BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033770
         (112 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ZEE|A Chain A, X-Ray Crystal Structure Of Protein So4414 From Shewanella
           Oneidensis. Northeast Structural Genomics Consortium
           Target Sor52.
 pdb|1ZEE|B Chain B, X-Ray Crystal Structure Of Protein So4414 From Shewanella
           Oneidensis. Northeast Structural Genomics Consortium
           Target Sor52
          Length = 403

 Score = 28.5 bits (62), Expect = 0.90,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 15/78 (19%)

Query: 26  RARLVELGLELFHSLLGE-FEVVPIM-------EHYGCVVDLLGRAGLLSEANEFLWSAC 77
           RA + E+G EL H+L  E  E+V  +       E +    DLLG  GL         +AC
Sbjct: 36  RANVQEVGTELKHTLESEGRELVKALLDEGNTDEGFDSAFDLLGNVGLYX-------AAC 88

Query: 78  KIHGAVKLSHEVGKRLLE 95
           + H   + + E    LLE
Sbjct: 89  RRHEITEPTRETTSPLLE 106


>pdb|2NWB|A Chain A, Crystal Structure Of A Putative 2,3-Dioxygenase (So4414)
           From Shewanella Oneidensis In Complex With Ferric Heme.
           Northeast Structural Genomics Target Sor52.
 pdb|2NWB|B Chain B, Crystal Structure Of A Putative 2,3-Dioxygenase (So4414)
           From Shewanella Oneidensis In Complex With Ferric Heme.
           Northeast Structural Genomics Target Sor52
          Length = 400

 Score = 28.1 bits (61), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 15/78 (19%)

Query: 26  RARLVELGLELFHSLLGE-FEVVPIM-------EHYGCVVDLLGRAGLLSEANEFLWSAC 77
           RA + E+G EL H+L  E  E+V  +       E +    DLLG  GL         +AC
Sbjct: 36  RANVQEVGTELKHTLESEGRELVKALLDEGNTDEGFDSAFDLLGNVGL-------YMAAC 88

Query: 78  KIHGAVKLSHEVGKRLLE 95
           + H   + + E    LLE
Sbjct: 89  RRHEITEPTRETTSPLLE 106


>pdb|2O0M|A Chain A, The Crystal Structure Of The Putative Sorc Family
           Transcriptional Regulator From Enterococcus Faecalis
          Length = 345

 Score = 27.3 bits (59), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)

Query: 31  ELGLELFHSLLGE---FEVVPIMEHYGCVVDLLGRA 63
           +L  E ++SLL E    EV+ ++ H  CVV  +GRA
Sbjct: 211 QLSRETYNSLLQEPSIQEVLTLISHANCVVHSIGRA 246


>pdb|3C0B|A Chain A, Crystal Structure Of The Conserved Archaeal Protein
           Q6m145. Northeast Structural Genomics Consortium Target
           Mrr63
 pdb|3C0B|B Chain B, Crystal Structure Of The Conserved Archaeal Protein
           Q6m145. Northeast Structural Genomics Consortium Target
           Mrr63
 pdb|3C0B|C Chain C, Crystal Structure Of The Conserved Archaeal Protein
           Q6m145. Northeast Structural Genomics Consortium Target
           Mrr63
 pdb|3C0B|D Chain D, Crystal Structure Of The Conserved Archaeal Protein
           Q6m145. Northeast Structural Genomics Consortium Target
           Mrr63
 pdb|3CET|A Chain A, Crystal Structure Of The Pantheonate Kinase-Like Protein
           Q6m145 At The Resolution 1.8 A. Northeast Structural
           Genomics Consortium Target Mrr63
 pdb|3CET|B Chain B, Crystal Structure Of The Pantheonate Kinase-Like Protein
           Q6m145 At The Resolution 1.8 A. Northeast Structural
           Genomics Consortium Target Mrr63
          Length = 334

 Score = 25.8 bits (55), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 32  LGLELFHSLLGEFEVVPIMEHYGCVVDL 59
           LG  +    L +FEV+ + E YG  V L
Sbjct: 284 LGENILKDALADFEVISVAERYGKDVSL 311


>pdb|4EGC|A Chain A, Crystal Structure Of Mbp-fused Human Six1 Bound To Human
           Eya2 Eya Domain
          Length = 559

 Score = 25.8 bits (55), Expect = 7.0,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)

Query: 51  EHYGCVVDLLGRAGLLSEANEFLWS--AC 77
           E   CV ++L + G L     FLWS  AC
Sbjct: 382 EQVACVCEVLQQGGNLERLGRFLWSLPAC 410


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.139    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,123,603
Number of Sequences: 62578
Number of extensions: 105001
Number of successful extensions: 277
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 275
Number of HSP's gapped (non-prelim): 6
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)