Query 033769
Match_columns 112
No_of_seqs 124 out of 1215
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 09:51:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033769.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033769hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ccr_A Cytochrome C; electron 100.0 2.3E-28 7.8E-33 148.5 9.5 108 5-112 5-112 (112)
2 1ycc_A Cytochrome C; electron 100.0 6.7E-28 2.3E-32 145.5 9.7 107 6-112 2-108 (108)
3 2w9k_A Cytochrome C, cytochrom 99.9 1.6E-27 5.3E-32 145.3 9.9 106 7-112 9-114 (114)
4 1i54_A Cytochrome C; zinc-porp 99.9 1.7E-27 5.9E-32 142.5 9.6 103 10-112 1-103 (103)
5 1hro_A Cytochrome C2; electron 99.9 3.3E-27 1.1E-31 142.1 8.2 104 7-111 3-106 (106)
6 3m97_X Cytochrome C-552, cytoc 99.9 3.3E-27 1.1E-31 148.7 8.2 101 8-111 40-140 (140)
7 1co6_A Protein (cytochrome C2) 99.9 7.7E-27 2.6E-31 140.8 8.8 102 10-112 1-102 (107)
8 1cxc_A Cytochrome C2; electron 99.9 3.5E-27 1.2E-31 146.1 6.7 102 9-112 2-122 (124)
9 2bh4_X Cytochrome C-550; C-typ 99.9 4.1E-27 1.4E-31 147.5 5.0 99 9-111 2-119 (134)
10 1vyd_A Cytochrome C2; electron 99.9 4.8E-27 1.7E-31 143.9 5.0 99 10-112 1-116 (116)
11 3c2c_A Cytochrome C2; electron 99.9 2E-26 7E-31 140.0 6.2 100 10-111 2-112 (112)
12 155c_A Cytochrome C550; electr 99.9 5.7E-26 2E-30 142.5 7.3 99 9-111 3-119 (135)
13 1qn2_A Cytochrome CH; electron 99.9 1E-25 3.6E-30 134.3 7.4 98 10-111 2-100 (100)
14 1jdl_A C552, cytochrome C2, IS 99.9 2.1E-25 7.2E-30 137.0 6.7 102 9-112 2-120 (121)
15 1c2n_A Cytochrome C2; electron 99.9 1.9E-25 6.6E-30 140.3 6.0 100 9-112 21-137 (137)
16 1i8o_A Cytochrome C2; electron 99.9 3.2E-24 1.1E-28 130.8 6.2 97 10-111 1-114 (114)
17 1w2l_A Cytochrome oxidase subu 99.8 4.5E-20 1.5E-24 109.1 8.4 92 9-111 3-99 (99)
18 2c1d_B SOXX; sulfur oxidation, 99.8 2E-19 6.9E-24 112.5 7.5 86 7-112 21-137 (137)
19 1h32_B Cytochrome C, SOXX; ele 99.8 3.1E-19 1.1E-23 111.7 6.8 86 7-112 22-138 (138)
20 2l4d_A SCO1/SENC family protei 99.8 1.5E-19 5.2E-24 108.6 4.2 80 10-111 1-97 (110)
21 1cno_A Cytochrome C552; electr 99.7 2.6E-19 9.1E-24 103.8 2.2 82 10-112 2-84 (87)
22 3o0r_C Nitric oxide reductase 99.7 4.9E-18 1.7E-22 107.0 6.4 88 8-112 45-134 (146)
23 1c75_A Cytochrome C-553; heme, 99.7 1E-17 3.6E-22 93.6 6.3 70 14-111 2-71 (71)
24 1c53_A Cytochrome C553; electr 99.7 8.8E-18 3E-22 95.8 5.1 72 14-110 2-79 (79)
25 2zzs_A Cytochrome C554; C-type 99.7 2.7E-18 9.4E-23 102.2 2.8 78 9-111 21-103 (103)
26 2exv_A Cytochrome C-551; alpha 99.7 5.8E-18 2E-22 96.9 3.6 78 14-111 2-82 (82)
27 2gc4_D Cytochrome C-L; electro 99.7 1.1E-16 3.7E-21 101.2 9.6 83 8-111 42-124 (147)
28 1cch_A Cytochrome C551; electr 99.7 1.1E-17 3.6E-22 95.7 4.3 78 14-111 2-82 (82)
29 3ph2_B Cytochrome C6; photosyn 99.7 1.7E-17 5.9E-22 95.4 5.1 81 10-111 2-82 (86)
30 2ce0_A Cytochrome C6; chloropl 99.7 6.1E-17 2.1E-21 96.5 7.6 86 9-111 2-95 (105)
31 1wve_C 4-cresol dehydrogenase 99.7 3.3E-17 1.1E-21 93.7 6.1 73 10-112 2-75 (80)
32 3cu4_A Cytochrome C family pro 99.7 1.8E-17 6.2E-22 95.5 5.0 82 9-111 2-84 (85)
33 1e29_A Cytochrome C549; electr 99.7 4.1E-18 1.4E-22 106.5 2.4 88 9-111 23-123 (135)
34 3cp5_A Cytochrome C; electron 99.7 6.5E-18 2.2E-22 103.6 3.2 80 8-111 30-121 (124)
35 1f1c_A Cytochrome C549; dimeri 99.7 2.2E-17 7.5E-22 101.8 5.1 87 9-111 21-121 (129)
36 3oa8_B SOXX; cytochrome, sulfu 99.7 1.6E-16 5.6E-21 105.5 9.1 87 6-111 92-203 (208)
37 1gdv_A Cytochrome C6; RED ALGA 99.7 1.4E-17 4.7E-22 95.7 3.2 81 10-111 1-81 (85)
38 3dmi_A Cytochrome C6; electron 99.7 3.6E-17 1.2E-21 94.5 4.8 83 10-111 1-83 (88)
39 1f1f_A Cytochrome C6; heme, pr 99.7 5.8E-17 2E-21 93.8 5.0 83 10-111 1-85 (89)
40 2d0s_A Cytochrome C, cytochrom 99.7 3.8E-17 1.3E-21 93.0 4.1 76 15-111 1-79 (79)
41 3dr0_A Cytochrome C6; photosyn 99.7 7.8E-17 2.7E-21 93.7 5.3 85 10-111 1-88 (93)
42 1a56_A C-551, ferricytochrome 99.7 1.8E-17 6.2E-22 94.7 2.2 78 15-111 1-81 (81)
43 1c6r_A Cytochrome C6; electron 99.7 2.3E-16 8E-21 91.3 6.7 82 10-111 2-84 (89)
44 2c8s_A Cytochrome C-L; HAEM, h 99.7 5.4E-16 1.8E-20 100.5 9.0 81 10-111 52-132 (172)
45 2d0w_A Cytochrome CL; electron 99.7 3.9E-16 1.3E-20 100.9 8.2 82 9-111 45-126 (170)
46 2zxy_A Cytochrome C552, cytoch 99.6 4.3E-17 1.5E-21 93.8 2.8 77 14-111 2-87 (87)
47 1cyi_A Cytochrome C6, cytochro 99.6 4.8E-16 1.7E-20 90.2 7.2 82 10-111 1-83 (90)
48 1ls9_A Cytochrome C6; omega lo 99.6 2.5E-16 8.7E-21 91.6 5.7 81 10-111 4-86 (91)
49 3dp5_A OMCF, cytochrome C fami 99.6 2.5E-16 8.4E-21 93.5 5.0 82 8-110 15-97 (99)
50 1ayg_A Cytochrome C-552; elect 99.6 1E-16 3.4E-21 91.5 3.0 76 17-111 3-80 (80)
51 2zon_G Cytochrome C551; nitrit 99.6 5.8E-17 2E-21 93.7 1.9 83 7-112 4-87 (87)
52 3mk7_C Cytochrome C oxidase, C 99.6 2.6E-15 8.9E-20 105.2 8.1 84 9-112 219-303 (311)
53 2yev_B Cytochrome C oxidase su 99.3 2.1E-16 7.2E-21 111.9 0.0 87 13-111 237-325 (337)
54 1c52_A Cytochrome-C552; electr 99.6 6.9E-16 2.3E-20 95.8 2.1 81 14-111 3-91 (131)
55 1w5c_T Cytochrome C-550; photo 99.6 1.1E-15 3.8E-20 98.0 3.2 87 9-111 49-149 (163)
56 1kx2_A Mono-heme C-type cytoch 99.5 1.1E-15 3.6E-20 87.6 1.9 78 11-111 2-81 (81)
57 1gks_A Cytochrome C551; haloph 99.5 2.4E-15 8.1E-20 85.5 3.3 73 14-110 1-77 (78)
58 1mz4_A Cytochrome C550; PSII a 99.5 2.2E-15 7.6E-20 94.0 3.3 85 9-111 23-123 (137)
59 1m70_A Cytochrome C4; electron 99.5 3.6E-15 1.2E-19 97.2 3.4 82 10-111 98-190 (190)
60 1kb0_A Quinohemoprotein alcoho 99.5 5.1E-15 1.8E-19 112.5 4.7 82 8-111 589-670 (677)
61 1h1o_A Cytochrome C-552; elect 99.5 3.3E-15 1.1E-19 96.8 2.8 79 7-110 95-183 (183)
62 3mk7_B Cytochrome C oxidase, C 99.5 1.8E-14 6.1E-19 94.4 4.7 82 10-111 51-196 (203)
63 1cc5_A Cytochrome C5; electron 99.5 9.6E-15 3.3E-19 84.0 1.6 79 11-110 3-83 (83)
64 2xts_B Cytochrome; oxidoreduct 99.4 3.2E-13 1.1E-17 89.7 8.2 88 9-111 32-121 (205)
65 1kv9_A Type II quinohemoprotei 99.4 3.6E-14 1.2E-18 107.7 3.9 79 10-111 578-656 (668)
66 1yiq_A Quinohemoprotein alcoho 99.4 6.1E-14 2.1E-18 106.8 4.8 78 10-111 593-670 (689)
67 1nir_A Nitrite reductase; hemo 99.4 5.8E-14 2E-18 104.3 3.4 78 9-111 33-113 (543)
68 3vrd_A FCCA subunit, flavocyto 99.4 6.7E-14 2.3E-18 90.6 2.7 85 7-111 85-174 (174)
69 3mk7_C Cytochrome C oxidase, C 99.4 1.7E-13 6E-18 95.9 4.8 79 11-111 131-210 (311)
70 1qks_A Cytochrome CD1 nitrite 99.4 1.4E-13 4.8E-18 103.0 4.3 78 10-111 52-131 (567)
71 1h1o_A Cytochrome C-552; elect 99.4 5.8E-14 2E-18 90.9 0.4 82 9-111 3-87 (183)
72 2zoo_A Probable nitrite reduct 99.4 2.9E-13 9.8E-18 98.5 3.9 80 11-111 338-425 (442)
73 3vrd_A FCCA subunit, flavocyto 99.3 2.9E-13 9.8E-18 87.6 2.7 71 17-111 5-77 (174)
74 1m70_A Cytochrome C4; electron 99.3 8.4E-13 2.9E-17 85.9 4.8 80 10-111 2-89 (190)
75 2blf_B SORB, sulfite\:cytochro 98.9 2E-09 6.8E-14 61.4 3.6 18 13-30 19-36 (81)
76 1zzh_A Cytochrome C peroxidase 98.8 1.1E-08 3.8E-13 72.1 7.5 38 65-111 266-303 (328)
77 3oa8_A SOXA; cytochrome, sulfu 98.8 4.5E-10 1.5E-14 77.5 -0.0 82 11-111 52-147 (275)
78 3o5c_A Cytochrome C551 peroxid 98.8 7E-09 2.4E-13 72.9 4.4 38 65-111 254-291 (320)
79 2c1v_A DI-HAEM cytochrome C pe 98.7 2E-08 7E-13 71.0 6.3 38 65-111 277-314 (338)
80 3a9f_A Cytochrome C; alpha hel 98.7 2.4E-09 8.1E-14 62.5 0.6 21 10-30 25-45 (92)
81 1nml_A DI-HAEM cytochrome C pe 98.7 5.8E-08 2E-12 68.4 7.7 38 65-111 263-300 (326)
82 4aan_A Cytochrome C551 peroxid 98.7 1.2E-08 4.2E-13 72.2 4.2 38 65-111 280-317 (341)
83 1h32_A SOXA, diheme cytochrome 98.7 1.5E-08 5.1E-13 69.3 4.6 85 10-112 157-250 (261)
84 1iqc_A DI-heme peroxidase; pro 98.7 1.5E-08 5.2E-13 70.9 4.1 22 9-30 168-190 (308)
85 2vhd_A Cytochrome C551 peroxid 98.7 3.3E-08 1.1E-12 69.6 5.7 19 93-111 282-300 (323)
86 2c1d_A SOXA; sulfur oxidation, 98.6 3.6E-08 1.2E-12 67.5 5.1 85 10-112 160-253 (264)
87 1e8e_A Cytochrome C''; oxidore 98.6 2.3E-08 7.8E-13 60.8 2.9 20 93-112 102-121 (124)
88 1dw0_A Cytochrome C; asparagin 98.6 4.5E-08 1.6E-12 58.7 4.1 82 9-110 19-112 (112)
89 1jmx_A Amine dehydrogenase; ox 98.5 1.8E-08 6.3E-13 73.4 1.6 66 13-111 2-68 (494)
90 3cx5_D Cytochrome C1, heme pro 98.5 4.9E-07 1.7E-11 61.2 8.3 22 9-30 26-47 (248)
91 3hq9_A Cytochrome C551 peroxid 98.5 7.3E-08 2.5E-12 68.3 4.2 19 93-111 304-322 (345)
92 3sjl_A Methylamine utilization 98.5 7.1E-07 2.4E-11 63.9 8.3 23 7-29 184-207 (373)
93 2yiu_B Cytochrome C1, heme pro 98.4 7.9E-07 2.7E-11 60.6 6.6 23 9-31 44-66 (263)
94 1pp9_D Cytochrome C-1, cytochr 98.4 1.9E-06 6.5E-11 58.1 8.4 23 9-31 23-45 (241)
95 3oa8_A SOXA; cytochrome, sulfu 98.4 2.7E-07 9.2E-12 63.6 4.0 88 11-112 164-264 (275)
96 2c1d_A SOXA; sulfur oxidation, 98.2 4.6E-07 1.6E-11 62.1 2.0 18 94-111 128-145 (264)
97 1pby_A Quinohemoprotein amine 98.1 2.1E-06 7.2E-11 62.6 3.1 18 14-31 2-19 (489)
98 1h32_A SOXA, diheme cytochrome 98.0 1.2E-06 4.2E-11 59.8 0.9 18 94-111 125-142 (261)
99 1zrt_D Cytochrome C1; cytochro 97.4 3.9E-05 1.3E-09 52.2 1.4 23 8-30 19-41 (258)
100 2qjy_B Cytochrome C1; cytochro 97.4 4.9E-05 1.7E-09 51.9 1.2 23 8-30 21-43 (269)
101 1zzh_A Cytochrome C peroxidase 97.2 0.0019 6.6E-08 45.4 7.6 24 8-31 30-62 (328)
102 1iqc_A DI-heme peroxidase; pro 97.1 0.0015 5.2E-08 45.5 6.4 18 94-111 133-150 (308)
103 2c1v_A DI-HAEM cytochrome C pe 97.0 0.0018 6.1E-08 45.8 6.0 21 10-30 43-72 (338)
104 1jmx_A Amine dehydrogenase; ox 96.8 0.00014 4.7E-09 53.4 -1.0 23 9-31 86-108 (494)
105 2vhd_A Cytochrome C551 peroxid 96.7 0.0052 1.8E-07 43.1 6.8 21 10-30 29-58 (323)
106 3o5c_A Cytochrome C551 peroxid 96.5 0.0068 2.3E-07 42.5 6.2 21 10-30 25-54 (320)
107 2fw5_A DHC, diheme cytochrome 96.0 0.014 4.6E-07 36.2 4.8 16 15-30 16-31 (139)
108 2fwt_A DHC, diheme cytochrome 95.9 0.024 8.2E-07 34.5 5.7 15 16-30 6-20 (125)
109 3u99_A Diheme cytochrome C; cy 94.0 0.18 6.2E-06 31.5 5.8 13 18-30 14-26 (148)
110 3hq9_A Cytochrome C551 peroxid 92.1 0.034 1.2E-06 39.4 0.5 22 10-31 51-81 (345)
111 1pby_A Quinohemoprotein amine 91.6 0.021 7.2E-07 41.9 -1.0 21 10-30 87-107 (489)
112 1nml_A DI-HAEM cytochrome C pe 90.9 0.065 2.2E-06 37.6 0.9 21 10-30 29-58 (326)
113 4aan_A Cytochrome C551 peroxid 86.2 0.17 5.9E-06 35.7 0.4 20 11-30 47-75 (341)
114 3sjl_A Methylamine utilization 85.0 0.2 6.8E-06 35.8 0.3 22 10-31 9-39 (373)
115 3b42_A GSU0935, methyl-accepti 73.3 1.1 3.9E-05 27.0 1.0 9 21-29 104-112 (135)
116 3b47_A GSU0582, methyl-accepti 70.0 1.3 4.4E-05 26.8 0.7 9 21-29 103-111 (134)
117 3ayf_A Nitric oxide reductase; 67.5 1 3.5E-05 35.4 -0.2 33 10-43 67-100 (800)
118 2czs_A DHC2, cytochrome C, put 58.4 4.2 0.00015 22.3 1.3 10 19-28 33-42 (80)
119 3oao_A Uncharacterized protein 53.1 8 0.00027 23.9 2.0 19 91-109 76-94 (147)
120 1ehj_A Cytochrome C7; multi-he 50.2 3.4 0.00012 22.0 0.0 15 15-29 40-55 (68)
121 1ogy_B Diheme cytochrome C NAP 50.2 10 0.00034 23.0 2.1 10 22-31 57-66 (130)
122 3h34_A Cytochrome C7, cytochro 46.2 3.6 0.00012 22.1 -0.3 15 16-30 43-57 (70)
123 2lky_A Uncharacterized protein 46.2 18 0.00061 21.3 2.7 17 93-109 39-55 (112)
124 2kvc_A Putative uncharacterize 45.9 18 0.00061 21.0 2.6 17 93-109 37-53 (103)
125 3h4n_A Cytochrome C7, cytochro 40.3 5 0.00017 21.5 -0.3 14 16-29 45-58 (72)
126 1ci3_M Protein (cytochrome F); 39.9 6.8 0.00023 26.1 0.2 8 22-29 20-27 (249)
127 1hcz_A Cytochrome F; electron 39.7 6.9 0.00023 26.1 0.2 8 22-29 20-27 (252)
128 1e2w_A Cytochrome F; electron 39.6 6.9 0.00024 26.1 0.2 8 22-29 20-27 (251)
129 1rwj_A Cytochrome C family pro 38.6 8.9 0.0003 21.1 0.6 12 17-28 53-65 (82)
130 4g1a_A AQ-C16C19 peptide; heli 37.6 13 0.00045 16.1 0.9 10 19-28 12-21 (32)
131 1oqe_K Tumor necrosis factor r 36.8 5.8 0.0002 17.6 -0.3 10 21-30 15-24 (31)
132 1vf5_C Cytochrome F; photosynt 36.2 8.4 0.00029 26.2 0.2 8 22-29 21-28 (289)
133 1m0f_B GPB, scaffolding protei 35.5 18 0.00062 18.9 1.4 18 11-28 14-33 (68)
134 2j7a_C Cytochrome C quinol deh 34.4 8.1 0.00028 23.8 -0.1 15 16-30 109-123 (159)
135 3h33_A Cytochrome C7, cytochro 34.0 6.2 0.00021 21.5 -0.6 14 16-29 43-57 (75)
136 2k3v_A Tetraheme cytochrome C- 33.6 14 0.00047 20.3 0.8 11 20-30 32-42 (86)
137 2je2_A Cytochrome P460; heme P 33.6 6.3 0.00022 25.3 -0.7 10 21-30 135-144 (186)
138 1al0_B Scaffolding protein GPB 33.5 11 0.00036 22.1 0.3 19 10-28 65-85 (120)
139 3ol3_A Putative uncharacterize 32.3 41 0.0014 19.6 2.7 18 92-109 41-58 (107)
140 2m0n_A Putative uncharacterize 31.8 41 0.0014 19.8 2.7 18 92-109 38-55 (112)
141 3bxu_A Cytochrome C3; multihem 31.7 11 0.00039 19.9 0.3 14 16-29 43-57 (71)
142 2c6a_A Ubiquitin-protein ligas 31.4 17 0.00058 17.8 0.8 11 21-31 28-38 (46)
143 2jxm_B Cytochrome F; copper, e 30.3 6.8 0.00023 26.1 -0.9 8 22-29 20-27 (249)
144 3cao_A Cytochrome C3; tetrahem 29.7 9.6 0.00033 21.7 -0.3 13 18-30 77-89 (103)
145 3r1f_A ESX-1 secretion-associa 28.2 44 0.0015 19.8 2.5 17 95-111 112-128 (135)
146 4fs3_A Enoyl-[acyl-carrier-pro 28.1 45 0.0015 21.7 2.8 19 91-109 217-235 (256)
147 1jni_A NAPB;, diheme cytochrom 27.0 15 0.00051 22.0 0.2 9 22-30 96-104 (123)
148 3v2d_4 50S ribosomal protein L 26.3 18 0.00061 19.5 0.4 10 21-30 34-43 (71)
149 4fgs_A Probable dehydrogenase 25.4 47 0.0016 22.3 2.5 20 90-109 234-253 (273)
150 3g27_A 82 prophage-derived unc 25.4 10 0.00035 21.7 -0.7 8 22-29 53-60 (96)
151 1vs6_Z 50S ribosomal protein L 25.3 19 0.00066 19.3 0.4 11 20-30 34-44 (70)
152 1sd4_A Penicillinase repressor 24.2 62 0.0021 18.2 2.6 18 94-111 107-124 (126)
153 1nkw_Y 50S ribosomal protein L 24.0 21 0.0007 19.3 0.4 10 21-30 34-43 (73)
154 4h15_A Short chain alcohol deh 23.6 54 0.0019 21.7 2.5 20 90-109 221-240 (261)
155 1rbl_M Ribulose 1,5 bisphospha 23.6 88 0.003 18.2 3.1 22 89-110 14-35 (109)
156 1m1q_A Small tetraheme cytochr 23.5 20 0.00068 19.7 0.3 9 22-30 14-22 (91)
157 1q90_A Apocytochrome F; membra 23.5 11 0.00037 25.7 -0.9 8 22-29 20-27 (292)
158 2ozy_A Cytochrome C-type prote 23.1 27 0.00092 21.3 0.9 10 20-29 85-94 (163)
159 3n9z_C Adrenodoxin; cytochrome 23.0 22 0.00075 21.0 0.4 8 22-29 50-57 (123)
160 4b79_A PA4098, probable short- 22.9 53 0.0018 21.7 2.4 20 90-109 203-222 (242)
161 1xv3_A Penaeidin-4D, PEN-4D; a 22.6 28 0.00097 17.0 0.7 8 23-30 23-30 (47)
162 3ubr_A Cytochrome C-552; DECA- 22.4 22 0.00076 26.0 0.4 9 22-30 167-175 (439)
163 1svd_M Ribulose bisphosphate c 22.3 1E+02 0.0034 18.0 3.2 22 89-110 16-37 (110)
164 1wdd_S Ribulose bisphosphate c 22.1 1.4E+02 0.0047 17.9 4.4 22 89-110 15-36 (128)
165 2es6_A VTS1P; SAM domain, prot 22.1 49 0.0017 19.1 1.8 18 93-110 24-41 (101)
166 1d4d_A Flavocytochrome C fumar 22.1 25 0.00085 26.1 0.6 9 22-30 15-23 (572)
167 3c0t_B Mediator of RNA polymer 22.1 63 0.0021 14.0 2.1 14 97-110 7-20 (33)
168 3ged_A Short-chain dehydrogena 21.9 77 0.0026 20.9 3.0 20 90-109 195-214 (247)
169 3ml1_B NAPB, diheme cytochrome 21.9 43 0.0015 20.4 1.6 9 22-30 98-106 (135)
170 1ft5_A Cytochrome C554; heme-s 21.9 26 0.00089 22.7 0.6 10 21-30 58-67 (211)
171 1oah_A Cytochrome C nitrite re 21.8 25 0.00086 26.2 0.6 9 22-30 187-195 (519)
172 1b0n_A Protein (SINR protein); 21.3 71 0.0024 17.4 2.4 17 94-110 89-105 (111)
173 3j20_O 30S ribosomal protein S 21.2 60 0.0021 20.0 2.2 17 93-109 52-68 (148)
174 2hfg_R Tumor necrosis factor r 20.9 15 0.00052 18.1 -0.5 10 21-30 27-36 (51)
175 1p0t_A Tumor necrosis factor r 20.8 18 0.00062 18.7 -0.2 10 21-30 30-39 (63)
No 1
>1ccr_A Cytochrome C; electron transport(cytochrome); HET: M3L HEM; 1.50A {Oryza sativa} SCOP: a.3.1.1
Probab=99.95 E-value=2.3e-28 Score=148.53 Aligned_cols=108 Identities=89% Similarity=1.447 Sum_probs=95.9
Q ss_pred CCCCCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCC
Q 033769 5 EEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYI 84 (112)
Q Consensus 5 ~~~~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 84 (112)
.+...+++++|++||.++|+.||+.++.+...++|+|.++..+..+..++|.|+..++..+..|+.++|.++|+++....
T Consensus 5 ~~~~~~~~~~G~~lf~~~C~~CHg~~g~g~~~~gP~L~~~~~r~~~~~~~~~y~~~~~~~~~~~~~~~l~~~i~~~~~~~ 84 (112)
T 1ccr_A 5 SEAPPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTADKNMAVIWEENTLYDYLLNPXKYI 84 (112)
T ss_dssp GGSCCCCHHHHHHHHHHHTTTTCCCSTTCCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHCCBCSHHHHHHHHHCHHHHS
T ss_pred hhcccccHHHHHHHHHhhcHHhCCCCCCCCCCCCCCccccccccccccCCccccHHHHhcCCccCHHHHHHHHhCccccC
Confidence 34667899999999998999999998765567899999998888888888999888888888999999999999987777
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhhcC
Q 033769 85 PGTKMVFPGLKKPQDRADLIAYLKESTA 112 (112)
Q Consensus 85 ~~~~m~~~~~l~~~ei~~l~ayl~sl~~ 112 (112)
+++||+|.++++++||++|++||++|++
T Consensus 85 ~g~~m~~~~~ls~~ei~~l~aYl~~l~~ 112 (112)
T 1ccr_A 85 PGTKMVFPGLXKPQERADLISYLKEATS 112 (112)
T ss_dssp TTCCCCCCCCCCHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 8899999888899999999999999874
No 2
>1ycc_A Cytochrome C; electron transport (cytochrome); HET: M3L HEM; 1.23A {Saccharomyces cerevisiae} SCOP: a.3.1.1 PDB: 1kyo_W* 3cx5_W* 2gb8_B* 2pcc_B* 2b12_B* 2jti_B* 2b11_B* 2b0z_B* 2bcn_B* 1u74_B* 2b10_B* 1yfc_A* 1yic_A* 1nmi_A* 2hv4_A* 2orl_A* 3tyi_A* 1crh_A* 2ycc_A* 1csw_A* ...
Probab=99.95 E-value=6.7e-28 Score=145.52 Aligned_cols=107 Identities=57% Similarity=1.027 Sum_probs=93.9
Q ss_pred CCCCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCC
Q 033769 6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIP 85 (112)
Q Consensus 6 ~~~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 85 (112)
++..+++.+|++||.++|+.||++++.+...+||+|.++..+..+..++|.|+..+...++.|+.++|..+|+++....|
T Consensus 2 ~~~~~~~~~G~~lf~~~C~~CH~~~g~g~~~~gP~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 81 (108)
T 1ycc_A 2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPXKYIP 81 (108)
T ss_dssp CCCCCCHHHHHHHHHHHTTTTCCCSTTCCCCSSCCCTTCTTSBTTCSTTCCCCHHHHHHCCBCCHHHHHHHHHCHHHHST
T ss_pred CcccccHHHHHHHHHhhCcccCCCCCCCCCCCCCChhhhccccccccccccccHHHHhcCcccCHHHHHHHHHChhhhcC
Confidence 35678999999999989999999987666678999999988888777888888777777889999999999999887778
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhcC
Q 033769 86 GTKMVFPGLKKPQDRADLIAYLKESTA 112 (112)
Q Consensus 86 ~~~m~~~~~l~~~ei~~l~ayl~sl~~ 112 (112)
++.|||.++++++||++|++||++|++
T Consensus 82 ~~~Mp~~~l~s~~ei~~l~aYl~sl~e 108 (108)
T 1ycc_A 82 GTKMAFGGLKKEKDRNDLITYLKKACE 108 (108)
T ss_dssp TCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_pred CcccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 888898887789999999999999975
No 3
>2w9k_A Cytochrome C, cytochrome C555; electron transport, intermembrane space, metal-binding, thioether bond, respiratory chain, trypanosome; HET: M3L HEC; 1.55A {Crithidia fasciculata} PDB: 2yk3_A* 4dy9_A*
Probab=99.95 E-value=1.6e-27 Score=145.30 Aligned_cols=106 Identities=54% Similarity=0.957 Sum_probs=94.4
Q ss_pred CCCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCC
Q 033769 7 APPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPG 86 (112)
Q Consensus 7 ~~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 86 (112)
...+++++|++||..+|+.||++++.+...++|+|.++.++..+..++|.|+..++..++.|+.++|..+|+++....++
T Consensus 9 ~~~~~~~~G~~lf~~~C~~CH~~~g~g~~~~gP~L~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~l~~~i~~p~~~~~g 88 (114)
T 2w9k_A 9 LPPGDAARGEKLFKGRAAQCHTANQGGANGVGPNLYGLVGRHSGTIEGYAYSKANAESGVVWTPDVLDVYLENPXKFMPG 88 (114)
T ss_dssp CCCCCHHHHHHHHHHHTTTTCCCSTTCCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHCCCBCCHHHHHHHHHCHHHHSTT
T ss_pred CCCccHHHHHHHHHhhchhhCCCCCCCCCCCCCCcccccCccccccccccccHhHHhcCCccCHHHHHHHHHchhhhcCC
Confidence 55688999999999899999999876556789999999988888888898888888888999999999999998777788
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhcC
Q 033769 87 TKMVFPGLKKPQDRADLIAYLKESTA 112 (112)
Q Consensus 87 ~~m~~~~~l~~~ei~~l~ayl~sl~~ 112 (112)
+.|+|.++++++||++|++||++|++
T Consensus 89 ~~Mp~~~~ls~~ei~~l~aYl~sl~~ 114 (114)
T 2w9k_A 89 TKMSFAGMKKPQERADVIAYLETLKG 114 (114)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHTCCC
T ss_pred CcccccccCCHHHHHHHHHHHHHccC
Confidence 88998888899999999999999864
No 4
>1i54_A Cytochrome C; zinc-porphyrin, mixed-metal, electron transport; HET: HEM ZNH; 1.50A {Thunnus thynnus} SCOP: a.3.1.1 PDB: 1i55_A* 1lfm_A* 5cyt_R* 3cyt_O* 1cyc_A* 2aiu_A* 2b4z_A* 2ybb_Y* 1akk_A* 1fi7_A* 1fi9_A* 1giw_A* 1i5t_A* 1lc1_A* 1lc2_A* 1m60_A* 1ocd_A* 1u75_B* 2frc_A* 2giw_A* ...
Probab=99.95 E-value=1.7e-27 Score=142.46 Aligned_cols=103 Identities=58% Similarity=1.066 Sum_probs=91.0
Q ss_pred CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033769 10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM 89 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m 89 (112)
+++++|++||..+|+.||++++.+...+||+|.++..+..+..++|.|+..++..++.|+.++|..+|+++....|++.|
T Consensus 1 gd~~~G~~lf~~~C~~CH~~~g~g~~~~gP~L~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~M 80 (103)
T 1i54_A 1 GDVAKGKKTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNNDTLMEYLENPKKYIPGTKM 80 (103)
T ss_dssp CCHHHHHHHHHHHTTTTCCCSTTCCCCSSCCCTTCTTSBTTCCTTCCCCHHHHHSCCBCSHHHHHHHHHCHHHHSTTCSC
T ss_pred CcHHHHHHHHHHhhHHhCCCCCCCCCCCCCCcccccCccccccCCccccHHHHhCCceECHHHHHHHHhCccccCCCCcC
Confidence 47889999999899999999876566789999999888888888888888888888899999999999999777788888
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcC
Q 033769 90 VFPGLKKPQDRADLIAYLKESTA 112 (112)
Q Consensus 90 ~~~~~l~~~ei~~l~ayl~sl~~ 112 (112)
||.++++++||++|++||++|++
T Consensus 81 p~~~l~~~~ei~~l~aYl~sl~~ 103 (103)
T 1i54_A 81 IFAGIKKKGERQDLVAYLKSATS 103 (103)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHCC
T ss_pred CccCCCCHHHHHHHHHHHHHhcC
Confidence 88777679999999999999875
No 5
>1hro_A Cytochrome C2; electron transport, photosynthesis, heme; HET: HEM; 2.20A {Rhodopila globiformis} SCOP: a.3.1.1
Probab=99.94 E-value=3.3e-27 Score=142.11 Aligned_cols=104 Identities=49% Similarity=1.000 Sum_probs=91.4
Q ss_pred CCCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCC
Q 033769 7 APPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPG 86 (112)
Q Consensus 7 ~~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 86 (112)
.+.+++++|++||.++|+.||+.++. +..+||+|.++..+..+..++|.|+..++..++.|+.++|..+|++|....++
T Consensus 3 ~~~~~~~~G~~lf~~~C~~CH~~~g~-~~~~gP~L~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~g 81 (106)
T 1hro_A 3 APPGDPVEGKHLFHTICITCHTDIKG-ANKVGPSLYGVVGRHSGIEPGYNYSEANIKSGIVWTPDVLFKYIEHPQKIVPG 81 (106)
T ss_dssp CCCCCHHHHHHHHTTTGGGTCCSSTT-CBSSSCCCTTCTTCBTTCSTTBCCCHHHHHHCCBCCHHHHHHHHHCHHHHSTT
T ss_pred cccccHHHHHHHHHcchhhhCCCCCC-CCCCCCCCCCccccccccCCCccccHHHHhcCcccCHHHHHHHHhCccccCCC
Confidence 45689999999999899999999854 35689999999888877778888888887788899999999999998777788
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769 87 TKMVFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 87 ~~m~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
+.|||.++++++||++|++||++|+
T Consensus 82 ~~Mp~~~~~~~~ei~~l~aYl~sl~ 106 (106)
T 1hro_A 82 TKMGYPGQPDPQKRADIIAYLETLK 106 (106)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcC
Confidence 8899888888999999999999874
No 6
>3m97_X Cytochrome C-552, cytochrome C552; electron transport chain (cytochrome), electron transfer, P. denitrificans, electron donor; HET: HEC; 1.33A {Paracoccus denitrificans} PDB: 1c7m_A* 1i6d_A* 1i6e_A* 1ql3_A* 1ql4_A*
Probab=99.94 E-value=3.3e-27 Score=148.68 Aligned_cols=101 Identities=43% Similarity=0.787 Sum_probs=92.3
Q ss_pred CCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCC
Q 033769 8 PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGT 87 (112)
Q Consensus 8 ~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 87 (112)
..+++.+|+++| ++|+.||+++ +...+||+|.++.+|..+..++|.|+..++..++.|+.++|.+||++|....|++
T Consensus 40 ~~~d~~~G~~lf-~~C~~CH~~~--~~~~~gP~L~gv~~r~~~~~~g~~Ys~al~~~g~~w~~e~L~~~I~~P~~~~pgt 116 (140)
T 3m97_X 40 ASADPAAGEKVF-GKCKACHKLD--GNDGVGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPEALQEFLTNPKAVVKGT 116 (140)
T ss_dssp HTCCHHHHHHHG-GGTTTTCCSS--SCCSSSCCCTTCTTCBTTCSTTCCCCHHHHHHCSBCCHHHHHHHHHCHHHHSTTC
T ss_pred cccCHHHHHHHH-HhhhhhcCCC--CCCCcCCCccccccccccccccccccHhhhhccccCCHHHHHHHHhcccccCCCC
Confidence 357889999999 7999999983 3467899999999999999999999999988899999999999999999888999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhc
Q 033769 88 KMVFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 88 ~m~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
.|||.++++++|+++|++||++|+
T Consensus 117 ~Mp~~gllsdedi~aLiAYL~sLk 140 (140)
T 3m97_X 117 KMAFAGLPKIEDRANLIAYLEGQQ 140 (140)
T ss_dssp SCCCCCCCSHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcC
Confidence 999988989999999999999985
No 7
>1co6_A Protein (cytochrome C2); electron transport(heme protein); HET: HEM; 1.60A {Blastochloris viridis} SCOP: a.3.1.1 PDB: 1cry_A* 1io3_A*
Probab=99.94 E-value=7.7e-27 Score=140.78 Aligned_cols=102 Identities=49% Similarity=0.924 Sum_probs=90.9
Q ss_pred CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033769 10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM 89 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m 89 (112)
+++++|++||.. |+.||++++.+...+||+|.++..+..+..++|.|+..++..++.|+.++|..+|+++....+++.|
T Consensus 1 gd~~~G~~lf~~-C~~CH~~~g~g~~~~gP~L~~~~~r~~~~~~~~~y~~~~~~~~~~~~~~~l~~~i~~~~~~~~g~~M 79 (107)
T 1co6_A 1 QDAASGEQVFKQ-CLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTEEVFREYIRDPKAKIPGTKM 79 (107)
T ss_dssp CCHHHHHHHHHH-HHTTCCCSTTCCCCSSCCCTTCTTCBTTCSTTCCCCHHHHTSCCBCCHHHHHHHHHCHHHHSTTCSC
T ss_pred CCHHHHHHHHHH-hHhhCCCCCCCCCCCCCCcccccCccccccCcccchHHHHhcCceecHHHHHHHHHCccccCCCCCC
Confidence 478899999998 9999999876566789999999988888888999988888889999999999999998777788889
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcC
Q 033769 90 VFPGLKKPQDRADLIAYLKESTA 112 (112)
Q Consensus 90 ~~~~~l~~~ei~~l~ayl~sl~~ 112 (112)
||.++++++||++|++||+++..
T Consensus 80 p~~~l~s~~ei~~l~aYl~sl~~ 102 (107)
T 1co6_A 80 IFAGVKDEQKVSDLIAYIKQFNA 102 (107)
T ss_dssp CCCCCCCHHHHHHHHHHHHTBCT
T ss_pred CCCCCCCHHHHHHHHHHHHHccc
Confidence 98888789999999999999863
No 8
>1cxc_A Cytochrome C2; electron transport (cytochrome); HET: HEM; 1.60A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1cxa_A* 1l9b_C* 1l9j_C* 2cxb_A*
Probab=99.94 E-value=3.5e-27 Score=146.08 Aligned_cols=102 Identities=36% Similarity=0.790 Sum_probs=89.3
Q ss_pred CCCHHHHHHHHHhhCcccccccC-------CCCCCCCCCCCCccCCCCCCCCCC-ccchhc---cccceeeCHHHHHHHH
Q 033769 9 PGNPKAGEKIFKTKCAQCHTVVK-------GAGHKQGPNLNGLFGRQSGTTPGY-SYSAAN---KGMAVIWEEKTLYDYL 77 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~-------~~~~~~gP~l~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~l~~~l 77 (112)
.+++++|+++|+ +|++||++++ ++.+.+||+|.++.+|..+..++| .|+..+ +..++.|+.++|..||
T Consensus 2 ~gd~~~G~~~F~-~C~~CH~v~~~~g~~~~g~~~~vGP~L~gv~~r~~~~~~g~~~ys~~l~~~~~~g~~w~~~~l~~~l 80 (124)
T 1cxc_A 2 EGDPEAGAKAFN-QCQTCHVIVDDSGTTIAGRNAKTGPNLYGVVGRTAGTQADFKGYGEGMKEAGAKGLAWDEEHFVQYV 80 (124)
T ss_dssp CSCHHHHHHHGG-GGGGTCCEECTTSCEEECCSCCSSCCCTTCTTCBTTCCTTCCCCCHHHHHHHHTTCBCCHHHHHHHH
T ss_pred CCCHHHHHHHHH-hhhhhcCCCCccccccccCCCCCCCCCcCccCCcccccccHHHhhHHHHhhhhcCccCCHHHHHHHH
Confidence 478999999995 8999999875 245679999999999998888888 788776 4578999999999999
Q ss_pred hCCCCCCCC--------CCCCCCCCCCHHHHHHHHHHHHhhcC
Q 033769 78 LNPKKYIPG--------TKMVFPGLKKPQDRADLIAYLKESTA 112 (112)
Q Consensus 78 ~~~~~~~~~--------~~m~~~~~l~~~ei~~l~ayl~sl~~ 112 (112)
.+|...+|+ +.|+|. +++++|+++|++||++|+.
T Consensus 81 ~~P~~~~pg~~~d~~a~t~M~~~-l~~~~d~~dliaYL~sl~~ 122 (124)
T 1cxc_A 81 QDPTKFLKEYTGDAKAKGKMTFK-LKKEADAHNIWAYLQQVAV 122 (124)
T ss_dssp HCHHHHHHHHHSCTTCCCSCCCC-CCCHHHHHHHHHHHHHHCC
T ss_pred hChHhhCCCcccCcccCCCCCCc-cCCHHHHHHHHHHHHHcCC
Confidence 999888888 899988 7789999999999999863
No 9
>2bh4_X Cytochrome C-550; C-type cytochrome, heme, electron transfer, axial ligand, pyrrolidone carboxylic acid; HET: HEC; 1.55A {Paracoccus versutus} PDB: 2bh5_X* 2bgv_X* 1cot_A*
Probab=99.93 E-value=4.1e-27 Score=147.52 Aligned_cols=99 Identities=33% Similarity=0.697 Sum_probs=88.8
Q ss_pred CCCHHHHHHHHHhhCcccccccCC------CCCCCCCCCCCccCCCCCCCCCCccchhc-----cccceeeCHHHHHHHH
Q 033769 9 PGNPKAGEKIFKTKCAQCHTVVKG------AGHKQGPNLNGLFGRQSGTTPGYSYSAAN-----KGMAVIWEEKTLYDYL 77 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~~------~~~~~gP~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~l 77 (112)
.+++++|+++|.+ |++||++++. +.+.+||+|.++.+|..+..++|.|+..+ +..++.|+.++|..||
T Consensus 2 ~gd~~~G~~lF~~-C~~CH~v~~~~g~~~~~~~~~GP~L~gv~gr~~~~~~gf~ys~~l~~~~~~~~g~~w~~~~L~~~l 80 (134)
T 2bh4_X 2 EGDAAKGEKEFNK-CKACHMVQAPDGTDIVKGGKTGPNLYGVVGRKIASVEGFKYGDGILEVAEKNPDMVWSEADLIEYV 80 (134)
T ss_dssp CCCHHHHHHHGGG-TTTTCCEECTTSCEEECCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHHHHCTTCBCCHHHHHHHH
T ss_pred CCcHHHHHHHHHH-hHhhcCCcCCCcccccccCCcCCCcccccCccccccccccccHHHhhhhccccCccCCHHHHHHHH
Confidence 5789999999986 9999999865 45789999999999999999999999877 7789999999999999
Q ss_pred hCCCCCCCC--------CCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769 78 LNPKKYIPG--------TKMVFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 78 ~~~~~~~~~--------~~m~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
++|....|+ +.|+|. |+++|+ +||+||++|+
T Consensus 81 ~~P~~~~pg~~~d~~a~t~Mpf~--Ls~~e~-dliaYL~sl~ 119 (134)
T 2bh4_X 81 TDPKPWLVEKTGDSAAKTKKTFK--LGKNQA-DVVAFLAQHS 119 (134)
T ss_dssp HCHHHHHHHHHCCTTCCCSCCCC--CCSCHH-HHHHHHHHTC
T ss_pred hCHHhcCCCcccCccccCCCCCC--CChHHH-HHHHHHHHcC
Confidence 999887787 899987 678888 9999999986
No 10
>1vyd_A Cytochrome C2; electron transport, redox, mutant; HET: HEM; 2.3A {Rhodobacter capsulatus} SCOP: a.3.1.1 PDB: 1c2r_A*
Probab=99.93 E-value=4.8e-27 Score=143.95 Aligned_cols=99 Identities=35% Similarity=0.737 Sum_probs=86.2
Q ss_pred CCHHHHHHHHHhhCcccccccCC------CCCCCCCCCCCccCCCCCCCCCCccchhc---cccceeeCHHHHHHHHhCC
Q 033769 10 GNPKAGEKIFKTKCAQCHTVVKG------AGHKQGPNLNGLFGRQSGTTPGYSYSAAN---KGMAVIWEEKTLYDYLLNP 80 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~------~~~~~gP~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~~ 80 (112)
+++++|+++|. +|++||+++++ +.+.+||+|.++.+|..+..++|.|++.+ ...++.|+.++|..||++|
T Consensus 1 gd~~~G~~~F~-~C~~CH~v~~~~g~~~~~~~~~GP~L~gv~gr~~~~~~gf~ys~~l~~~~~~g~~w~~~~L~~~l~~P 79 (116)
T 1vyd_A 1 GDAAKGEKEFN-KCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEEDIATYVKDP 79 (116)
T ss_dssp CCHHHHHHHGG-GTTTTCCEECTTSCEEECCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHHHTTCBCCHHHHHHHHHCH
T ss_pred CCHHHHHHHHH-cchhhCCCCCCCCccccccCccCcccccccccccccccccccCHHHHhhcccCccCCHHHHHHHHHCH
Confidence 47899999998 89999999854 45678999999999999999999999988 4688999999999999999
Q ss_pred CCCCCC--------CCCCCCCCCCHHHHHHHHHHHHhhcC
Q 033769 81 KKYIPG--------TKMVFPGLKKPQDRADLIAYLKESTA 112 (112)
Q Consensus 81 ~~~~~~--------~~m~~~~~l~~~ei~~l~ayl~sl~~ 112 (112)
....|+ +.|+|. +.++++ +|++||++|++
T Consensus 80 ~~~~pg~~~d~~~~t~Mpf~-l~~~~~--dliaYL~sl~~ 116 (116)
T 1vyd_A 80 GAFLKEKLDDKKAKTEMAFK-LAKGGE--DVAAYLASVVK 116 (116)
T ss_dssp HHHHHHHHTCTTCCCSCCCC-CSSCHH--HHHHHHHHTCC
T ss_pred HHhCCCcccCccccCCCCCC-CCCHHH--HHHHHHHHhcC
Confidence 888888 899986 543444 99999999975
No 11
>3c2c_A Cytochrome C2; electron transport protein (cytochrome); HET: HEM; 1.68A {Rhodospirillum rubrum} SCOP: a.3.1.1 PDB: 2c2c_A*
Probab=99.93 E-value=2e-26 Score=140.00 Aligned_cols=100 Identities=40% Similarity=0.735 Sum_probs=85.7
Q ss_pred CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhc---cccceeeCHHHHHHHHhCCCCCCCC
Q 033769 10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN---KGMAVIWEEKTLYDYLLNPKKYIPG 86 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~ 86 (112)
+++++|++||+ +|+.||++++.+...++|.|.++.+|..+..++|.|+..+ +..++.|+.++|..+|++|....++
T Consensus 2 gd~~~G~~lf~-~Ca~CH~~~g~g~~~~gP~L~gi~~r~~~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~i~~p~~~~~g 80 (112)
T 3c2c_A 2 GDAAAGEKVSK-KCLACHTFDQGGANKVGPNLFGVFENTAAHKDNYAYSESYTEMKAKGLTWTEANLAAYVKNPKAFVLE 80 (112)
T ss_dssp CCHHHHHHHGG-GGTTTCCCSTTCCCSSSCCCTTCTTSBSSCCTTSCCCHHHHHHHHTTCBCCHHHHHHHHHCHHHHHHH
T ss_pred ccHHHHHHHHH-hHHhhCCCCCCCCCCCCCCcccccCCcccccccccccHHHHhccccCcccCHHHHHHHHhChhhhcCC
Confidence 68899999998 9999999987666678999999999998889999888766 4578899999999999988654443
Q ss_pred --------CCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769 87 --------TKMVFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 87 --------~~m~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
+.|||. +++++||++|++||++|+
T Consensus 81 ~~~~~~~~~~Mp~~-l~~~~di~~l~aYl~sl~ 112 (112)
T 3c2c_A 81 KSGDPKAKSKMTFK-LTKDDEIENVIAYLKTLK 112 (112)
T ss_dssp HHCCTTCCCSCCCC-CCCHHHHHHHHHHHTTCC
T ss_pred CcCCccccCCCCCc-CCCHHHHHHHHHHHHHcC
Confidence 678877 777899999999999975
No 12
>155c_A Cytochrome C550; electron transport; HET: HEM; 2.50A {Paracoccus denitrificans} SCOP: a.3.1.1
Probab=99.93 E-value=5.7e-26 Score=142.46 Aligned_cols=99 Identities=33% Similarity=0.694 Sum_probs=87.9
Q ss_pred CCCHHHHHHHHHhhCcccccccCC-----CCCCCCCCCCCccCCCCCCCCCCccchhc-----cccceeeCHHHHHHHHh
Q 033769 9 PGNPKAGEKIFKTKCAQCHTVVKG-----AGHKQGPNLNGLFGRQSGTTPGYSYSAAN-----KGMAVIWEEKTLYDYLL 78 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~~-----~~~~~gP~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~l~ 78 (112)
.+++++|+++|.+ |++||++++. +.+.+||+|.++.+|..+..++|.|++.+ +..++.|+.++|..||+
T Consensus 3 ~gd~~~G~~lF~~-CaaCH~~~~~~g~~~~~~~~GP~L~gv~gr~~~~~~gf~ys~~l~~~~~~~~~~~w~~~~L~~~i~ 81 (135)
T 155c_A 3 EGDAAKGEKEFNK-CKACHMIQAPDGTDIKGGKTGPNLYGVVGRKIASEEGFKYGEGILEVAEKNPDLTWTEANLIEYVT 81 (135)
T ss_dssp CCCSHHHHHHHTT-TTTTEECCCSSSCSSCCCSSEEECSSCTTSCTTCSSSSCCCHHHHHHHHHCSCCCCCSHHHHHHHH
T ss_pred ccCHHHHHHHHHH-HHHhcCCCCCCCccccCCCCCCCcccccCccccccccccchHHHhhhhhccccccCCHHHHHHHHh
Confidence 4788999999986 9999999864 44678999999999999999999999888 78889999999999999
Q ss_pred CCCCCCCC--------CCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769 79 NPKKYIPG--------TKMVFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 79 ~~~~~~~~--------~~m~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
+|....|+ +.|+|. ++++|+ +|++||++|+
T Consensus 82 ~P~~~~pg~~~~~~~~t~Mpf~--L~~~e~-dliAYL~sl~ 119 (135)
T 155c_A 82 DPKPLVKKMTDDKGAKTKMTFK--MGKNQA-DVVAFLAQDD 119 (135)
T ss_dssp SSTTTTTTTSCCSCCCCSCCCC--CCSCHH-HHHHHHHHHS
T ss_pred CHHhhCCCccccccccCCCCCC--CCCHHH-HHHHHHHhcC
Confidence 99999998 899987 556667 9999999986
No 13
>1qn2_A Cytochrome CH; electron transport; HET: HEC; 2.01A {Methylobacterium extorquens} SCOP: a.3.1.1
Probab=99.93 E-value=1e-25 Score=134.29 Aligned_cols=98 Identities=44% Similarity=0.887 Sum_probs=86.0
Q ss_pred CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCC-CCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCC
Q 033769 10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGT-TPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTK 88 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 88 (112)
+++++|++||. +|+.||++++ ..+||+|.++.++..+. .++|.|++.++..++.|+.++|..+|+++....+++.
T Consensus 2 gd~~~G~~l~~-~C~~CH~~~~---~~~gP~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~g~~ 77 (100)
T 1qn2_A 2 GDAAAGEKAFA-PCKACHNFEK---NGVGPTLKGVVGAKAGEGADGYAFSDALKKSGLTWDQADLKQWLADPKKKVPGTK 77 (100)
T ss_dssp CCHHHHHHHTG-GGGGTCCSSS---CSSSCCCTTCTTSBTTTCTTTCCCCHHHHHHCCBCCHHHHHHHHHCHHHHSTTCS
T ss_pred ccHHHHHHHHH-HHHHhcCCCC---CCCCCCcccccCccccccCCCccccHHHHhcCcccCHHHHHHHHhCcccccCCCC
Confidence 68899999996 5999999873 46799999998888776 7888888888888899999999999999887778888
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhc
Q 033769 89 MVFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 89 m~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
|||.++++++||++|++||++|+
T Consensus 78 Mp~~~~~s~~di~~l~aYl~sl~ 100 (100)
T 1qn2_A 78 MVFPGISDPKKVDDIIAYLKTKS 100 (100)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCHHHHHHHHHHHHhcC
Confidence 99888889999999999999974
No 14
>1jdl_A C552, cytochrome C2, ISO-2; alpha helix, electron transport; HET: HEM; 1.70A {Rhodospirillum centenum} SCOP: a.3.1.1
Probab=99.92 E-value=2.1e-25 Score=137.04 Aligned_cols=102 Identities=41% Similarity=0.807 Sum_probs=85.5
Q ss_pred CCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhc---cccceeeCHHHHHHHHhCCCCCCC
Q 033769 9 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN---KGMAVIWEEKTLYDYLLNPKKYIP 85 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~ 85 (112)
.+++++|++|| ++|+.||++++.+...+||+|.++..+..+..++|.|+..+ +..++.|+.++|..+|++|....|
T Consensus 2 ~gd~~~G~~lf-~~C~~CH~~~~~~~~~~gP~L~gi~~r~~~~~~~~~y~~~~~~~~~~g~~~~~~~l~~~i~~p~~~~~ 80 (121)
T 1jdl_A 2 DGDPAKGEAVF-KKCMACHRVGPDAKNLVGPALTGVIDRQAGTAPGFNYSAINHAAGEAGLHWTPENIIAYLPDPNAFLR 80 (121)
T ss_dssp -CCHHHHHHHG-GGTTTTCCCSTTCCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHHHTTCBCCHHHHHHHTTCHHHHHH
T ss_pred CCCHHHHHHHH-hhhhhhCCCCCCCCCCCCCCchhhcCCccccccCccccHHHHhhhhcCCccCHHHHHHHHhCcccccC
Confidence 47899999999 79999999986556778999999999988888888887765 456788999999999998875555
Q ss_pred C--------------CCCCCCCCCCHHHHHHHHHHHHhhcC
Q 033769 86 G--------------TKMVFPGLKKPQDRADLIAYLKESTA 112 (112)
Q Consensus 86 ~--------------~~m~~~~~l~~~ei~~l~ayl~sl~~ 112 (112)
+ +.|||. +++++||++|++||++|+.
T Consensus 81 g~~~~~~~~~~~~~~~~Mp~~-l~~~~ei~~l~aYL~sl~~ 120 (121)
T 1jdl_A 81 KFLADAGHAEQAKGSTKMVFK-LPDEQERKDVVAYLKQFSP 120 (121)
T ss_dssp HHHHHTTCGGGGSSCCSCCCC-CCCHHHHHHHHHHHGGGCC
T ss_pred CcccccchhhcccccccCCcc-CCCHHHHHHHHHHHHHccc
Confidence 4 778877 6555999999999999863
No 15
>1c2n_A Cytochrome C2; electron transport; HET: HEC; NMR {Rhodobacter capsulatus} SCOP: a.3.1.1
Probab=99.92 E-value=1.9e-25 Score=140.33 Aligned_cols=100 Identities=33% Similarity=0.688 Sum_probs=86.6
Q ss_pred CCCHHHHHHHHHhhCcccccccCC------CCCCCCCCCCCccCCCCCCCCCCccchhc---cccceeeCHHHHHHHHhC
Q 033769 9 PGNPKAGEKIFKTKCAQCHTVVKG------AGHKQGPNLNGLFGRQSGTTPGYSYSAAN---KGMAVIWEEKTLYDYLLN 79 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~~------~~~~~gP~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~ 79 (112)
.+++++|+++|. +|++||++++. +...+||+|.++.+|..+..++|.|++.+ +..|+.|++++|..||++
T Consensus 21 a~~~~~G~~lf~-~C~~CH~~~~~~G~~~~~~~~~gP~L~~i~~r~~g~~~~~~ys~~l~~~~~~g~~w~~~~l~~~i~~ 99 (137)
T 1c2n_A 21 AGDAAKGEKEFN-KCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEEDIATYVKD 99 (137)
T ss_dssp -CCHHHHHHHHH-HHTTTCCBCCTTSCCSBCCCCSSCCCTTCTTSCSSCCSSCCCCHHHHHHHHTTCCCCHHHHHHHTTS
T ss_pred ccChHHHHHHHH-hHHhhCCCCCCCccccccccCCCcchhcccccccCCCCcccccHHHHhhhhcCccCCHHHHHHHHhC
Confidence 378999999999 99999999853 24568999999999999999999998876 367899999999999999
Q ss_pred CCCCCCC--------CCCCCCCCCCHHHHHHHHHHHHhhcC
Q 033769 80 PKKYIPG--------TKMVFPGLKKPQDRADLIAYLKESTA 112 (112)
Q Consensus 80 ~~~~~~~--------~~m~~~~~l~~~ei~~l~ayl~sl~~ 112 (112)
|....|+ +.|||. ++++|+ +|++||+++++
T Consensus 100 p~~~~~g~~~~~~~~~~Mp~~--Lsd~e~-~liaYL~sl~~ 137 (137)
T 1c2n_A 100 PGAFLKEKLDDKKAKTGMAFK--LAKGGE-DVAAYLASVVK 137 (137)
T ss_dssp TTHHHHHHHTCSCCCCSCCCC--CSSSHH-HHHHHHHHHCC
T ss_pred HHhhCCCcccccCcCCCCCCC--CCcHHH-HHHHHHHHccC
Confidence 9876666 789975 779999 99999999875
No 16
>1i8o_A Cytochrome C2; electron transport, heme, ammonia, oxidized; HET: HEC; 1.15A {Rhodopseudomonas palustris} SCOP: a.3.1.1 PDB: 1fj0_A* 1hh7_A* 1i8p_A*
Probab=99.90 E-value=3.2e-24 Score=130.84 Aligned_cols=97 Identities=37% Similarity=0.785 Sum_probs=82.3
Q ss_pred CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhc---cccceeeCHHHHHHHHhCCCCCCCC
Q 033769 10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN---KGMAVIWEEKTLYDYLLNPKKYIPG 86 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~ 86 (112)
+++++|++||. .|++||+. +...+||.|.++.++..+..++|.|+..+ +..|+.|+.++|.+||.+|....|+
T Consensus 1 gd~~~G~~lf~-~C~~CH~~---~~~~~GP~l~gi~~r~~~~~~~~~y~~~~~~~~~~g~~w~~~~L~~~l~~p~~~~~g 76 (114)
T 1i8o_A 1 EDAKAGEAVFK-QCMTCHRA---DKNMVGPALAGVVGRKAGTAAGFTYSPLNHNSGEAGLVWTADNIVPYLADPNAFLKK 76 (114)
T ss_dssp CCHHHHHHHHH-HHTTTCCS---SSCSSSCCCTTCTTSBTTCCTTCCCCHHHHHHHHTTCBCCHHHHHHHHHCHHHHHHH
T ss_pred CcHHHHHHHHH-hHHhhCCC---cccCcCcccccccccccccccchhhhHHHhhccccCccccHHHHHHHHHCHHhhCCC
Confidence 47889999996 99999993 34678999999999999988899888766 3678899999999999999776665
Q ss_pred --------------CCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769 87 --------------TKMVFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 87 --------------~~m~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
+.|+|. +.+++||++|++||++|+
T Consensus 77 ~~~d~~~~~~~~~~~~Mp~~-l~~~~d~~~liaYL~sl~ 114 (114)
T 1i8o_A 77 FLTEKGKADQAVGVTKMTFK-LANEQQRKDVVAYLATLK 114 (114)
T ss_dssp HHHHTTCGGGCCSCCSSCCC-CCCHHHHHHHHHHHHTTC
T ss_pred CcccccccccccccCcCCCC-CCCHHHHHHHHHHHHhcC
Confidence 889977 554599999999999985
No 17
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Probab=99.82 E-value=4.5e-20 Score=109.06 Aligned_cols=92 Identities=22% Similarity=0.435 Sum_probs=70.5
Q ss_pred CCCHHHHHHHHHhh-CcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCC-
Q 033769 9 PGNPKAGEKIFKTK-CAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPG- 86 (112)
Q Consensus 9 ~~~~~~G~~lf~~~-C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~- 86 (112)
.+++++|++||..+ |+.||+.++ .+.++|.|.++.++...... ..+..|+.++|..+|+++....+.
T Consensus 3 ~~~~~~G~~l~~~~~C~~CHg~~g--~~~~gp~l~~~~~~~~~~~~---------~~~~~~~~~~l~~~i~~~~~~~~~g 71 (99)
T 1w2l_A 3 MPLAELGARLYREKACFSCHSIDG--SRLVGPSFKGLYGSTRTFED---------GTTAVADENYLRESILQPGAKVVQG 71 (99)
T ss_dssp CCHHHHHHHHHHHTSGGGTCCSSS--CCSSSCCSTTCTTCEEEBTT---------SCEEECCHHHHHHHHHSTTSSCBTT
T ss_pred cccHHHHHHHHhhCChhhcCCCCC--CCCCCCCcccccccccccCC---------CCcccCCHHHHHHHHHccCcccccc
Confidence 46789999999998 999999875 34578999887655422111 134568899999999999865432
Q ss_pred --CCCC-CCCCCCHHHHHHHHHHHHhhc
Q 033769 87 --TKMV-FPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 87 --~~m~-~~~~l~~~ei~~l~ayl~sl~ 111 (112)
+.|| |...++++||++|++||++|+
T Consensus 72 ~~~~Mp~~~~~ls~~ei~~l~~yl~sl~ 99 (99)
T 1w2l_A 72 YPNVMPASYASLSEREVAALIEFIKQQQ 99 (99)
T ss_dssp SCSCCCGGGGGCCHHHHHHHHHHHHTCC
T ss_pred ccccCccccccCCHHHHHHHHHHHHHcC
Confidence 3564 777789999999999999985
No 18
>2c1d_B SOXX; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus pantotrophus}
Probab=99.79 E-value=2e-19 Score=112.51 Aligned_cols=86 Identities=30% Similarity=0.517 Sum_probs=66.2
Q ss_pred CCCCCHHHHHHHHH----hhCcccccccCCC----CCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHh
Q 033769 7 APPGNPKAGEKIFK----TKCAQCHTVVKGA----GHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLL 78 (112)
Q Consensus 7 ~~~~~~~~G~~lf~----~~C~~CH~~~~~~----~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 78 (112)
...+++.+|++||. .+|+.||+.++.+ ++.++|+|.++..+ |+.++|..+|.
T Consensus 21 ~~~~~~~~G~~lf~~~~~~~C~~CH~~~g~g~~~~~g~~gP~L~~~~~~--------------------~~~~~l~~~i~ 80 (137)
T 2c1d_B 21 GAPGNPEEGVRIMTTNALGNCVACHQIGALPDVEFPGTIAPPLDGAGDR--------------------WTEAQLRGIVA 80 (137)
T ss_dssp SSCCCHHHHHHHHTCTTTTCGGGTBCCTTCTTCCSCCCSBCCSTTHHHH--------------------SCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhcccccChhhhcCCCCCCCccccccCCCCHhHhhhc--------------------cCHHHHHHHHc
Confidence 44678999999998 7899999997643 23567888865432 36789999999
Q ss_pred CCCCCCCCCCCC-CC----------------------CCCCHHHHHHHHHHHHhhcC
Q 033769 79 NPKKYIPGTKMV-FP----------------------GLKKPQDRADLIAYLKESTA 112 (112)
Q Consensus 79 ~~~~~~~~~~m~-~~----------------------~~l~~~ei~~l~ayl~sl~~ 112 (112)
+|....++..|+ |. ..+|++||++|++||++|++
T Consensus 81 ~p~~~~~~~~Mp~~~~~~~~~~~g~~~~~~~~Mp~~~~~Ls~~ei~~l~aYl~sl~~ 137 (137)
T 2c1d_B 81 NAKMTFEGTFMPAFYKVDGFVRPGDGFSGKAGAEPLAPILNAQQIEDVVAFLVTLKE 137 (137)
T ss_dssp HGGGTSTTCSSCCSSCCSCCSSBBSTTSSSBCCSSCCCSSCHHHHHHHHHHHHTCCC
T ss_pred CccccCCCcccCccccccccccccccccccccChhhhcCCCHHHHHHHHHHHHHccC
Confidence 887655655564 43 26889999999999999874
No 19
>1h32_B Cytochrome C, SOXX; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.1 PDB: 1h31_B* 1h33_B* 2oz1_B*
Probab=99.78 E-value=3.1e-19 Score=111.68 Aligned_cols=86 Identities=31% Similarity=0.594 Sum_probs=65.0
Q ss_pred CCCCCHHHHHHHHHh----hCcccccccCCC----CCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHh
Q 033769 7 APPGNPKAGEKIFKT----KCAQCHTVVKGA----GHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLL 78 (112)
Q Consensus 7 ~~~~~~~~G~~lf~~----~C~~CH~~~~~~----~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 78 (112)
...+++.+|++||.+ +|+.||+.++.+ +..++|+|.++..+ |+.++|..+|.
T Consensus 22 ~~~~~~~~G~~lf~~~~~~~C~~CH~~~g~~~~~~~~~~gP~L~~~~~~--------------------~~~~~l~~~i~ 81 (138)
T 1h32_B 22 DAPGDPVEGRRLMTDRSVGNCIACHEVTEMADAQFPGTVGPSLDGVAAR--------------------YPEAMIRGILV 81 (138)
T ss_dssp SSCCCHHHHHHHHHCTTTTCGGGTCCCTTC---CCCCSSSCCCTTHHHH--------------------SCHHHHHHHHH
T ss_pred hcCCCHHHHHHHHhhccCCChhhccCCCCcCccccCCcCCCChhHhccc--------------------CCHHHHHHHHh
Confidence 345899999999997 799999997531 34678999876432 46889999999
Q ss_pred CCCCCCCCCCCC-C----------------------CCCCCHHHHHHHHHHHHhhcC
Q 033769 79 NPKKYIPGTKMV-F----------------------PGLKKPQDRADLIAYLKESTA 112 (112)
Q Consensus 79 ~~~~~~~~~~m~-~----------------------~~~l~~~ei~~l~ayl~sl~~ 112 (112)
+++...+++.|| | ...||++||++|++||++|++
T Consensus 82 ~~~~~~~~~~Mp~~~~~~~~~~~~~~~~g~~~M~~~~~~Ls~~ei~~l~aYl~sl~~ 138 (138)
T 1h32_B 82 NSKNVFPETVMPAYYRVEGFNRPGIAFTSKPIEGEIRPLMTAGQIEDVVAYLMTLTQ 138 (138)
T ss_dssp CHHHHSTTCSSCCTTCCSCCSSBBSTTSCCBCCSCCCCSSCHHHHHHHHHHHTTCC-
T ss_pred CcccCCCCCccCccccccccccccccccCcccCcccccCCCHHHHHHHHHHHHhcCC
Confidence 887544554453 3 236789999999999999864
No 20
>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron transport; HET: HEC; NMR {Pseudomonas putida}
Probab=99.77 E-value=1.5e-19 Score=108.60 Aligned_cols=80 Identities=31% Similarity=0.560 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHhhCcccccccCC--CCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCC--
Q 033769 10 GNPKAGEKIFKTKCAQCHTVVKG--AGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIP-- 85 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~--~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-- 85 (112)
+++++|++||..+|+.||+.++. +....+|+|.++..+. +.++|..+|.++....+
T Consensus 1 gd~~~G~~lf~~~C~~CH~~~g~~~g~~~~gP~L~~~~~~~--------------------~~~~l~~~i~~p~~~~~g~ 60 (110)
T 2l4d_A 1 GSFTSGEQIFRTRCSSCHTVGNTEPGQPGIGPDLLGVTRQR--------------------DANWLVRWLKVPDQMLAEK 60 (110)
T ss_dssp ----CHHHHHHHHTTTTCCSSCSBTTBCTTSCCCTTGGGTS--------------------CTTHHHHHTTSHHHHHHTT
T ss_pred CCHHHHHHHHHHhhHHhcCCCCCCCCCCCCCCChhhhhccc--------------------CHHHHHHHHhChhhhccCc
Confidence 46789999999999999999875 4467899999876543 23456666665433211
Q ss_pred ------------CCCCC-CCCCCCHHHHHHHHHHHHhhc
Q 033769 86 ------------GTKMV-FPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 86 ------------~~~m~-~~~~l~~~ei~~l~ayl~sl~ 111 (112)
.+.|| | . ||++|+++|++||+++.
T Consensus 61 ~~~~~~~~~g~~~~~Mp~~-~-Ls~~ei~~l~~yl~~~~ 97 (110)
T 2l4d_A 61 DPLAMLLFEQYNRLAMPNM-R-LGDAEVSALISYLEEET 97 (110)
T ss_dssp CHHHHHHHHHHTSCCCCCC-C-CCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHhccCcCcCCCC-C-CCHHHHHHHHHHHHHcc
Confidence 24564 5 4 68999999999999874
No 21
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=99.75 E-value=2.6e-19 Score=103.82 Aligned_cols=82 Identities=24% Similarity=0.237 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033769 10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM 89 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m 89 (112)
+++.+|++||. +|+.||+.++.+....+|.|.+.... +..+.|..++...+...+...|
T Consensus 2 ~~~~~G~~ly~-~C~~CHg~~g~g~~~~~P~L~~~~~~--------------------~~~~~l~~~~~g~~~~~~~~~M 60 (87)
T 1cno_A 2 GDIEAGKAKAA-VCAACHGQNGISQVPIYPNLAGQKEQ--------------------YLVAALKAYKAGQRQGGQAPVM 60 (87)
T ss_dssp CCHHHHHHHGG-GTHHHHCTTSCCSSTTSCCCTTCCHH--------------------HHHHHHHHHHTTCBCSTTHHHH
T ss_pred ccHHHHHHHHH-HHHhhcCCCCCCCCCCCCCCCCCCHH--------------------HHHHHHHHHHcCCcCCCccccc
Confidence 68899999999 99999999876555568888753110 1233444444333322222256
Q ss_pred -CCCCCCCHHHHHHHHHHHHhhcC
Q 033769 90 -VFPGLKKPQDRADLIAYLKESTA 112 (112)
Q Consensus 90 -~~~~~l~~~ei~~l~ayl~sl~~ 112 (112)
+|...||++||++|++||+++++
T Consensus 61 p~~~~~ls~~ei~~l~~yl~~l~~ 84 (87)
T 1cno_A 61 QGQATALSDADIANLAAYYASNPA 84 (87)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHSCT
T ss_pred HHHHhhCCHHHHHHHHHHHHhCCc
Confidence 57677899999999999999863
No 22
>3o0r_C Nitric oxide reductase subunit C; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa}
Probab=99.73 E-value=4.9e-18 Score=107.02 Aligned_cols=88 Identities=22% Similarity=0.318 Sum_probs=66.1
Q ss_pred CCCCHHHHHHHHH-hhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCC
Q 033769 8 PPGNPKAGEKIFK-TKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPG 86 (112)
Q Consensus 8 ~~~~~~~G~~lf~-~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 86 (112)
..+++++|+++|. .+|+.||+.++.+ ...+|+|.++..+... ...+.++|..+++++....++
T Consensus 45 ~~~~~~~G~~l~~~~~C~~CH~~~g~g-~~~gP~L~~~~~~~~~---------------~~~~~~~l~~~i~~~~~~~~g 108 (146)
T 3o0r_C 45 MSAAVVRGKLVWEQNNCVGCHTLLGEG-AYFAPELGNVVGRRGG---------------EEGFNTFLQAWMKIQPLNVPG 108 (146)
T ss_dssp CCHHHHHHHHHHHHHTGGGTSEETTEE-CSSSCBCSSGGGGTTH---------------HHHHHHHHHHHHHHCCCCCTT
T ss_pred CchHHHHHHHHHHhCCCcccCCCcCCC-CCCCCCchhhhhhccc---------------ccchHHHHHHHHhCcccCCCC
Confidence 4567889999999 4699999997543 4689999987655421 001347899999998877776
Q ss_pred C-CCCCCCCCCHHHHHHHHHHHHhhcC
Q 033769 87 T-KMVFPGLKKPQDRADLIAYLKESTA 112 (112)
Q Consensus 87 ~-~m~~~~~l~~~ei~~l~ayl~sl~~ 112 (112)
. .||... +|++|+++|++||+++++
T Consensus 109 ~~~Mp~~~-Ls~~ei~~l~ayl~~l~~ 134 (146)
T 3o0r_C 109 RRAMPQFH-LSEGQVDDLAEFLKWSSK 134 (146)
T ss_dssp SCCCCCCC-CCHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCC-cCHHHHHHHHHHHHHhcc
Confidence 4 575334 689999999999998763
No 23
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=99.72 E-value=1e-17 Score=93.62 Aligned_cols=70 Identities=23% Similarity=0.402 Sum_probs=54.3
Q ss_pred HHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCCCCCC
Q 033769 14 AGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPG 93 (112)
Q Consensus 14 ~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m~~~~ 93 (112)
+|+++|..+|+.||+.++.+ ..+|+|.++..+ ++.++|..+++++.. .||. .
T Consensus 2 ~G~~l~~~~C~~CHg~~g~g--~~gP~L~~~~~~--------------------~~~~~l~~~i~~g~~-----~Mp~-~ 53 (71)
T 1c75_A 2 DAEAVVQQKCISCHGGDLTG--ASAPAIDKAGAN--------------------YSEEEILDIILNGQG-----GMPG-G 53 (71)
T ss_dssp CHHHHHHHHTHHHHCTTSSC--SSSCCCTTGGGT--------------------SCHHHHHHHHHHCBT-----TBCS-C
T ss_pred cHHHHHHHHHHHHcCCCCCC--CCCCCCcccccc--------------------CCHHHHHHHHHhCCC-----CCCC-C
Confidence 69999998999999987643 357988865322 267889999988763 3443 5
Q ss_pred CCCHHHHHHHHHHHHhhc
Q 033769 94 LKKPQDRADLIAYLKEST 111 (112)
Q Consensus 94 ~l~~~ei~~l~ayl~sl~ 111 (112)
.+|++|+++|++||++++
T Consensus 54 ~ls~~ei~~l~~yl~~~~ 71 (71)
T 1c75_A 54 IAKGAEAEAVAAWLAEKK 71 (71)
T ss_dssp SSCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 678999999999999874
No 24
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=99.71 E-value=8.8e-18 Score=95.75 Aligned_cols=72 Identities=15% Similarity=0.273 Sum_probs=50.0
Q ss_pred HHHHHHHhhCcccccccCCCCC-CCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHh---CC-CCCCCCCC
Q 033769 14 AGEKIFKTKCAQCHTVVKGAGH-KQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLL---NP-KKYIPGTK 88 (112)
Q Consensus 14 ~G~~lf~~~C~~CH~~~~~~~~-~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---~~-~~~~~~~~ 88 (112)
+|+++|.. |+.||+.++.+.. ..+|.|.+. +.+++...|+ ++ +...++..
T Consensus 2 ~G~~ly~~-Ca~CHg~~g~g~~~~~~P~L~g~------------------------~~~~~~~~l~~~~~g~~~~~~~~~ 56 (79)
T 1c53_A 2 DGAALYKS-CVGCHGADGSKQAMGVGHAVKGQ------------------------KADELFKKLKGYADGSYGGEKKAV 56 (79)
T ss_pred cHHHHHHH-HHhccCCCCCCCCCCCCCcCCCC------------------------CHHHHHHHHHHHHcCCCCCCcccc
Confidence 69999997 9999999875543 567887753 2334444443 33 22222345
Q ss_pred C-CCCCCCCHHHHHHHHHHHHhh
Q 033769 89 M-VFPGLKKPQDRADLIAYLKES 110 (112)
Q Consensus 89 m-~~~~~l~~~ei~~l~ayl~sl 110 (112)
| +|...||++||++|++||++|
T Consensus 57 Mp~~~~~Ls~~ei~~l~~Yl~sl 79 (79)
T 1c53_A 57 MTNLVKRYSDEEMKAMADYMSKL 79 (79)
T ss_pred hHHHHhhCCHHHHHHHHHHHHhC
Confidence 6 576778999999999999986
No 25
>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}
Probab=99.71 E-value=2.7e-18 Score=102.25 Aligned_cols=78 Identities=26% Similarity=0.315 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHH----hCCCCCC
Q 033769 9 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYL----LNPKKYI 84 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l----~~~~~~~ 84 (112)
.+++.+|+++|+ +|+.||+.++.+....+|+|.+. +.+++...| .......
T Consensus 21 ~~~~~~G~~l~~-~C~~CHg~~g~g~~~~~p~L~g~------------------------~~~~~~~~l~~~~~g~~~~~ 75 (103)
T 2zzs_A 21 AGDAAAGQAKAA-VCAACHGADGNATIPGYPNLKGQ------------------------NEQYIVSSIKAYKNKERSGG 75 (103)
T ss_dssp -CCHHHHHHHTT-TTHHHHCTTSCCCSTTCCCCTTC------------------------CHHHHHHHHHHHHTTCBCST
T ss_pred cCCHHHHHHHHH-HHHhhcCCCCCCCCCCCCCCCCC------------------------CHHHHHHHHHHHHcCCCCCC
Confidence 688999999999 99999999876655678888753 233344444 3222111
Q ss_pred CCCCC-CCCCCCCHHHHHHHHHHHHhhc
Q 033769 85 PGTKM-VFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 85 ~~~~m-~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
+...| +|...+|++|+++|++||++++
T Consensus 76 ~~~~Mp~~~~~ls~~ei~~l~~yl~~l~ 103 (103)
T 2zzs_A 76 LAAVMQAQASLLSDDDIANLAAYYSSLK 103 (103)
T ss_dssp THHHHHHHHTTCCHHHHHHHHHHHHHC-
T ss_pred cccchHHHHhhCCHHHHHHHHHHHHhCC
Confidence 11256 4767789999999999999874
No 26
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=99.70 E-value=5.8e-18 Score=96.85 Aligned_cols=78 Identities=17% Similarity=0.227 Sum_probs=56.6
Q ss_pred HHHHHHH-hhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCC-CCCCC-
Q 033769 14 AGEKIFK-TKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIP-GTKMV- 90 (112)
Q Consensus 14 ~G~~lf~-~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~m~- 90 (112)
+|++||. .+|+.||+.++.+ .+|.|.++..+..+. .++.++|..+|+++..... ...||
T Consensus 2 ~G~~l~~~~~C~~CHg~~g~g---~gp~l~~~~~~~~~~---------------~~~~~~l~~~i~~g~~~~~~~~~Mp~ 63 (82)
T 2exv_A 2 DPEVLAKNKGCVACHAIDTKM---VGPAYKDVAAKFAGQ---------------AGAEAELAQRIKNGSQGVWGPIPMPP 63 (82)
T ss_dssp CHHHHHHHTTGGGTCCSSSCC---SSCCHHHHHHHHTTC---------------TTHHHHHHHHHHHCBSSSSSSSCBCC
T ss_pred cHHHHHHhCCchhhcCCCCCC---CCcCHHHHHHHhcCC---------------cchHHHHHHHHHcCCCCCCCCCCCCC
Confidence 6999998 5799999987533 678887665433211 1247889999988865332 24564
Q ss_pred CCCCCCHHHHHHHHHHHHhhc
Q 033769 91 FPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 91 ~~~~l~~~ei~~l~ayl~sl~ 111 (112)
| .+|++||++|++||++|+
T Consensus 64 ~--~ls~~ei~~l~~yl~~lk 82 (82)
T 2exv_A 64 N--AVSDDEAQTLAKWVLSQK 82 (82)
T ss_dssp C--CCCHHHHHHHHHHHHTCC
T ss_pred C--CCCHHHHHHHHHHHHhCC
Confidence 6 678999999999999874
No 27
>2gc4_D Cytochrome C-L; electron transfer, methylamine dehydrogenase, blue copper protein, oxidoreductase, electron transport; HET: TRQ HEM; 1.90A {Paracoccus denitrificans} SCOP: a.3.1.1 PDB: 2gc7_D* 2mta_C* 1mg2_D* 1mg3_D*
Probab=99.70 E-value=1.1e-16 Score=101.17 Aligned_cols=83 Identities=19% Similarity=0.297 Sum_probs=61.4
Q ss_pred CCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCC
Q 033769 8 PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGT 87 (112)
Q Consensus 8 ~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 87 (112)
..+++.+|++||..+|+.||+.++.+ ..+|.|.+... .+. ..++.+.|..+|.++. ++.
T Consensus 42 ~~~~~~~G~~l~~~~Ca~CHg~~g~g--~~gP~L~~~~~---------~~~-------~~~~~~~l~~~i~~G~---~~~ 100 (147)
T 2gc4_D 42 DPEILPEAEELYAGMCSGCHGHYAEG--KIGPGLNDAYW---------TYP-------GNETDVGLFSTLYGGA---TGQ 100 (147)
T ss_dssp CTTTHHHHHHHHHHHTHHHHCTTSSC--SSSCCCSSSCC---------SSG-------GGGSHHHHHHHHHHCC---STT
T ss_pred CHHHHHHHHHHHHhhcHHhCCCCCCC--CCCCCCCcccc---------ccc-------CcCCHHHHHHHHHcCC---CCC
Confidence 45678999999999999999987643 34788875311 110 0136788999998875 234
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhc
Q 033769 88 KMVFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 88 ~m~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
|++|.+.+|++||++|++||+++.
T Consensus 101 Mp~~~~~ls~~ei~~l~~Yl~~l~ 124 (147)
T 2gc4_D 101 MGPMWGSLTLDEMLRTMAWVRHLY 124 (147)
T ss_dssp CCCCTTTSCHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhc
Confidence 446877789999999999999985
No 28
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=99.70 E-value=1.1e-17 Score=95.68 Aligned_cols=78 Identities=24% Similarity=0.343 Sum_probs=57.8
Q ss_pred HHHHHHHh-hCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCC-CCCC-
Q 033769 14 AGEKIFKT-KCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPG-TKMV- 90 (112)
Q Consensus 14 ~G~~lf~~-~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~m~- 90 (112)
+|++||.+ +|+.||+.++. .++|.|.++..+..+.. .+.++|..+|+++.....+ ..||
T Consensus 2 ~G~~l~~~~~C~~CHg~~g~---g~gP~l~~~~~~~~~~~---------------~~~~~l~~~i~~g~~~~~~~~~Mp~ 63 (82)
T 1cch_A 2 DGEALFKSKPCAACHSVDTK---MVGPALKEVAAKNAGVE---------------GAADTLALHIKNGSQGVWGPIPMPP 63 (82)
T ss_dssp CSHHHHHHSTHHHHSCSSSC---SSSCCHHHHHHHSSSCG---------------GGHHHHHHHHHTCCCSSSSSCCCCC
T ss_pred cHHHHHHhCCChhhcCCCCC---CCCcChHHHHHHcCCCc---------------hHHHHHHHHhhcCCCCCCCCCCCCC
Confidence 68999996 79999998753 36899987655443210 1367899999988654432 3464
Q ss_pred CCCCCCHHHHHHHHHHHHhhc
Q 033769 91 FPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 91 ~~~~l~~~ei~~l~ayl~sl~ 111 (112)
| .+|++|+++|++||++|+
T Consensus 64 ~--~ls~~ei~~l~~yl~~l~ 82 (82)
T 1cch_A 64 N--PVTEEEAKILAEWVLSLK 82 (82)
T ss_dssp C--SCCHHHHHHHHHHHHHCC
T ss_pred C--CCCHHHHHHHHHHHHhcC
Confidence 5 678999999999999974
No 29
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=99.70 E-value=1.7e-17 Score=95.41 Aligned_cols=81 Identities=19% Similarity=0.233 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033769 10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM 89 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m 89 (112)
+++++|++||..+|+.||+.++.+ ...+|.|....-.. . ...+.+.+..+++++.. .|+
T Consensus 2 ~~~~~G~~l~~~~C~~CHg~~~~~-~~~~p~l~~~~~~~---------------~-~~~~~~~~~~~i~~g~~----~Mp 60 (86)
T 3ph2_B 2 ADLATGAKVFSANCAACHAGGINL-VNAEKTLKKEALEK---------------F-GMNSIVAITTVVTNGKA----GMP 60 (86)
T ss_dssp CCHHHHHHHHHHHTHHHHCSSSCT-TCSSSSCCHHHHHH---------------T-TCCSHHHHHHHHHHCBT----TBC
T ss_pred ccHHHHHHHHHHHhHHhCCCCCCC-CCCCCccChhhHHh---------------c-cCCCHHHHHHHHHhCCC----CCC
Confidence 678999999999999999976432 34456665311000 0 01267788888887752 344
Q ss_pred CCCCCCCHHHHHHHHHHHHhhc
Q 033769 90 VFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 90 ~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
+|...+|++||++|++||++++
T Consensus 61 ~~~~~ls~~ei~~l~~yl~~~~ 82 (86)
T 3ph2_B 61 AFKGRLTDDQIAAVAAYVLDQA 82 (86)
T ss_dssp CCTTTSCHHHHHHHHHHHHHHH
T ss_pred CcccCCCHHHHHHHHHHHHHhh
Confidence 6777789999999999999875
No 30
>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron, thylakoid, photosynthesis, metal-binding, electron transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB: 2ce1_A* 2dge_A* 2v07_A*
Probab=99.70 E-value=6.1e-17 Score=96.45 Aligned_cols=86 Identities=20% Similarity=0.274 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCC-
Q 033769 9 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGT- 87 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~- 87 (112)
++++.+|++||..+|+.||+.++.+. ..+|.+. .+.+...+. ++.+.|..+|+++...+|..
T Consensus 2 a~~~~~G~~l~~~~Ca~CHg~~g~g~-~~g~~~~---------------~p~l~~~~~-~~~~~l~~~i~~g~~~Mp~~~ 64 (105)
T 2ce0_A 2 TLDIQRGATLFNRACAACHDTGGNII-QPGATLF---------------TKDLERNGV-DTEEEIYRVTYFGKGRMPGFG 64 (105)
T ss_dssp -CCHHHHHHHHHHHTTTTSGGGCCSS-STTCCSS---------------HHHHHHTTC-CSHHHHHHHHHHCBTTBCBCB
T ss_pred chhHHHHHHHHHHHHHHhCCCCCCcC-CCCcccC---------------CcchhhcCC-CCHHHHHHHHHhCcCCCCccc
Confidence 46889999999999999999986432 2233321 111111111 36788999998876544422
Q ss_pred -------CCCCCCCCCHHHHHHHHHHHHhhc
Q 033769 88 -------KMVFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 88 -------~m~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
|++|...||++||++|++||+++.
T Consensus 65 ~~~~~~~M~~~~~~ls~~ei~~l~~yl~~~~ 95 (105)
T 2ce0_A 65 EKCTPRGQCTFGPRLQDEEIKLLAEFVKFQA 95 (105)
T ss_dssp TTCCSGGGBCSSCCBCHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCHHHHHHHHHHHHHhh
Confidence 334666789999999999999874
No 31
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Probab=99.70 E-value=3.3e-17 Score=93.72 Aligned_cols=73 Identities=22% Similarity=0.376 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033769 10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM 89 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m 89 (112)
+++.+|++||..+|+.||+.++ ..+|.|.+. .++.++|..+|+++.. .|+
T Consensus 2 ~~~~~G~~l~~~~C~~CHg~~g----g~~P~L~~~----------------------~~~~~~l~~~i~~g~~----~Mp 51 (80)
T 1wve_C 2 SQWGSGKNLYDKVCGHCHKPEV----GVGPVLEGR----------------------GLPEAYIKDIVRNGFR----AMP 51 (80)
T ss_dssp CCSSSHHHHHHHTTHHHHSTTT----CSSCCCTTS----------------------CCCHHHHHHHHHHCBT----TBC
T ss_pred ccHHHHHHHHHHHHHHhCCCCC----CCCCCCCCC----------------------CCCHHHHHHHHHhCcC----CCC
Confidence 4667899999999999999762 268888641 1267889999988753 344
Q ss_pred CCC-CCCCHHHHHHHHHHHHhhcC
Q 033769 90 VFP-GLKKPQDRADLIAYLKESTA 112 (112)
Q Consensus 90 ~~~-~~l~~~ei~~l~ayl~sl~~ 112 (112)
+|. ..+|++|+++|++||+++++
T Consensus 52 ~~~~~~ls~~ei~~l~~yl~~~~~ 75 (80)
T 1wve_C 52 AFPASYVDDESLTQVAEYLSSLPA 75 (80)
T ss_dssp CCCTTTSCHHHHHHHHHHHHHSCC
T ss_pred CCcccCCCHHHHHHHHHHHHHCcC
Confidence 674 56889999999999999863
No 32
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Probab=99.70 E-value=1.8e-17 Score=95.49 Aligned_cols=82 Identities=24% Similarity=0.384 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCC
Q 033769 9 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTK 88 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 88 (112)
.+++.+|++||..+|+.||+.++.+.. .+|.|. .+.+.... .++.+.|..+++++.. .|
T Consensus 2 ~g~~~~G~~ly~~~Ca~CHg~~g~g~~-~~~~l~---------------~p~l~~~~-~~~~~~l~~~i~~g~~----~M 60 (85)
T 3cu4_A 2 GGSGAGGGELFATHCAGCHPQGGNTVH-PEKTLA---------------RARREANG-IRTVRDVAAYIRNPGP----GM 60 (85)
T ss_dssp -----CHHHHHHHHTTTTSGGGCCSSS-TTCCCC---------------HHHHHHTT-CCSHHHHHHHTTSCCT----TS
T ss_pred CccHHHHHHHHHHHhHHhCCCCCCCCC-CCCCCC---------------chhhhhcC-CCCHHHHHHHHHcCCC----CC
Confidence 367889999999999999998753321 112221 11111111 2468889999988752 34
Q ss_pred CCCCC-CCCHHHHHHHHHHHHhhc
Q 033769 89 MVFPG-LKKPQDRADLIAYLKEST 111 (112)
Q Consensus 89 m~~~~-~l~~~ei~~l~ayl~sl~ 111 (112)
++|.. .||++||++|++||+++.
T Consensus 61 p~~~~~~ls~~ei~~l~~yi~~~~ 84 (85)
T 3cu4_A 61 PAFGEAMIPPADALKIGEYVVASF 84 (85)
T ss_dssp CCCCTTTSCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhC
Confidence 46876 789999999999999874
No 33
>1e29_A Cytochrome C549; electron transport, PSII associated cytochrome, low potential, BIS_histidinyl, PSII modulator; HET: HEC; 1.21A {Synechocystis SP} SCOP: a.3.1.1
Probab=99.70 E-value=4.1e-18 Score=106.55 Aligned_cols=88 Identities=24% Similarity=0.277 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCC--
Q 033769 9 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPG-- 86 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-- 86 (112)
.+++++|++||.++|+.||+ . +.+.+||.|. + + .+.|.++. ...|+.+.|..||++|....+.
T Consensus 23 ~~d~~~G~~lf~~~Ca~CH~-~--g~~~~gP~L~-l-g-----~~~~~~s~-----~~~~~~~~L~~~l~~p~~~~~~~~ 87 (135)
T 1e29_A 23 ARQFTNGQKIFVDTCTQCHL-Q--GKTKTNNNVS-L-G-----LADLAGAE-----PRRDNVLALVEFLKNPKSYDGEDD 87 (135)
T ss_dssp HHHHHHHHHHHHHHTHHHHG-G--GCBSSSSSCS-S-S-----HHHHHTSS-----SCCSSHHHHHHHHHSCBCTTSCSB
T ss_pred cccHHHHHHHHHhHHHHhcC-C--CCCCCCCCce-e-c-----cccccccc-----cccCCHHHHHHHHhChhhccCccc
Confidence 45678999999989999999 3 3456899987 3 2 12222221 1238999999999988654321
Q ss_pred -----------CCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769 87 -----------TKMVFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 87 -----------~~m~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
.+||....||++||++|++||.++.
T Consensus 88 ~~~~~p~~~~~~~mp~~~~Lsd~ei~~laaYl~~~~ 123 (135)
T 1e29_A 88 YSELHPNISRPDIYPEMRNYTEDDIFDVAGYTLIAP 123 (135)
T ss_dssp CTTTSCCTTCTTTCGGGTTCCHHHHHHHHHHHHHHH
T ss_pred cccccccccchhcccccccCCHHHHHHHHHHHHhcc
Confidence 2344224578999999999998864
No 34
>3cp5_A Cytochrome C; electron transfer protein, electron transport; HET: HEC; 1.24A {Rhodothermus marinus}
Probab=99.70 E-value=6.5e-18 Score=103.60 Aligned_cols=80 Identities=25% Similarity=0.473 Sum_probs=60.2
Q ss_pred CCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCC--
Q 033769 8 PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIP-- 85 (112)
Q Consensus 8 ~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-- 85 (112)
..+++.+|++||..+|+.||+.++ ...||+|.++..+. +.++|..+|.++....+
T Consensus 30 ~~~~~~~G~~l~~~~C~~CH~~~g---~~~gP~l~~~~~~~--------------------~~~~l~~~i~~~~~~~~~~ 86 (124)
T 3cp5_A 30 DAALAQQGEQLFNTYCTACHRLDE---RFIGPALRDVTKRR--------------------GPVYIMNVMLNPNGMIQRH 86 (124)
T ss_dssp CHHHHHHHHHHHHHHTTTTCCSSS---CSSSCCCTTHHHHS--------------------CHHHHHHHHHCHHHHHHHC
T ss_pred ChHHHHHHHHHHHHhhHHhCCCCC---CCCCCCcccccccc--------------------CHHHHHHHHhChHhhcccc
Confidence 345678999999999999999864 45689998764432 46788888888764211
Q ss_pred ----------CCCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769 86 ----------GTKMVFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 86 ----------~~~m~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
++.||.. .+|++|+++|++||++++
T Consensus 87 ~~~~~~~~~~~~~Mp~~-~Ls~~ei~~l~~Yl~~l~ 121 (124)
T 3cp5_A 87 PVMKQLVQEYGTMMTDM-ALSEEQARAILEYLRQVA 121 (124)
T ss_dssp HHHHHHHHHHCSCCCCC-CCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhcCCCCCCCC-CCCHHHHHHHHHHHHHhC
Confidence 2467643 568999999999999875
No 35
>1f1c_A Cytochrome C549; dimeric cytochrome, electron transport; HET: HEM; 2.30A {Arthrospira maxima} SCOP: a.3.1.1
Probab=99.69 E-value=2.2e-17 Score=101.80 Aligned_cols=87 Identities=21% Similarity=0.290 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCC------
Q 033769 9 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKK------ 82 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------ 82 (112)
.+++++|++||..+|+.||+.++ ..++|.|..... ......+..|+.++|..+|+++..
T Consensus 21 ~~~~~~G~~lf~~~Ca~CHg~~g---~~~gP~l~~~~~------------~l~~~~~~~~~~~~l~~~i~~~~~~~~~~~ 85 (129)
T 1f1c_A 21 LKEIKKGQQVFNAACAQCHALGV---TRTNPDVNLSPE------------ALALATPPRDNIAALVDYIKNPTTYDGFVE 85 (129)
T ss_dssp HHHHHHHHHHHHHHTHHHHGGGC---CTTCSSSCSSHH------------HHHTSSSCCCSHHHHHHHHHSCBCTTSCSB
T ss_pred cccHHHHHHHHHhhhHHhcCCCC---CCCCCCcccCHH------------HHHhcCCccchHHHHHHHHhCCcccccchh
Confidence 35678999999999999999753 346888753110 000111234678899999998753
Q ss_pred -------CCCCCCC-CCCCCCCHHHHHHHHHHHHhhc
Q 033769 83 -------YIPGTKM-VFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 83 -------~~~~~~m-~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
..+...| +| ..+|++||++|++||+++.
T Consensus 86 ~~~~~~~~~~~~~Mp~~-~~Ls~~ei~~l~~Yl~~l~ 121 (129)
T 1f1c_A 86 ISELHPSLKSSDIFPKM-RNISEDDLYNVAGYILLQP 121 (129)
T ss_dssp CTTTSCSTTCTTTCGGG-SSCCHHHHHHHHHHHHHHH
T ss_pred HhhhhhcccCCCCCCCC-CCCCHHHHHHHHHHHHHcC
Confidence 1234556 47 6788999999999999875
No 36
>3oa8_B SOXX; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_B*
Probab=99.68 E-value=1.6e-16 Score=105.49 Aligned_cols=87 Identities=23% Similarity=0.377 Sum_probs=65.6
Q ss_pred CCCCCCHHHHHHHHHh----------------hCcccccccCCCC--CCCCCCCCCccC-CCCCCCCCCccchhccccce
Q 033769 6 EAPPGNPKAGEKIFKT----------------KCAQCHTVVKGAG--HKQGPNLNGLFG-RQSGTTPGYSYSAANKGMAV 66 (112)
Q Consensus 6 ~~~~~~~~~G~~lf~~----------------~C~~CH~~~~~~~--~~~gP~l~~~~~-~~~~~~~~~~~~~~~~~~~~ 66 (112)
....++.++|+.+|.. +|++||+.++.+. +.+||+|.++.. +.
T Consensus 92 g~~~gd~~~Ge~lf~~G~g~~~~d~g~~ly~~~CaaCHg~dG~G~~~G~~GP~Lag~~~~r~------------------ 153 (208)
T 3oa8_B 92 GPVLGSWKDGAKVAQNGRGGQFSDPPGTVSGGNCYACHQLDPKEVSYGTLGPSLVGYGRERN------------------ 153 (208)
T ss_dssp SCSCCCHHHHHHHHHCCCSSSTTSCTTCCCCCCGGGTCCCSTTCCCCCSSSCCCTTHHHHTT------------------
T ss_pred CcCccCHHHHHHHHhccccccccchhhhhhcccchhhCCCCCcCCCCCCcCCCccccccccc------------------
Confidence 3456899999999986 7999999987652 467899998643 21
Q ss_pred eeCHHHHH---HHHhCCCCCCCCCCCC-CC--CCCCHHHHHHHHHHHHhhc
Q 033769 67 IWEEKTLY---DYLLNPKKYIPGTKMV-FP--GLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 67 ~~~~~~l~---~~l~~~~~~~~~~~m~-~~--~~l~~~ei~~l~ayl~sl~ 111 (112)
++.+.|. .+|.++....+++.|| |. +.||++||++|++||+++.
T Consensus 154 -~~~~~L~~~~~~I~~~~~~~p~~~MP~fa~~g~LSdeEIaaLaaYL~s~~ 203 (208)
T 3oa8_B 154 -FSAEDAKIAFAKVYDAQASLACSSMPRFGVNGVLTEQQIKDVVAYLFDPE 203 (208)
T ss_dssp -TCHHHHHHHHHHHHCGGGTSTTCSSCCTTTTTSSCHHHHHHHHHHHHCTT
T ss_pred -CCHHHHHHHHHHhhCccCCCCCCCCCcccccCCCCHHHHHHHHHHHHccC
Confidence 1445554 6677776666777774 76 5689999999999999875
No 37
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=99.68 E-value=1.4e-17 Score=95.66 Aligned_cols=81 Identities=21% Similarity=0.264 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033769 10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM 89 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m 89 (112)
+++.+|++||..+|+.||+.++.+ .+|.+..+ .+.+... ..++.+.|..+++++. ..|+
T Consensus 1 ~~~~~G~~l~~~~C~~CHg~~g~g---~~~~~~~~-------------~~~l~~~-~~~~~~~l~~~i~~g~----~~Mp 59 (85)
T 1gdv_A 1 ADLDNGEKVFSANCAACHAGGNNA---IMPDKTLK-------------KDVLEAN-SMNTIDAITYQVQNGK----NAMP 59 (85)
T ss_dssp CHHHHHHHHHHHHTHHHHGGGCCS---SSTTSCCC-------------HHHHHHT-TCCSHHHHHHHHHHCB----TTBC
T ss_pred CcHHHHHHHHHHhhHhhCCCCcCC---CCCCCCCC-------------cHHHHHc-cCCCHHHHHHHHHhCc----CCCC
Confidence 357899999999999999987543 23322111 1111111 1236788999998775 2333
Q ss_pred CCCCCCCHHHHHHHHHHHHhhc
Q 033769 90 VFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 90 ~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
+|...+|++||++|++||+++.
T Consensus 60 ~~~~~ls~~ei~~l~~yl~~~~ 81 (85)
T 1gdv_A 60 AFGGRLVDEDIEDAANYVLSQS 81 (85)
T ss_dssp CCTTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHh
Confidence 5776789999999999999875
No 38
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=99.68 E-value=3.6e-17 Score=94.53 Aligned_cols=83 Identities=25% Similarity=0.324 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033769 10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM 89 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m 89 (112)
+++++|++||..+|+.||+.++ ..++|.+....... ..|... ..+.+.|...++++.. .|+
T Consensus 1 gd~~~G~~l~~~~C~~CHg~~g---~~~~p~~~~~~~~~----~~~l~~--------~~~~~~l~~~i~~g~~----~Mp 61 (88)
T 3dmi_A 1 GDVGAGEQIFNANCAACHAGGQ---NVIMPEKTLEKEAL----DQYLAG--------GRTEKSIISQVTGGKN----AMP 61 (88)
T ss_dssp CCHHHHHHHHHHHTHHHHGGGC---CSSSTTSCSSHHHH----HHHSTT--------CSSHHHHHHHHHHCBT----TBC
T ss_pred CcHHHHHHHHHHHHHHhCCCCC---CCcCCCCCCCHHHH----HHHHhc--------CCCHHHHHHHHHcCcC----CCC
Confidence 4788999999999999999653 34566554321100 000000 0156788888887752 344
Q ss_pred CCCCCCCHHHHHHHHHHHHhhc
Q 033769 90 VFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 90 ~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
+|...+|++||++|++||+++.
T Consensus 62 ~~~~~ls~~ei~~l~~yl~~~~ 83 (88)
T 3dmi_A 62 AFGGRLSDEEIANVAAYVLASA 83 (88)
T ss_dssp CCTTTSCHHHHHHHHHHHHHHH
T ss_pred CcCCCCCHHHHHHHHHHHHHHh
Confidence 6777789999999999999874
No 39
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=99.67 E-value=5.8e-17 Score=93.81 Aligned_cols=83 Identities=22% Similarity=0.291 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCcc--CCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCC
Q 033769 10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLF--GRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGT 87 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 87 (112)
+++++|++||..+|+.||+.++.+ ...+|.|.... .+. ..+. ..+.+.|..++.++.. .
T Consensus 1 g~~~~G~~l~~~~C~~CHg~~g~g-~~~~P~L~~~~~~~~l----~~~~----------~~~~~~l~~~i~~g~~----~ 61 (89)
T 1f1f_A 1 GDVAAGASVFSANCAACHMGGRNV-IVANKTLSKSDLAKYL----KGFD----------DDAVAAVAYQVTNGKN----A 61 (89)
T ss_dssp -CHHHHHHHHHHHTHHHHGGGCCS-SSTTCCSSHHHHHHHS----TTTT----------TCHHHHHHHHHHHCBT----T
T ss_pred CcHHHHHHHHHHHhHHhCCCCCCC-CcCCCCCCHHHHHHHh----hccC----------ccCHHHHHHHHHcCCC----C
Confidence 468899999999999999998644 34578885310 000 0000 0126778888877642 2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhc
Q 033769 88 KMVFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 88 ~m~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
|++|...+|++||++|++||+++.
T Consensus 62 Mp~~~~~ls~~ei~~l~~yl~~~~ 85 (89)
T 1f1f_A 62 MPGFNGRLSPLQIEDVAAYVVDQA 85 (89)
T ss_dssp BCCCTTTSCHHHHHHHHHHHHHHH
T ss_pred CCccccCCCHHHHHHHHHHHHHHh
Confidence 336777789999999999999875
No 40
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=99.67 E-value=3.8e-17 Score=92.96 Aligned_cols=76 Identities=14% Similarity=0.214 Sum_probs=54.5
Q ss_pred HHHHHHh-hCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCC-CCCCCC-CC
Q 033769 15 GEKIFKT-KCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKY-IPGTKM-VF 91 (112)
Q Consensus 15 G~~lf~~-~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~m-~~ 91 (112)
|++||.. +|+.||+.++. .+||+|.++..+.... +.++|..+|+++... .+...| +|
T Consensus 1 ~~~l~~~~~C~~CHg~~g~---~~gP~l~~~~~~~~~~-----------------~~~~l~~~i~~g~~~~~~~~~Mp~~ 60 (79)
T 2d0s_A 1 DEALAKAKGCMACHAIDKK---LVGPSYKDVAKKYTEA-----------------DVPKLVEKVKKGGAGVWGPVPMPPH 60 (79)
T ss_dssp CHHHHHHTTGGGTCCSSSC---SSSCCHHHHHHHCCGG-----------------GHHHHHHHHHHCBCSSSCSSCBCCC
T ss_pred CHhHHhcCCChhhcCCCCC---CCCCCHHHHHHHHccc-----------------cHHHHHHHHhcCCCCCCCCCCCCCC
Confidence 6789974 79999998753 3689888754433110 356899899888542 233446 46
Q ss_pred CCCCCHHHHHHHHHHHHhhc
Q 033769 92 PGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 92 ~~~l~~~ei~~l~ayl~sl~ 111 (112)
..||++||++|++||++|+
T Consensus 61 -~~Ls~~ei~~l~~yl~~lk 79 (79)
T 2d0s_A 61 -PQVAEADIEKIVRWVLTLK 79 (79)
T ss_dssp -TTSCHHHHHHHHHHHTTCC
T ss_pred -CCCCHHHHHHHHHHHHhCc
Confidence 4678999999999999874
No 41
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=99.67 E-value=7.8e-17 Score=93.74 Aligned_cols=85 Identities=21% Similarity=0.288 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCcc--CCCCCCCCCCccchhccccceeeCH-HHHHHHHhCCCCCCCC
Q 033769 10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLF--GRQSGTTPGYSYSAANKGMAVIWEE-KTLYDYLLNPKKYIPG 86 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~ 86 (112)
+++++|++||..+|+.||+.++.+. ...|.+.... ......... ..+. +.|..+++++..
T Consensus 1 ~d~~~G~~l~~~~C~~CHg~~g~g~-~~~~~~~~~~~~~~l~~~~~~------------~~~~~~~~~~~i~~g~~---- 63 (93)
T 3dr0_A 1 ADAAAGAQVFAANCAACHAGGNNAV-MPTKTLKADALKTYLAGYKDG------------SKSLEEAVAYQVTNGQG---- 63 (93)
T ss_dssp CCHHHHHHHHHHHTHHHHGGGCCSS-STTCCSSHHHHHHHSTTTTTT------------SSCHHHHHHHHHHHCBT----
T ss_pred CcHHHHHHHHHHHhHHhcCCCCCCC-CCCcccCcchHHHHHhhcccc------------cccHHHHHHHHHHcCCC----
Confidence 4789999999999999999875332 2223332100 000000000 0134 778888887752
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769 87 TKMVFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 87 ~~m~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
.|++|...+|++||++|++||+++.
T Consensus 64 ~Mp~~~~~ls~~ei~~l~~yl~~l~ 88 (93)
T 3dr0_A 64 AMPAFGGRLSDADIANVAAYIADQA 88 (93)
T ss_dssp TBCCCBTTBCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3346767789999999999999875
No 42
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=99.66 E-value=1.8e-17 Score=94.74 Aligned_cols=78 Identities=15% Similarity=0.158 Sum_probs=55.7
Q ss_pred HHHHHH-hhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCC-CCCCC-CC
Q 033769 15 GEKIFK-TKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYI-PGTKM-VF 91 (112)
Q Consensus 15 G~~lf~-~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~m-~~ 91 (112)
|++||. .+|+.||+.++. .++|.|.++..+..+. ..+.++|..+|+++.... +...| +|
T Consensus 1 ~~~l~~~~~C~~CHg~~g~---~~gp~l~~~~~~~~~~---------------~~~~~~l~~~i~~g~~~~~~~~~Mp~~ 62 (81)
T 1a56_A 1 DADLAKKNNCIACHQVETK---VVGPALKDIAAKYADK---------------DDAATYLAGKIKGGSSGVWGQIPMPPN 62 (81)
T ss_dssp CHHHHHHHSHHHHBCSSCB---SSSCCHHHHHHHHTTS---------------SSHHHHHHHHHHHCBSSSSSSCCBCSC
T ss_pred CHhHHhccCchhhCCCCCC---cCCcCHHHHHHHhcCC---------------ccHHHHHHHHHHcCCCCCCCCCCCCCC
Confidence 578998 579999998753 4678887765332211 013678999998876543 22456 57
Q ss_pred CCCCCHHHHHHHHHHHHhhc
Q 033769 92 PGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 92 ~~~l~~~ei~~l~ayl~sl~ 111 (112)
..||++||++|++||++|+
T Consensus 63 -~~Ls~~ei~~l~~yl~~lk 81 (81)
T 1a56_A 63 -VNVSDADAKALADWILTLK 81 (81)
T ss_dssp -CSSSSHHHHHHHHHHHHHC
T ss_pred -CCCCHHHHHHHHHHHHhCC
Confidence 6778999999999999874
No 43
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=99.66 E-value=2.3e-16 Score=91.30 Aligned_cols=82 Identities=18% Similarity=0.274 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhcccc-ceeeCHHHHHHHHhCCCCCCCCCC
Q 033769 10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGM-AVIWEEKTLYDYLLNPKKYIPGTK 88 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~ 88 (112)
+++++|++||..+|+.||+.++.+. ...|.|... .+... .-.++.+.|..+++++. ..|
T Consensus 2 ~~~~~G~~l~~~~C~~CHg~~g~~~-~~~~~l~~~---------------~~~~~~~~~~~~~~l~~~i~~g~----~~M 61 (89)
T 1c6r_A 2 ADLALGKQTFEANCAACHAGGNNSV-IPDHTLRKA---------------AMEQFLQGGFNLEAITYQVENGK----GAM 61 (89)
T ss_dssp CCHHHHHHHHHHHTHHHHGGGCCSS-STTCCSSHH---------------HHHHHSTTCSSHHHHHHHHHHCB----TTB
T ss_pred ccHHHHHHHHHHHHHHHcCCCCCCC-CCCcCcCch---------------hHHHHhcCCCCHHHHHHHHHcCC----CCC
Confidence 5789999999999999999865321 112333210 00000 00125778888888774 233
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhc
Q 033769 89 MVFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 89 m~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
++|...+|++||++|++||+++.
T Consensus 62 p~~~~~ls~~ei~~l~~yl~~~~ 84 (89)
T 1c6r_A 62 PAWSGTLDDDEIAAVAAYVYDQA 84 (89)
T ss_dssp CCCTTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHHc
Confidence 46777789999999999999875
No 44
>2c8s_A Cytochrome C-L; HAEM, heme, electron transport, metal-binding; HET: HEM; 1.6A {Methylobacterium extorquens} SCOP: a.3.1.1
Probab=99.66 E-value=5.4e-16 Score=100.51 Aligned_cols=81 Identities=22% Similarity=0.397 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033769 10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM 89 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m 89 (112)
+++.+|++||..+|+.||+.++.+ ..+|+|.+..- .+ +..++.+.|..+|+++.. +.|+
T Consensus 52 ~~~~~G~~lf~~~Ca~CHg~~g~G--~~gP~L~~~~~---------~~-------~~~~~~~~l~~~i~~G~~---g~MP 110 (172)
T 2c8s_A 52 SCLRNGESLFATSCSGCHGHLAEG--KLGPGLNDNYW---------TY-------PSNTTDVGLFATIFGGAN---GMMG 110 (172)
T ss_dssp HHHHHHHHHHHHHTHHHHCTTSSC--SSSCCSSSSCC---------SS-------GGGGSHHHHHHHHHTCTT---SSSC
T ss_pred HHHHHHHHHHHhhhHHhCCCCCCC--CCCCCCccccc---------cc-------cccCCHHHHHHHHHhCCC---CCCC
Confidence 456899999999999999997644 34798875311 11 112367889999998852 3344
Q ss_pred CCCCCCCHHHHHHHHHHHHhhc
Q 033769 90 VFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 90 ~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
+|...||++||++|++||+++.
T Consensus 111 ~~~~~Lsd~ei~~laaYl~sl~ 132 (172)
T 2c8s_A 111 PHNENLTPDEMLQTIAWIRHLY 132 (172)
T ss_dssp SCCCCSCHHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHhc
Confidence 6877889999999999999986
No 45
>2d0w_A Cytochrome CL; electron transfer, electron transport; HET: HEM; 1.98A {Hyphomicrobium denitrificans}
Probab=99.66 E-value=3.9e-16 Score=100.93 Aligned_cols=82 Identities=22% Similarity=0.363 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCC
Q 033769 9 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTK 88 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 88 (112)
.++..+|++||..+|+.||+.++.+ ..+|.|.+....+ . ..++.++|..+|+++.. +.|
T Consensus 45 ~~~~~~G~~lf~~~Ca~CHg~~g~G--~~gP~L~~~~~~~---------~-------~~~~~~~l~~~i~~G~~---~~M 103 (170)
T 2d0w_A 45 AGCLPKGEEIYLESCSGCHGHIGEG--KVGPGLNDSYWTY---------P-------KNTTDKGLFETIFGGAN---GMM 103 (170)
T ss_dssp GGGHHHHHHHHHHHTHHHHCTTSCC--SSSCCSSSSCCSS---------G-------GGGSHHHHHHHHHHCCS---TTC
T ss_pred HHHHHHHHHHHHhhhHHhCCCCCCC--CCCCCCccchhhc---------c-------ccCCHHHHHHHHHcCCC---CCC
Confidence 4567899999999999999997643 3579887642111 0 12367889999988752 233
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhc
Q 033769 89 MVFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 89 m~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
++|...||++||++|++||+++.
T Consensus 104 p~~~~~Ls~~ei~~l~aYl~sl~ 126 (170)
T 2d0w_A 104 GPHGQDLELDNMLKLIAWIRHIQ 126 (170)
T ss_dssp CCCTTTSCHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcc
Confidence 46877889999999999999986
No 46
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=99.65 E-value=4.3e-17 Score=93.83 Aligned_cols=77 Identities=21% Similarity=0.336 Sum_probs=54.8
Q ss_pred HHHHHHHh-hCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCC----CCC
Q 033769 14 AGEKIFKT-KCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIP----GTK 88 (112)
Q Consensus 14 ~G~~lf~~-~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~----~~~ 88 (112)
+|++||.+ +|+.||+.++. ..+|.|..+..+..+ +.++|..|+..+..... ...
T Consensus 2 ~G~~l~~~~~C~~CHg~~g~---g~gp~l~~l~~~~~~------------------~~~~l~~~~~~~~~~~~~~~~~~~ 60 (87)
T 2zxy_A 2 DGKAIFQQKGCGSCHQANVD---TVGPSLKKIAQAYAG------------------KEDQLIKFLKGEAPAIVDPAKEAI 60 (87)
T ss_dssp CHHHHHHHTTGGGTCCSSSC---SSSCCHHHHHHHTTT------------------CHHHHHHHHTTCSCCSSCGGGHHH
T ss_pred ChHHHHhcCCchhhcCCCCC---CCCCChHHHHHHhcC------------------CHHHHHHHHhcccccccCCCCCCC
Confidence 69999998 79999998753 357887765443311 35678888877654322 134
Q ss_pred C-CC---CCCCCHHHHHHHHHHHHhhc
Q 033769 89 M-VF---PGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 89 m-~~---~~~l~~~ei~~l~ayl~sl~ 111 (112)
| +| ...+|++||++|++||++|+
T Consensus 61 Mp~~~~~~~~ls~~ei~~l~~yl~sl~ 87 (87)
T 2zxy_A 61 MKPQLTMLKGLSDAELKALADFILSHK 87 (87)
T ss_dssp HGGGGGGGGGCCHHHHHHHHHHHHTC-
T ss_pred CCCccccccCCCHHHHHHHHHHHHhcC
Confidence 5 56 45678999999999999874
No 47
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=99.65 E-value=4.8e-16 Score=90.19 Aligned_cols=82 Identities=16% Similarity=0.257 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccc-cceeeCHHHHHHHHhCCCCCCCCCC
Q 033769 10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKG-MAVIWEEKTLYDYLLNPKKYIPGTK 88 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~ 88 (112)
+++++|++||..+|+.||+.++.+. ..+|.|.. ..+.. ..-.++.+.|..+++++. +.|
T Consensus 1 ~~~~~G~~l~~~~C~~CHg~~g~g~-~~~~~l~~---------------~~~~~~~~~~~~~~~l~~~i~~g~----~~M 60 (90)
T 1cyi_A 1 ADLALGAQVFNGNCAACHMGGRNSV-MPEKTLDK---------------AALEQYLDGGFKVESIIYQVENGK----GAM 60 (90)
T ss_dssp CCHHHHHHHHHHHTHHHHGGGCCSS-STTSCSSH---------------HHHHHHSTTCSSHHHHHHHHHHCB----TTB
T ss_pred CcHHHHHHHHHHHHHHhCCCCCCCC-CCCCCCCh---------------HHHHHHhcCCCCHHHHHHHHhcCC----CCC
Confidence 4688999999989999999875332 12233321 00000 000135778888888774 233
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhc
Q 033769 89 MVFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 89 m~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
++|...+|++||++|++||+++.
T Consensus 61 p~~~~~ls~~ei~~l~~yl~~~~ 83 (90)
T 1cyi_A 61 PAWADRLSEEEIQAVAEYVFKQA 83 (90)
T ss_dssp CCCTTTSCHHHHHHHHHHHHHHH
T ss_pred CcccccCCHHHHHHHHHHHHhcc
Confidence 36777789999999999999875
No 48
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=99.64 E-value=2.5e-16 Score=91.63 Aligned_cols=81 Identities=16% Similarity=0.158 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCc--cCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCC
Q 033769 10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGL--FGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGT 87 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 87 (112)
+++++|++||..+|+.||+.++.+ ...+|.|... ..+.. + .++.+.|..+|+++. +.
T Consensus 4 ~~~~~G~~l~~~~C~~CHg~~g~g-~~~~p~l~~~~~~~~~~---------------~-~~~~~~l~~~i~~g~----~~ 62 (91)
T 1ls9_A 4 ELLADGKKVFAGNCAACHLGGNNS-VLADKTLKKDAIEKYLE---------------G-GLTLEAIKYQVNNGK----GA 62 (91)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGCCS-SSTTSCSSHHHHHHHST---------------T-CSCHHHHHHHHHHCB----TT
T ss_pred HHHHHHHHHHHHHhHHhCCCCCCC-CCCCCCCCchhHHHhcc---------------C-CCCHHHHHHHHHcCc----CC
Confidence 457899999999999999986533 2234555421 00000 0 125778889988774 23
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhc
Q 033769 88 KMVFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 88 ~m~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
|++|...||++||++|++||+++.
T Consensus 63 Mp~~~~~ls~~ei~~l~~yl~~~~ 86 (91)
T 1ls9_A 63 MPAWADRLDEDDIEAVSNYVYDQA 86 (91)
T ss_dssp BCCCTTTSCHHHHHHHHHHHHHHH
T ss_pred CcchhhhCCHHHHHHHHHHHHHhc
Confidence 446777789999999999999875
No 49
>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0
Probab=99.63 E-value=2.5e-16 Score=93.51 Aligned_cols=82 Identities=21% Similarity=0.321 Sum_probs=54.4
Q ss_pred CCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCC
Q 033769 8 PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGT 87 (112)
Q Consensus 8 ~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 87 (112)
.+.+..+|++||..+|+.||+.++. ..+|.... ...++...+. .+.+.|...|+++.. .
T Consensus 15 ~~~~~~~G~~ly~~~Ca~CHg~~g~---~~~p~~~~-------------~~~~l~~~~~-~~~~~l~~~i~~G~~----~ 73 (99)
T 3dp5_A 15 TAVPNSGGGELFATHCAGCHPQGGN---TVHPEKTL-------------ARARREANGI-RTVRDVAAYIRNPGP----G 73 (99)
T ss_dssp GCCCCCCHHHHHHHHTTTTSGGGCC---SSSTTCCC-------------CHHHHHHTTC-CSHHHHHHHTTSCCT----T
T ss_pred CcccHHHHHHHHHHHHHHhCCCCCC---CCCCCCcc-------------ChHHHHhcCc-cCHHHHHHHHHcCCC----C
Confidence 3456789999999999999998652 23341110 0111111111 267789999988842 3
Q ss_pred CCCCCC-CCCHHHHHHHHHHHHhh
Q 033769 88 KMVFPG-LKKPQDRADLIAYLKES 110 (112)
Q Consensus 88 ~m~~~~-~l~~~ei~~l~ayl~sl 110 (112)
|++|.. .||++||++|++||++.
T Consensus 74 MP~~~~~~Lsd~ei~~l~~Yi~~~ 97 (99)
T 3dp5_A 74 MPAFGEAMIPPADALKIGEYVVAS 97 (99)
T ss_dssp SCCCCTTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHh
Confidence 446876 78999999999999863
No 50
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=99.63 E-value=1e-16 Score=91.47 Aligned_cols=76 Identities=16% Similarity=0.191 Sum_probs=54.0
Q ss_pred HHHHh-hCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCC-CCCCCCCC
Q 033769 17 KIFKT-KCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPG-TKMVFPGL 94 (112)
Q Consensus 17 ~lf~~-~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~m~~~~~ 94 (112)
+||.. +|+.||+.++. .++|.|.++..+.... .++.++|..+|+++....++ ..||.. .
T Consensus 3 ~l~~~~~C~~CHg~~g~---g~gP~l~~~~~~~~~~---------------~~~~~~l~~~i~~g~~~~~~~~~Mp~~-~ 63 (80)
T 1ayg_A 3 QLAKQKGCMACHDLKAK---KVGPAYADVAKKYAGR---------------KDAVDYLAGKIKKGGSGVWGSVPMPPQ-N 63 (80)
T ss_dssp TTTTSSSSGGGCCSSCC---SSSCCHHHHHHHCSSC---------------TTHHHHHHHHHHSCBCSSSCSCCBCCC-C
T ss_pred hhHhhCCchhhcCCCCC---CCCCChHHHHHHhcCC---------------ccHHHHHHHHHHcCCCCCCCCCCCCCC-C
Confidence 57764 69999998753 3789988765443211 12568899999998765433 336433 6
Q ss_pred CCHHHHHHHHHHHHhhc
Q 033769 95 KKPQDRADLIAYLKEST 111 (112)
Q Consensus 95 l~~~ei~~l~ayl~sl~ 111 (112)
+|++||++|++||++++
T Consensus 64 Lsd~ei~~l~~yl~~lk 80 (80)
T 1ayg_A 64 VTDAEAKQLAQWILSIK 80 (80)
T ss_dssp CCHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 78999999999999874
No 51
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}
Probab=99.63 E-value=5.8e-17 Score=93.72 Aligned_cols=83 Identities=18% Similarity=0.269 Sum_probs=53.7
Q ss_pred CCCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCC
Q 033769 7 APPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPG 86 (112)
Q Consensus 7 ~~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 86 (112)
...+++.+|++||..+|+.||+.++.+. ...|+|.+. ... +..+.+.+...++++..
T Consensus 4 ~~~~~~~~G~~l~~~~C~~CHg~~~~g~-~~~~~l~~~-------------~~~-----~~~~~~~~~~~i~~G~~---- 60 (87)
T 2zon_G 4 APAQLDPAGEKLYRSACVVCHASGVANA-PKLGDKQAW-------------APF-----LAQGADALLATVLKGKG---- 60 (87)
T ss_dssp ---CCCHHHHHHHHHTTHHHHTTTGGGC-CCTTCHHHH-------------HHH-----HHHCHHHHHHHHHHCBT----
T ss_pred cchhhhhHHHHHHHHHhHHHcCCCCCCC-CCCCCHHHH-------------HHH-----HhcCHHHHHHHHHcCcC----
Confidence 3457788999999999999999875332 112333221 000 00135667777776652
Q ss_pred CCCCCCC-CCCHHHHHHHHHHHHhhcC
Q 033769 87 TKMVFPG-LKKPQDRADLIAYLKESTA 112 (112)
Q Consensus 87 ~~m~~~~-~l~~~ei~~l~ayl~sl~~ 112 (112)
.|++|.. .+|++||++|++||+++++
T Consensus 61 ~Mp~~~~~~ls~~ei~~l~~yl~~~~~ 87 (87)
T 2zon_G 61 AMPPRGGTAADEATLRAAVAYMMDAAR 87 (87)
T ss_dssp TBCGGGGCCCCHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcC
Confidence 3335765 7889999999999999875
No 52
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=99.60 E-value=2.6e-15 Score=105.22 Aligned_cols=84 Identities=19% Similarity=0.227 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHhhCcccccccCCCCCCC-CCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCC
Q 033769 9 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQ-GPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGT 87 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~~~~~~~-gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 87 (112)
.++.++|+++|..+|+.||+.++.+.... +|+|.+......+ .+.++|.+.|+++.. +.
T Consensus 219 ~~~~~~G~~lf~~~Ca~CHg~~g~G~~~~~~P~L~~~~~~~~~-----------------~~~~~l~~~i~~g~~---g~ 278 (311)
T 3mk7_C 219 DADLSAGKNVYAQTCAVCHGQGGEGMAALGAPKLNSAAGWIYG-----------------SSLGQLQQTIRHGRN---GQ 278 (311)
T ss_dssp CCCHHHHHHHHHHTTHHHHCTTSCCBTTTTBCCSSCGGGCSSC-----------------CSHHHHHHHHHHCBC---CE
T ss_pred cccchhhHHHHhhhHHhcCCCCCCCCcccCCCCCCcchhhhcc-----------------CCHHHHHHHHHhCcc---cc
Confidence 37789999999999999999987654443 7988861111111 157789999987742 33
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcC
Q 033769 88 KMVFPGLKKPQDRADLIAYLKESTA 112 (112)
Q Consensus 88 ~m~~~~~l~~~ei~~l~ayl~sl~~ 112 (112)
|++|...||++||++|++||++|+.
T Consensus 279 MP~~~~~Ls~~ei~~laaYl~sl~~ 303 (311)
T 3mk7_C 279 MPAQQQYLGDDKVHLLAAYVYSLSQ 303 (311)
T ss_dssp ECCCTTTTHHHHHHHHHHHHHHHCC
T ss_pred CcccccCCCHHHHHHHHHHHHHcCC
Confidence 4467778899999999999999863
No 53
>2yev_B Cytochrome C oxidase subunit 2; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Probab=99.34 E-value=2.1e-16 Score=111.88 Aligned_cols=87 Identities=28% Similarity=0.430 Sum_probs=67.1
Q ss_pred HHHHHHHHhhCcccccccCCCC-CCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCCC-
Q 033769 13 KAGEKIFKTKCAQCHTVVKGAG-HKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKMV- 90 (112)
Q Consensus 13 ~~G~~lf~~~C~~CH~~~~~~~-~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m~- 90 (112)
++|+++|+++|++||+.++.+. ...+|+|.++..+.... .....++.++|..+|+++....+++.||
T Consensus 237 ~~G~~lf~~~Ca~CHg~~g~G~~~~~gP~L~gi~~r~~~~-----------~G~~~~~~~~L~~~I~~g~~~~~~~~MP~ 305 (337)
T 2yev_B 237 ERGQQVFQQNCAACHGVARSMPPAVIGPELGLWGNRTSLG-----------AGIVENTPENLKAWIRDPAGMKPGVKMPG 305 (337)
Confidence 7999999999999999987542 35799999865543211 0001247889999999998777777785
Q ss_pred CCCCCCHHHHHHHHHHHHhhc
Q 033769 91 FPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 91 ~~~~l~~~ei~~l~ayl~sl~ 111 (112)
| ..+|++|+++|++||++|+
T Consensus 306 ~-~~LsdeEi~aL~aYL~sL~ 325 (337)
T 2yev_B 306 F-PQLSEEDLDALVRYLEGLK 325 (337)
Confidence 7 6678999999999999986
No 54
>1c52_A Cytochrome-C552; electron transport protein, MAD, thermostability; HET: HEM; 1.28A {Thermus thermophilus} SCOP: a.3.1.1 PDB: 1qyz_A* 1r0q_A* 2fwl_A* 1foc_A* 1dt1_A*
Probab=99.56 E-value=6.9e-16 Score=95.76 Aligned_cols=81 Identities=21% Similarity=0.170 Sum_probs=56.4
Q ss_pred HHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCC-------CCC
Q 033769 14 AGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKY-------IPG 86 (112)
Q Consensus 14 ~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-------~~~ 86 (112)
+|++||.. |+.||+.++.+....+|+|.+....... ...+.++|...|.++... .+.
T Consensus 3 ~G~~ly~~-Ca~CHg~~g~G~~~~~P~L~~~~~~~~~---------------~~~~~~~l~~~i~~g~~g~~~~~g~~~~ 66 (131)
T 1c52_A 3 DGAKIYAQ-CAGCHQQNGQGIPGAFPPLAGHVAEILA---------------KEGGREYLILVLLYGLQGQIEVKGMKYN 66 (131)
T ss_dssp CHHHHTHH-HHHHHCTTSCCBTTTBCCCTTHHHHHHT---------------STTHHHHHHHHHHHCEEEEEEETTEEEE
T ss_pred cHHHHHHH-HHHhcCCCCCCCCCCCCCCCCCcccccc---------------ccCCHHHHHHHHHhcccccccccCCccC
Confidence 69999999 9999999876654567888764210000 001567888888877431 112
Q ss_pred CCC-CCCCCCCHHHHHHHHHHHHhhc
Q 033769 87 TKM-VFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 87 ~~m-~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
..| +|. .||++||++|++||+++.
T Consensus 67 ~~MP~~~-~Lsd~ei~~l~~Yl~~~~ 91 (131)
T 1c52_A 67 GVMSSFA-QLKDEEIAAVLNHIATAW 91 (131)
T ss_dssp EEECCCT-TSCHHHHHHHHHHHHHTT
T ss_pred CCCCCcc-cCCHHHHHHHHHHHHHHc
Confidence 445 576 788999999999999874
No 55
>1w5c_T Cytochrome C-550; photosynthesis, water oxidation, photosystem, membrane protein; HET: CL1 CLA PHO HEM HEC BCR; 3.2A {Thermosynechococcus elongatus} SCOP: i.5.1.1
Probab=99.56 E-value=1.1e-15 Score=97.99 Aligned_cols=87 Identities=18% Similarity=0.221 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCC------
Q 033769 9 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKK------ 82 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------ 82 (112)
.+++++|++||..+|+.||+.++.+ .+|.+........+..+. ..+.++|..+++++..
T Consensus 49 ~~~~~~G~~lf~~~Ca~CHg~~g~g---~~p~~~l~~~~l~g~~p~------------~~~~~~l~~~l~~~~~~~g~~~ 113 (163)
T 1w5c_T 49 EKQYLEGKRLFQYACASCHVGGITK---TNPSLDLRTETLALATPP------------RDNIEGLVDYMKNPTTYDGEQE 113 (163)
T ss_dssp HHHHHHHHHHHHHHTHHHHGGGCCS---SSTTSCCCHHHHHTSSSC------------CSSHHHHHHHHHSCBCTTSSSB
T ss_pred HHHHHHHHHHHHHhhHHhCCCCCCC---CCCCcCCCchhhccCCCC------------cccHHHHHHHHhCccccccchh
Confidence 3457899999999999999976533 233221000000000000 1146789999988643
Q ss_pred -------CCCCCCC-CCCCCCCHHHHHHHHHHHHhhc
Q 033769 83 -------YIPGTKM-VFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 83 -------~~~~~~m-~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
......| +| ..|||+||++|++||++++
T Consensus 114 ~~~~~~~~~~~~~Mp~~-~~Lsd~ei~~laaYl~sl~ 149 (163)
T 1w5c_T 114 IAEVHPSLRSADIFPKM-RNLTEKDLVAIAGHILVEP 149 (163)
T ss_dssp CTTTSCCSTTTTTSGGG-TTCCHHHHHHHHHHHHHHH
T ss_pred hhhccccccccCcCCCC-CCCCHHHHHHHHHHHHHcc
Confidence 1112356 47 5688999999999999875
No 56
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*
Probab=99.55 E-value=1.1e-15 Score=87.55 Aligned_cols=78 Identities=12% Similarity=0.134 Sum_probs=49.1
Q ss_pred CHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCCC
Q 033769 11 NPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKMV 90 (112)
Q Consensus 11 ~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m~ 90 (112)
++..|++||..+|+.||+.++.+ +|.+..+..+. +.+. .+.+.|...++++.. .|++
T Consensus 2 ~~~~G~~ly~~~Ca~CHg~~~~g----~p~~~~~~~~~----------~~l~-----~~~~~l~~~i~~G~~----~Mp~ 58 (81)
T 1kx2_A 2 DLQDAEAIYNKACTVCHSMGVAG----APKSHNTADWE----------PRLA-----KGVDNLVKSVKTGLN----AMPP 58 (81)
T ss_dssp CCSCHHHHHHHSTTSSTTTTGGG----CCCTTCSTTTH----------HHHT-----TCSTTHHHHHHHTCT----TSCG
T ss_pred ccccHHHHHHHHHHHHcCCCCCC----CCCCCChhhhh----------hhhh-----cCHHHHHHHHHhCcC----CCCC
Confidence 34579999999999999975422 45554321110 0000 023456666666653 2335
Q ss_pred CCC--CCCHHHHHHHHHHHHhhc
Q 033769 91 FPG--LKKPQDRADLIAYLKEST 111 (112)
Q Consensus 91 ~~~--~l~~~ei~~l~ayl~sl~ 111 (112)
|.. .|||+||++|++||++++
T Consensus 59 ~~~~~~Lsd~ei~~l~~Yi~~~~ 81 (81)
T 1kx2_A 59 GGMCTDCTDEDYKAAIEFMSKAK 81 (81)
T ss_dssp GGGCSSCCHHHHHHHHHHHTSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcC
Confidence 643 688999999999999863
No 57
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=99.55 E-value=2.4e-15 Score=85.50 Aligned_cols=73 Identities=23% Similarity=0.366 Sum_probs=50.9
Q ss_pred HHHHHHHh----hCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033769 14 AGEKIFKT----KCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM 89 (112)
Q Consensus 14 ~G~~lf~~----~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m 89 (112)
.|++||.+ +|+.||+.++.+ +|.|.....+.. . ..+.+.+...++++. +.|+
T Consensus 1 ~G~~ly~~g~~~~C~~CHg~~g~g----~P~l~~~~~~~~--------------~--~~~~~~l~~~i~~G~----~~Mp 56 (78)
T 1gks_A 1 DGESIYINGTAPTCSSCHDRGVAG----APELNAPEDWAD--------------R--PSSVDELVESTLAGK----GAMP 56 (78)
T ss_dssp CHHHHHHTSSSSCSHHHHTTTGGG----CCCTTCHHHHHT--------------S--CCCHHHHHHHHHHCB----TTBC
T ss_pred CHHHHHhhccccchhhhCCCCCCC----CCCCCCHHHhhh--------------c--cCCHHHHHHHHHcCC----CCCC
Confidence 48999997 899999987532 577754211000 0 014677888888774 2344
Q ss_pred CCCCCCCHHHHHHHHHHHHhh
Q 033769 90 VFPGLKKPQDRADLIAYLKES 110 (112)
Q Consensus 90 ~~~~~l~~~ei~~l~ayl~sl 110 (112)
+|...||++||++|++||+++
T Consensus 57 ~~~~~Lsd~ei~~l~~yi~~~ 77 (78)
T 1gks_A 57 AYDGRADREDLVKAIEYMLST 77 (78)
T ss_dssp CCBTTBCHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHhh
Confidence 687778999999999999874
No 58
>1mz4_A Cytochrome C550; PSII associated cytochrome, electron transport; HET: HEM; 1.80A {Thermosynechococcus elongatus} SCOP: a.3.1.1 PDB: 1izl_V* 1s5l_V* 2axt_V* 3a0b_V* 3a0h_V* 3arc_V* 3bz1_V* 3bz2_V* 3kzi_V* 3prq_V* 3prr_V*
Probab=99.54 E-value=2.2e-15 Score=93.96 Aligned_cols=85 Identities=19% Similarity=0.241 Sum_probs=53.7
Q ss_pred CCCHHHHHHHHHhhCcccccccCCCCCCCCCCCC--CccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCC---
Q 033769 9 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLN--GLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKY--- 83 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--- 83 (112)
.+++++|++||..+|+.||+.++.+... +|.+. .+.+.. + ..++.++|..+|++|...
T Consensus 23 ~~~~~~G~~ly~~~Ca~CHg~~g~g~~~-~~~l~~~~l~~~~----p------------~~~~~~~l~~~l~~p~~~~~~ 85 (137)
T 1mz4_A 23 EKQYLEGKRLFQYACASCHVGGITKTNP-SLDLRTETLALAT----P------------PRDNIEGLVDYMKNPTTYDGE 85 (137)
T ss_dssp HHHHHHHHHHHHHHTHHHHGGGCCTTCG-GGCCCHHHHHTSS----S------------CCSSHHHHHHHHHSCBCTTSS
T ss_pred hHHHHHHHHHHHhhhHHhcCCCCCCCCC-CccccccccccCC----C------------chhHHHHHHHHHhCchhhccc
Confidence 3467899999999999999987533211 12111 111100 0 012467899999885321
Q ss_pred ----------CCCCCC-CCCCCCCHHHHHHHHHHHHhhc
Q 033769 84 ----------IPGTKM-VFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 84 ----------~~~~~m-~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
.+...| +| ..||++||++|++||+++.
T Consensus 86 ~~~~~~~~~~~~~~~MP~~-~~Lsd~ei~alaaYl~~~~ 123 (137)
T 1mz4_A 86 QEIAEVHPSLRSADIFPKM-RNLTEKDLVAIAGHILVEP 123 (137)
T ss_dssp SBCTTTSCCGGGTTTSGGG-TTCCHHHHHHHHHHHHHHH
T ss_pred chhhhcccccccCCCCCCC-CCCCHHHHHHHHHHHHHcc
Confidence 123456 57 4478999999999999874
No 59
>1m70_A Cytochrome C4; electron transport, diheme protein; HET: HEC; 1.25A {Pseudomonas stutzeri} SCOP: a.3.1.4 a.3.1.4 PDB: 1etp_A* 1m6z_A*
Probab=99.53 E-value=3.6e-15 Score=97.19 Aligned_cols=82 Identities=23% Similarity=0.323 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHh--------hCcccccccCCCCCC-CCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCC
Q 033769 10 GNPKAGEKIFKT--------KCAQCHTVVKGAGHK-QGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNP 80 (112)
Q Consensus 10 ~~~~~G~~lf~~--------~C~~CH~~~~~~~~~-~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 80 (112)
+++.+|++||.. +|+.||+.++.+... .+|.|.+... .|..+.|..|....
T Consensus 98 ~~~~~G~~l~~~~~~~~~~~~C~~CHg~~g~g~~~~~~P~L~g~~~--------------------~~~~~~l~~~~~g~ 157 (190)
T 1m70_A 98 ALAKQGEKLFRGGKLDQGMPACTGCHAPNGVGNDLAGFPKLGGQHA--------------------AYTAKQLTDFREGN 157 (190)
T ss_dssp HHHHHHHHHHHHCBGGGTBCCSHHHHCTTSCCBGGGTBCCCTTCCH--------------------HHHHHHHHHHHHTS
T ss_pred cchhhHHHHHhCCCcccCCcchhhcCCCCCCCCCCCCCCCcCCCCH--------------------HHHHHHHHHHHhCC
Confidence 356899999998 899999998755433 5788875411 11344565565443
Q ss_pred CCCCCCC-CC-CCCCCCCHHHHHHHHHHHHhhc
Q 033769 81 KKYIPGT-KM-VFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 81 ~~~~~~~-~m-~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
+...+.. .| +|...||++||++|++||++|+
T Consensus 158 ~~~~~~~~~Mp~~~~~Ls~~ei~~l~~Yl~sl~ 190 (190)
T 1m70_A 158 RTNDGDTMIMRGVAAKLSNKDIEALSSYIQGLH 190 (190)
T ss_dssp CCTTTTTCHHHHHHTTCCHHHHHHHHHHHHTCC
T ss_pred CCCCCccccHHHHHHhCCHHHHHHHHHHHHhCc
Confidence 3333333 56 4767789999999999999984
No 60
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.53 E-value=5.1e-15 Score=112.53 Aligned_cols=82 Identities=20% Similarity=0.297 Sum_probs=64.7
Q ss_pred CCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCC
Q 033769 8 PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGT 87 (112)
Q Consensus 8 ~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 87 (112)
..+++++|+++|.++|+.||+.++.+....+|.|.++.. ++.++|..+|+++....+ .
T Consensus 589 ~~~~~~~G~~l~~~~C~~CHg~~g~g~~~~~P~L~~~~~---------------------~~~~~l~~~i~~g~~~~~-~ 646 (677)
T 1kb0_A 589 DPAKVEAGTMLYVANCVFCHGVPGVDRGGNIPNLGYMDA---------------------SYIENLPNFVFKGPAMVR-G 646 (677)
T ss_dssp CGGGHHHHHHHHHHHTHHHHCSTTTSCCSSSCCGGGSCH---------------------HHHHTHHHHHSSCTTGGG-T
T ss_pred ChhhHHHHHHHHhhhhhhhCCCCCcCCCCCCCCccccCc---------------------ccHHHHHHHHHcCCCCCC-C
Confidence 345679999999999999999987665567899986532 256789999998875432 2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhc
Q 033769 88 KMVFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 88 ~m~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
|++|...|+++||++|++||++|+
T Consensus 647 Mp~~~~~ls~~ei~~l~~Yl~~l~ 670 (677)
T 1kb0_A 647 MPDFTGKLSGDDVESLKAFIQGTA 670 (677)
T ss_dssp CCCCTTTSCTTHHHHHHHHHHHHH
T ss_pred CCcccccCCHHHHHHHHHHHHhcc
Confidence 446877789999999999999885
No 61
>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme; HET: HEM; 2.13A {Thiobacillus ferrooxidans} SCOP: a.3.1.4 a.3.1.4
Probab=99.52 E-value=3.3e-15 Score=96.80 Aligned_cols=79 Identities=22% Similarity=0.229 Sum_probs=54.5
Q ss_pred CCCCCHHHHHHHHHh--------hCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHh
Q 033769 7 APPGNPKAGEKIFKT--------KCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLL 78 (112)
Q Consensus 7 ~~~~~~~~G~~lf~~--------~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 78 (112)
...+.+++|++||.. +|+.||+.++.+ ...+|.|.+. ...++...|+
T Consensus 95 ~~~~~~~~G~~l~~~~~~~~~~~~C~~CHg~~g~g-~~~~P~L~~~------------------------~~~~~~~~l~ 149 (183)
T 1h1o_A 95 IKHAGAKEGKAIFNQGVTNEQIPACMECHGSDGQG-AGPFPRLAGQ------------------------RYGYIIQQLT 149 (183)
T ss_dssp CCCTTHHHHHHHHHHCBGGGTBCCTHHHHCTTSCC-BTTBCCCTTC------------------------CHHHHHHHHH
T ss_pred CchhhHHhHHHHHHcCCcccCCCcchhhCCCCCCC-CCCCCCCCCC------------------------CHHHHHHHHH
Confidence 345678999999998 899999998755 4567888753 2333444443
Q ss_pred CCCCC-CCCCCC-CCCCCCCHHHHHHHHHHHHhh
Q 033769 79 NPKKY-IPGTKM-VFPGLKKPQDRADLIAYLKES 110 (112)
Q Consensus 79 ~~~~~-~~~~~m-~~~~~l~~~ei~~l~ayl~sl 110 (112)
+.... .++..| +|...||++||++|++||++|
T Consensus 150 ~~~~g~~~~~~Mp~~~~~Ls~~ei~~l~~yl~sl 183 (183)
T 1h1o_A 150 YFHNGTRVNTLMNQIAKNITVAQMKDVAAYLSSL 183 (183)
T ss_dssp HHHHTSSCCHHHHHHHTTCCHHHHHHHHHHHHHC
T ss_pred HHHcCCCCCcchHHHHHhCCHHHHHHHHHHHHhC
Confidence 22111 112345 576678999999999999986
No 62
>3mk7_B Cytochrome C oxidase, CBB3-type, subunit O; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=99.50 E-value=1.8e-14 Score=94.37 Aligned_cols=82 Identities=23% Similarity=0.493 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHh-hCccccc--ccCC------------------------CCCCCCCCCCCccCCCCCCCCCCccchhcc
Q 033769 10 GNPKAGEKIFKT-KCAQCHT--VVKG------------------------AGHKQGPNLNGLFGRQSGTTPGYSYSAANK 62 (112)
Q Consensus 10 ~~~~~G~~lf~~-~C~~CH~--~~~~------------------------~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~ 62 (112)
....+|+.+|.+ .|..||+ +++- |.+.+||+|+++.+|+
T Consensus 51 ~~~~~Gr~iy~~eGC~~CHsQ~VR~~~~e~~r~G~~S~a~e~~yd~p~l~Gsgr~GPDLt~vG~R~-------------- 116 (203)
T 3mk7_B 51 ALQLEGRDLYIREGCVGCHSQMIRPFRAETERYGHYSVAGESVYDHPFLWGSKRTGPDLARVGGRY-------------- 116 (203)
T ss_dssp HHHHHHHHHHHHHTGGGTCCCCCCSSHHHHHHHSSCCCGGGGTTCSSCCCCSBCSSCCCTTCTTTS--------------
T ss_pred HHHHHHHHHHHHCChhhccCCCCCCCchhhhcccccccchhhhhccccccCCCCCCcChhhhhccC--------------
Confidence 345789999976 4999999 5432 2356788888876654
Q ss_pred ccceeeCHHHHHHHHhCCCCCCCCCCCC-CC----C--------------------------------CCCHHHHHHHHH
Q 033769 63 GMAVIWEEKTLYDYLLNPKKYIPGTKMV-FP----G--------------------------------LKKPQDRADLIA 105 (112)
Q Consensus 63 ~~~~~~~~~~l~~~l~~~~~~~~~~~m~-~~----~--------------------------------~l~~~ei~~l~a 105 (112)
+.+++..+|.+|+...|++.|| |. . +.+..|+++||+
T Consensus 117 ------s~~wl~~~I~dPq~v~PGS~MPay~~L~~~~~~~~~~~~~~~~l~~~gvpy~~~~i~~a~~~~~~~~e~~alvA 190 (203)
T 3mk7_B 117 ------SDDWHRAHLYNPRNVVPESKMPSYPWLVENTLDGKDTAKKMSALRMLGVPYTEEDIAGARDSVNGKTEMDAMVA 190 (203)
T ss_dssp ------CHHHHHHHHHCHHHHSTTCCCCCCTHHHHCBCCCTTHHHHHHHHHHTTCCCCHHHHTTSHHHHTTCBHHHHHHH
T ss_pred ------CHHHHHHHHhCccccCCCCCCCCCccccccccchHHHHHHHHHHHhcCCCCCHHHHHhHHHHhcchhHHHHHHH
Confidence 6789999999999999999886 54 0 122368899999
Q ss_pred HHHhhc
Q 033769 106 YLKEST 111 (112)
Q Consensus 106 yl~sl~ 111 (112)
||.+|.
T Consensus 191 YLq~Lg 196 (203)
T 3mk7_B 191 YLQVLG 196 (203)
T ss_dssp HHTTTT
T ss_pred HHHHhC
Confidence 998875
No 63
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1
Probab=99.47 E-value=9.6e-15 Score=84.03 Aligned_cols=79 Identities=10% Similarity=0.067 Sum_probs=47.6
Q ss_pred CHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCCC
Q 033769 11 NPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKMV 90 (112)
Q Consensus 11 ~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m~ 90 (112)
.+..|++||..+|+.||+.++.+ +|.+.....+. +.+.. ....+.+...+.++.. .|++
T Consensus 3 ~~~~G~~ly~~~Ca~CHg~~~~G----~p~~~~~~~~~----------~~l~~---~~~~~~l~~~i~~G~~----~MP~ 61 (83)
T 1cc5_A 3 GARSGDDVVAKYCNACHGTGLLN----APKVGDSAAWK----------TRADA---KGGLDGLLAQSLSGLN----AMPP 61 (83)
T ss_dssp CSSCSHHHHHHTTHHHHTTTTTT----CCCTTCHHHHH----------HHHHH---HTSSTTTHHHHHHCBT----TBCS
T ss_pred hhHHHHHHHHHHHHHHCcCCCCC----CCCCCCHHHHH----------HHhhc---ccCHHHHHHHHHcCcc----CCCC
Confidence 44579999999999999975422 35543311000 00000 0012245566666653 3446
Q ss_pred CCC--CCCHHHHHHHHHHHHhh
Q 033769 91 FPG--LKKPQDRADLIAYLKES 110 (112)
Q Consensus 91 ~~~--~l~~~ei~~l~ayl~sl 110 (112)
|.. .|||+||++|++||+++
T Consensus 62 ~~~~~~Lsd~ei~~v~~yi~~~ 83 (83)
T 1cc5_A 62 KGTCADCSDDELKAAIGKMSGL 83 (83)
T ss_dssp SSSCSSCCHHHHHHHHHHHHCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhC
Confidence 765 68999999999999864
No 64
>2xts_B Cytochrome; oxidoreductase-electron transport complex, SOX system, sulfa oxidation, molybdenum cofactor, heme, electron transfer; HET: MTE HEC; 1.33A {Paracoccus pantotrophus}
Probab=99.45 E-value=3.2e-13 Score=89.66 Aligned_cols=88 Identities=24% Similarity=0.363 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHH-HHHHHHhCCCCCCCCC
Q 033769 9 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEK-TLYDYLLNPKKYIPGT 87 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~ 87 (112)
.+++.+|++||..+|+.||+.++.+ ...+|.|.+..+..... ......+..|... .+..++. ..
T Consensus 32 ~~~~~~G~~Ly~~~Ca~CHG~~G~G-~~~~P~L~g~~~~l~~~-------~~~~~~g~~~~~~~~l~~~~~-------~~ 96 (205)
T 2xts_B 32 SGDVATGDALFADNCASCHGDFAEG-LDSWPVLAGGDGSLTDP-------RPVKTIGSYWPYLSTVYDYVH-------RS 96 (205)
T ss_dssp EEEHHHHHHHHHHHTHHHHCTTSSC-STTSCCCSCCTTCTTSS-------SCCCCTTTTCCCHHHHHHHHH-------HH
T ss_pred hhhHHHHHHHHHhhhHHhCCCCCCC-CCCCCCccCCccccccc-------chhhhhccccchhHHHhccCc-------CC
Confidence 4578999999999999999998654 34568888753222110 0111223333322 2333332 23
Q ss_pred CC-CCCCCCCHHHHHHHHHHHHhhc
Q 033769 88 KM-VFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 88 ~m-~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
|+ +|...||++||++|++||+++.
T Consensus 97 MP~~~~~~LsdeEi~aL~aYl~sl~ 121 (205)
T 2xts_B 97 MPFGSAQTLSVDDTYAITAFLLYSN 121 (205)
T ss_dssp CSTTSCSCCCHHHHHHHHHHHHHHT
T ss_pred CCcccccCCCHHHHHHHHHHHHhcc
Confidence 44 4667789999999999999885
No 65
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.45 E-value=3.6e-14 Score=107.72 Aligned_cols=79 Identities=15% Similarity=0.206 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033769 10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM 89 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m 89 (112)
+++++|+++|.++|+.||+.++.+ ...+|.|.+... ++.+.+...++++..... .|+
T Consensus 578 ~~~~~G~~l~~~~Ca~CHg~~g~g-~~~~P~L~~~~~---------------------~~~~~~~~~i~~G~~~~~-~Mp 634 (668)
T 1kv9_A 578 EQVQAGKQLYGQFCSVCHGMGTIS-GGLIPDLRQSSD---------------------ATREHFQQIVLQGALKPL-GMP 634 (668)
T ss_dssp HHHHHHHHHHHHHTHHHHCGGGCC-CSSSCCGGGCCH---------------------HHHHTHHHHHHHCTTGGG-TCC
T ss_pred HHHHHHHHHHhhhhHhhCcCCCcC-CCCCCCCcCCCC---------------------CCHHHHHHHHHhCCCCCC-CCC
Confidence 346899999999999999998765 567888876321 145677888887764322 244
Q ss_pred CCCCCCCHHHHHHHHHHHHhhc
Q 033769 90 VFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 90 ~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
+|...|+++||++|++||+++.
T Consensus 635 ~~~~~ls~~ei~~l~~yl~~~~ 656 (668)
T 1kv9_A 635 SFDDSLKPEEVEQIKLYVMSRE 656 (668)
T ss_dssp CCTTTCCHHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHhcc
Confidence 6888889999999999999874
No 66
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.44 E-value=6.1e-14 Score=106.82 Aligned_cols=78 Identities=19% Similarity=0.311 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033769 10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM 89 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m 89 (112)
+++++|++||.++|+.||+.++.+ ...+|.|.+... ++.+.+..+++++... ..|+
T Consensus 593 ~~~~~G~~ly~~~Ca~CHg~~g~g-~~~~P~L~~~~~---------------------~~~~~~~~~i~~G~~~--~~Mp 648 (689)
T 1yiq_A 593 ASIEAGAKLYDGYCSQCHGIHAVS-GGVLPDLRKLTP---------------------EKHQMFLGILFGGRVP--DGMP 648 (689)
T ss_dssp HHHHHHHHHHHHHTHHHHCGGGCC-CSSSCCTTSCCH---------------------HHHHTHHHHHTTTTGG--GTCC
T ss_pred HHHHHHHHHHhhhhhhhCCCCCcC-CCCCCCcccCCc---------------------CCHHHHHHHHHcCCCC--CCCC
Confidence 356899999999999999998755 567888875321 1567788888888643 2344
Q ss_pred CCCCCCCHHHHHHHHHHHHhhc
Q 033769 90 VFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 90 ~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
+|...|+++||++|++||+++.
T Consensus 649 ~~~~~ls~~ei~~l~~Yl~~~~ 670 (689)
T 1yiq_A 649 SFADAFTPEQVDQIHQYLIKRA 670 (689)
T ss_dssp CCTTTCCHHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHhcc
Confidence 6887789999999999999874
No 67
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.42 E-value=5.8e-14 Score=104.31 Aligned_cols=78 Identities=14% Similarity=0.245 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCC-ccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCC
Q 033769 9 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNG-LFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGT 87 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 87 (112)
.++.++|++||..+|+.||+.++.+ ..+|.|.. ...+ .+.++|..+|+++.. +.
T Consensus 33 ~~~~~~G~~l~~~~Ca~CHg~~g~g--~~~p~l~~~~~~~--------------------~~~~~l~~~i~~G~~---~~ 87 (543)
T 1nir_A 33 ESEFNEAKQIYFQRCAGCHGVLRKG--ATGKPLTPDITQQ--------------------RGQQYLEALITYGTP---LG 87 (543)
T ss_dssp HHHHHHHHHHHHHHTHHHHTTTTCC--SSSSCCSHHHHHH--------------------HCHHHHHHHHHHCCS---SS
T ss_pred hhHHHHHHHHHhhhhHhhCCCCCCC--CCCCCCcchhccc--------------------CCHHHHHHHHHcCCC---CC
Confidence 3456899999999999999987643 34788752 1111 157789999988752 33
Q ss_pred CCCCC--CCCCHHHHHHHHHHHHhhc
Q 033769 88 KMVFP--GLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 88 ~m~~~--~~l~~~ei~~l~ayl~sl~ 111 (112)
|++|. ..|+++||++|++||+++.
T Consensus 88 Mp~~~~~~~ls~~ei~~l~~yl~~~~ 113 (543)
T 1nir_A 88 MPNWGSSGELSKEQITLMAKYIQHTP 113 (543)
T ss_dssp CCCSTTTTSSCHHHHHHHHHHTTSCC
T ss_pred CCCcccccCCCHHHHHHHHHHHHhcc
Confidence 44676 6789999999999999875
No 68
>3vrd_A FCCA subunit, flavocytochrome C heme subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_C*
Probab=99.41 E-value=6.7e-14 Score=90.63 Aligned_cols=85 Identities=13% Similarity=0.184 Sum_probs=53.2
Q ss_pred CCCCCHHHHHHHHHhhCcccccccCCCCC--CCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCC
Q 033769 7 APPGNPKAGEKIFKTKCAQCHTVVKGAGH--KQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYI 84 (112)
Q Consensus 7 ~~~~~~~~G~~lf~~~C~~CH~~~~~~~~--~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 84 (112)
.....+..|+.+|...|+.||+.+|.|.. ...|.|.+.... +-...|..|....+...
T Consensus 85 ~~~~~~~~g~~~~~~~Ca~CHg~~G~G~~~~~~~P~L~gq~~~--------------------yl~~~L~~~~~g~r~~~ 144 (174)
T 3vrd_A 85 FDKALVAKGTKLHDKYCEKCHVESGKPLADQDEYHILAGQWTP--------------------YLRYAIEDFRAERRPME 144 (174)
T ss_dssp CCGGGHHHHHHHHHHHTTTTSGGGGCCCTTCSSCCCCTTSCHH--------------------HHHHHHHHHHTTSSCCC
T ss_pred cchhhhccchhhhcchhHhhcCcCCCCCCCCCCCCccCCCCHH--------------------HHHHHHHHHHcCCcCCC
Confidence 34456789999999999999999875532 235666543100 01233444432222211
Q ss_pred C--CCCC-CCCCCCCHHHHHHHHHHHHhhc
Q 033769 85 P--GTKM-VFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 85 ~--~~~m-~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
+ ..+| .|...|||+||++|++||.|++
T Consensus 145 ~~~~~~M~~~a~~Lsd~eI~alaaY~~S~k 174 (174)
T 3vrd_A 145 KKMASKLKELLKAEGEDGLDALFAFYASQQ 174 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CccchhhHHHHhhCCHHHHHHHHHHHHHcC
Confidence 1 1245 5777789999999999999974
No 69
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=99.40 E-value=1.7e-13 Score=95.93 Aligned_cols=79 Identities=18% Similarity=0.261 Sum_probs=58.0
Q ss_pred CHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCCC
Q 033769 11 NPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKMV 90 (112)
Q Consensus 11 ~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m~ 90 (112)
.+++|+++|.++|+.||+.++.+. ..+|+|.+..... + .+.+.|...|.+++. +.|++
T Consensus 131 ~~~~G~~lf~~~Ca~CHg~~g~g~-~g~P~L~~~~~~~-g-----------------~~~~~l~~~i~~G~~---~~Mp~ 188 (311)
T 3mk7_C 131 AVKMGARLFANYCSICHGSDAKGS-LGFPNLADQDWRW-G-----------------GDAASIKTSILNGRI---AAMPA 188 (311)
T ss_dssp HHHHHHHHHHHHTHHHHCTTSCCB-TTBCCSSSSCCSS-C-----------------CSHHHHHHHHHHCEE---CCBCC
T ss_pred HHHHHHHHHhhhHHHhCCCCCCCC-CCCCCCCCccccc-C-----------------CCHHHHHHHHHhCCc---CCCcc
Confidence 357899999999999999986543 2368887632111 0 157789999988742 34446
Q ss_pred CCCCCCHHHHHHHHHHHHh-hc
Q 033769 91 FPGLKKPQDRADLIAYLKE-ST 111 (112)
Q Consensus 91 ~~~~l~~~ei~~l~ayl~s-l~ 111 (112)
|...++++|+++|++||++ ++
T Consensus 189 ~~~~Ls~~ei~~laaYl~s~l~ 210 (311)
T 3mk7_C 189 WGQAIGEEGVKNVAAFVRKDLA 210 (311)
T ss_dssp CHHHHCHHHHHHHHHHHHHTTT
T ss_pred ccccCCHHHHHHHHHHHHhhcc
Confidence 7666789999999999998 75
No 70
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.40 E-value=1.4e-13 Score=103.04 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033769 10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM 89 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m 89 (112)
+..+.|++||..+|+.||+.++.| ..+|+|.... + ...+.++|..+|+++.. +.|+
T Consensus 52 ~~~~~G~~ly~~~Ca~CHg~~g~G--~~gp~L~~~~---------------~----~~~~~~~l~~~i~~G~~---~~Mp 107 (567)
T 1qks_A 52 AQYNEANKIYFERCAGCHGVLRKG--ATGKALTPDL---------------T----RDLGFDYLQSFITYASP---AGMP 107 (567)
T ss_dssp HHHHHHHHHHHHHTHHHHCTTSSC--SSSCCCCHHH---------------H----HHHCHHHHHHHHTTCCC---CCCT
T ss_pred HHHHHHHHHHhhhhHhhCCCCCCC--CCCCCCCchh---------------h----ccCCHHHHHHHHHhCCC---CCCC
Confidence 346899999999999999987643 4578775310 0 00156789999988753 3333
Q ss_pred CCC--CCCCHHHHHHHHHHHHhhc
Q 033769 90 VFP--GLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 90 ~~~--~~l~~~ei~~l~ayl~sl~ 111 (112)
+|. ..|+++||++|++||+++.
T Consensus 108 ~~~~~~~Lsd~ei~~l~~yi~~~~ 131 (567)
T 1qks_A 108 NWGTSGELSAEQVDLMANYLLLDP 131 (567)
T ss_dssp TTSCCCCCCHHHHHHHHHHHHSCC
T ss_pred CccccCCCCHHHHHHHHHHHhhcc
Confidence 586 7889999999999999875
No 71
>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme; HET: HEM; 2.13A {Thiobacillus ferrooxidans} SCOP: a.3.1.4 a.3.1.4
Probab=99.37 E-value=5.8e-14 Score=90.92 Aligned_cols=82 Identities=16% Similarity=0.202 Sum_probs=45.1
Q ss_pred CCCHHHHHHHHHhhCcccccccCCCCC-CCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCC-CC
Q 033769 9 PGNPKAGEKIFKTKCAQCHTVVKGAGH-KQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYI-PG 86 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~~~~~-~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~ 86 (112)
++++.+|++|| .+|+.||+.++.+.. ..+|.|.+.. ..|..+.|..++...+... ..
T Consensus 3 ~~~~~~G~~l~-~~Ca~CHg~~g~g~~~~~~P~L~~~~--------------------~~~~~~~l~~~~~g~r~~~~~~ 61 (183)
T 1h1o_A 3 SADAPAPYRVS-SDCMVCHGMTGRDTLYPIVPRLAGQH--------------------KSYMEAQLKAYKDHSRADQNGE 61 (183)
T ss_dssp ---------CG-GGTHHHHCBTTBCCSSTTSCCCTTCC--------------------HHHHHHHHHHHHTTCCCCHHHH
T ss_pred cccHHHHHHHH-hHHHHhcCCCCCCCCCCCCCCCCCCC--------------------HHHHHHHHHHHHcCCCCCCCcc
Confidence 46788999999 899999999865443 4567776531 0122334444433222100 02
Q ss_pred CCC-CCCCCCCHHHHHHHHHHHHhhc
Q 033769 87 TKM-VFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 87 ~~m-~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
..| +|...++++|+++|++||+++.
T Consensus 62 ~~Mp~~~~~ls~~e~~al~~yl~~~~ 87 (183)
T 1h1o_A 62 IYMWPVAQALDSAKITALADYFNAQK 87 (183)
T ss_dssp HHTHHHHHTCCHHHHHHHHHHHHHCS
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHhCC
Confidence 345 4655678999999999999875
No 72
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=99.37 E-value=2.9e-13 Score=98.53 Aligned_cols=80 Identities=14% Similarity=0.202 Sum_probs=56.2
Q ss_pred CHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCC---C---
Q 033769 11 NPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKY---I--- 84 (112)
Q Consensus 11 ~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~--- 84 (112)
++++|+++|.++|+.||+.++.+....+|+|.+. . +. ..+.+.+...++++... .
T Consensus 338 ~~~~G~~ly~~~Ca~CHg~~g~g~~~~~P~L~~~--~-------~~----------~~~~~~~~~~i~~G~~~~~~~~g~ 398 (442)
T 2zoo_A 338 QIRFGQRVYEANCMACHQANGEGIPGAFPPLAKS--D-------YL----------NNNPLLGVNAIIKGLSGPIKVNNV 398 (442)
T ss_dssp HHHHHHHHHHHHTHHHHCTTSCCBTTTBCCCTTC--H-------HH----------HHCHHHHHHHHHHCEESCEEETTE
T ss_pred hhHHHHHHHHhhhHHhCCCCCCCCCCCCCCCCCc--c-------cc----------cCCHHHHHHHHHcCccccccccCC
Confidence 4689999999999999999876655567888752 0 00 01345667777766432 0
Q ss_pred -CCCCC-CCCCCCCHHHHHHHHHHHHhhc
Q 033769 85 -PGTKM-VFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 85 -~~~~m-~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
....| +|. ||++||++|++||+++.
T Consensus 399 ~~~~~MP~~~--Lsd~ei~~l~~Yl~~~~ 425 (442)
T 2zoo_A 399 NYNGVMPAMN--LNDEDIANVITFVLNNW 425 (442)
T ss_dssp EECCEECCCC--CCHHHHHHHHHHHHTST
T ss_pred ccCCCCCCCC--CCHHHHHHHHHHHHHhc
Confidence 12456 465 78999999999999874
No 73
>3vrd_A FCCA subunit, flavocytochrome C heme subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_C*
Probab=99.35 E-value=2.9e-13 Score=87.64 Aligned_cols=71 Identities=18% Similarity=0.327 Sum_probs=49.5
Q ss_pred HHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCC-CCCCCCC-CCCCC
Q 033769 17 KIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKK-YIPGTKM-VFPGL 94 (112)
Q Consensus 17 ~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~m-~~~~~ 94 (112)
++|..+|+.||+.+|.+.....|.|.+. +.++|.+.|++.+. ..+...| ++...
T Consensus 5 ~~~a~~C~~CHg~~G~~~~~~~P~LaG~------------------------~~~~i~~~l~~~~~g~~~~~~M~~~~~~ 60 (174)
T 3vrd_A 5 EMLANNCAGCHGTRGNSAGPASPSIAQM------------------------DPAVFVEVMEQFKSGEIQSTIMGRIAKG 60 (174)
T ss_dssp HHHHGGGHHHHCGGGCCCCSSSCCCTTC------------------------CHHHHHHHHHHHHHTSSCCSSHHHHHTT
T ss_pred HHHHhhHHHhCCCcCCCCCCCCCCcCCC------------------------CHHHHHHHHHHhhcCCccccccchhhcc
Confidence 4556699999999876655667888653 45566666643321 1234456 56666
Q ss_pred CCHHHHHHHHHHHHhhc
Q 033769 95 KKPQDRADLIAYLKEST 111 (112)
Q Consensus 95 l~~~ei~~l~ayl~sl~ 111 (112)
|+++||++|++||.+++
T Consensus 61 Ls~~di~~la~Y~~s~~ 77 (174)
T 3vrd_A 61 YSTADFQKMAEYFKQQT 77 (174)
T ss_dssp SCHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHhhhhccc
Confidence 88999999999999875
No 74
>1m70_A Cytochrome C4; electron transport, diheme protein; HET: HEC; 1.25A {Pseudomonas stutzeri} SCOP: a.3.1.4 a.3.1.4 PDB: 1etp_A* 1m6z_A*
Probab=99.34 E-value=8.4e-13 Score=85.86 Aligned_cols=80 Identities=24% Similarity=0.245 Sum_probs=54.6
Q ss_pred CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCC-------
Q 033769 10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKK------- 82 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------- 82 (112)
+++++|++| ..+|+.||+.++.+....+|+|.+... .|..++|..++. +..
T Consensus 2 ~~~~~G~~l-~~~C~~CHg~~g~g~~~~~P~L~~~~~--------------------~~~~~~l~~~~~-G~~~~~~~~~ 59 (190)
T 1m70_A 2 GDAEAGQGK-VAVCGACHGVDGNSPAPNFPKLAGQGE--------------------RYLLKQLQDIKA-GSTPGAPEGV 59 (190)
T ss_dssp CCHHHHHTT-CGGGHHHHCTTSCCCCTTSCCCTTCCH--------------------HHHHHHHHHHHH-HHSTTCCTTS
T ss_pred cchhHHHHH-HhHHHhhcCCCCCCCCCCCCCCCCCCH--------------------HHHHHHHHHHHc-CCcccccccc
Confidence 688999999 568999999987655456788875311 123445555542 211
Q ss_pred CCCCCCC-CCCCCCCHHHHHHHHHHHHhhc
Q 033769 83 YIPGTKM-VFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 83 ~~~~~~m-~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
..+...| +|...++++|+++|++||+++.
T Consensus 60 ~~~~~~Mp~~~~~ls~~e~~~l~~yl~~~~ 89 (190)
T 1m70_A 60 GRKVLEMTGMLDPLSDQDLEDIAAYFSSQK 89 (190)
T ss_dssp SCCCGGGTTTTTTCCHHHHHHHHHHHHHSC
T ss_pred CCCCcchHHHHHHCCHHHHHHHHHHHHhCC
Confidence 0223456 4767789999999999999875
No 75
>2blf_B SORB, sulfite\:cytochrome C oxidoreductase subunit B; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_B* 2c9x_B* 2ca3_B* 2ca4_B*
Probab=98.85 E-value=2e-09 Score=61.42 Aligned_cols=18 Identities=33% Similarity=0.715 Sum_probs=16.2
Q ss_pred HHHHHHHHhhCccccccc
Q 033769 13 KAGEKIFKTKCAQCHTVV 30 (112)
Q Consensus 13 ~~G~~lf~~~C~~CH~~~ 30 (112)
..|+++|..+|+.||+.+
T Consensus 19 ~~G~~l~~~~C~~CH~~~ 36 (81)
T 2blf_B 19 QPGFEAAQNNCAACHSVD 36 (81)
T ss_dssp STHHHHHHHHTTSSSCTH
T ss_pred cchHHHHHHHHHHhcCCc
Confidence 589999999999999864
No 76
>1zzh_A Cytochrome C peroxidase; heme groups, oxidoreductase; HET: HEC; 2.70A {Rhodobacter capsulatus}
Probab=98.83 E-value=1.1e-08 Score=72.14 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=26.4
Q ss_pred ceeeCHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769 65 AVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 65 ~~~~~~~~l~~~l~~~~~~~~~~~m~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
|..++.+++..+..... +...||++|+++||+||++|+
T Consensus 266 G~~~tL~evv~~y~~~~---------~~~~Ls~~E~~~LvaFL~tLt 303 (328)
T 1zzh_A 266 GKVWDLREAVSVMANSQ---------LGATLDDTQVDQITAFLGTLT 303 (328)
T ss_dssp TCBCCHHHHHHHHHSST---------TSCCCCHHHHHHHHHHHGGGC
T ss_pred CccCCHHHHHHHhhccc---------cCCCCCHHHHHHHHHHHHHcC
Confidence 34456666666654321 223578999999999999986
No 77
>3oa8_A SOXA; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_A*
Probab=98.81 E-value=4.5e-10 Score=77.48 Aligned_cols=82 Identities=16% Similarity=0.186 Sum_probs=47.4
Q ss_pred CHHHHHHHHHh-------hCcccccccCCCCC-C---CCCCCCCccCCCCCCCCCCccchhccccceeeC-HHHHHHHHh
Q 033769 11 NPKAGEKIFKT-------KCAQCHTVVKGAGH-K---QGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWE-EKTLYDYLL 78 (112)
Q Consensus 11 ~~~~G~~lf~~-------~C~~CH~~~~~~~~-~---~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~ 78 (112)
.++.|++||.+ +|+.||+.+|.+.. . ..|.|..- .|...+ .+.|...+.
T Consensus 52 ~v~~G~~lf~~~~g~n~~~Ca~CHg~~G~g~~~G~~a~yP~l~~~-------------------~g~v~~L~~~I~~c~~ 112 (275)
T 3oa8_A 52 NVDRGEVLWSEPRGTRNVSLETCDLGEGPGKLEGAYAHLPRYFAD-------------------TGKVMDLEQRLLWCME 112 (275)
T ss_dssp HHHHHHHHHTCCBTTTTBCSTTCBSSSSBTCCTTTGGGCSEEETT-------------------TTEEECHHHHHHHHHH
T ss_pred HHHHHHHHHcCcCCCCCCcccccCCccCCCcccChhhhCcCcccc-------------------CCCHHHHHHHHHHHHH
Confidence 36899999986 69999987643211 1 12333211 111112 234555544
Q ss_pred CCCCCCC-CCCC-CCCCCCCHHHHHHHHHHHHhhc
Q 033769 79 NPKKYIP-GTKM-VFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 79 ~~~~~~~-~~~m-~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
......+ ...| ++...|+++||.+|++|+.+|+
T Consensus 113 ~~~g~~~~~~~M~p~~~~Ls~~di~~laaY~asls 147 (275)
T 3oa8_A 113 TIQGRDTKPLVAKPFSGPGRTSDMEDLVAFIANKS 147 (275)
T ss_dssp HTTCCCCHHHHHSCSCBTTBCCHHHHHHHHHHHTT
T ss_pred ccccccccccccccccccCCHHHHHHHHHHHHHcC
Confidence 3221111 1123 6766678999999999999986
No 78
>3o5c_A Cytochrome C551 peroxidase; diheme cytochrome, hydrogen peroxide, oxidoreductase; HET: HEM; 1.80A {Shewanella oneidensis}
Probab=98.75 E-value=7e-09 Score=72.86 Aligned_cols=38 Identities=11% Similarity=0.288 Sum_probs=26.1
Q ss_pred ceeeCHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769 65 AVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 65 ~~~~~~~~l~~~l~~~~~~~~~~~m~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
|..++.++...+...+ .+...||++|+++|++||++|+
T Consensus 254 G~~~tL~evv~~~~~~---------~~~~~Ls~~E~~~LvaFL~sLt 291 (320)
T 3o5c_A 254 GSVWTLEEAVNTMADI---------QLGQKLTEKETKEMVAFLNSLT 291 (320)
T ss_dssp TCBCSHHHHHHHHHHH---------HHSCCCCHHHHHHHHHHHHTTC
T ss_pred CCcCcHHHHHHHhccc---------ccccCCCHHHHHHHHHHHHHcC
Confidence 4445666666664321 1223578999999999999997
No 79
>2c1v_A DI-HAEM cytochrome C peroxidase; electron transport, heme, oxidoreductase, periplasmic; HET: HEC; 1.2A {Paracoccus pantotrophus} PDB: 2c1u_A*
Probab=98.73 E-value=2e-08 Score=71.03 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=25.3
Q ss_pred ceeeCHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769 65 AVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 65 ~~~~~~~~l~~~l~~~~~~~~~~~m~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
|..++.+++..+.... .+ ...||++|+++||+||++|+
T Consensus 277 G~~~tL~evv~~y~~~-------~~--~~~Ls~~E~~~LvaFL~sLt 314 (338)
T 2c1v_A 277 GVVWELAEAVKIMSSA-------QI--GTELTDQQAEDITAFLGTLT 314 (338)
T ss_dssp TCBCCHHHHHHHHHHH-------HT--CCCCCHHHHHHHHHHHHTTC
T ss_pred CccCCHHHHHHHHHhh-------cc--cCCCCHHHHHHHHHHHHHcC
Confidence 3445666666664321 11 23468999999999999996
No 80
>3a9f_A Cytochrome C; alpha helix, mono heme, electron transport; HET: HEC P33 PGE PG4; 1.30A {Chlorobaculum tepidum}
Probab=98.70 E-value=2.4e-09 Score=62.50 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHhhCccccccc
Q 033769 10 GNPKAGEKIFKTKCAQCHTVV 30 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~ 30 (112)
.++..|++||+.+|..||+.+
T Consensus 25 ~~~~~g~~l~~~kC~~CHs~d 45 (92)
T 3a9f_A 25 FDFDAAKKLVDVRCNKCHTLD 45 (92)
T ss_dssp CCHHHHHHHHHHHSSSSSCSG
T ss_pred cChHhHHHHHHhHHHHhcCCc
Confidence 367899999999999999986
No 81
>1nml_A DI-HAEM cytochrome C peroxidase; oxidoreductase, electron transport; HET: HEM CIT; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.5 a.3.1.5 PDB: 1rz5_A* 1rz6_A*
Probab=98.70 E-value=5.8e-08 Score=68.42 Aligned_cols=38 Identities=13% Similarity=0.274 Sum_probs=25.8
Q ss_pred ceeeCHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769 65 AVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 65 ~~~~~~~~l~~~l~~~~~~~~~~~m~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
|..++.+++..++... .+ ...||++|+++||+||++|+
T Consensus 263 G~~~tL~evv~~~~~~-------~~--~~~Ls~~e~~~LvAFL~sLt 300 (326)
T 1nml_A 263 GAVWSLEEAVAVMGTA-------QL--GTELNNDEVKSIVAFLKTLT 300 (326)
T ss_dssp CCBCCHHHHHHHTCCT-------TT--TCCCCHHHHHHHHHHHGGGC
T ss_pred CCcCCHHHHHHHhhhh-------cc--CCCCCHHHHHHHHHHHHHcC
Confidence 4456666666663221 11 23478999999999999997
No 82
>4aan_A Cytochrome C551 peroxidase; oxidoreductase, multiheme cytochromes, conformational rearra; HET: HEC; 1.22A {Geobacter sulfurreducens} PDB: 4aam_A* 4aal_A* 4aao_A*
Probab=98.70 E-value=1.2e-08 Score=72.22 Aligned_cols=38 Identities=13% Similarity=0.198 Sum_probs=26.6
Q ss_pred ceeeCHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769 65 AVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 65 ~~~~~~~~l~~~l~~~~~~~~~~~m~~~~~l~~~ei~~l~ayl~sl~ 111 (112)
|..++.+++.++...+.. . --||++|+++||+||++|+
T Consensus 280 G~~~tLeevv~~y~~~~~-------~--~~Lt~~E~~~LvAFL~tLt 317 (341)
T 4aan_A 280 GKVWKLKDAVKIMGSAQL-------G--ISITDADADKIVTFLNTLT 317 (341)
T ss_dssp CCBCCHHHHHHHHHHHHH-------S--CCCCHHHHHHHHHHHHTTC
T ss_pred CCcCCHHHHHHHHhccCc-------C--CCCCHHHHHHHHHHHHccC
Confidence 555677777766543211 1 2368999999999999997
No 83
>1h32_A SOXA, diheme cytochrome C; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.8 a.3.1.8 PDB: 1h31_A* 1h33_A* 2oz1_A*
Probab=98.69 E-value=1.5e-08 Score=69.35 Aligned_cols=85 Identities=18% Similarity=0.199 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHh-------hCcccccccCCCCCCCCCCCC-CccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCC
Q 033769 10 GNPKAGEKIFKT-------KCAQCHTVVKGAGHKQGPNLN-GLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPK 81 (112)
Q Consensus 10 ~~~~~G~~lf~~-------~C~~CH~~~~~~~~~~gP~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 81 (112)
.++++|++||.. .|++||+.+ .|....+|.|. +++.. .+.|.+. .+..|+...-... ..
T Consensus 157 ~~~~~G~~lF~~~~g~~~~~Ca~CHg~~-~G~~~g~~~l~~~~~~~----~p~Yr~~-----~g~~~tl~~ri~~---~~ 223 (261)
T 1h32_A 157 STWEKGREIYYTRYGQLDLSCASCHEQY-FDHYIRADHLSQGQING----FPSYRLK-----NARLNAVHDRFRG---CI 223 (261)
T ss_dssp HHHHHHHHHHTCCBTTTTBCHHHHHTTS-TTSEETTEECCCCCCTT----CSEEETT-----TTEEECHHHHHHH---HH
T ss_pred HHHHHHHHHHHHhcCCCCCcccccCCCC-CCCCCCCCcCCCCcccC----Ccceecc-----CcchhhHHHHHHH---HH
Confidence 356899999987 599999975 22222234443 33221 1222211 1223333332222 11
Q ss_pred CCCCCCCC-CCCCCCCHHHHHHHHHHHHhhcC
Q 033769 82 KYIPGTKM-VFPGLKKPQDRADLIAYLKESTA 112 (112)
Q Consensus 82 ~~~~~~~m-~~~~~l~~~ei~~l~ayl~sl~~ 112 (112)
.+| .....++++||.+|++||.+|++
T Consensus 224 -----~~m~~~~~~Ls~~ei~aLaaYl~sL~~ 250 (261)
T 1h32_A 224 -----RDTRGVPFAVGSPEFVALELYVASRGN 250 (261)
T ss_dssp -----HTTTBCCCCTTCHHHHHHHHHHHHHTT
T ss_pred -----hccCCCCCCCChHHHHHHHHHHHHhcC
Confidence 123 23345789999999999999874
No 84
>1iqc_A DI-heme peroxidase; proteobacteria, B subdivision, ammonia-oxidizing bacteria, oxidoreductase; HET: HEM; 1.80A {Nitrosomonas europaea} SCOP: a.3.1.5 a.3.1.5
Probab=98.67 E-value=1.5e-08 Score=70.86 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=18.2
Q ss_pred CCCHHHHHHHHHh-hCccccccc
Q 033769 9 PGNPKAGEKIFKT-KCAQCHTVV 30 (112)
Q Consensus 9 ~~~~~~G~~lf~~-~C~~CH~~~ 30 (112)
...+.+|++||.. .|+.||+..
T Consensus 168 t~~~~~G~~LF~~~gCa~CH~~~ 190 (308)
T 1iqc_A 168 NQDELEGYNLFKGSGCVQCHNGP 190 (308)
T ss_dssp CHHHHHHHHHHHHHTGGGTSCTT
T ss_pred CHHHHHHHHHHcCCChhhcCCCc
Confidence 4557899999997 699999854
No 85
>2vhd_A Cytochrome C551 peroxidase; iron, heme, transport, metal-binding, oxidoreduc electron transport; HET: HEC; 2.3A {Pseudomonas aeruginosa} SCOP: a.3.1.5 a.3.1.5 PDB: 1eb7_A*
Probab=98.67 E-value=3.3e-08 Score=69.58 Aligned_cols=19 Identities=21% Similarity=0.454 Sum_probs=16.9
Q ss_pred CCCCHHHHHHHHHHHHhhc
Q 033769 93 GLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 93 ~~l~~~ei~~l~ayl~sl~ 111 (112)
..||++|+++||+||++|+
T Consensus 282 ~~Ls~~E~~~LvaFL~tLt 300 (323)
T 2vhd_A 282 KQLAPDDVENIVAFLHSLS 300 (323)
T ss_dssp CCCCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHcC
Confidence 3578999999999999986
No 86
>2c1d_A SOXA; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus denitrificans}
Probab=98.63 E-value=3.6e-08 Score=67.54 Aligned_cols=85 Identities=16% Similarity=0.181 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHhh-------CcccccccCCCCCCCCCCCC-CccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCC
Q 033769 10 GNPKAGEKIFKTK-------CAQCHTVVKGAGHKQGPNLN-GLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPK 81 (112)
Q Consensus 10 ~~~~~G~~lf~~~-------C~~CH~~~~~~~~~~gP~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 81 (112)
.+.++|++||..+ |++||+.+ .|....+|.|. +++. ..+.|.+. .+..++....... .
T Consensus 160 ~~~~~G~~lF~~~~G~~~~aCa~CHg~~-~G~~~~~~~l~~g~~~----~~p~Y~~~-----~~~~~t~~~r~~~---~- 225 (264)
T 2c1d_A 160 PYWEHGKEIYYTRYGQLEMSCANCHEDN-AGNMIRADHLSQGQIN----GFPTYRLK-----DSGMVTAQHRFVG---C- 225 (264)
T ss_dssp HHHHHHHHHHHCCBTTTTBCHHHHHTTS-TTSEETTEECCCCCCT----TCSEEETT-----TTEEECHHHHHHH---H-
T ss_pred HHHHHHHHHHHhhcCCCCCcccccCCCC-CCCCcCCCcCCCcccc----CCcchhhc-----ccccccHHHHHHH---H-
Confidence 3578999999976 99999976 22112233332 2221 11222211 1112222222221 1
Q ss_pred CCCCCCCC-CCCCCCCHHHHHHHHHHHHhhcC
Q 033769 82 KYIPGTKM-VFPGLKKPQDRADLIAYLKESTA 112 (112)
Q Consensus 82 ~~~~~~~m-~~~~~l~~~ei~~l~ayl~sl~~ 112 (112)
...| .....|+++||.+|++||.+|++
T Consensus 226 ----~~~M~~~~~~Ls~~ei~aLaaYv~sL~~ 253 (264)
T 2c1d_A 226 ----VRDTRAETFKAGSDDFKALELYVASRGN 253 (264)
T ss_dssp ----HHTTTBCCCCTTCHHHHHHHHHHHHHTT
T ss_pred ----HhhccCCCCCCCHHHHHHHHHHHHHccC
Confidence 0124 34556789999999999999863
No 87
>1e8e_A Cytochrome C''; oxidoreductase(cytochrome), ligand detachment, redox-BOHR effect, paramagnetic; HET: HEC; NMR {Methylophilus methylotrophus} SCOP: a.3.1.1 PDB: 1gu2_A* 1oae_A*
Probab=98.60 E-value=2.3e-08 Score=60.83 Aligned_cols=20 Identities=35% Similarity=0.532 Sum_probs=17.0
Q ss_pred CCCCHHHHHHHHHHHHhhcC
Q 033769 93 GLKKPQDRADLIAYLKESTA 112 (112)
Q Consensus 93 ~~l~~~ei~~l~ayl~sl~~ 112 (112)
.-.|.+|..||++||.++.+
T Consensus 102 r~cTa~EK~D~~ayL~s~~~ 121 (124)
T 1e8e_A 102 ADCSPSEKANFIAYLLTETK 121 (124)
T ss_dssp SCCCHHHHHHHHHHHTTCCC
T ss_pred cCCCHHHHHHHHHHHHHcCC
Confidence 44689999999999999864
No 88
>1dw0_A Cytochrome C; asparagine ligation, oxygen binding, disulfide bridge, oxygen storage/transport complex; HET: HEM; 1.82A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1dw1_A* 1dw2_A* 1dw3_A*
Probab=98.59 E-value=4.5e-08 Score=58.73 Aligned_cols=82 Identities=20% Similarity=0.390 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHh----------hCcccccccCCCCC--CCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHH
Q 033769 9 PGNPKAGEKIFKT----------KCAQCHTVVKGAGH--KQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDY 76 (112)
Q Consensus 9 ~~~~~~G~~lf~~----------~C~~CH~~~~~~~~--~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 76 (112)
..++++|+++|.+ .|++||+.+....+ ..|..+.-+. .....-.|+ +.+.+.+|
T Consensus 19 ~~~a~RG~alf~~~~~~~~g~~pSCaSCHg~~p~~~g~~~tgk~I~p~A----p~~np~Rft----------D~akvekw 84 (112)
T 1dw0_A 19 PADAERGRALFLSTQTGGKPDTPSCTTCHGADVTRAGQTRTGKEIAPLA----PSATPDRFT----------DSARVEKW 84 (112)
T ss_dssp CCCHHHHHHHHHCCCSSSCTTCCSTHHHHCSSTTSCEECTTSCEECCSS----TTTSTTTTC----------CHHHHHHH
T ss_pred cccHHHHHHHHhhhcccCCCCCCcccccCCCCcccCcccccCCcccCcC----CccCccccC----------CHHHHHHH
Confidence 5789999999932 49999998753211 1121111111 011111222 56677777
Q ss_pred HhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhh
Q 033769 77 LLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110 (112)
Q Consensus 77 l~~~~~~~~~~~m~~~~~l~~~ei~~l~ayl~sl 110 (112)
++..-.. -+..--|.+|..|+++||.++
T Consensus 85 f~rnc~~------v~gr~cta~EK~d~l~~l~~~ 112 (112)
T 1dw0_A 85 LGRNCNS------VIGRDCTPGEKADLLAWLAAQ 112 (112)
T ss_dssp HHHHHHH------HHSSCCCHHHHHHHHHHHHTC
T ss_pred HHhhhhH------HHcccCCHHHHHHHHHHHHhC
Confidence 7533211 123445899999999999874
No 89
>1jmx_A Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jmz_A*
Probab=98.54 E-value=1.8e-08 Score=73.44 Aligned_cols=66 Identities=15% Similarity=0.258 Sum_probs=39.5
Q ss_pred HHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC-CC
Q 033769 13 KAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM-VF 91 (112)
Q Consensus 13 ~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m-~~ 91 (112)
..|+.||..+|+.||+.++.|. +..+.... .+.+.....+. .|+ .|
T Consensus 2 a~Gk~LF~~NCAaCHGagaqG~------~~~Is~qr-------------------~S~e~Wq~tV~--------RMp~a~ 48 (494)
T 1jmx_A 2 EQGPSLLQNKCMGCHIPEGNDT------YSRISHQR-------------------KTPEGWLMSIA--------RMQVMH 48 (494)
T ss_dssp CCHHHHHHHHHBTTBCEEETTE------ETTGGGCE-------------------ECHHHHHHHHH--------HHHHHH
T ss_pred chhhHHHhhhhhhhcCCCccCc------cccccccC-------------------CCHHHHHHHHH--------hhhhhh
Confidence 3699999999999999875432 11111100 02222222211 122 35
Q ss_pred CCCCCHHHHHHHHHHHHhhc
Q 033769 92 PGLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 92 ~~~l~~~ei~~l~ayl~sl~ 111 (112)
...++++|+.+|++||.++.
T Consensus 49 Ga~LSdEEI~aVAaYLasls 68 (494)
T 1jmx_A 49 GLQISDDDRRTLVKYLADKQ 68 (494)
T ss_dssp CCCCCHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHhC
Confidence 55678999999999998763
No 90
>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*
Probab=98.53 E-value=4.9e-07 Score=61.16 Aligned_cols=22 Identities=23% Similarity=0.696 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHHhhCccccccc
Q 033769 9 PGNPKAGEKIFKTKCAQCHTVV 30 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~ 30 (112)
.+++.+|.++|..+|++||+..
T Consensus 26 ~aslqRG~qvy~~~CaaCHsl~ 47 (248)
T 3cx5_D 26 HASIRRGYQVYREVCAACHSLD 47 (248)
T ss_dssp HHHHHHHHHHHHHTGGGTCCCT
T ss_pred hHhHhhhHHHHHHhhhhccCcc
Confidence 3457999999999999999986
No 91
>3hq9_A Cytochrome C551 peroxidase; oxidoreductase; HET: HEM; 1.52A {Geobacter sulfurreducens} PDB: 3hq6_A* 3hq8_A* 3hq7_A*
Probab=98.52 E-value=7.3e-08 Score=68.29 Aligned_cols=19 Identities=16% Similarity=0.122 Sum_probs=17.2
Q ss_pred CCCCHHHHHHHHHHHHhhc
Q 033769 93 GLKKPQDRADLIAYLKEST 111 (112)
Q Consensus 93 ~~l~~~ei~~l~ayl~sl~ 111 (112)
..||++|+++|++||++|+
T Consensus 304 ~~Ls~~E~~~LvaFL~sLt 322 (345)
T 3hq9_A 304 IKLSDDESEAIAAFLGSLT 322 (345)
T ss_dssp CCCCHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHHHHHHhC
Confidence 4578999999999999997
No 92
>3sjl_A Methylamine utilization protein MAUG; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 3sle_A* 3svw_A* 3sxt_A* 3l4o_A* 3pxs_A* 3pxt_A* 3pxw_A* 3l4m_A* 3sws_A* 3orv_A* 3rmz_A* 3rlm_A* 3rn0_A* 3rn1_A*
Probab=98.47 E-value=7.1e-07 Score=63.86 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=18.6
Q ss_pred CCCCCHHHHHHHHHh-hCcccccc
Q 033769 7 APPGNPKAGEKIFKT-KCAQCHTV 29 (112)
Q Consensus 7 ~~~~~~~~G~~lf~~-~C~~CH~~ 29 (112)
.....+.+|..||.. .|+.||..
T Consensus 184 aLt~~e~rG~~LF~~~~C~~CH~g 207 (373)
T 3sjl_A 184 KFTPLEEFGYTVFITWNCRLCHMQ 207 (373)
T ss_dssp CCCHHHHHHHHHHHHSGGGGTSSS
T ss_pred cCCHHHHHHHHHHCcCCCccccCC
Confidence 345667899999986 69999974
No 93
>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans}
Probab=98.39 E-value=7.9e-07 Score=60.57 Aligned_cols=23 Identities=17% Similarity=0.522 Sum_probs=19.6
Q ss_pred CCCHHHHHHHHHhhCcccccccC
Q 033769 9 PGNPKAGEKIFKTKCAQCHTVVK 31 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~ 31 (112)
.+++.+|.++|..+|++||+...
T Consensus 44 ~aslqRG~qVy~evCaaCHsl~~ 66 (263)
T 2yiu_B 44 QHQLQRGLQVYTEVCSACHGLRY 66 (263)
T ss_dssp HHHHHHHHHHHHHTGGGTCCCTT
T ss_pred hHHHHHHHHHHHHHhhccCCccc
Confidence 34578999999999999999753
No 94
>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ...
Probab=98.39 E-value=1.9e-06 Score=58.12 Aligned_cols=23 Identities=22% Similarity=0.587 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHhhCcccccccC
Q 033769 9 PGNPKAGEKIFKTKCAQCHTVVK 31 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~ 31 (112)
.+++.+|.++|..+|++||+...
T Consensus 23 ~~slqRG~qvy~~~CaaCHSl~y 45 (241)
T 1pp9_D 23 HTSIRRGFQVYKQVCSSCHSMDY 45 (241)
T ss_dssp HHHHHHHHHHHHHTGGGTCCCTT
T ss_pred hHHHhhhHHHHHHhhhhccCccc
Confidence 34579999999999999999863
No 95
>3oa8_A SOXA; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_A*
Probab=98.37 E-value=2.7e-07 Score=63.61 Aligned_cols=88 Identities=19% Similarity=0.266 Sum_probs=47.5
Q ss_pred CHHHHHHHHH-------hhCcccccccCCCCC-CCCCCCCCc-cCC--CCCCCCCCccchhccccceeeCHHH-HHHHHh
Q 033769 11 NPKAGEKIFK-------TKCAQCHTVVKGAGH-KQGPNLNGL-FGR--QSGTTPGYSYSAANKGMAVIWEEKT-LYDYLL 78 (112)
Q Consensus 11 ~~~~G~~lf~-------~~C~~CH~~~~~~~~-~~gP~l~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~ 78 (112)
..++|++||. ..|++||+.+|.+.. ...|.|.+. .++ ..+..+.|.... ...|+... +..-.
T Consensus 164 ~~~~G~~lf~~r~G~~~~~Ca~CHg~~G~g~~~~~~P~L~g~~qg~~~~~gq~p~Y~~~q-----~~~~~~~~R~~~c~- 237 (275)
T 3oa8_A 164 MYAIGEALFFRRSSINDFSCSTCHGAAGKRIRLQALPQLDVPGKDAQLTMATWPTYRVSQ-----SALRTMQHRMWDCY- 237 (275)
T ss_dssp HHHHHHHHHHCCBTTTTBCHHHHHSSSSCEETTEECCCCSSSSHHHHHHHTTCSEEEGGG-----TEEECHHHHHHHHH-
T ss_pred HHHHHHHHHHhccCCCCCchHhhCCCcCCCCCccCCCcccccccccccccccCHHHHHHH-----hhhhhhhhcccchh-
Confidence 3578999993 469999998764422 236888742 000 001122222111 11222221 21111
Q ss_pred CCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHhhcC
Q 033769 79 NPKKYIPGTKM-VFPGLKKPQDRADLIAYLKESTA 112 (112)
Q Consensus 79 ~~~~~~~~~~m-~~~~~l~~~ei~~l~ayl~sl~~ 112 (112)
..| .....++++||.+|++||.+|++
T Consensus 238 --------~~M~~~a~~l~~~ei~ALa~Yl~~ls~ 264 (275)
T 3oa8_A 238 --------RQMRMPAPDYASEAVTALTLYLTKQAE 264 (275)
T ss_dssp --------HHTTCCCCCTTCHHHHHHHHHHHHHTT
T ss_pred --------hhhccCCCCCChHHHHHHHHHHHHhCC
Confidence 123 33455789999999999998864
No 96
>2c1d_A SOXA; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus denitrificans}
Probab=98.20 E-value=4.6e-07 Score=62.06 Aligned_cols=18 Identities=6% Similarity=0.161 Sum_probs=15.6
Q ss_pred CCCHHHHHHHHHHHHhhc
Q 033769 94 LKKPQDRADLIAYLKEST 111 (112)
Q Consensus 94 ~l~~~ei~~l~ayl~sl~ 111 (112)
.++++|+.+|++|+++++
T Consensus 128 ~l~~~~~~alaaY~~sls 145 (264)
T 2c1d_A 128 GVTSDNMKDMLSLISLQS 145 (264)
T ss_dssp CTTSHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHHh
Confidence 356899999999999986
No 97
>1pby_A Quinohemoprotein amine dehydrogenase 60 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jju_A*
Probab=98.05 E-value=2.1e-06 Score=62.58 Aligned_cols=18 Identities=33% Similarity=0.881 Sum_probs=16.1
Q ss_pred HHHHHHHhhCcccccccC
Q 033769 14 AGEKIFKTKCAQCHTVVK 31 (112)
Q Consensus 14 ~G~~lf~~~C~~CH~~~~ 31 (112)
.|++||..+|++||+.+.
T Consensus 2 ~GkeLv~anCasCHsad~ 19 (489)
T 1pby_A 2 TGEEVLQNACAACHVQHE 19 (489)
T ss_dssp CHHHHHHHTGGGTSCBCT
T ss_pred ChHHHHHhhhHhhcCCCc
Confidence 589999999999999864
No 98
>1h32_A SOXA, diheme cytochrome C; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.8 a.3.1.8 PDB: 1h31_A* 1h33_A* 2oz1_A*
Probab=98.00 E-value=1.2e-06 Score=59.81 Aligned_cols=18 Identities=11% Similarity=0.089 Sum_probs=15.7
Q ss_pred CCCHHHHHHHHHHHHhhc
Q 033769 94 LKKPQDRADLIAYLKEST 111 (112)
Q Consensus 94 ~l~~~ei~~l~ayl~sl~ 111 (112)
.++++|+.+|++|+++++
T Consensus 125 ~l~~~~i~alaaY~~sls 142 (261)
T 1h32_A 125 DYIGPDMTAMVALIASVS 142 (261)
T ss_dssp CTTSHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHh
Confidence 356999999999999986
No 99
>1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A {Rhodobacter capsulatus}
Probab=97.43 E-value=3.9e-05 Score=52.17 Aligned_cols=23 Identities=17% Similarity=0.583 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHHHhhCccccccc
Q 033769 8 PPGNPKAGEKIFKTKCAQCHTVV 30 (112)
Q Consensus 8 ~~~~~~~G~~lf~~~C~~CH~~~ 30 (112)
..+++.+|.++|..+|++||+..
T Consensus 19 D~asLqRG~qvy~evCa~CHsl~ 41 (258)
T 1zrt_D 19 DQAQLRRGFQVYNEVCSACHGMK 41 (258)
T ss_dssp CHHHHHHHHHHHHHTTTTTCCCT
T ss_pred CHHHHHHHHHHHHHHHhhcCCch
Confidence 34567999999999999999975
No 100
>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B*
Probab=97.35 E-value=4.9e-05 Score=51.93 Aligned_cols=23 Identities=22% Similarity=0.563 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHHHhhCccccccc
Q 033769 8 PPGNPKAGEKIFKTKCAQCHTVV 30 (112)
Q Consensus 8 ~~~~~~~G~~lf~~~C~~CH~~~ 30 (112)
..+++.+|.++|..+|++||+..
T Consensus 21 D~asLqRG~qVy~evCaaCHsl~ 43 (269)
T 2qjy_B 21 DQHQLQRGLQVYTEVCAACHGMK 43 (269)
T ss_dssp CHHHHHHHHHHHHHTGGGTCCCT
T ss_pred CHHHHHHHHHHHHHHHhhcCCch
Confidence 34567999999999999999975
No 101
>1zzh_A Cytochrome C peroxidase; heme groups, oxidoreductase; HET: HEC; 2.70A {Rhodobacter capsulatus}
Probab=97.16 E-value=0.0019 Score=45.39 Aligned_cols=24 Identities=25% Similarity=0.492 Sum_probs=18.4
Q ss_pred CCCCHHHHHHHHHhh---------CcccccccC
Q 033769 8 PPGNPKAGEKIFKTK---------CAQCHTVVK 31 (112)
Q Consensus 8 ~~~~~~~G~~lf~~~---------C~~CH~~~~ 31 (112)
....++.|++||-.. |++||..+.
T Consensus 30 ~~~~v~lGk~LF~D~~LS~~~~~SCasCH~~~~ 62 (328)
T 1zzh_A 30 TRDKIDLGAMLFFDPRMSKSGVFSCQSCHNVGL 62 (328)
T ss_dssp TTHHHHHHHHHHHCGGGSTTSSCCHHHHSBTTT
T ss_pred CHHHHHHHHHHhCCcccccCCCcchhhcCCccc
Confidence 345578999999643 999999753
No 102
>1iqc_A DI-heme peroxidase; proteobacteria, B subdivision, ammonia-oxidizing bacteria, oxidoreductase; HET: HEM; 1.80A {Nitrosomonas europaea} SCOP: a.3.1.5 a.3.1.5
Probab=97.07 E-value=0.0015 Score=45.53 Aligned_cols=18 Identities=0% Similarity=0.003 Sum_probs=14.7
Q ss_pred CCCHHHHHHHHHHHHhhc
Q 033769 94 LKKPQDRADLIAYLKEST 111 (112)
Q Consensus 94 ~l~~~ei~~l~ayl~sl~ 111 (112)
+..++++.+|++|+++|.
T Consensus 133 ~~~~~~~~Aia~y~~tl~ 150 (308)
T 1iqc_A 133 VTIDRITTAIAQFEETLV 150 (308)
T ss_dssp CCHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHhhhC
Confidence 334889999999999874
No 103
>2c1v_A DI-HAEM cytochrome C peroxidase; electron transport, heme, oxidoreductase, periplasmic; HET: HEC; 1.2A {Paracoccus pantotrophus} PDB: 2c1u_A*
Probab=96.96 E-value=0.0018 Score=45.77 Aligned_cols=21 Identities=29% Similarity=0.627 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHh---------hCccccccc
Q 033769 10 GNPKAGEKIFKT---------KCAQCHTVV 30 (112)
Q Consensus 10 ~~~~~G~~lf~~---------~C~~CH~~~ 30 (112)
..++.|++||.. .|++||...
T Consensus 43 ~~v~lGk~LF~D~~LS~~~~~SCasCH~~~ 72 (338)
T 2c1v_A 43 EKIELGKVLFFDPRMSSSGLISCQTCHNVG 72 (338)
T ss_dssp HHHHHHHHHHTCGGGSTTSSCCHHHHSBTT
T ss_pred HHHHHHHHHhcCcccccCCCcchhhcCCcc
Confidence 456899999975 599999864
No 104
>1jmx_A Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jmz_A*
Probab=96.76 E-value=0.00014 Score=53.36 Aligned_cols=23 Identities=13% Similarity=0.401 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHHhhCcccccccC
Q 033769 9 PGNPKAGEKIFKTKCAQCHTVVK 31 (112)
Q Consensus 9 ~~~~~~G~~lf~~~C~~CH~~~~ 31 (112)
..++++|++||..+|++||+.++
T Consensus 86 ~~~va~G~eLF~~NCAaCHG~dG 108 (494)
T 1jmx_A 86 LNTVEQFDTQLSETCGRCHSGAR 108 (494)
T ss_dssp TTCCCCCCHHHHHHHSSSSCSHH
T ss_pred cchhhhHHHHHhhhhhhcCCccc
Confidence 44567899999999999999875
No 105
>2vhd_A Cytochrome C551 peroxidase; iron, heme, transport, metal-binding, oxidoreduc electron transport; HET: HEC; 2.3A {Pseudomonas aeruginosa} SCOP: a.3.1.5 a.3.1.5 PDB: 1eb7_A*
Probab=96.71 E-value=0.0052 Score=43.10 Aligned_cols=21 Identities=33% Similarity=0.714 Sum_probs=17.1
Q ss_pred CCHHHHHHHHHhh---------Cccccccc
Q 033769 10 GNPKAGEKIFKTK---------CAQCHTVV 30 (112)
Q Consensus 10 ~~~~~G~~lf~~~---------C~~CH~~~ 30 (112)
..++.|++||... |++||..+
T Consensus 29 ~~v~lGk~LF~d~~LS~~~~~sCasCH~~~ 58 (323)
T 2vhd_A 29 QQRELGKKLFFDPRLSRSHVLSCNTCHNVG 58 (323)
T ss_dssp HHHHHHHHHHTCGGGSSSSCCCHHHHSCGG
T ss_pred HHHHHHHHHhcCccccCCCCcchhhcCCCc
Confidence 4468999999754 99999874
No 106
>3o5c_A Cytochrome C551 peroxidase; diheme cytochrome, hydrogen peroxide, oxidoreductase; HET: HEM; 1.80A {Shewanella oneidensis}
Probab=96.52 E-value=0.0068 Score=42.52 Aligned_cols=21 Identities=24% Similarity=0.656 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHh---------hCccccccc
Q 033769 10 GNPKAGEKIFKT---------KCAQCHTVV 30 (112)
Q Consensus 10 ~~~~~G~~lf~~---------~C~~CH~~~ 30 (112)
+.++-|+.||-. .|++||...
T Consensus 25 ~kv~LGk~LFfD~rLS~~~~~SCasCH~p~ 54 (320)
T 3o5c_A 25 EKVELGKMLFFEPRLSKSGFISCNSCHNLS 54 (320)
T ss_dssp HHHHHHHHHHTCGGGSTTSCCCHHHHSCTT
T ss_pred HHHHHHHHHhCCcccCCCCCCCccccCCcc
Confidence 446899999953 399999765
No 107
>2fw5_A DHC, diheme cytochrome C; electron transfer, electron transport; HET: HEM; 2.00A {Rhodobacter sphaeroides}
Probab=95.97 E-value=0.014 Score=36.20 Aligned_cols=16 Identities=25% Similarity=0.756 Sum_probs=13.3
Q ss_pred HHHHHHhhCccccccc
Q 033769 15 GEKIFKTKCAQCHTVV 30 (112)
Q Consensus 15 G~~lf~~~C~~CH~~~ 30 (112)
++.+|...|++||...
T Consensus 16 ~~~~y~~~C~~CH~a~ 31 (139)
T 2fw5_A 16 TDPLTRTECSACHMAY 31 (139)
T ss_dssp CCHHHHHHTTSSSCCC
T ss_pred cHHHHHHHHHhccCCC
Confidence 4678999999999864
No 108
>2fwt_A DHC, diheme cytochrome C; diheme protein, electron transfer, sphaeroides heme protein, oxygen-binding, electron transpor; HET: HEM; 1.85A {Rhodobacter sphaeroides}
Probab=95.94 E-value=0.024 Score=34.47 Aligned_cols=15 Identities=27% Similarity=0.831 Sum_probs=12.6
Q ss_pred HHHHHhhCccccccc
Q 033769 16 EKIFKTKCAQCHTVV 30 (112)
Q Consensus 16 ~~lf~~~C~~CH~~~ 30 (112)
+.+|...|++||...
T Consensus 6 ~~~y~~~C~~CH~a~ 20 (125)
T 2fwt_A 6 DPLTRTECSACHMAY 20 (125)
T ss_dssp CHHHHHHTSSSSCCC
T ss_pred HHHHHHHHHhccCCC
Confidence 568999999999864
No 109
>3u99_A Diheme cytochrome C; cytochrome C fold, electron transfer protein, electron trans diheme protein, bacterium shewanella baltica OS155; HET: HEC; 1.15A {Shewanella baltica}
Probab=93.98 E-value=0.18 Score=31.46 Aligned_cols=13 Identities=23% Similarity=0.830 Sum_probs=10.8
Q ss_pred HHHhhCccccccc
Q 033769 18 IFKTKCAQCHTVV 30 (112)
Q Consensus 18 lf~~~C~~CH~~~ 30 (112)
.|.+.|++||-..
T Consensus 14 ~Y~~eCgsCH~Ay 26 (148)
T 3u99_A 14 EYTAECGSCHMAY 26 (148)
T ss_dssp HHHHHHSSSSCCC
T ss_pred HHHHHHHhCCccc
Confidence 5888899999754
No 110
>3hq9_A Cytochrome C551 peroxidase; oxidoreductase; HET: HEM; 1.52A {Geobacter sulfurreducens} PDB: 3hq6_A* 3hq8_A* 3hq7_A*
Probab=92.05 E-value=0.034 Score=39.37 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHh---------hCcccccccC
Q 033769 10 GNPKAGEKIFKT---------KCAQCHTVVK 31 (112)
Q Consensus 10 ~~~~~G~~lf~~---------~C~~CH~~~~ 31 (112)
..++.|++||.. .|++||..+.
T Consensus 51 ~~v~lG~~LF~d~rLS~~~~~sCasCH~~~~ 81 (345)
T 3hq9_A 51 VKVELGKMLYFDPRLSASHLISCNTCHNVGL 81 (345)
T ss_dssp HHHHHHHHHHHCGGGSTTSCCCHHHHSBTTT
T ss_pred HHHHHHHHHhCCcccCCCCCCchhhcCChhh
Confidence 346899999975 5999999753
No 111
>1pby_A Quinohemoprotein amine dehydrogenase 60 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jju_A*
Probab=91.64 E-value=0.021 Score=41.91 Aligned_cols=21 Identities=14% Similarity=0.487 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHhhCccccccc
Q 033769 10 GNPKAGEKIFKTKCAQCHTVV 30 (112)
Q Consensus 10 ~~~~~G~~lf~~~C~~CH~~~ 30 (112)
.+...|.++|.++|+.||...
T Consensus 87 ~~~~~ggelfr~nCA~CHn~A 107 (489)
T 1pby_A 87 AWDEGPDTSMTQTCGRCHSYA 107 (489)
T ss_dssp CCCCCSSHHHHHHHSSSSCTH
T ss_pred CcccCchhhHHhhHhhhCCch
Confidence 355567889999999999864
No 112
>1nml_A DI-HAEM cytochrome C peroxidase; oxidoreductase, electron transport; HET: HEM CIT; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.5 a.3.1.5 PDB: 1rz5_A* 1rz6_A*
Probab=90.86 E-value=0.065 Score=37.55 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHh---------hCccccccc
Q 033769 10 GNPKAGEKIFKT---------KCAQCHTVV 30 (112)
Q Consensus 10 ~~~~~G~~lf~~---------~C~~CH~~~ 30 (112)
..++.|++||.. .|++||...
T Consensus 29 ~~v~lGk~LF~D~~LS~~~~~sCasCH~~~ 58 (326)
T 1nml_A 29 AKVELGKMEFFEPRLSSSHLISCNTCHNVG 58 (326)
T ss_dssp HHHHHHHHHHTCGGGSTTSCCCHHHHSCTT
T ss_pred HHHHHHHHHhcCcccccCCCccchhcCCcc
Confidence 346899999964 499999864
No 113
>4aan_A Cytochrome C551 peroxidase; oxidoreductase, multiheme cytochromes, conformational rearra; HET: HEC; 1.22A {Geobacter sulfurreducens} PDB: 4aam_A* 4aal_A* 4aao_A*
Probab=86.15 E-value=0.17 Score=35.72 Aligned_cols=20 Identities=30% Similarity=0.667 Sum_probs=15.2
Q ss_pred CHHHHHHHHHh---------hCccccccc
Q 033769 11 NPKAGEKIFKT---------KCAQCHTVV 30 (112)
Q Consensus 11 ~~~~G~~lf~~---------~C~~CH~~~ 30 (112)
.++-|++||-. .|++||...
T Consensus 47 kv~LGr~LFfD~~LS~~~~~SCASCH~~~ 75 (341)
T 4aan_A 47 RVELGRMLFFDPRLSASHLISCNTCHNVG 75 (341)
T ss_dssp HHHHHHHHHHCGGGSTTSCCCHHHHSBGG
T ss_pred HHHHHHHHhcCcccCCCcCCCccccCCcc
Confidence 36789999942 499999754
No 114
>3sjl_A Methylamine utilization protein MAUG; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 3sle_A* 3svw_A* 3sxt_A* 3l4o_A* 3pxs_A* 3pxt_A* 3pxw_A* 3l4m_A* 3sws_A* 3orv_A* 3rmz_A* 3rlm_A* 3rn0_A* 3rn1_A*
Probab=84.98 E-value=0.2 Score=35.85 Aligned_cols=22 Identities=27% Similarity=0.680 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHh---------hCcccccccC
Q 033769 10 GNPKAGEKIFKT---------KCAQCHTVVK 31 (112)
Q Consensus 10 ~~~~~G~~lf~~---------~C~~CH~~~~ 31 (112)
+.++-|+.||-. .|++||....
T Consensus 9 ~kv~LGk~LFfD~rLS~~~~iSCaSCH~p~~ 39 (373)
T 3sjl_A 9 ALAALGAQLFVDPALSRNATQSCATCHDPAR 39 (373)
T ss_dssp HHHHHHHHHHTCGGGSTTSCCCHHHHSBGGG
T ss_pred HHHHHHHHHhCCCccCCCCCcCchhhCCccc
Confidence 346789999931 4999998763
No 115
>3b42_A GSU0935, methyl-accepting chemotaxis protein, putative; PAS domain, C-type heme containing sensor, unknown function, signaling protein; HET: HEM; 1.90A {Geobacter sulfurreducens}
Probab=73.35 E-value=1.1 Score=26.97 Aligned_cols=9 Identities=33% Similarity=1.176 Sum_probs=7.2
Q ss_pred hhCcccccc
Q 033769 21 TKCAQCHTV 29 (112)
Q Consensus 21 ~~C~~CH~~ 29 (112)
..|..||..
T Consensus 104 ~~Cl~CH~~ 112 (135)
T 3b42_A 104 QRCQSCHDA 112 (135)
T ss_dssp GGGGGTSCT
T ss_pred cChHhhcCC
Confidence 469999964
No 116
>3b47_A GSU0582, methyl-accepting chemotaxis protein; PAS domain, C-type heme containing sensor, unknown function, signaling protein; HET: HEM; 2.00A {Geobacter sulfurreducens}
Probab=70.01 E-value=1.3 Score=26.77 Aligned_cols=9 Identities=33% Similarity=1.114 Sum_probs=7.4
Q ss_pred hhCcccccc
Q 033769 21 TKCAQCHTV 29 (112)
Q Consensus 21 ~~C~~CH~~ 29 (112)
..|..||..
T Consensus 103 ~~C~~CH~~ 111 (134)
T 3b47_A 103 VRCQSCHEQ 111 (134)
T ss_dssp TTGGGTSCT
T ss_pred CCchhhhCC
Confidence 369999976
No 117
>3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A {Geobacillus stearothermophilus} PDB: 3ayg_A*
Probab=67.47 E-value=1 Score=35.36 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHhh-CcccccccCCCCCCCCCCCCC
Q 033769 10 GNPKAGEKIFKTK-CAQCHTVVKGAGHKQGPNLNG 43 (112)
Q Consensus 10 ~~~~~G~~lf~~~-C~~CH~~~~~~~~~~gP~l~~ 43 (112)
+|..+||.+|++. |..||++-|. +...||+++.
T Consensus 67 ~dI~~Gq~~~q~~g~m~~GSi~Gh-GaY~aPD~TA 100 (800)
T 3ayf_A 67 ETIIGGQAVFQKYGLMDYGTVLGH-GSYMGPDYTA 100 (800)
T ss_dssp HHHHHHHHHHHHTTGGGTSEETTE-ECSSSCBHHH
T ss_pred HHHHHhHHHHHHcCCcccCccccC-CcccCcchHH
Confidence 3589999999985 9999999753 4678998874
No 118
>2czs_A DHC2, cytochrome C, putative; diheme, C-type cytochrome, electron transport; HET: HEM; 1.50A {Geobacter sulfurreducens}
Probab=58.43 E-value=4.2 Score=22.30 Aligned_cols=10 Identities=30% Similarity=1.142 Sum_probs=7.4
Q ss_pred HHhhCccccc
Q 033769 19 FKTKCAQCHT 28 (112)
Q Consensus 19 f~~~C~~CH~ 28 (112)
..+.|..||-
T Consensus 33 aE~~C~~CH~ 42 (80)
T 2czs_A 33 LDRQCVECHH 42 (80)
T ss_dssp HHHHHTTTSC
T ss_pred HHhcchhhcc
Confidence 3457999993
No 119
>3oao_A Uncharacterized protein from DUF2059 family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.72A {Pseudomonas aeruginosa} PDB: 2x3o_A
Probab=53.10 E-value=8 Score=23.90 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=15.3
Q ss_pred CCCCCCHHHHHHHHHHHHh
Q 033769 91 FPGLKKPQDRADLIAYLKE 109 (112)
Q Consensus 91 ~~~~l~~~ei~~l~ayl~s 109 (112)
|....|++|+.+|++|.+|
T Consensus 76 Y~~~fT~~El~~l~~FY~s 94 (147)
T 3oao_A 76 YTTNFTESELKDLNAFYQS 94 (147)
T ss_dssp HHHHSCHHHHHHHHHHHHS
T ss_pred HHHHCCHHHHHHHHHHHCC
Confidence 3445689999999999975
No 120
>1ehj_A Cytochrome C7; multi-heme, electron transport; HET: HEC; NMR {Desulfuromonas acetoxidans} SCOP: a.138.1.1 PDB: 1f22_A* 1hh5_A* 1lm2_A* 1new_A* 2new_A* 1kwj_A* 1l3o_A*
Probab=50.24 E-value=3.4 Score=21.97 Aligned_cols=15 Identities=27% Similarity=0.629 Sum_probs=11.7
Q ss_pred HHHHHH-hhCcccccc
Q 033769 15 GEKIFK-TKCAQCHTV 29 (112)
Q Consensus 15 G~~lf~-~~C~~CH~~ 29 (112)
++.+|. ..|..||.-
T Consensus 40 ~~~~~h~~~C~~CH~~ 55 (68)
T 1ehj_A 40 DKKSAHKDACKTCHKS 55 (68)
T ss_dssp CHHHHHHHSHHHHGGG
T ss_pred HHHHHhccHHHHHhcc
Confidence 467777 689999974
No 121
>1ogy_B Diheme cytochrome C NAPB molecule: nitrate reductase; oxidoreductase; HET: MGD HEC; 3.2A {Rhodobacter sphaeroides} SCOP: a.138.1.3
Probab=50.17 E-value=10 Score=23.02 Aligned_cols=10 Identities=30% Similarity=0.880 Sum_probs=7.9
Q ss_pred hCcccccccC
Q 033769 22 KCAQCHTVVK 31 (112)
Q Consensus 22 ~C~~CH~~~~ 31 (112)
.|.+||....
T Consensus 57 ~ClsCH~~~~ 66 (130)
T 1ogy_B 57 RCLECHRRQY 66 (130)
T ss_dssp GGGGTSCCCC
T ss_pred cCcccCCccc
Confidence 4999998653
No 122
>3h34_A Cytochrome C7, cytochrome C3; multiheme cytochrome, geobacter sulfurreducen electron transport; HET: HEM; 1.60A {Geobacter sulfurreducens} SCOP: a.138.1.1
Probab=46.20 E-value=3.6 Score=22.07 Aligned_cols=15 Identities=27% Similarity=0.631 Sum_probs=11.2
Q ss_pred HHHHHhhCccccccc
Q 033769 16 EKIFKTKCAQCHTVV 30 (112)
Q Consensus 16 ~~lf~~~C~~CH~~~ 30 (112)
+.++...|..||.-.
T Consensus 43 k~~~~~~C~~CH~~~ 57 (70)
T 3h34_A 43 KDYAHKTCKGCHEVR 57 (70)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhhcChhHHHhhhh
Confidence 556767899999743
No 123
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=46.17 E-value=18 Score=21.34 Aligned_cols=17 Identities=6% Similarity=0.003 Sum_probs=14.6
Q ss_pred CCCCHHHHHHHHHHHHh
Q 033769 93 GLKKPQDRADLIAYLKE 109 (112)
Q Consensus 93 ~~l~~~ei~~l~ayl~s 109 (112)
..||++||.+|++.|..
T Consensus 39 r~Ltdeev~~Va~~L~~ 55 (112)
T 2lky_A 39 RRLTNDEIKAIAEDLEK 55 (112)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 56899999999999853
No 124
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=45.86 E-value=18 Score=21.00 Aligned_cols=17 Identities=6% Similarity=-0.083 Sum_probs=14.5
Q ss_pred CCCCHHHHHHHHHHHHh
Q 033769 93 GLKKPQDRADLIAYLKE 109 (112)
Q Consensus 93 ~~l~~~ei~~l~ayl~s 109 (112)
..||++|+.+|++.|..
T Consensus 37 r~Ltdeev~~Va~~L~~ 53 (103)
T 2kvc_A 37 RRLSHDEVKAVANELMR 53 (103)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 56899999999999853
No 125
>3h4n_A Cytochrome C7, cytochrome C3; multiheme cytochrome, geobacter sulfurreducen electron transport; HET: HEM; 1.35A {Geobacter sulfurreducens} SCOP: a.138.1.1
Probab=40.29 E-value=5 Score=21.47 Aligned_cols=14 Identities=21% Similarity=0.600 Sum_probs=10.3
Q ss_pred HHHHHhhCcccccc
Q 033769 16 EKIFKTKCAQCHTV 29 (112)
Q Consensus 16 ~~lf~~~C~~CH~~ 29 (112)
+.++...|..||.-
T Consensus 45 ~~~~~~~C~~CH~~ 58 (72)
T 3h4n_A 45 KDWAHKTCTGCHKE 58 (72)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhcChHHHHhCc
Confidence 44566689999974
No 126
>1ci3_M Protein (cytochrome F); electron transfer protein, complex subunit, electron transpo; HET: HEM; 1.90A {Phormidium laminosum} SCOP: b.2.6.1 b.84.2.2 PDB: 1tu2_B*
Probab=39.86 E-value=6.8 Score=26.11 Aligned_cols=8 Identities=50% Similarity=1.215 Sum_probs=6.5
Q ss_pred hCcccccc
Q 033769 22 KCAQCHTV 29 (112)
Q Consensus 22 ~C~~CH~~ 29 (112)
.|+.||=.
T Consensus 20 VCANCHLa 27 (249)
T 1ci3_M 20 VCANCHLA 27 (249)
T ss_dssp GGGGTCCS
T ss_pred Eeeccccc
Confidence 49999964
No 127
>1hcz_A Cytochrome F; electron transport, photosynthesis, cytochrome B6F complex, chloroplast transmembrane; HET: HEM; 1.96A {Brassica rapa} SCOP: b.2.6.1 b.84.2.2 PDB: 1tkw_B* 1ctm_A* 2pcf_B*
Probab=39.66 E-value=6.9 Score=26.13 Aligned_cols=8 Identities=50% Similarity=1.215 Sum_probs=6.5
Q ss_pred hCcccccc
Q 033769 22 KCAQCHTV 29 (112)
Q Consensus 22 ~C~~CH~~ 29 (112)
.|+.||=.
T Consensus 20 VCANCHLA 27 (252)
T 1hcz_A 20 VCANCHLA 27 (252)
T ss_dssp GGGGTCCS
T ss_pred Eeeccccc
Confidence 49999964
No 128
>1e2w_A Cytochrome F; electron transport proteins, internal water chain, photosynthetic function impaired; HET: HEC; 1.6A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 PDB: 1cfm_A* 1ewh_A* 1e2v_A* 1e2z_A*
Probab=39.62 E-value=6.9 Score=26.11 Aligned_cols=8 Identities=50% Similarity=1.215 Sum_probs=6.5
Q ss_pred hCcccccc
Q 033769 22 KCAQCHTV 29 (112)
Q Consensus 22 ~C~~CH~~ 29 (112)
.|+.||=.
T Consensus 20 VCANCHLA 27 (251)
T 1e2w_A 20 VCANCHLA 27 (251)
T ss_dssp GGGGTCCS
T ss_pred Eeeccccc
Confidence 49999964
No 129
>1rwj_A Cytochrome C family protein; multiheme cytochrome C, geobacter metallireducens, heme coordination in C-type cytochromes; HET: HEM; 1.70A {Geobacter sulfurreducens} SCOP: a.138.1.1
Probab=38.59 E-value=8.9 Score=21.11 Aligned_cols=12 Identities=33% Similarity=0.880 Sum_probs=8.5
Q ss_pred HHHH-hhCccccc
Q 033769 17 KIFK-TKCAQCHT 28 (112)
Q Consensus 17 ~lf~-~~C~~CH~ 28 (112)
.++. ..|..||.
T Consensus 53 ~~~~g~~C~~CH~ 65 (82)
T 1rwj_A 53 DMDKGKSCGACHN 65 (82)
T ss_dssp HHHTTCGGGGTTT
T ss_pred HHHcCChhHHHhC
Confidence 3444 46999995
No 130
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=37.60 E-value=13 Score=16.13 Aligned_cols=10 Identities=40% Similarity=1.065 Sum_probs=7.6
Q ss_pred HHhhCccccc
Q 033769 19 FKTKCAQCHT 28 (112)
Q Consensus 19 f~~~C~~CH~ 28 (112)
..+.|+.|..
T Consensus 12 leqkcaaceq 21 (32)
T 4g1a_A 12 LEQKCAACEQ 21 (32)
T ss_dssp HHHHTSSHHH
T ss_pred HHHHHHHHHH
Confidence 4567999985
No 131
>1oqe_K Tumor necrosis factor receptor superfamily member 13C; ligand receptor complex, immune system; 2.50A {Homo sapiens} SCOP: g.24.1.2
Probab=36.79 E-value=5.8 Score=17.62 Aligned_cols=10 Identities=20% Similarity=0.680 Sum_probs=7.7
Q ss_pred hhCccccccc
Q 033769 21 TKCAQCHTVV 30 (112)
Q Consensus 21 ~~C~~CH~~~ 30 (112)
++|.+||=..
T Consensus 15 R~CVaC~Ll~ 24 (31)
T 1oqe_K 15 RHCVACGLLR 24 (31)
T ss_dssp TEEEEGGGSC
T ss_pred hcceEEEEEe
Confidence 4799999654
No 132
>1vf5_C Cytochrome F; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.2.6.1 b.84.2.2 f.23.23.1 PDB: 2d2c_C* 2e74_C* 2e75_C* 2e76_C* 2zt9_C*
Probab=36.21 E-value=8.4 Score=26.19 Aligned_cols=8 Identities=50% Similarity=1.215 Sum_probs=6.3
Q ss_pred hCcccccc
Q 033769 22 KCAQCHTV 29 (112)
Q Consensus 22 ~C~~CH~~ 29 (112)
.|+.||=.
T Consensus 21 VCANCHLa 28 (289)
T 1vf5_C 21 VCANCHLA 28 (289)
T ss_dssp GGGGTCCC
T ss_pred Eeeccccc
Confidence 49999964
No 133
>1m0f_B GPB, scaffolding protein B; bacteriophage, cryo electron microscopy, procapsid, morphogenesis, microviridae, assembly; 16.00A {Enterobacteria phage ALPHA3} SCOP: i.6.1.1
Probab=35.48 E-value=18 Score=18.94 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=14.4
Q ss_pred CHHHHHHHHHhh--Cccccc
Q 033769 11 NPKAGEKIFKTK--CAQCHT 28 (112)
Q Consensus 11 ~~~~G~~lf~~~--C~~CH~ 28 (112)
+++.|+..|... |+.|--
T Consensus 14 eie~~ks~~~R~fG~A~~dd 33 (68)
T 1m0f_B 14 EIEAGKSYCSRRFGGATCDD 33 (68)
T ss_pred HHHHHHHHHHHHcCCCCcch
Confidence 467899999874 999974
No 134
>2j7a_C Cytochrome C quinol dehydrogenase NRFH; cytochrome C nitrite reductase, NRFA, NAPC/NIRT family, membrane complex, oxidoreductase; HET: HEM LMT; 2.3A {Desulfovibrio vulgaris} PDB: 2vr0_C*
Probab=34.42 E-value=8.1 Score=23.79 Aligned_cols=15 Identities=27% Similarity=0.895 Sum_probs=10.8
Q ss_pred HHHHHhhCccccccc
Q 033769 16 EKIFKTKCAQCHTVV 30 (112)
Q Consensus 16 ~~lf~~~C~~CH~~~ 30 (112)
..+.+..|..||+..
T Consensus 109 ~~~~~~~C~~CH~~~ 123 (159)
T 2j7a_C 109 KEVVNANCKACHTMT 123 (159)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCCCcccccccCccc
Confidence 455566799999864
No 135
>3h33_A Cytochrome C7, cytochrome C3; multiheme cytochrome, geobacter sulfurreducen electron transport; HET: HEM; 2.25A {Geobacter sulfurreducens} SCOP: a.138.1.1
Probab=34.03 E-value=6.2 Score=21.47 Aligned_cols=14 Identities=29% Similarity=0.667 Sum_probs=10.3
Q ss_pred HHHHHhh-Ccccccc
Q 033769 16 EKIFKTK-CAQCHTV 29 (112)
Q Consensus 16 ~~lf~~~-C~~CH~~ 29 (112)
+..+... |..||.-
T Consensus 43 ~~~~h~~~C~~CH~~ 57 (75)
T 3h33_A 43 KVMAHGKGCKGCHEE 57 (75)
T ss_dssp HHHHTTTTTHHHHHH
T ss_pred HhHHhcChhHHHhhh
Confidence 4556667 9999964
No 136
>2k3v_A Tetraheme cytochrome C-type; multihaem cytochromes, redox proteins, electron transport, iron, metal-binding, periplasm, transport; HET: HEM; NMR {Shewanella frigidimarina}
Probab=33.62 E-value=14 Score=20.26 Aligned_cols=11 Identities=27% Similarity=0.812 Sum_probs=8.3
Q ss_pred HhhCccccccc
Q 033769 20 KTKCAQCHTVV 30 (112)
Q Consensus 20 ~~~C~~CH~~~ 30 (112)
...|..||+..
T Consensus 32 ~~~C~~CH~~~ 42 (86)
T 2k3v_A 32 FEQCQSCHGSL 42 (86)
T ss_dssp HHHTSSSSCCG
T ss_pred cchHhHhccCH
Confidence 34799999854
No 137
>2je2_A Cytochrome P460; heme P460, cross-linked heme, metal binding protein; HET: HEC; 1.8A {Nitrosomonas europaea} PDB: 2je3_A*
Probab=33.61 E-value=6.3 Score=25.33 Aligned_cols=10 Identities=40% Similarity=0.966 Sum_probs=7.8
Q ss_pred hhCccccccc
Q 033769 21 TKCAQCHTVV 30 (112)
Q Consensus 21 ~~C~~CH~~~ 30 (112)
..|..||...
T Consensus 135 ~~C~~CH~~~ 144 (186)
T 2je2_A 135 AECAACHKEN 144 (186)
T ss_dssp TTTHHHHHHH
T ss_pred ccchhhCCcc
Confidence 3699999864
No 138
>1al0_B Scaffolding protein GPB; complex (virus capsid proteins), bacteriophage, procapsid, chaperone, icosahedral virus; 3.50A {Enterobacteria phage PHIX174} PDB: 1cd3_B
Probab=33.50 E-value=11 Score=22.13 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=5.0
Q ss_pred CCHHHHHHHHHhh--Cccccc
Q 033769 10 GNPKAGEKIFKTK--CAQCHT 28 (112)
Q Consensus 10 ~~~~~G~~lf~~~--C~~CH~ 28 (112)
.+++.|+.+|... |+.|--
T Consensus 65 ~~iE~~k~~~~R~FG~A~~~d 85 (120)
T 1al0_B 65 DEIEAGKSYCSRRFGGATCDD 85 (120)
T ss_dssp ---------------CCCCST
T ss_pred HHHHHHHHHHHHHcCCCCcch
Confidence 4678899999874 999974
No 139
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=32.31 E-value=41 Score=19.59 Aligned_cols=18 Identities=0% Similarity=-0.147 Sum_probs=14.8
Q ss_pred CCCCCHHHHHHHHHHHHh
Q 033769 92 PGLKKPQDRADLIAYLKE 109 (112)
Q Consensus 92 ~~~l~~~ei~~l~ayl~s 109 (112)
...||++|+.+|+..|..
T Consensus 41 ~R~Ltddev~~Va~~L~~ 58 (107)
T 3ol3_A 41 KRSLTEDEVVRAAQAILR 58 (107)
T ss_dssp TCCCCHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHh
Confidence 356899999999998854
No 140
>2m0n_A Putative uncharacterized protein; tuberculosis, structural genomics, seattle structural genomi for infectious disease, ssgcid; NMR {Mycobacterium abscessus}
Probab=31.84 E-value=41 Score=19.77 Aligned_cols=18 Identities=11% Similarity=0.176 Sum_probs=14.3
Q ss_pred CCCCCHHHHHHHHHHHHh
Q 033769 92 PGLKKPQDRADLIAYLKE 109 (112)
Q Consensus 92 ~~~l~~~ei~~l~ayl~s 109 (112)
...||++|+..|+.-|..
T Consensus 38 ~R~LtdeEV~~Va~~L~~ 55 (112)
T 2m0n_A 38 RRTLTEEQVQEVVAKLTD 55 (112)
T ss_dssp CSSCCHHHHHHHHHHHTC
T ss_pred hccCCHHHHHHHHHHHHh
Confidence 355789999999988743
No 141
>3bxu_A Cytochrome C3; multiheme cytochromes, electron transport; HET: HEM; 1.35A {Geobacter sulfurreducens} PDB: 1os6_A* 2ldo_A*
Probab=31.74 E-value=11 Score=19.90 Aligned_cols=14 Identities=21% Similarity=0.691 Sum_probs=10.3
Q ss_pred HHHHH-hhCcccccc
Q 033769 16 EKIFK-TKCAQCHTV 29 (112)
Q Consensus 16 ~~lf~-~~C~~CH~~ 29 (112)
+..+. ..|..||.-
T Consensus 43 ~~~~~~~~C~~CH~~ 57 (71)
T 3bxu_A 43 KEMAHGKSCKGCHEE 57 (71)
T ss_dssp HHHHHTTTTHHHHHH
T ss_pred hhccccCHHHHHhcc
Confidence 45666 579999964
No 142
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=31.37 E-value=17 Score=17.84 Aligned_cols=11 Identities=18% Similarity=0.821 Sum_probs=8.6
Q ss_pred hhCcccccccC
Q 033769 21 TKCAQCHTVVK 31 (112)
Q Consensus 21 ~~C~~CH~~~~ 31 (112)
.+|..|+.++.
T Consensus 28 r~C~rCw~LRk 38 (46)
T 2c6a_A 28 SHCNRCWALRE 38 (46)
T ss_dssp SSCTTTCCCCS
T ss_pred chhhHHHhhcc
Confidence 47999998864
No 143
>2jxm_B Cytochrome F; copper, electron transport, metal-binding, transport; HET: HEC; NMR {Prochlorothrix hollandica} SCOP: i.4.1.1
Probab=30.33 E-value=6.8 Score=26.07 Aligned_cols=8 Identities=50% Similarity=1.215 Sum_probs=6.5
Q ss_pred hCcccccc
Q 033769 22 KCAQCHTV 29 (112)
Q Consensus 22 ~C~~CH~~ 29 (112)
.|+.||=.
T Consensus 20 VCANCHLa 27 (249)
T 2jxm_B 20 VCANCHLA 27 (249)
T ss_dssp THHHHCCS
T ss_pred Eeeccccc
Confidence 49999964
No 144
>3cao_A Cytochrome C3; tetraheme, oxidised form, electron transport; HET: HEM; 1.60A {Desulfovibrio africanus} SCOP: a.138.1.1 PDB: 3car_A*
Probab=29.69 E-value=9.6 Score=21.70 Aligned_cols=13 Identities=23% Similarity=0.705 Sum_probs=9.6
Q ss_pred HHHhhCccccccc
Q 033769 18 IFKTKCAQCHTVV 30 (112)
Q Consensus 18 lf~~~C~~CH~~~ 30 (112)
.|-..|..||.-.
T Consensus 77 a~H~~C~~CH~~~ 89 (103)
T 3cao_A 77 AYHQQCWGCHEKQ 89 (103)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hccChHHHHhHHh
Confidence 4556799999753
No 145
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=28.17 E-value=44 Score=19.85 Aligned_cols=17 Identities=6% Similarity=0.122 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHHHHhhc
Q 033769 95 KKPQDRADLIAYLKEST 111 (112)
Q Consensus 95 l~~~ei~~l~ayl~sl~ 111 (112)
+++++++.|+.++..+.
T Consensus 112 Ls~e~~~~l~~ii~~l~ 128 (135)
T 3r1f_A 112 LPSAAQQKVLDRIDELR 128 (135)
T ss_dssp CCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 67999999999998775
No 146
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=28.10 E-value=45 Score=21.72 Aligned_cols=19 Identities=16% Similarity=0.114 Sum_probs=15.0
Q ss_pred CCCCCCHHHHHHHHHHHHh
Q 033769 91 FPGLKKPQDRADLIAYLKE 109 (112)
Q Consensus 91 ~~~~l~~~ei~~l~ayl~s 109 (112)
.....+.+|+..++.||.|
T Consensus 217 l~R~g~peevA~~v~fL~S 235 (256)
T 4fs3_A 217 LKRNVDQVEVGKTAAYLLS 235 (256)
T ss_dssp TSSCCCHHHHHHHHHHHHS
T ss_pred CCCCcCHHHHHHHHHHHhC
Confidence 3345579999999999975
No 147
>1jni_A NAPB;, diheme cytochrome C NAPB; dihaem cytochrome C, proteolytic fragment, nitrate reductase subunit, oxidoreductase; HET: HEM; 1.25A {Haemophilus influenzae} SCOP: a.138.1.3
Probab=26.96 E-value=15 Score=22.02 Aligned_cols=9 Identities=44% Similarity=0.914 Sum_probs=6.8
Q ss_pred hCccccccc
Q 033769 22 KCAQCHTVV 30 (112)
Q Consensus 22 ~C~~CH~~~ 30 (112)
.|..||-..
T Consensus 96 ~CtqCHVPQ 104 (123)
T 1jni_A 96 FCLQCHVSQ 104 (123)
T ss_dssp CGGGTCCC-
T ss_pred ecccccCCc
Confidence 499999764
No 148
>3v2d_4 50S ribosomal protein L31; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_3 2hgj_3 2hgu_3 2j03_4 2v47_4 2v49_4 2wdi_4 2wdj_4 2wdl_4 2wdn_4 2wh2_4 2wrj_4 2wrl_4 2wro_4 2wrr_4 2x9s_4 2x9u_4 2xg0_4 2xg2_4 2xqe_4 ...
Probab=26.31 E-value=18 Score=19.51 Aligned_cols=10 Identities=30% Similarity=0.962 Sum_probs=7.6
Q ss_pred hhCccccccc
Q 033769 21 TKCAQCHTVV 30 (112)
Q Consensus 21 ~~C~~CH~~~ 30 (112)
..|+.||-..
T Consensus 34 di~S~~HPFy 43 (71)
T 3v2d_4 34 EVCSKCHPFY 43 (71)
T ss_dssp SCCTTTSSSS
T ss_pred EecCCCCCCC
Confidence 3699999654
No 149
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=25.39 E-value=47 Score=22.29 Aligned_cols=20 Identities=10% Similarity=0.187 Sum_probs=15.5
Q ss_pred CCCCCCCHHHHHHHHHHHHh
Q 033769 90 VFPGLKKPQDRADLIAYLKE 109 (112)
Q Consensus 90 ~~~~~l~~~ei~~l~ayl~s 109 (112)
|...+.+.+||.+++.||.|
T Consensus 234 PlgR~g~peeiA~~v~FLaS 253 (273)
T 4fgs_A 234 PMGRVGRAEEVAAAALFLAS 253 (273)
T ss_dssp TTSSCBCHHHHHHHHHHHHS
T ss_pred CCCCCcCHHHHHHHHHHHhC
Confidence 33445579999999999975
No 150
>3g27_A 82 prophage-derived uncharacterized protein YBCO; E.coli, prophage-associated, zinc-binding, structural genomi 2; 2.10A {Escherichia coli k-12}
Probab=25.37 E-value=10 Score=21.73 Aligned_cols=8 Identities=38% Similarity=1.149 Sum_probs=6.6
Q ss_pred hCcccccc
Q 033769 22 KCAQCHTV 29 (112)
Q Consensus 22 ~C~~CH~~ 29 (112)
.|+.||..
T Consensus 53 ~Cs~CH~~ 60 (96)
T 3g27_A 53 ACSACHDE 60 (96)
T ss_dssp ECHHHHHH
T ss_pred hHHHHHHH
Confidence 49999975
No 151
>1vs6_Z 50S ribosomal protein L31; ribosome, kasugamycin; 3.46A {Escherichia coli} SCOP: d.325.1.2 PDB: 1vs8_Z 2aw4_Z 2awb_Z 2j28_Z 2rdo_Z 2vhm_Z 2vhn_Z 3bbx_Z 3e1b_S 3e1d_S 3iyx_A 3iyy_A 3izt_b* 3izu_b* 3j0t_2* 3j0w_2* 3j0y_2* 3j11_2* 3j12_2* 3j14_2*
Probab=25.30 E-value=19 Score=19.27 Aligned_cols=11 Identities=27% Similarity=0.851 Sum_probs=8.2
Q ss_pred HhhCccccccc
Q 033769 20 KTKCAQCHTVV 30 (112)
Q Consensus 20 ~~~C~~CH~~~ 30 (112)
...|+.||-..
T Consensus 34 vdi~s~~HPFy 44 (70)
T 1vs6_Z 34 LDVCSKCHPFF 44 (70)
T ss_dssp CBCCSSSCCBC
T ss_pred eeecCCCCccC
Confidence 34699999654
No 152
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=24.23 E-value=62 Score=18.24 Aligned_cols=18 Identities=11% Similarity=0.137 Sum_probs=15.1
Q ss_pred CCCHHHHHHHHHHHHhhc
Q 033769 94 LKKPQDRADLIAYLKEST 111 (112)
Q Consensus 94 ~l~~~ei~~l~ayl~sl~ 111 (112)
-+|++|++.|..+|..+.
T Consensus 107 ~ls~ee~~~l~~~L~~~~ 124 (126)
T 1sd4_A 107 ELNNKEIEELRDILNDIS 124 (126)
T ss_dssp CSCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhhh
Confidence 357999999999998765
No 153
>1nkw_Y 50S ribosomal protein L31; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_Y* 1nwy_Y* 1pnu_Y 1pny_Y 1sm1_Y* 1vor_1 1vou_1 1vow_1 1voy_1 1vp0_1 1xbp_Y* 1yl3_4 2b66_4 2b9n_4 2b9p_4
Probab=24.02 E-value=21 Score=19.35 Aligned_cols=10 Identities=10% Similarity=0.036 Sum_probs=7.6
Q ss_pred hhCccccccc
Q 033769 21 TKCAQCHTVV 30 (112)
Q Consensus 21 ~~C~~CH~~~ 30 (112)
..|+.||-..
T Consensus 34 di~s~~HPFy 43 (73)
T 1nkw_Y 34 DVWSGVHPFW 43 (73)
T ss_pred EECCCCCcCC
Confidence 4699999654
No 154
>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*
Probab=23.59 E-value=54 Score=21.69 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=16.1
Q ss_pred CCCCCCCHHHHHHHHHHHHh
Q 033769 90 VFPGLKKPQDRADLIAYLKE 109 (112)
Q Consensus 90 ~~~~~l~~~ei~~l~ayl~s 109 (112)
|.....+.+|+.+++.||.+
T Consensus 221 PlgR~g~peevA~~v~fLaS 240 (261)
T 4h15_A 221 PLGRPAKPEEVANLIAFLAS 240 (261)
T ss_dssp TTSSCBCHHHHHHHHHHHHS
T ss_pred CCCCCcCHHHHHHHHHHHhC
Confidence 44555679999999999975
No 155
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=23.58 E-value=88 Score=18.19 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=16.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhh
Q 033769 89 MVFPGLKKPQDRADLIAYLKES 110 (112)
Q Consensus 89 m~~~~~l~~~ei~~l~ayl~sl 110 (112)
++|-.-||++||..=|.|+.+.
T Consensus 14 fSyLP~lt~eqI~kQI~Yll~q 35 (109)
T 1rbl_M 14 FSYLPPLSDRQIAAQIEYMIEQ 35 (109)
T ss_dssp TTTSSCCCHHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHC
Confidence 4444457899999999998653
No 156
>1m1q_A Small tetraheme cytochrome C; atomic structure of oxidized tetraheme cytochrome C, electron transport; HET: HEM; 0.97A {Shewanella oneidensis mr-1} SCOP: a.138.1.3 PDB: 1m1p_A* 1m1r_A*
Probab=23.48 E-value=20 Score=19.73 Aligned_cols=9 Identities=33% Similarity=0.815 Sum_probs=7.3
Q ss_pred hCccccccc
Q 033769 22 KCAQCHTVV 30 (112)
Q Consensus 22 ~C~~CH~~~ 30 (112)
.|..||+..
T Consensus 14 ~C~~CH~~~ 22 (91)
T 1m1q_A 14 GCESCHKDG 22 (91)
T ss_dssp CGGGTSGGG
T ss_pred chhHhCCCC
Confidence 699999853
No 157
>1q90_A Apocytochrome F; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 f.23.23.1
Probab=23.47 E-value=11 Score=25.70 Aligned_cols=8 Identities=50% Similarity=1.215 Sum_probs=6.4
Q ss_pred hCcccccc
Q 033769 22 KCAQCHTV 29 (112)
Q Consensus 22 ~C~~CH~~ 29 (112)
.|+.||=.
T Consensus 20 VCANCHLA 27 (292)
T 1q90_A 20 VCANCHLA 27 (292)
T ss_dssp THHHHCCC
T ss_pred Eeeccccc
Confidence 49999964
No 158
>2ozy_A Cytochrome C-type protein NRFB; pentaheme C-type cytochrome, electron transport; HET: HEC; 1.74A {Escherichia coli} PDB: 2p0b_A*
Probab=23.12 E-value=27 Score=21.30 Aligned_cols=10 Identities=30% Similarity=0.866 Sum_probs=7.5
Q ss_pred HhhCcccccc
Q 033769 20 KTKCAQCHTV 29 (112)
Q Consensus 20 ~~~C~~CH~~ 29 (112)
...|..||+.
T Consensus 85 ~~~C~~CH~~ 94 (163)
T 2ozy_A 85 NSVCMSCHLP 94 (163)
T ss_dssp HHHHTTTCCH
T ss_pred cChhhhhCCC
Confidence 4469999974
No 159
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A
Probab=22.99 E-value=22 Score=20.98 Aligned_cols=8 Identities=38% Similarity=1.310 Sum_probs=5.9
Q ss_pred hCcccccc
Q 033769 22 KCAQCHTV 29 (112)
Q Consensus 22 ~C~~CH~~ 29 (112)
.|+.||-.
T Consensus 50 ~CgtC~v~ 57 (123)
T 3n9z_C 50 ACSTCHLI 57 (123)
T ss_dssp SCSTTBC-
T ss_pred EeCCCeeE
Confidence 48999973
No 160
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=22.93 E-value=53 Score=21.67 Aligned_cols=20 Identities=15% Similarity=0.144 Sum_probs=15.5
Q ss_pred CCCCCCCHHHHHHHHHHHHh
Q 033769 90 VFPGLKKPQDRADLIAYLKE 109 (112)
Q Consensus 90 ~~~~~l~~~ei~~l~ayl~s 109 (112)
|...+.+.+|+.+++.||.|
T Consensus 203 PlgR~g~peeiA~~v~fLaS 222 (242)
T 4b79_A 203 PLARWGEAPEVASAAAFLCG 222 (242)
T ss_dssp TTCSCBCHHHHHHHHHHHTS
T ss_pred CCCCCcCHHHHHHHHHHHhC
Confidence 33445579999999999965
No 161
>1xv3_A Penaeidin-4D, PEN-4D; antimicrobial peptide, antifungal peptide, cysteine-rich, disulfide bond, oxidative folding, proline- rich, shrimp, antibiotic; NMR {Synthetic}
Probab=22.60 E-value=28 Score=17.02 Aligned_cols=8 Identities=25% Similarity=0.800 Sum_probs=6.8
Q ss_pred Cccccccc
Q 033769 23 CAQCHTVV 30 (112)
Q Consensus 23 C~~CH~~~ 30 (112)
|.+||++.
T Consensus 23 C~sC~~is 30 (47)
T 1xv3_A 23 CDVCYGIP 30 (47)
T ss_dssp TTCTTTSC
T ss_pred CccccccC
Confidence 99999874
No 162
>3ubr_A Cytochrome C-552; DECA-heme, electron transfer, redox, CYMA, oxidoreductase; HET: HEC; 2.59A {Shewanella oneidensis}
Probab=22.42 E-value=22 Score=25.98 Aligned_cols=9 Identities=56% Similarity=1.088 Sum_probs=7.3
Q ss_pred hCccccccc
Q 033769 22 KCAQCHTVV 30 (112)
Q Consensus 22 ~C~~CH~~~ 30 (112)
.|+.||.-.
T Consensus 167 VCaQCHveY 175 (439)
T 3ubr_A 167 VCAQCHVEY 175 (439)
T ss_dssp TTTTTSSCC
T ss_pred HHHhcccee
Confidence 699999753
No 163
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=22.27 E-value=1e+02 Score=17.99 Aligned_cols=22 Identities=9% Similarity=0.063 Sum_probs=16.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHhh
Q 033769 89 MVFPGLKKPQDRADLIAYLKES 110 (112)
Q Consensus 89 m~~~~~l~~~ei~~l~ayl~sl 110 (112)
++|-.-||++||..=|.|+.+.
T Consensus 16 fSyLP~lt~eqI~kQV~Yll~q 37 (110)
T 1svd_M 16 FSYLPPMNAERIRAQIKYAIAQ 37 (110)
T ss_dssp TTTSCCCCHHHHHHHHHHHHHT
T ss_pred cccCCCCCHHHHHHHHHHHHHC
Confidence 4555557899999999998653
No 164
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=22.14 E-value=1.4e+02 Score=17.94 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=16.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhh
Q 033769 89 MVFPGLKKPQDRADLIAYLKES 110 (112)
Q Consensus 89 m~~~~~l~~~ei~~l~ayl~sl 110 (112)
++|-.-|||+||..=|.||.+.
T Consensus 15 fSyLP~lt~eqI~kQI~Yll~q 36 (128)
T 1wdd_S 15 LSYLPPLTVEDLLKQIEYLLRS 36 (128)
T ss_dssp TTTSSCCCHHHHHHHHHHHHHT
T ss_pred cccCCCCCHHHHHHHHHHHHHC
Confidence 4444557899999999998653
No 165
>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR {Saccharomyces cerevisiae} PDB: 2ese_A
Probab=22.11 E-value=49 Score=19.06 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=10.8
Q ss_pred CCCCHHHHHHHHHHHHhh
Q 033769 93 GLKKPQDRADLIAYLKES 110 (112)
Q Consensus 93 ~~l~~~ei~~l~ayl~sl 110 (112)
...+..-+.+|.+||++|
T Consensus 24 ~~~~~~~~~dV~~WLksL 41 (101)
T 2es6_A 24 SLTDPKLLKNIPMWLKSL 41 (101)
T ss_dssp TTSCHHHHTCHHHHHHTT
T ss_pred ccCCcccccCHHHHHHHc
Confidence 334455556777777665
No 166
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=22.11 E-value=25 Score=26.07 Aligned_cols=9 Identities=33% Similarity=0.885 Sum_probs=7.4
Q ss_pred hCccccccc
Q 033769 22 KCAQCHTVV 30 (112)
Q Consensus 22 ~C~~CH~~~ 30 (112)
.|..||+..
T Consensus 15 ~C~~CH~~~ 23 (572)
T 1d4d_A 15 GCDSCHVSD 23 (572)
T ss_dssp CSTTTSSSS
T ss_pred ChhhhCCCC
Confidence 699999864
No 167
>3c0t_B Mediator of RNA polymerase II transcription subunit 8; beta barrel, channel, protein-protein complex, activator, nucleus; 2.40A {Schizosaccharomyces pombe}
Probab=22.07 E-value=63 Score=14.03 Aligned_cols=14 Identities=21% Similarity=0.484 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhh
Q 033769 97 PQDRADLIAYLKES 110 (112)
Q Consensus 97 ~~ei~~l~ayl~sl 110 (112)
.+-+.||+.|+++-
T Consensus 7 nqmltdilsfmksg 20 (33)
T 3c0t_B 7 NQMLTDILSFMKSG 20 (33)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcc
Confidence 56678999999864
No 168
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=21.93 E-value=77 Score=20.86 Aligned_cols=20 Identities=15% Similarity=0.358 Sum_probs=15.6
Q ss_pred CCCCCCCHHHHHHHHHHHHh
Q 033769 90 VFPGLKKPQDRADLIAYLKE 109 (112)
Q Consensus 90 ~~~~~l~~~ei~~l~ayl~s 109 (112)
|...+.+.+|+.+++.||.+
T Consensus 195 Pl~R~g~pediA~~v~fL~s 214 (247)
T 3ged_A 195 PAGKVGTPKDISNMVLFLCQ 214 (247)
T ss_dssp TTSSCBCHHHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHHh
Confidence 33445579999999999975
No 169
>3ml1_B NAPB, diheme cytochrome C NAPB; heterodimer, oxidoreductase; HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_B*
Probab=21.92 E-value=43 Score=20.36 Aligned_cols=9 Identities=44% Similarity=0.951 Sum_probs=6.8
Q ss_pred hCccccccc
Q 033769 22 KCAQCHTVV 30 (112)
Q Consensus 22 ~C~~CH~~~ 30 (112)
.|..||..-
T Consensus 98 fCtQCHVPQ 106 (135)
T 3ml1_B 98 FCTQCHVPQ 106 (135)
T ss_dssp SGGGTCCBC
T ss_pred eeccccCcc
Confidence 499999753
No 170
>1ft5_A Cytochrome C554; heme-stacking, electron transport; HET: HEM; 1.60A {Nitrosomonas europaea} SCOP: a.138.1.3 PDB: 1bvb_A* 1ft6_A*
Probab=21.90 E-value=26 Score=22.73 Aligned_cols=10 Identities=30% Similarity=0.750 Sum_probs=7.9
Q ss_pred hhCccccccc
Q 033769 21 TKCAQCHTVV 30 (112)
Q Consensus 21 ~~C~~CH~~~ 30 (112)
..|..||...
T Consensus 58 ~~C~~CH~~~ 67 (211)
T 1ft5_A 58 KDCVGCHVDG 67 (211)
T ss_dssp TTTGGGSBSS
T ss_pred ccccccCCCc
Confidence 3599999874
No 171
>1oah_A Cytochrome C nitrite reductase; nitrogen cycle, respiratory nitrite ammonification; HET: HEM; 2.3A {Desulfovibrio desulfuricans} SCOP: a.138.1.3
Probab=21.77 E-value=25 Score=26.19 Aligned_cols=9 Identities=44% Similarity=1.084 Sum_probs=7.4
Q ss_pred hCccccccc
Q 033769 22 KCAQCHTVV 30 (112)
Q Consensus 22 ~C~~CH~~~ 30 (112)
.|..||+..
T Consensus 187 gC~dCHgp~ 195 (519)
T 1oah_A 187 GCANCHDPA 195 (519)
T ss_dssp CGGGTBCTT
T ss_pred ChhhcCCcc
Confidence 399999875
No 172
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=21.26 E-value=71 Score=17.44 Aligned_cols=17 Identities=12% Similarity=0.083 Sum_probs=13.2
Q ss_pred CCCHHHHHHHHHHHHhh
Q 033769 94 LKKPQDRADLIAYLKES 110 (112)
Q Consensus 94 ~l~~~ei~~l~ayl~sl 110 (112)
.++++++..|..|+..+
T Consensus 89 ~l~~e~~~~i~~~i~~l 105 (111)
T 1b0n_A 89 GVSKKQFREFLDYQKWR 105 (111)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 45688988888888765
No 173
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.16 E-value=60 Score=19.97 Aligned_cols=17 Identities=12% Similarity=0.204 Sum_probs=14.1
Q ss_pred CCCCHHHHHHHHHHHHh
Q 033769 93 GLKKPQDRADLIAYLKE 109 (112)
Q Consensus 93 ~~l~~~ei~~l~ayl~s 109 (112)
+.||++|++.|.++|.+
T Consensus 52 g~Lt~~ei~~i~~~i~~ 68 (148)
T 3j20_O 52 GYLTDEQVKKIEEILAD 68 (148)
T ss_dssp TBCCHHHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHHhc
Confidence 45689999999999854
No 174
>2hfg_R Tumor necrosis factor receptor superfamily member; FAB fragment, TNFRSF, antibody-receptor complex, CRD, immune; 2.61A {Homo sapiens}
Probab=20.91 E-value=15 Score=18.14 Aligned_cols=10 Identities=20% Similarity=0.680 Sum_probs=7.8
Q ss_pred hhCccccccc
Q 033769 21 TKCAQCHTVV 30 (112)
Q Consensus 21 ~~C~~CH~~~ 30 (112)
.+|.+||=..
T Consensus 27 R~CVaC~Ll~ 36 (51)
T 2hfg_R 27 RHCVACGLLR 36 (51)
T ss_dssp TEEEECEECC
T ss_pred hcceeeEEEe
Confidence 4799999654
No 175
>1p0t_A Tumor necrosis factor receptor superfamily member 13C; BAFF, BLys, stall, BAFF-R, BR-3, protein binding; 3.30A {Homo sapiens} PDB: 1osx_A
Probab=20.77 E-value=18 Score=18.66 Aligned_cols=10 Identities=20% Similarity=0.680 Sum_probs=7.9
Q ss_pred hhCccccccc
Q 033769 21 TKCAQCHTVV 30 (112)
Q Consensus 21 ~~C~~CH~~~ 30 (112)
.+|.+||=..
T Consensus 30 R~CVaC~Ll~ 39 (63)
T 1p0t_A 30 RHCVACGLLR 39 (63)
T ss_dssp TEEECGGGSC
T ss_pred hcceeeEEee
Confidence 5799999764
Done!