaeroides In Type I Co- Crystals
pdb|1CXA|A Chain A, Crystallization And X-Ray Structure Determination Of
Cytochrome C2 From Rhodobacter Sphaeroides In Three
Crystal Forms
pdb|1CXC|A Chain A, Crystallization And X-Ray Structure Determination Of
Cytochrome C2 From Rhodobacter Sphaeroides In Three
Crystal Forms
Length = 124
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 25/121 (20%)
Query: 10 GNPKAGEKIFKTKCAQCHTVVKGAG-------HKQGPNLNGLFGRQSGTTPGYS------ 56
G+P+AG K F +C CH +V +G K GPNL G+ GR +GT +
Sbjct: 3 GDPEAGAKAF-NQCQTCHVIVDDSGTTIAGRNAKTGPNLYGVVGRTAGTQADFKGYGEGM 61
Query: 57 YSAANKGMAVIWEEKTLYDYLLNPKKYI--------PGTKMVFPGLKKPQDRADLIAYLK 108
A KG+A W+E+ Y+ +P K++ KM F LKK D ++ AYL+
Sbjct: 62 KEAGAKGLA--WDEEHFVQYVQDPTKFLKEYTGDAKAKGKMTFK-LKKEADAHNIWAYLQ 118
Query: 109 E 109
+
Sbjct: 119 Q 119
>pdb|2BGV|X Chain X, X-Ray Structure Of Ferric Cytochrome C-550 From Paracoccus
Versutus
Length = 134
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 27/123 (21%)
Query: 10 GNPKAGEKIFKTKCAQCHTV--------VKGAGHKQGPNLNGLFGRQSGTTPGYSY---- 57
G+ GEK F KC CH V VKG K GPNL G+ GR+ + G+ Y
Sbjct: 3 GDAAKGEKEF-NKCKACHMVQAPDGTDIVKGG--KTGPNLYGVVGRKIASVEGFKYGDGI 59
Query: 58 -SAANKGMAVIWEEKTLYDYLLNPKKYI--------PGTKMVFPGLKKPQDRADLIAYLK 108
A K ++W E L +Y+ +PK ++ TKM F K +++AD++A+L
Sbjct: 60 LEVAEKNPDMVWSEADLIEYVTDPKPWLVEKTGDSAAKTKMTF---KLGKNQADVVAFLA 116
Query: 109 EST 111
+ +
Sbjct: 117 QHS 119
>pdb|1COT|A Chain A, X-Ray Structure Of The Cytochrome C2 Isolated From
Paracoccus Denitrificans Refined To 1.7 Angstroms
Resolution
Length = 129
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 27/123 (21%)
Query: 10 GNPKAGEKIFKTKCAQCH--------TVVKGAGHKQGPNLNGLFGRQSGTTPGYSY---- 57
G+ GEK F KC CH ++KG K GPNL G+ GR+ + G+ Y
Sbjct: 3 GDAAKGEKEF-NKCKACHMIQAPDGTDIIKGG--KTGPNLYGVVGRKIASEEGFKYGEGI 59
Query: 58 -SAANKGMAVIWEEKTLYDYLLNPKKYI--------PGTKMVFPGLKKPQDRADLIAYLK 108
A K + W E L +Y+ +PK ++ TKM F K +++AD++A+L
Sbjct: 60 LEVAEKNPDLTWTEADLIEYVTDPKPWLVKMTDDKGAKTKMTF---KMGKNQADVVAFLA 116
Query: 109 EST 111
+++
Sbjct: 117 QNS 119
>pdb|2BH4|X Chain X, X-Ray Structure Of The M100k Variant Of Ferric Cyt C-550
From Paracoccus Versutus Determined At 100 K.
pdb|2BH5|X Chain X, X-Ray Structure Of The M100k Variant Of Ferric Cyt C-550
From Paracoccus Versutus Determined At 295 K
Length = 134
Score = 52.0 bits (123), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 27/123 (21%)
Query: 10 GNPKAGEKIFKTKCAQCHTV--------VKGAGHKQGPNLNGLFGRQSGTTPGYSY---- 57
G+ GEK F KC CH V VKG K GPNL G+ GR+ + G+ Y
Sbjct: 3 GDAAKGEKEF-NKCKACHMVQAPDGTDIVKGG--KTGPNLYGVVGRKIASVEGFKYGDGI 59
Query: 58 -SAANKGMAVIWEEKTLYDYLLNPKKYI--------PGTKMVFPGLKKPQDRADLIAYLK 108
A K ++W E L +Y+ +PK ++ TK F K +++AD++A+L
Sbjct: 60 LEVAEKNPDMVWSEADLIEYVTDPKPWLVEKTGDSAAKTKKTF---KLGKNQADVVAFLA 116
Query: 109 EST 111
+ +
Sbjct: 117 QHS 119
>pdb|155C|A Chain A, The Structure Of Paracoccus Denitrificans Cytochrome C550
Length = 135
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 22/119 (18%)
Query: 10 GNPKAGEKIFKTKCAQCHTV-----VKGAGHKQGPNLNGLFGRQSGTTPGYSY-----SA 59
G+ GEK F KC CH + G K GPNL G+ GR+ + G+ Y
Sbjct: 4 GDAAKGEKEF-NKCKACHMIQAPDGTDIKGGKTGPNLYGVVGRKIASEEGFKYGEGILEV 62
Query: 60 ANKGMAVIWEEKTLYDYLLNPKKYI--------PGTKMVFPGLKKPQDRADLIAYLKES 110
A K + W E L +Y+ +PK + TKM F K +++AD++A+L +
Sbjct: 63 AEKNPDLTWTEANLIEYVTDPKPLVKKMTDDKGAKTKMTF---KMGKNQADVVAFLAQD 118
>pdb|1VYD|A Chain A, Crystal Structure Of Cytochrome C2 Mutant G95e
pdb|1VYD|B Chain B, Crystal Structure Of Cytochrome C2 Mutant G95e
Length = 116
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 22/117 (18%)
Query: 10 GNPKAGEKIFKTKCAQCHTV--------VKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN 61
G+ GEK F KC CH++ VKGA K GPNL G+ GR +GT P + Y +
Sbjct: 1 GDAAKGEKEF-NKCKTCHSIIAPDGTEIVKGA--KTGPNLYGVVGRTAGTYPEFKYKDSI 57
Query: 62 KGMAV---IWEEKTLYDYLLNPKKYI--------PGTKMVFPGLKKPQDRADLIAYL 107
+ W E+ + Y+ +P ++ T+M F K +D A +A +
Sbjct: 58 VALGASGFAWTEEDIATYVKDPGAFLKEKLDDKKAKTEMAFKLAKGGEDVAAYLASV 114
>pdb|1C2R|A Chain A, Molecular Structure Of Cytochrome C2 Isolated From
Rhodobacter Capsulatus Determined At 2.5 Angstroms
Resolution
pdb|1C2R|B Chain B, Molecular Structure Of Cytochrome C2 Isolated From
Rhodobacter Capsulatus Determined At 2.5 Angstroms
Resolution
Length = 116
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 14/86 (16%)
Query: 10 GNPKAGEKIFKTKCAQCHTV--------VKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN 61
G+ GEK F KC CH++ VKGA K GPNL G+ GR +GT P + Y +
Sbjct: 1 GDAAKGEKEF-NKCKTCHSIIAPDGTEIVKGA--KTGPNLYGVVGRTAGTYPEFKYKDSI 57
Query: 62 KGMAV---IWEEKTLYDYLLNPKKYI 84
+ W E+ + Y+ +P ++
Sbjct: 58 VALGASGFAWTEEDIATYVKDPGAFL 83
>pdb|1C2N|A Chain A, Cytochrome C2, Nmr, 20 Structures
Length = 137
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 14/81 (17%)
Query: 15 GEKIFKTKCAQCHTV--------VKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAV 66
GEK F KC CH++ VKGA K GPNL G+ GR +GT P + Y + +
Sbjct: 27 GEKEF-NKCKTCHSIIAPDGTEIVKGA--KTGPNLYGVVGRTAGTYPEFKYKDSIVALGA 83
Query: 67 ---IWEEKTLYDYLLNPKKYI 84
W E+ + Y+ +P ++
Sbjct: 84 SGFAWTEEDIATYVKDPGAFL 104
>pdb|2L4D|A Chain A, Cytochrome C Domain Of Pp3183 Protein From Pseudomonas
Putida
Length = 110
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 19/110 (17%)
Query: 10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQ------GPNLNGLFGRQSGTTPGYSYSAANKG 63
G+ +GE+IF+T+C+ CHTV G+ + GP+L G+ ++ ++
Sbjct: 1 GSFTSGEQIFRTRCSSCHTV----GNTEPGQPGIGPDLLGVTRQRDANWLVRWLKVPDQM 56
Query: 64 MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKK-PQDRADLIAYLKESTA 112
+A EK LL ++Y ++ P ++ + + LI+YL+E TA
Sbjct: 57 LA----EKDPLAMLLF-EQY---NRLAMPNMRLGDAEVSALISYLEEETA 98
>pdb|2YEV|B Chain B, Structure Of Caa3-Type Cytochrome Oxidase
pdb|2YEV|E Chain E, Structure Of Caa3-Type Cytochrome Oxidase
Length = 337
Score = 32.0 bits (71), Expect = 0.090, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 19/112 (16%)
Query: 4 FEEAPPGNP-----KAGEKIFKTKCAQCHTVVKGAGHKQ-GPNLNGLFGRQSGTTPGYSY 57
F EA +P + G+++F+ CA CH V + GP L GL+G ++ G
Sbjct: 223 FVEAAKASPAPVADERGQQVFQQNCAACHGVARSMPPAVIGPEL-GLWGNRTSLGAGIVE 281
Query: 58 SAANKGMAVIWEEKTLYDYLLNPKKYIPGTKMV-FPGLKKPQDRADLIAYLK 108
+ + L ++ +P PG KM FP L + +D L+ YL+
Sbjct: 282 NTP----------ENLKAWIRDPAGMKPGVKMPGFPQLSE-EDLDALVRYLE 322
>pdb|1F9B|A Chain A, Melanin Protein Interaction: X-Ray Structure Of The
Complex Of Mare Lactoferrin With Melanin Monomers
Length = 695
Score = 31.2 bits (69), Expect = 0.16, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 18 IFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYL 77
I + A+C + +GP+++ + R++ + AANK AV + +Y+
Sbjct: 17 ISPAEAAKCAKFQRNMKKVRGPSVSCI--RKTSSFECIQAIAANKADAVTLDGGLVYEAG 74
Query: 78 LNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
L+P K P V+ KPQ R +A +K+ +
Sbjct: 75 LHPYKLRPVAAEVYQTRGKPQTRYYAVAVVKKGSG 109
>pdb|1B1X|A Chain A, Structure Of Diferric Mare Lactoferrin At 2.62a Resolution
pdb|1B7Z|A Chain A, Structure Of Oxalate Substituted Diferric Mare Lactoferrin
From Colostrum
pdb|1B7U|A Chain A, Structure Of Mare Apolactoferrin: The N And C Lobes Are In
The Closed Form
pdb|1QJM|A Chain A, Crystal Structure Of A Complex Of Lactoferrin With A
Lanthanide Ion (Sm3+) At 3.4 Anstrom Resolution
pdb|1I6B|A Chain A, Structure Of Equine Apolactoferrin At 3.2 A Resolution
Using Crystals Grown At 303k
pdb|3CR9|A Chain A, Crystal Structure Of The Complex Of Lactoferrin With 6-
(Hydroxymethyl)oxane-2,3,4,5-Tetrol At 3.49 A Resolution
Length = 689
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 24 AQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKY 83
A+C + +GP+++ + R++ + AANK AV + +Y+ L+P K
Sbjct: 17 AKCAKFQRNMKKVRGPSVSCI--RKTSSFECIQAIAANKADAVTLDGGLVYEAGLHPYKL 74
Query: 84 IPGTKMVFPGLKKPQDRADLIAYLKEST 111
P V+ KPQ R +A +K+ +
Sbjct: 75 RPVAAEVYQTRGKPQTRYYAVAVVKKGS 102
>pdb|1F1C|A Chain A, Crystal Structure Of Cytochrome C549
pdb|1F1C|B Chain B, Crystal Structure Of Cytochrome C549
Length = 129
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 15/71 (21%)
Query: 13 KAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKT 72
K G+++F CAQCH + + P++N + TP AA
Sbjct: 25 KKGQQVFNAACAQCHAL---GVTRTNPDVNLSPEALALATPPRDNIAA------------ 69
Query: 73 LYDYLLNPKKY 83
L DY+ NP Y
Sbjct: 70 LVDYIKNPTTY 80
>pdb|3DMI|A Chain A, Crystallization And Structural Analysis Of Cytochrome C6
From The Diatom Phaeodactylum Tricornutum At 1.5 A
Resolution
Length = 88
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 10 GNPKAGEKIFKTKCAQCHT 28
G+ AGE+IF CA CH
Sbjct: 1 GDVGAGEQIFNANCAACHA 19
>pdb|1GDV|A Chain A, Crystal Structure Of Cytochrome C6 From Red Alga
Porphyra Yezoensis At 1.57 A Resolution
Length = 85
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 15 GEKIFKTKCAQCH 27
GEK+F CA CH
Sbjct: 6 GEKVFSANCAACH 18
>pdb|2C8S|A Chain A, Cytochrome Cl From Methylobacterium Extorquens
Length = 172
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 13 KAGEKIFKTKCAQCHTVVKGAGHKQGPNLN 42
+ GE +F T C+ CH + A K GP LN
Sbjct: 55 RNGESLFATSCSGCHGHL--AEGKLGPGLN 82
>pdb|2ZON|G Chain G, Crystal Structure Of Electron Transfer Complex Of
Nitrite Reductase With Cytochrome C
Length = 87
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 6 EAPPGNPKAGEKIFKTKCAQCHT 28
+AP AGEK++++ C CH
Sbjct: 3 DAPAQLDPAGEKLYRSACVVCHA 25
>pdb|1GM8|B Chain B, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
pdb|1GM7|B Chain B, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
pdb|1GKF|B Chain B, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
Length = 557
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 47 RQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDR---ADL 103
RQSG P K W+ K L + +NPK Y P + + PQ +DL
Sbjct: 199 RQSGHDPRLPVPGTGK-----WDWKGLLPFEMNPKVYNPQSGYIANWANSPQKDYPASDL 253
Query: 104 IAYL 107
A+L
Sbjct: 254 FAFL 257
>pdb|1FXH|B Chain B, Mutant Of Penicillin Acylase Impaired In Catalysis With
Phenylacetic Acid In The Active Site
pdb|1FXV|B Chain B, Penicillin Acylase Mutant Impaired In Catalysis With
Penicillin G In The Active Site
Length = 557
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 47 RQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDR---ADL 103
RQSG P K W+ K L + +NPK Y P + + PQ +DL
Sbjct: 199 RQSGHDPRLPVPGTGK-----WDWKGLLPFEMNPKVYNPQSGYIANWANSPQKDYPASDL 253
Query: 104 IAYL 107
A+L
Sbjct: 254 FAFL 257
>pdb|1E3A|B Chain B, A Slow Processing Precursor Penicillin Acylase From
Escherichia Coli
Length = 560
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 47 RQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDR---ADL 103
RQSG P K W+ K L + +NPK Y P + + PQ +DL
Sbjct: 202 RQSGHDPRLPVPGTGK-----WDWKGLLPFEMNPKVYNPQSGYIANWNNSPQKDYPASDL 256
Query: 104 IAYL 107
A+L
Sbjct: 257 FAFL 260
>pdb|1KEC|B Chain B, Penicillin Acylase Mutant With Phenyl Proprionic Acid
Length = 557
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 47 RQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDR---ADL 103
RQSG P K W+ K L + +NPK Y P + + PQ +DL
Sbjct: 199 RQSGHDPRLPVPGTGK-----WDWKGLLPFEMNPKVYNPQSGYIANWNNSPQKDYPASDL 253
Query: 104 IAYL 107
A+L
Sbjct: 254 FAFL 257
>pdb|1AI4|B Chain B, Penicillin Acylase Complexed With
3,4-Dihydroxyphenylacetic Acid
pdb|1AI5|B Chain B, Penicillin Acylase Complexed With M-Nitrophenylacetic Acid
pdb|1AI6|B Chain B, Penicillin Acylase With P-Hydroxyphenylacetic Acid
pdb|1AI7|B Chain B, Penicillin Acylase Complexed With Phenol
pdb|1AJN|B Chain B, Penicillin Acylase Complexed With P-Nitrophenylacetic Acid
pdb|1AJP|B Chain B, Penicillin Acylase Complexed With
2,5-Dihydroxyphenylacetic Acid
pdb|1AJQ|B Chain B, Penicillin Acylase Complexed With Thiopheneacetic Acid
Length = 557
Score = 25.0 bits (53), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 47 RQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDR---ADL 103
RQSG P K W+ K L + +NPK Y P + + PQ +DL
Sbjct: 199 RQSGHDPRLPVPGTGK-----WDWKGLLPFEMNPKVYNPQSGYIANWNNSPQKDYPASDL 253
Query: 104 IAYL 107
A+L
Sbjct: 254 FAFL 257
>pdb|1PNK|B Chain B, Penicillin Acylase Has A Single-amino-acid Catalytic
Centre
pdb|1PNL|B Chain B, Penicillin Acylase Has A Single-amino-acid Catalytic
Centre
pdb|1PNM|B Chain B, Penicillin Acylase Has A Single-Amino-Acid Catalytic
Centre
pdb|1GM9|B Chain B, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
pdb|1GK9|B Chain B, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
pdb|1K7D|B Chain B, Penicillin Acylase With Phenyl Proprionic Acid
Length = 557
Score = 25.0 bits (53), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 47 RQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDR---ADL 103
RQSG P K W+ K L + +NPK Y P + + PQ +DL
Sbjct: 199 RQSGHDPRLPVPGTGK-----WDWKGLLPFEMNPKVYNPQSGYIANWNNSPQKDYPASDL 253
Query: 104 IAYL 107
A+L
Sbjct: 254 FAFL 257
>pdb|1JX9|B Chain B, Penicillin Acylase, Mutant
pdb|1K5Q|B Chain B, Penicillin Acylase, Mutant Complexed With Paa
pdb|1K5S|B Chain B, Penicillin Acylase, Mutant Complexed With Ppa
Length = 557
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 47 RQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDR---ADL 103
RQSG P K W+ K L + +NPK Y P + + PQ +DL
Sbjct: 199 RQSGHDPRLPVPGTGK-----WDWKGLLPFEMNPKVYNPQSGYIANWNNSPQKDYPASDL 253
Query: 104 IAYL 107
A+L
Sbjct: 254 FAFL 257
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,961,277
Number of Sequences: 62578
Number of extensions: 160882
Number of successful extensions: 312
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 225
Number of HSP's gapped (non-prelim): 91
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)