Query 033770
Match_columns 112
No_of_seqs 122 out of 1537
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 06:05:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033770.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033770hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 99.9 5E-24 1.1E-28 160.9 10.6 112 1-112 413-539 (697)
2 PLN03077 Protein ECB2; Provisi 99.9 8.9E-24 1.9E-28 162.4 10.6 112 1-112 576-702 (857)
3 PLN03081 pentatricopeptide (PP 99.9 1.2E-22 2.7E-27 153.4 9.7 110 1-111 312-436 (697)
4 PLN03218 maturation of RBCL 1; 99.9 1.4E-21 3E-26 152.4 11.2 71 2-73 460-530 (1060)
5 PLN03218 maturation of RBCL 1; 99.9 2.3E-21 5E-26 151.1 10.9 94 1-95 636-747 (1060)
6 PLN03077 Protein ECB2; Provisi 99.8 1E-20 2.2E-25 145.6 11.2 108 1-110 275-398 (857)
7 PF13041 PPR_2: PPR repeat fam 99.8 2.2E-19 4.8E-24 93.6 6.0 50 12-62 1-50 (50)
8 PF12854 PPR_1: PPR repeat 99.5 6.4E-14 1.4E-18 67.2 4.0 34 8-41 1-34 (34)
9 PF12854 PPR_1: PPR repeat 99.3 1.5E-12 3.3E-17 62.4 3.9 30 44-73 1-30 (34)
10 TIGR00756 PPR pentatricopeptid 99.0 2.9E-10 6.2E-15 54.0 3.4 35 15-50 1-35 (35)
11 PF13041 PPR_2: PPR repeat fam 99.0 6.9E-10 1.5E-14 57.4 3.9 48 48-112 1-49 (50)
12 PF13812 PPR_3: Pentatricopept 99.0 1.1E-09 2.5E-14 51.8 3.6 34 14-48 1-34 (34)
13 PF01535 PPR: PPR repeat; Int 98.8 8.5E-09 1.9E-13 47.7 3.3 31 15-46 1-31 (31)
14 KOG4422 Uncharacterized conser 98.6 6.1E-07 1.3E-11 64.9 9.3 93 1-94 260-383 (625)
15 PRK11788 tetratricopeptide rep 98.5 1.9E-06 4.1E-11 61.1 9.5 86 15-101 215-316 (389)
16 PRK11788 tetratricopeptide rep 98.5 2.6E-06 5.7E-11 60.4 10.1 20 20-39 75-94 (389)
17 KOG4318 Bicoid mRNA stability 98.4 2.4E-07 5.2E-12 71.4 3.3 88 2-91 13-107 (1088)
18 TIGR02917 PEP_TPR_lipo putativ 98.3 9.6E-06 2.1E-10 61.9 10.8 57 15-73 568-624 (899)
19 TIGR02917 PEP_TPR_lipo putativ 98.3 1.7E-05 3.6E-10 60.6 10.7 96 12-109 531-643 (899)
20 PF01535 PPR: PPR repeat; Int 98.2 1.4E-06 3.1E-11 39.9 2.3 23 51-73 1-23 (31)
21 PRK15359 type III secretion sy 98.2 4.5E-05 9.8E-10 47.7 9.7 93 10-107 22-132 (144)
22 PF06239 ECSIT: Evolutionarily 98.2 1.1E-05 2.3E-10 53.7 6.6 71 2-73 75-162 (228)
23 PF08579 RPM2: Mitochondrial r 98.2 1.7E-05 3.8E-10 47.7 6.9 62 1-63 47-117 (120)
24 KOG4422 Uncharacterized conser 98.1 2.4E-05 5.3E-10 56.9 8.5 87 3-94 231-340 (625)
25 TIGR00756 PPR pentatricopeptid 98.1 3.5E-06 7.5E-11 39.4 2.5 23 51-73 1-23 (35)
26 TIGR02521 type_IV_pilW type IV 98.0 0.00018 4E-09 46.5 10.3 57 15-73 66-122 (234)
27 TIGR02521 type_IV_pilW type IV 98.0 0.00024 5.3E-09 45.9 10.3 90 13-102 98-204 (234)
28 TIGR02552 LcrH_SycD type III s 97.9 0.00028 6.1E-09 42.9 9.6 92 10-103 12-121 (135)
29 PF13812 PPR_3: Pentatricopept 97.9 1.4E-05 3.1E-10 37.3 2.8 23 51-73 2-24 (34)
30 PF13429 TPR_15: Tetratricopep 97.9 6.9E-05 1.5E-09 51.3 7.2 97 10-109 142-256 (280)
31 PF10037 MRP-S27: Mitochondria 97.9 4.8E-05 1E-09 55.4 6.1 57 16-73 105-161 (429)
32 cd00189 TPR Tetratricopeptide 97.7 0.00074 1.6E-08 36.9 8.7 80 17-98 3-99 (100)
33 PF13429 TPR_15: Tetratricopep 97.7 0.00019 4.2E-09 49.1 6.6 97 12-108 108-221 (280)
34 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0023 5E-08 37.6 10.4 89 16-104 4-113 (119)
35 TIGR00990 3a0801s09 mitochondr 97.6 0.001 2.3E-08 50.4 10.5 56 16-73 367-422 (615)
36 PRK10370 formate-dependent nit 97.6 0.0029 6.4E-08 41.6 11.3 94 11-107 70-184 (198)
37 TIGR00990 3a0801s09 mitochondr 97.5 0.0022 4.7E-08 48.8 10.8 93 13-108 330-440 (615)
38 PRK15174 Vi polysaccharide exp 97.5 0.002 4.2E-08 49.6 10.6 47 20-68 218-264 (656)
39 PRK14574 hmsH outer membrane p 97.5 0.0025 5.4E-08 50.2 10.7 105 3-107 316-456 (822)
40 PF12921 ATP13: Mitochondrial 97.4 0.0018 4E-08 39.7 7.6 61 13-73 1-75 (126)
41 PF12895 Apc3: Anaphase-promot 97.4 0.0013 2.8E-08 37.1 6.5 66 27-92 2-83 (84)
42 PLN03088 SGT1, suppressor of 97.4 0.0026 5.7E-08 45.5 9.3 83 23-107 11-110 (356)
43 PF09295 ChAPs: ChAPs (Chs5p-A 97.4 0.0022 4.7E-08 46.6 8.9 92 15-111 170-278 (395)
44 PF13432 TPR_16: Tetratricopep 97.4 0.00069 1.5E-08 36.2 4.8 60 22-101 5-65 (65)
45 KOG1126 DNA-binding cell divis 97.3 0.0011 2.5E-08 50.1 7.1 100 9-111 481-601 (638)
46 PRK09782 bacteriophage N4 rece 97.3 0.0054 1.2E-07 49.3 10.8 72 28-102 590-678 (987)
47 PRK15174 Vi polysaccharide exp 97.2 0.0049 1.1E-07 47.4 9.8 83 24-107 187-290 (656)
48 PRK12370 invasion protein regu 97.2 0.0075 1.6E-07 45.4 10.5 56 15-73 339-395 (553)
49 PRK09782 bacteriophage N4 rece 97.2 0.01 2.3E-07 47.7 11.3 91 9-102 604-712 (987)
50 PRK12370 invasion protein regu 97.1 0.0079 1.7E-07 45.3 10.0 95 11-108 368-482 (553)
51 PRK11189 lipoprotein NlpI; Pro 97.1 0.016 3.4E-07 40.4 10.7 82 17-101 67-166 (296)
52 PF14559 TPR_19: Tetratricopep 97.1 0.00025 5.4E-09 38.2 1.4 46 25-73 2-48 (68)
53 PF08579 RPM2: Mitochondrial r 97.1 0.004 8.8E-08 37.6 6.6 80 18-107 29-111 (120)
54 KOG3941 Intermediate in Toll s 97.1 0.0021 4.6E-08 44.8 5.7 66 2-68 95-176 (406)
55 PRK10049 pgaA outer membrane p 97.0 0.015 3.3E-07 45.4 10.7 86 16-103 361-463 (765)
56 PF05843 Suf: Suppressor of fo 97.0 0.0093 2E-07 41.3 8.6 44 28-73 50-93 (280)
57 PRK10049 pgaA outer membrane p 97.0 0.014 3.1E-07 45.7 10.4 94 12-107 47-156 (765)
58 PRK02603 photosystem I assembl 97.0 0.026 5.6E-07 36.0 10.1 87 13-100 34-153 (172)
59 PRK11447 cellulose synthase su 97.0 0.014 3.1E-07 47.6 10.5 91 13-103 302-421 (1157)
60 PF14559 TPR_19: Tetratricopep 96.9 0.0048 1E-07 33.0 5.3 47 62-108 3-66 (68)
61 PF06239 ECSIT: Evolutionarily 96.9 0.006 1.3E-07 40.9 6.3 98 9-111 42-148 (228)
62 COG4783 Putative Zn-dependent 96.8 0.0096 2.1E-07 43.9 7.8 83 26-111 318-418 (484)
63 PF10037 MRP-S27: Mitochondria 96.7 0.0064 1.4E-07 44.6 5.9 56 7-63 131-186 (429)
64 PRK11447 cellulose synthase su 96.7 0.04 8.7E-07 45.1 10.9 89 11-101 600-705 (1157)
65 PF12921 ATP13: Mitochondrial 96.6 0.012 2.7E-07 36.1 6.2 58 8-65 46-103 (126)
66 PRK14574 hmsH outer membrane p 96.6 0.017 3.7E-07 45.7 8.2 81 25-109 45-144 (822)
67 PRK15359 type III secretion sy 96.6 0.024 5.1E-07 35.3 7.4 56 52-107 26-98 (144)
68 PF13428 TPR_14: Tetratricopep 96.5 0.0036 7.9E-08 31.0 2.8 34 75-108 9-42 (44)
69 cd05804 StaR_like StaR_like; a 96.5 0.072 1.6E-06 37.4 10.4 79 18-98 118-217 (355)
70 PRK10370 formate-dependent nit 96.5 0.036 7.8E-07 36.4 8.2 80 28-109 53-152 (198)
71 KOG0553 TPR repeat-containing 96.5 0.021 4.6E-07 39.9 7.3 78 25-105 92-187 (304)
72 PF13432 TPR_16: Tetratricopep 96.5 0.02 4.4E-07 30.3 5.8 30 13-42 30-59 (65)
73 PF09976 TPR_21: Tetratricopep 96.4 0.052 1.1E-06 33.6 8.2 72 20-92 54-143 (145)
74 COG5010 TadD Flp pilus assembl 96.4 0.059 1.3E-06 36.9 8.9 78 16-95 102-196 (257)
75 PRK10803 tol-pal system protei 96.4 0.089 1.9E-06 36.3 9.9 86 14-102 143-252 (263)
76 PF13414 TPR_11: TPR repeat; P 96.4 0.021 4.5E-07 30.6 5.5 56 13-71 2-59 (69)
77 TIGR03302 OM_YfiO outer membra 96.3 0.11 2.3E-06 34.5 9.9 92 13-104 32-152 (235)
78 CHL00033 ycf3 photosystem I as 96.3 0.13 2.8E-06 32.5 10.4 59 14-73 35-95 (168)
79 PF13371 TPR_9: Tetratricopept 96.3 0.014 3.1E-07 31.6 4.7 62 22-103 3-65 (73)
80 PRK10747 putative protoheme IX 96.3 0.061 1.3E-06 39.0 8.9 87 11-102 260-363 (398)
81 PRK15179 Vi polysaccharide bio 96.3 0.072 1.6E-06 41.5 9.7 88 12-102 84-189 (694)
82 PRK11189 lipoprotein NlpI; Pro 96.2 0.21 4.6E-06 34.7 11.3 82 11-95 94-193 (296)
83 COG2956 Predicted N-acetylgluc 96.2 0.11 2.3E-06 37.1 9.4 55 19-73 74-130 (389)
84 PF09295 ChAPs: ChAPs (Chs5p-A 96.2 0.12 2.6E-06 37.7 10.1 89 2-96 192-297 (395)
85 TIGR02552 LcrH_SycD type III s 96.2 0.022 4.7E-07 34.4 5.5 62 49-110 16-94 (135)
86 COG2956 Predicted N-acetylgluc 96.1 0.023 4.9E-07 40.4 5.7 67 27-95 48-135 (389)
87 PF04733 Coatomer_E: Coatomer 96.1 0.066 1.4E-06 37.4 8.1 71 29-101 182-270 (290)
88 COG5010 TadD Flp pilus assembl 96.0 0.23 5E-06 34.1 10.3 95 9-105 61-172 (257)
89 PRK15363 pathogenicity island 96.0 0.021 4.5E-07 36.4 4.9 67 26-95 47-131 (157)
90 KOG4626 O-linked N-acetylgluco 96.0 0.052 1.1E-06 41.9 7.7 96 13-111 115-262 (966)
91 KOG1840 Kinesin light chain [C 96.0 0.075 1.6E-06 39.9 8.3 94 17-110 328-456 (508)
92 KOG1126 DNA-binding cell divis 95.9 0.015 3.2E-07 44.3 4.4 87 13-102 420-524 (638)
93 KOG4626 O-linked N-acetylgluco 95.8 0.098 2.1E-06 40.5 8.3 92 10-104 315-425 (966)
94 cd00189 TPR Tetratricopeptide 95.8 0.079 1.7E-06 28.4 6.2 59 13-73 33-91 (100)
95 PF12895 Apc3: Anaphase-promot 95.7 0.019 4.1E-07 32.2 3.5 58 13-73 24-81 (84)
96 PF03704 BTAD: Bacterial trans 95.7 0.085 1.8E-06 32.5 6.6 54 17-73 65-119 (146)
97 PF13424 TPR_12: Tetratricopep 95.6 0.058 1.3E-06 29.5 5.3 59 15-73 6-69 (78)
98 KOG3785 Uncharacterized conser 95.6 0.12 2.5E-06 37.6 7.7 79 20-100 399-494 (557)
99 PRK10747 putative protoheme IX 95.5 0.2 4.3E-06 36.3 8.9 87 17-105 232-332 (398)
100 KOG2076 RNA polymerase III tra 95.4 0.17 3.7E-06 40.1 8.7 66 46-111 410-493 (895)
101 KOG2076 RNA polymerase III tra 95.4 0.18 3.9E-06 40.0 8.8 75 23-100 149-240 (895)
102 PF05843 Suf: Suppressor of fo 95.4 0.36 7.7E-06 33.5 9.5 84 14-98 1-101 (280)
103 COG3063 PilF Tfp pilus assembl 95.4 0.39 8.6E-06 32.7 9.2 88 14-104 69-176 (250)
104 PRK15363 pathogenicity island 95.3 0.3 6.5E-06 31.2 8.1 58 49-106 34-108 (157)
105 PF13424 TPR_12: Tetratricopep 95.3 0.12 2.6E-06 28.2 5.8 46 50-95 5-74 (78)
106 PF04733 Coatomer_E: Coatomer 95.2 0.23 4.9E-06 34.7 8.2 28 75-102 209-236 (290)
107 KOG1173 Anaphase-promoting com 95.2 0.042 9.1E-07 41.5 4.6 101 8-108 407-530 (611)
108 PF02284 COX5A: Cytochrome c o 95.1 0.15 3.2E-06 30.3 6.0 41 32-73 28-68 (108)
109 KOG1129 TPR repeat-containing 94.9 0.35 7.7E-06 34.8 8.4 81 19-102 228-325 (478)
110 PF13414 TPR_11: TPR repeat; P 94.9 0.21 4.6E-06 26.5 6.0 50 49-98 2-69 (69)
111 KOG2002 TPR-containing nuclear 94.9 0.23 5.1E-06 39.8 8.1 100 12-112 268-387 (1018)
112 PF13371 TPR_9: Tetratricopept 94.9 0.13 2.8E-06 27.6 5.1 30 13-42 28-57 (73)
113 COG5107 RNA14 Pre-mRNA 3'-end 94.9 0.22 4.8E-06 37.2 7.5 58 14-73 397-455 (660)
114 PRK15179 Vi polysaccharide bio 94.8 0.62 1.3E-05 36.5 10.2 85 10-97 115-218 (694)
115 KOG1128 Uncharacterized conser 94.7 0.15 3.2E-06 39.7 6.4 94 15-111 425-563 (777)
116 PF12569 NARP1: NMDA receptor- 94.7 0.78 1.7E-05 34.8 10.1 82 11-95 189-290 (517)
117 PF09976 TPR_21: Tetratricopep 94.6 0.59 1.3E-05 28.8 8.5 79 14-93 12-111 (145)
118 TIGR00540 hemY_coli hemY prote 94.6 0.65 1.4E-05 33.7 9.5 27 75-101 271-297 (409)
119 KOG4318 Bicoid mRNA stability 94.6 0.042 9.2E-07 43.6 3.5 40 11-51 201-240 (1088)
120 KOG0548 Molecular co-chaperone 94.6 0.16 3.4E-06 38.2 6.2 82 23-106 11-109 (539)
121 cd00923 Cyt_c_Oxidase_Va Cytoc 94.4 0.26 5.6E-06 29.0 5.7 41 32-73 25-65 (103)
122 KOG0985 Vesicle coat protein c 94.4 0.26 5.6E-06 40.2 7.2 59 12-73 1131-1189(1666)
123 KOG2003 TPR repeat-containing 94.3 0.75 1.6E-05 34.6 9.2 92 8-102 585-695 (840)
124 KOG0547 Translocase of outer m 94.3 0.23 5.1E-06 37.3 6.6 92 13-106 427-542 (606)
125 TIGR02795 tol_pal_ybgF tol-pal 94.3 0.36 7.8E-06 28.0 6.4 50 52-101 4-73 (119)
126 cd05804 StaR_like StaR_like; a 94.2 0.46 1E-05 33.3 7.7 44 55-98 119-179 (355)
127 TIGR00540 hemY_coli hemY prote 94.1 0.39 8.4E-06 34.9 7.4 65 27-94 312-397 (409)
128 PF12688 TPR_5: Tetratrico pep 94.0 0.81 1.7E-05 27.8 8.1 50 23-73 10-61 (120)
129 PF04840 Vps16_C: Vps16, C-ter 93.9 0.73 1.6E-05 32.7 8.3 73 11-90 205-285 (319)
130 PLN03098 LPA1 LOW PSII ACCUMUL 93.9 0.47 1E-05 35.2 7.4 60 11-73 72-135 (453)
131 PF03704 BTAD: Bacterial trans 93.9 0.15 3.2E-06 31.4 4.3 44 11-54 93-140 (146)
132 COG3063 PilF Tfp pilus assembl 93.9 1.4 3E-05 30.1 9.0 76 17-95 38-131 (250)
133 PF12569 NARP1: NMDA receptor- 93.8 1.5 3.3E-05 33.3 10.2 56 46-101 188-262 (517)
134 KOG1840 Kinesin light chain [C 93.7 0.99 2.1E-05 34.1 9.0 82 14-95 367-478 (508)
135 KOG4570 Uncharacterized conser 93.7 0.2 4.4E-06 35.7 5.1 45 28-73 114-158 (418)
136 PF00637 Clathrin: Region in C 93.4 0.03 6.5E-07 34.5 0.6 74 20-94 13-97 (143)
137 COG4783 Putative Zn-dependent 93.2 2.2 4.8E-05 32.0 9.9 60 11-73 336-397 (484)
138 PRK15331 chaperone protein Sic 93.2 1.1 2.5E-05 28.8 7.5 69 25-95 48-133 (165)
139 KOG1070 rRNA processing protei 93.2 0.68 1.5E-05 38.9 7.8 85 14-100 1530-1633(1710)
140 KOG1155 Anaphase-promoting com 93.2 1.9 4.1E-05 32.4 9.4 63 9-73 426-489 (559)
141 KOG1914 mRNA cleavage and poly 93.1 1.2 2.5E-05 34.1 8.3 57 15-73 367-424 (656)
142 PRK02603 photosystem I assembl 93.0 0.47 1E-05 30.1 5.7 59 49-107 34-112 (172)
143 CHL00033 ycf3 photosystem I as 92.8 0.59 1.3E-05 29.5 5.9 60 49-108 34-113 (168)
144 PRK14720 transcript cleavage f 92.7 2.1 4.6E-05 34.7 9.8 88 15-105 117-207 (906)
145 PLN03088 SGT1, suppressor of 92.7 1.3 2.9E-05 31.7 8.1 58 13-73 35-93 (356)
146 PRK10803 tol-pal system protei 92.5 0.7 1.5E-05 31.9 6.3 55 50-104 143-217 (263)
147 KOG0543 FKBP-type peptidyl-pro 92.5 0.81 1.8E-05 33.4 6.7 83 23-105 217-329 (397)
148 PF07719 TPR_2: Tetratricopept 92.4 0.27 6E-06 22.1 3.1 26 75-100 9-34 (34)
149 PF13176 TPR_7: Tetratricopept 92.4 0.28 6E-06 22.9 3.1 20 53-72 2-21 (36)
150 PF10602 RPN7: 26S proteasome 92.4 2 4.3E-05 27.8 8.2 80 14-94 36-140 (177)
151 PRK10153 DNA-binding transcrip 92.4 1.9 4.2E-05 32.7 8.9 74 30-103 400-489 (517)
152 KOG2003 TPR repeat-containing 92.2 1.1 2.5E-05 33.7 7.3 81 26-111 502-602 (840)
153 PF10300 DUF3808: Protein of u 92.1 1.3 2.9E-05 33.0 7.7 90 15-107 230-345 (468)
154 KOG1125 TPR repeat-containing 92.0 0.73 1.6E-05 35.1 6.2 69 24-95 440-526 (579)
155 COG3071 HemY Uncharacterized e 92.0 1.9 4E-05 31.6 8.0 92 14-108 229-368 (400)
156 PF13512 TPR_18: Tetratricopep 91.9 0.56 1.2E-05 29.5 4.8 61 12-73 9-70 (142)
157 KOG3081 Vesicle coat complex C 91.9 3.2 6.9E-05 29.1 8.8 59 13-73 168-230 (299)
158 TIGR03302 OM_YfiO outer membra 91.7 1.3 2.8E-05 29.3 6.7 54 49-102 32-105 (235)
159 KOG2002 TPR-containing nuclear 91.6 0.33 7.1E-06 39.0 4.3 88 13-102 645-751 (1018)
160 PRK14720 transcript cleavage f 91.6 2 4.3E-05 34.8 8.5 98 9-108 25-157 (906)
161 PF13176 TPR_7: Tetratricopept 91.5 0.46 9.9E-06 22.2 3.3 26 16-41 1-26 (36)
162 PF13525 YfiO: Outer membrane 91.5 2.2 4.8E-05 28.0 7.6 87 15-102 7-125 (203)
163 KOG2053 Mitochondrial inherita 91.4 2.3 5E-05 34.2 8.5 86 16-103 43-146 (932)
164 KOG2796 Uncharacterized conser 91.3 3.7 8E-05 28.9 8.6 99 11-110 209-329 (366)
165 KOG1156 N-terminal acetyltrans 91.2 2.4 5.1E-05 33.0 8.2 60 11-73 366-428 (700)
166 KOG1173 Anaphase-promoting com 91.0 3.4 7.3E-05 31.7 8.7 81 13-95 454-534 (611)
167 KOG0495 HAT repeat protein [RN 90.9 2.8 6E-05 33.0 8.3 59 13-73 583-641 (913)
168 smart00299 CLH Clathrin heavy 90.6 2.6 5.6E-05 25.7 8.1 54 17-73 10-63 (140)
169 PF04840 Vps16_C: Vps16, C-ter 90.4 3.1 6.7E-05 29.6 7.9 75 14-93 177-263 (319)
170 KOG3616 Selective LIM binding 90.2 1.7 3.8E-05 34.8 6.9 51 19-72 796-846 (1636)
171 KOG4555 TPR repeat-containing 90.0 2.8 6E-05 26.5 6.5 73 23-97 52-145 (175)
172 KOG0495 HAT repeat protein [RN 89.9 5 0.00011 31.7 9.0 96 12-110 616-728 (913)
173 KOG1127 TPR repeat-containing 89.8 2.5 5.3E-05 34.7 7.5 82 16-100 494-629 (1238)
174 PF14938 SNAP: Soluble NSF att 89.8 3.9 8.5E-05 28.2 7.9 21 75-95 163-183 (282)
175 COG3071 HemY Uncharacterized e 89.7 3.2 6.9E-05 30.4 7.5 69 24-94 304-388 (400)
176 PRK15331 chaperone protein Sic 89.7 1.1 2.4E-05 28.9 4.7 47 58-104 45-108 (165)
177 PF00515 TPR_1: Tetratricopept 89.6 0.49 1.1E-05 21.4 2.4 25 75-99 9-33 (34)
178 PRK10153 DNA-binding transcrip 89.4 3.3 7.2E-05 31.4 7.8 58 13-73 419-476 (517)
179 KOG3616 Selective LIM binding 89.2 1.2 2.6E-05 35.6 5.4 68 22-92 740-816 (1636)
180 PF12688 TPR_5: Tetratrico pep 89.1 3.5 7.6E-05 25.0 7.9 69 2-73 24-98 (120)
181 PF13174 TPR_6: Tetratricopept 88.9 0.69 1.5E-05 20.5 2.6 25 75-99 8-32 (33)
182 KOG2376 Signal recognition par 88.7 5.5 0.00012 30.8 8.4 89 16-107 378-498 (652)
183 PF04184 ST7: ST7 protein; In 88.7 6.4 0.00014 29.9 8.6 49 25-73 270-318 (539)
184 PF13431 TPR_17: Tetratricopep 88.6 0.54 1.2E-05 21.8 2.1 22 49-70 12-33 (34)
185 KOG1129 TPR repeat-containing 88.5 5.1 0.00011 29.1 7.7 91 11-104 253-361 (478)
186 PF14938 SNAP: Soluble NSF att 88.3 6.5 0.00014 27.1 8.5 83 17-99 117-228 (282)
187 PF13374 TPR_10: Tetratricopep 88.1 1.6 3.4E-05 20.3 3.8 27 15-41 3-29 (42)
188 COG3629 DnrI DNA-binding trans 87.8 5 0.00011 28.1 7.3 55 16-73 155-210 (280)
189 PF13929 mRNA_stabil: mRNA sta 87.7 4.6 0.0001 28.4 7.0 66 8-73 196-261 (292)
190 PRK10866 outer membrane biogen 87.7 2 4.3E-05 29.2 5.2 44 59-102 41-104 (243)
191 KOG3060 Uncharacterized conser 87.6 4.9 0.00011 28.0 6.9 34 75-108 162-195 (289)
192 PF13181 TPR_8: Tetratricopept 87.4 0.86 1.9E-05 20.4 2.5 25 75-99 9-33 (34)
193 KOG1156 N-terminal acetyltrans 87.1 8.5 0.00018 30.2 8.6 97 13-109 142-261 (700)
194 KOG1155 Anaphase-promoting com 87.0 2.8 6E-05 31.6 5.9 82 23-107 339-438 (559)
195 KOG0547 Translocase of outer m 86.8 3.7 8E-05 31.2 6.5 50 50-99 428-494 (606)
196 KOG4162 Predicted calmodulin-b 86.8 6.4 0.00014 31.3 7.9 74 26-102 696-789 (799)
197 PF11846 DUF3366: Domain of un 86.5 5 0.00011 26.0 6.5 51 23-73 117-167 (193)
198 KOG4570 Uncharacterized conser 86.0 1.3 2.9E-05 31.8 3.7 37 6-42 127-163 (418)
199 KOG1915 Cell cycle control pro 85.9 6 0.00013 30.2 7.1 60 11-73 171-230 (677)
200 KOG4162 Predicted calmodulin-b 85.7 2.8 6E-05 33.2 5.6 74 37-111 311-403 (799)
201 cd00923 Cyt_c_Oxidase_Va Cytoc 85.5 4.4 9.5E-05 23.9 5.1 53 5-59 33-85 (103)
202 PRK10564 maltose regulon perip 85.5 2.1 4.6E-05 30.2 4.5 44 10-54 252-296 (303)
203 COG1729 Uncharacterized protei 84.8 3.4 7.3E-05 28.7 5.1 86 14-102 142-250 (262)
204 PF13762 MNE1: Mitochondrial s 84.7 4.7 0.0001 25.4 5.4 58 12-71 77-135 (145)
205 KOG1125 TPR repeat-containing 84.3 17 0.00037 28.1 9.0 78 23-100 403-497 (579)
206 KOG1915 Cell cycle control pro 84.3 16 0.00034 28.0 8.6 72 21-95 148-235 (677)
207 COG1729 Uncharacterized protei 84.3 12 0.00025 26.1 8.5 52 50-102 142-213 (262)
208 PF04910 Tcf25: Transcriptiona 84.1 13 0.00028 26.9 8.2 37 75-111 111-148 (360)
209 PLN03098 LPA1 LOW PSII ACCUMUL 84.0 6.5 0.00014 29.4 6.6 48 49-96 74-141 (453)
210 KOG2280 Vacuolar assembly/sort 83.8 7.1 0.00015 31.1 7.0 73 11-90 712-793 (829)
211 PF13428 TPR_14: Tetratricopep 83.6 3.7 7.9E-05 19.8 4.8 27 16-42 3-29 (44)
212 KOG2047 mRNA splicing factor [ 83.1 15 0.00032 29.1 8.3 21 75-95 256-276 (835)
213 PF13525 YfiO: Outer membrane 83.0 4.7 0.0001 26.4 5.2 44 59-102 14-77 (203)
214 KOG3941 Intermediate in Toll s 82.9 3.8 8.1E-05 29.2 4.8 42 1-42 145-187 (406)
215 KOG1070 rRNA processing protei 82.6 15 0.00032 31.6 8.5 83 13-95 1457-1558(1710)
216 KOG3081 Vesicle coat complex C 82.3 13 0.00027 26.2 7.1 74 26-103 149-243 (299)
217 COG3947 Response regulator con 82.2 4 8.7E-05 29.0 4.7 37 75-111 287-323 (361)
218 PF14853 Fis1_TPR_C: Fis1 C-te 81.8 2.5 5.4E-05 21.9 2.8 28 75-102 9-36 (53)
219 PF10579 Rapsyn_N: Rapsyn N-te 81.8 6.3 0.00014 22.3 4.6 51 21-72 14-65 (80)
220 KOG1128 Uncharacterized conser 81.6 7.4 0.00016 30.8 6.3 63 46-109 394-465 (777)
221 PF09613 HrpB1_HrpK: Bacterial 81.3 7.5 0.00016 25.0 5.4 56 15-73 8-67 (160)
222 PF13281 DUF4071: Domain of un 81.0 19 0.00042 26.3 8.2 33 27-60 195-227 (374)
223 KOG4077 Cytochrome c oxidase, 80.9 10 0.00022 23.7 5.6 40 33-73 68-107 (149)
224 PF13512 TPR_18: Tetratricopep 80.8 12 0.00025 23.6 10.2 28 75-102 55-82 (142)
225 PF07721 TPR_4: Tetratricopept 80.1 3.7 8E-05 17.5 3.0 18 55-72 6-23 (26)
226 PF11848 DUF3368: Domain of un 79.9 6 0.00013 19.8 4.4 34 24-58 12-45 (48)
227 PF02284 COX5A: Cytochrome c o 79.8 11 0.00023 22.6 7.1 53 5-59 36-88 (108)
228 PLN02789 farnesyltranstransfer 79.5 20 0.00043 25.5 9.8 80 24-105 81-180 (320)
229 KOG1538 Uncharacterized conser 79.0 12 0.00027 29.7 6.8 33 3-38 624-656 (1081)
230 TIGR02561 HrpB1_HrpK type III 78.4 15 0.00032 23.5 8.7 65 26-95 22-121 (153)
231 KOG0548 Molecular co-chaperone 77.6 23 0.00049 27.2 7.6 76 23-100 367-459 (539)
232 KOG3785 Uncharacterized conser 76.9 18 0.00038 26.8 6.7 71 19-91 364-452 (557)
233 PF10300 DUF3808: Protein of u 76.8 17 0.00036 27.3 6.9 85 11-95 263-375 (468)
234 COG3629 DnrI DNA-binding trans 76.8 14 0.00029 26.0 6.0 46 50-95 153-215 (280)
235 PF09454 Vps23_core: Vps23 cor 76.2 10 0.00022 20.5 4.4 51 10-62 4-54 (65)
236 PF00637 Clathrin: Region in C 75.8 15 0.00033 22.2 6.3 64 2-73 30-93 (143)
237 smart00386 HAT HAT (Half-A-TPR 75.3 3.4 7.4E-05 17.8 2.0 25 81-105 1-25 (33)
238 KOG1174 Anaphase-promoting com 75.3 22 0.00048 26.8 6.9 32 10-41 228-259 (564)
239 COG5107 RNA14 Pre-mRNA 3'-end 75.2 35 0.00075 26.1 8.0 94 1-98 419-533 (660)
240 KOG4555 TPR repeat-containing 74.3 13 0.00027 23.6 4.8 39 59-97 52-107 (175)
241 KOG1914 mRNA cleavage and poly 74.1 40 0.00086 26.3 9.4 60 11-73 17-76 (656)
242 PF13170 DUF4003: Protein of u 73.5 13 0.00028 26.3 5.3 65 2-68 85-157 (297)
243 COG4235 Cytochrome c biogenesi 73.3 18 0.00039 25.5 5.9 86 13-100 155-260 (287)
244 KOG2223 Uncharacterized conser 73.1 8.7 0.00019 28.9 4.4 46 35-82 460-505 (586)
245 PF13170 DUF4003: Protein of u 72.7 24 0.00052 24.9 6.5 42 13-55 59-102 (297)
246 KOG2376 Signal recognition par 72.6 34 0.00074 26.8 7.5 21 75-95 118-138 (652)
247 smart00028 TPR Tetratricopepti 72.5 5.9 0.00013 16.0 2.8 23 76-98 10-32 (34)
248 PF14689 SPOB_a: Sensor_kinase 72.4 6.2 0.00013 20.9 2.8 25 18-42 27-51 (62)
249 KOG1127 TPR repeat-containing 72.1 21 0.00047 29.7 6.6 65 27-94 575-657 (1238)
250 PF12968 DUF3856: Domain of Un 72.0 21 0.00045 22.2 5.9 46 49-94 54-127 (144)
251 PF11663 Toxin_YhaV: Toxin wit 71.7 3.7 7.9E-05 25.7 2.0 31 27-60 108-138 (140)
252 PLN02789 farnesyltranstransfer 71.2 35 0.00075 24.3 9.8 96 13-110 105-226 (320)
253 PF11846 DUF3366: Domain of un 70.7 9.7 0.00021 24.6 4.0 34 9-42 139-172 (193)
254 KOG2047 mRNA splicing factor [ 70.7 35 0.00076 27.2 7.3 44 15-61 249-292 (835)
255 PF08311 Mad3_BUB1_I: Mad3/BUB 69.5 23 0.00049 21.6 5.3 18 75-92 107-124 (126)
256 KOG1147 Glutamyl-tRNA syntheta 69.2 4.9 0.00011 30.9 2.5 24 2-25 256-284 (712)
257 PF14669 Asp_Glu_race_2: Putat 68.5 23 0.00051 23.8 5.3 54 19-73 137-204 (233)
258 PF13281 DUF4071: Domain of un 68.4 23 0.0005 25.9 5.8 53 59-111 150-227 (374)
259 KOG2396 HAT (Half-A-TPR) repea 67.8 37 0.00081 26.1 6.8 62 11-73 102-163 (568)
260 PRK11639 zinc uptake transcrip 66.8 19 0.00042 23.0 4.7 62 5-68 17-78 (169)
261 COG3898 Uncharacterized membra 66.6 20 0.00043 26.8 5.1 64 10-73 114-211 (531)
262 COG4105 ComL DNA uptake lipopr 66.5 17 0.00037 25.2 4.6 68 16-101 37-105 (254)
263 KOG3617 WD40 and TPR repeat-co 65.8 30 0.00064 28.6 6.2 31 12-42 755-785 (1416)
264 KOG3617 WD40 and TPR repeat-co 65.6 30 0.00066 28.5 6.2 58 25-92 811-883 (1416)
265 PF04053 Coatomer_WDAD: Coatom 65.6 29 0.00062 26.0 5.9 25 49-73 346-370 (443)
266 PF09613 HrpB1_HrpK: Bacterial 64.6 35 0.00076 21.9 8.8 64 24-95 54-121 (160)
267 PF07035 Mic1: Colon cancer-as 64.1 30 0.00065 22.4 5.1 87 3-94 18-116 (167)
268 KOG1174 Anaphase-promoting com 64.0 62 0.0013 24.6 8.7 83 10-95 433-516 (564)
269 PF05664 DUF810: Protein of un 63.5 35 0.00077 27.1 6.3 60 8-67 211-280 (677)
270 KOG2422 Uncharacterized conser 62.8 29 0.00062 27.1 5.5 38 75-112 350-388 (665)
271 COG2976 Uncharacterized protei 62.4 45 0.00097 22.4 8.1 75 21-99 96-191 (207)
272 COG4235 Cytochrome c biogenesi 61.9 54 0.0012 23.2 9.8 60 49-108 155-234 (287)
273 PF07035 Mic1: Colon cancer-as 61.2 42 0.00091 21.7 10.0 21 53-73 92-112 (167)
274 PRK09462 fur ferric uptake reg 61.2 37 0.0008 21.1 5.5 63 4-68 7-70 (148)
275 TIGR02561 HrpB1_HrpK type III 61.1 38 0.00082 21.6 5.1 39 61-99 21-76 (153)
276 PRK10564 maltose regulon perip 60.4 16 0.00035 26.0 3.6 29 45-73 251-280 (303)
277 KOG1538 Uncharacterized conser 60.2 13 0.00029 29.6 3.4 41 55-95 778-845 (1081)
278 KOG4648 Uncharacterized conser 59.7 31 0.00068 25.5 5.0 75 23-100 106-198 (536)
279 PF04090 RNA_pol_I_TF: RNA pol 59.6 50 0.0011 22.0 8.1 58 15-73 42-99 (199)
280 PF11207 DUF2989: Protein of u 59.5 51 0.0011 22.1 7.1 58 13-70 139-198 (203)
281 KOG0624 dsRNA-activated protei 59.4 71 0.0015 23.7 8.9 80 19-101 160-257 (504)
282 TIGR03504 FimV_Cterm FimV C-te 58.8 21 0.00046 17.6 3.6 23 20-42 5-27 (44)
283 COG3898 Uncharacterized membra 58.4 71 0.0015 24.1 6.7 68 26-95 96-216 (531)
284 PF02184 HAT: HAT (Half-A-TPR) 58.2 16 0.00036 16.8 2.3 24 29-55 2-25 (32)
285 PF10366 Vps39_1: Vacuolar sor 57.2 15 0.00033 21.8 2.8 22 52-73 41-62 (108)
286 COG5210 GTPase-activating prot 57.0 35 0.00077 25.7 5.2 53 2-55 365-417 (496)
287 PF14518 Haem_oxygenas_2: Iron 56.6 36 0.00079 19.5 4.5 14 51-64 79-92 (106)
288 PF09205 DUF1955: Domain of un 56.5 49 0.0011 21.0 7.0 57 15-73 87-143 (161)
289 smart00299 CLH Clathrin heavy 55.6 44 0.00094 20.1 8.2 81 3-92 31-121 (140)
290 PF11817 Foie-gras_1: Foie gra 55.5 27 0.00058 23.7 4.1 24 50-73 178-201 (247)
291 COG4455 ImpE Protein of avirul 55.3 47 0.001 22.9 5.0 54 17-73 4-58 (273)
292 PF10602 RPN7: 26S proteasome 54.5 56 0.0012 21.1 5.5 47 49-95 35-101 (177)
293 PRK15180 Vi polysaccharide bio 54.4 1E+02 0.0022 24.0 7.2 85 11-99 322-423 (831)
294 KOG4077 Cytochrome c oxidase, 53.5 54 0.0012 20.6 5.2 20 75-94 92-111 (149)
295 KOG1920 IkappaB kinase complex 53.4 75 0.0016 27.1 6.6 71 20-92 971-1051(1265)
296 PF07304 SRA1: Steroid recepto 52.9 22 0.00047 22.7 3.1 45 29-73 69-113 (157)
297 KOG4279 Serine/threonine prote 52.4 17 0.00036 29.5 2.9 65 26-101 255-321 (1226)
298 KOG2053 Mitochondrial inherita 50.5 1.4E+02 0.0031 24.7 7.6 72 24-99 19-109 (932)
299 PF04124 Dor1: Dor1-like famil 50.3 29 0.00063 24.8 3.7 24 19-42 111-134 (338)
300 KOG0989 Replication factor C, 49.7 98 0.0021 22.4 7.5 49 7-58 203-251 (346)
301 cd07153 Fur_like Ferric uptake 49.3 35 0.00076 19.9 3.5 48 20-68 6-53 (116)
302 PF07443 HARP: HepA-related pr 48.7 2.9 6.3E-05 21.9 -1.1 26 1-26 14-39 (55)
303 PRK04841 transcriptional regul 48.5 1.4E+02 0.0031 24.0 9.0 56 18-73 495-554 (903)
304 PF10255 Paf67: RNA polymerase 48.1 1.1E+02 0.0025 22.7 7.6 44 51-94 123-191 (404)
305 TIGR02508 type_III_yscG type I 48.0 21 0.00045 21.4 2.2 34 20-58 45-78 (115)
306 PF07079 DUF1347: Protein of u 47.1 1.3E+02 0.0028 23.1 8.7 78 15-95 47-156 (549)
307 KOG2610 Uncharacterized conser 46.1 1.2E+02 0.0026 22.5 7.6 62 10-73 133-198 (491)
308 KOG0991 Replication factor C, 46.0 77 0.0017 22.3 5.0 37 11-49 236-272 (333)
309 PRK04841 transcriptional regul 45.4 1.6E+02 0.0035 23.7 9.2 72 23-95 461-559 (903)
310 PRK10941 hypothetical protein; 44.8 1.1E+02 0.0023 21.4 5.9 49 55-103 186-251 (269)
311 TIGR02328 conserved hypothetic 44.7 13 0.00029 22.5 1.1 15 1-15 57-71 (120)
312 cd00280 TRFH Telomeric Repeat 44.2 27 0.00059 23.2 2.5 44 30-73 85-134 (200)
313 smart00777 Mad3_BUB1_I Mad3/BU 43.7 62 0.0013 19.8 4.0 17 75-91 107-123 (125)
314 smart00164 TBC Domain in Tre-2 43.7 69 0.0015 20.4 4.5 39 34-72 151-189 (199)
315 COG3947 Response regulator con 43.6 1.2E+02 0.0025 22.0 5.7 54 16-72 281-335 (361)
316 COG0735 Fur Fe2+/Zn2+ uptake r 43.5 80 0.0017 19.7 5.1 63 4-68 11-73 (145)
317 PF07079 DUF1347: Protein of u 43.5 50 0.0011 25.2 4.0 53 13-66 127-183 (549)
318 KOG2796 Uncharacterized conser 43.4 1.2E+02 0.0026 21.7 8.1 84 18-102 181-287 (366)
319 KOG4567 GTPase-activating prot 43.4 94 0.002 22.6 5.2 41 2-42 266-306 (370)
320 PF11817 Foie-gras_1: Foie gra 42.3 1.1E+02 0.0023 20.8 7.6 37 58-94 166-205 (247)
321 KOG0818 GTPase-activating prot 42.3 88 0.0019 24.2 5.2 77 16-94 132-224 (669)
322 KOG2581 26S proteasome regulat 42.2 88 0.0019 23.6 5.1 74 26-99 181-279 (493)
323 PF02607 B12-binding_2: B12 bi 42.0 28 0.00061 18.8 2.2 46 26-72 13-58 (79)
324 COG2405 Predicted nucleic acid 41.5 58 0.0013 20.7 3.6 39 18-58 114-152 (157)
325 TIGR03236 dnd_assoc_1 dnd syst 41.0 34 0.00074 25.0 2.9 49 19-68 300-349 (363)
326 KOG2114 Vacuolar assembly/sort 40.2 2E+02 0.0043 23.8 7.0 44 28-73 411-454 (933)
327 PF14840 DNA_pol3_delt_C: Proc 40.0 37 0.0008 20.7 2.6 27 27-54 10-36 (125)
328 COG5108 RPO41 Mitochondrial DN 39.6 90 0.0019 25.3 5.0 49 19-67 33-82 (1117)
329 KOG0276 Vesicle coat complex C 39.4 2E+02 0.0043 23.1 7.1 41 26-73 649-689 (794)
330 PF13929 mRNA_stabil: mRNA sta 39.0 1.4E+02 0.0031 21.2 8.8 81 11-91 161-262 (292)
331 cd00280 TRFH Telomeric Repeat 38.9 1E+02 0.0022 20.6 4.5 43 19-65 116-158 (200)
332 smart00804 TAP_C C-terminal do 38.7 36 0.00078 18.2 2.1 25 26-50 37-61 (63)
333 PF01475 FUR: Ferric uptake re 38.4 36 0.00078 20.1 2.4 49 19-68 12-60 (120)
334 PF04124 Dor1: Dor1-like famil 38.4 1.1E+02 0.0023 21.9 5.1 21 53-73 109-129 (338)
335 KOG2659 LisH motif-containing 38.2 1.3E+02 0.0028 20.6 8.8 62 9-73 21-87 (228)
336 KOG2610 Uncharacterized conser 38.0 1.2E+02 0.0026 22.5 5.2 73 28-102 117-210 (491)
337 COG4105 ComL DNA uptake lipopr 37.6 1.4E+02 0.0031 20.8 10.9 49 13-62 70-118 (254)
338 KOG2280 Vacuolar assembly/sort 36.8 2E+02 0.0043 23.5 6.5 81 9-94 679-771 (829)
339 COG5191 Uncharacterized conser 36.5 58 0.0012 23.8 3.4 60 45-104 102-179 (435)
340 KOG0307 Vesicle coat complex C 36.3 60 0.0013 27.2 3.8 40 2-41 985-1024(1049)
341 PF00566 RabGAP-TBC: Rab-GTPas 36.2 54 0.0012 21.0 3.1 36 36-72 151-186 (214)
342 PF14044 NETI: NETI protein 36.1 26 0.00056 18.5 1.2 11 2-12 14-24 (57)
343 KOG1130 Predicted G-alpha GTPa 36.0 77 0.0017 24.1 4.1 48 24-73 27-78 (639)
344 COG4455 ImpE Protein of avirul 35.7 1.5E+02 0.0033 20.6 5.1 49 52-100 3-68 (273)
345 CHL00165 ftrB ferredoxin thior 35.4 64 0.0014 19.6 3.0 38 28-65 11-50 (116)
346 KOG0624 dsRNA-activated protei 35.2 1.9E+02 0.0041 21.6 6.4 77 24-100 116-222 (504)
347 KOG3060 Uncharacterized conser 34.7 1.7E+02 0.0036 20.7 9.1 99 10-111 47-164 (289)
348 KOG2041 WD40 repeat protein [G 34.2 2.7E+02 0.0058 23.0 7.8 59 15-73 810-875 (1189)
349 KOG0553 TPR repeat-containing 34.1 1.8E+02 0.0038 20.9 6.2 58 13-73 114-172 (304)
350 KOG3164 Uncharacterized protei 33.4 35 0.00076 23.2 1.9 66 38-105 47-116 (236)
351 PF10963 DUF2765: Protein of u 33.2 85 0.0018 17.9 3.1 30 10-39 12-41 (83)
352 PF04762 IKI3: IKI3 family; I 33.0 1.7E+02 0.0038 24.3 5.9 27 16-42 814-842 (928)
353 PRK10292 hypothetical protein; 32.5 89 0.0019 17.0 3.1 19 4-22 24-42 (69)
354 KOG4334 Uncharacterized conser 32.2 45 0.00098 25.6 2.4 34 29-63 540-573 (650)
355 cd08811 CARD_IPS1 Caspase acti 32.0 53 0.0012 18.8 2.2 40 26-71 44-83 (84)
356 PF12862 Apc5: Anaphase-promot 31.9 1E+02 0.0022 17.4 5.1 48 25-73 9-64 (94)
357 cd06182 CYPOR_like NADPH cytoc 31.9 80 0.0017 21.7 3.5 37 29-66 226-262 (267)
358 KOG4340 Uncharacterized conser 31.9 2.1E+02 0.0045 21.0 7.1 83 9-94 5-105 (459)
359 cd08320 Pyrin_NALPs Pyrin deat 31.2 51 0.0011 18.7 2.1 26 17-42 48-73 (86)
360 PF12583 TPPII_N: Tripeptidyl 31.2 80 0.0017 19.8 3.0 25 78-102 87-111 (139)
361 KOG1258 mRNA processing protei 31.0 2.7E+02 0.0057 22.0 8.7 93 11-108 365-482 (577)
362 KOG2808 U5 snRNP-associated RN 30.9 99 0.0021 22.3 3.8 48 1-50 230-277 (341)
363 COG2178 Predicted RNA-binding 30.4 1.7E+02 0.0037 19.6 6.3 83 13-95 28-149 (204)
364 PF02840 Prp18: Prp18 domain; 30.3 99 0.0022 19.5 3.4 40 33-73 43-82 (144)
365 PRK10941 hypothetical protein; 29.9 71 0.0015 22.3 3.0 28 75-102 189-216 (269)
366 KOG0985 Vesicle coat protein c 29.9 3.8E+02 0.0081 23.4 7.9 51 16-73 1106-1156(1666)
367 PF10363 DUF2435: Protein of u 28.9 1.2E+02 0.0026 17.4 4.1 37 28-68 39-75 (92)
368 PF00627 UBA: UBA/TS-N domain; 28.8 71 0.0015 14.6 3.3 30 37-72 6-36 (37)
369 COG4339 Uncharacterized protei 28.3 1.8E+02 0.0039 19.1 4.5 25 6-30 14-38 (208)
370 KOG4340 Uncharacterized conser 28.1 2.4E+02 0.0053 20.6 8.4 27 15-42 180-206 (459)
371 PF11491 DUF3213: Protein of u 28.0 4.4 9.6E-05 23.1 -2.6 23 44-66 18-40 (88)
372 COG1747 Uncharacterized N-term 27.8 3.1E+02 0.0067 21.7 7.9 58 12-73 97-154 (711)
373 PF05944 Phage_term_smal: Phag 27.7 1.6E+02 0.0034 18.3 4.5 27 19-46 53-79 (132)
374 PF03943 TAP_C: TAP C-terminal 27.6 26 0.00056 17.8 0.4 24 26-49 25-48 (51)
375 KOG2536 MAM33, mitochondrial m 27.3 1.1E+02 0.0024 21.4 3.4 32 7-41 227-258 (263)
376 smart00165 UBA Ubiquitin assoc 27.3 74 0.0016 14.4 3.7 30 37-72 5-35 (37)
377 PF06552 TOM20_plant: Plant sp 27.2 1.7E+02 0.0038 19.3 4.2 20 83-102 96-115 (186)
378 KOG3364 Membrane protein invol 26.8 1.7E+02 0.0037 18.6 3.9 71 20-92 38-113 (149)
379 PF08542 Rep_fac_C: Replicatio 26.7 1.2E+02 0.0026 16.6 6.1 56 13-72 4-59 (89)
380 COG4003 Uncharacterized protei 26.6 1.2E+02 0.0026 17.5 2.9 24 19-42 36-59 (98)
381 PF02758 PYRIN: PAAD/DAPIN/Pyr 26.4 54 0.0012 18.3 1.6 23 19-41 51-73 (83)
382 COG4976 Predicted methyltransf 26.4 1.6E+02 0.0034 20.7 4.0 23 78-100 40-62 (287)
383 PF03735 ENT: ENT domain; Int 26.0 1.1E+02 0.0024 16.9 2.8 32 15-46 11-43 (73)
384 smart00544 MA3 Domain in DAP-5 25.9 1.4E+02 0.0031 17.2 7.9 45 17-64 5-49 (113)
385 PF08967 DUF1884: Domain of un 25.3 25 0.00055 20.0 0.1 16 3-18 19-34 (85)
386 KOG0550 Molecular chaperone (D 25.3 3.1E+02 0.0067 20.9 6.4 48 26-73 261-310 (486)
387 KOG1920 IkappaB kinase complex 25.2 1.1E+02 0.0023 26.3 3.5 28 60-91 962-989 (1265)
388 PRK02287 hypothetical protein; 24.9 2.1E+02 0.0045 18.7 5.9 44 51-94 108-167 (171)
389 KOG0376 Serine-threonine phosp 24.3 1.7E+02 0.0036 22.4 4.2 77 23-102 13-107 (476)
390 PF04781 DUF627: Protein of un 24.3 1.5E+02 0.0033 17.9 3.3 14 60-73 6-19 (111)
391 PRK11906 transcriptional regul 24.2 3.3E+02 0.0071 20.8 7.9 75 13-90 337-430 (458)
392 PF07163 Pex26: Pex26 protein; 23.9 2.8E+02 0.0061 19.9 5.4 14 21-34 90-103 (309)
393 PF01696 Adeno_E1B_55K: Adenov 23.3 21 0.00046 26.2 -0.5 57 5-63 11-67 (386)
394 PF03013 Pyr_excise: Pyrimidin 23.3 36 0.00078 21.1 0.5 21 1-21 68-88 (130)
395 cd07229 Pat_TGL3_like Triacylg 23.3 3.1E+02 0.0067 20.4 5.3 37 2-38 102-141 (391)
396 PF10255 Paf67: RNA polymerase 23.2 2.2E+02 0.0047 21.3 4.6 59 15-73 123-187 (404)
397 PF04034 DUF367: Domain of unk 22.7 2E+02 0.0044 17.8 5.4 42 50-91 66-123 (127)
398 PF05131 Pep3_Vps18: Pep3/Vps1 22.6 76 0.0017 19.9 1.9 19 74-92 110-128 (147)
399 cd08305 Pyrin Pyrin: a protein 22.5 94 0.002 17.0 2.1 23 20-42 43-65 (73)
400 COG4700 Uncharacterized protei 22.5 2.6E+02 0.0057 19.0 9.8 76 18-95 93-188 (251)
401 PF08405 Calici_PP_N: Viral po 21.9 3.2E+02 0.0069 19.9 4.9 56 44-101 192-280 (358)
402 KOG2223 Uncharacterized conser 21.8 1.5E+02 0.0032 22.7 3.4 41 2-42 462-502 (586)
403 COG2042 Uncharacterized conser 21.6 2.5E+02 0.0054 18.4 5.6 30 44-73 109-138 (179)
404 PF12725 DUF3810: Protein of u 21.6 3.1E+02 0.0068 19.6 6.5 73 18-95 242-314 (318)
405 PRK08006 replicative DNA helic 21.5 2.5E+02 0.0055 21.3 4.7 60 4-66 74-135 (471)
406 PF07575 Nucleopor_Nup85: Nup8 21.3 1.5E+02 0.0032 22.9 3.5 54 18-74 409-462 (566)
407 KOG1585 Protein required for f 21.3 3.1E+02 0.0067 19.5 6.2 24 50-73 91-114 (308)
408 PLN03025 replication factor C 21.1 3E+02 0.0066 19.3 6.5 56 12-71 223-278 (319)
409 PF04269 DUF440: Protein of un 21.1 1.2E+02 0.0027 18.0 2.4 26 29-55 9-35 (103)
410 PF07218 RAP1: Rhoptry-associa 21.1 1.4E+02 0.003 23.6 3.3 45 11-62 617-661 (782)
411 PF02943 FeThRed_B: Ferredoxin 20.8 2E+02 0.0044 17.2 4.3 34 31-64 4-39 (108)
412 PHA01782 hypothetical protein 20.4 2.5E+02 0.0055 18.3 3.9 52 9-67 29-83 (177)
413 smart00540 LEM in nuclear memb 20.3 56 0.0012 16.2 0.8 19 34-53 9-27 (44)
414 PF07720 TPR_3: Tetratricopept 20.3 1.2E+02 0.0025 14.1 2.9 22 77-98 11-34 (36)
415 KOG2636 Splicing factor 3a, su 20.3 1.9E+02 0.0042 22.0 3.8 31 5-43 431-461 (497)
416 cd08321 Pyrin_ASC-like Pyrin D 20.1 1.2E+02 0.0025 17.0 2.2 25 18-42 49-73 (82)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.91 E-value=5e-24 Score=160.90 Aligned_cols=112 Identities=40% Similarity=0.769 Sum_probs=107.5
Q ss_pred ChHHHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------
Q 033770 1 MVDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL------- 73 (112)
Q Consensus 1 l~~~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f------- 73 (112)
+|++|.+.|+.||.+||+++|++|++.|++++|.++|+.|.+++|+.||..+|++||++|++.|++++|.++|
T Consensus 413 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p 492 (697)
T PLN03081 413 MFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKP 492 (697)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCC
Confidence 5899999999999999999999999999999999999999866899999999999999999999999999999
Q ss_pred ----H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcccC
Q 033770 74 ----W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNVHT 112 (112)
Q Consensus 74 ----~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~ya 112 (112)
| .+|+.+|+++.|+++++++.+..|++...|++|+++|+
T Consensus 493 ~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~ 539 (697)
T PLN03081 493 TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYN 539 (697)
T ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHH
Confidence 6 99999999999999999999999999999999999885
No 2
>PLN03077 Protein ECB2; Provisional
Probab=99.90 E-value=8.9e-24 Score=162.40 Aligned_cols=112 Identities=43% Similarity=0.875 Sum_probs=107.7
Q ss_pred ChHHHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------
Q 033770 1 MVDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL------- 73 (112)
Q Consensus 1 l~~~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f------- 73 (112)
+|++|++.|++||.+||+++|++|++.|++++|.++|+.|.+++|+.||..+|++||++|+|.|++++|.+++
T Consensus 576 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p 655 (857)
T PLN03077 576 LFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITP 655 (857)
T ss_pred HHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCC
Confidence 5899999999999999999999999999999999999999955899999999999999999999999999999
Q ss_pred ----H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcccC
Q 033770 74 ----W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNVHT 112 (112)
Q Consensus 74 ----~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~ya 112 (112)
| .+|..+|+.+.|+.+.+++.++.|+++..|++|+|+|+
T Consensus 656 d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya 702 (857)
T PLN03077 656 DPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYA 702 (857)
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Confidence 6 89999999999999999999999999999999999985
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.88 E-value=1.2e-22 Score=153.35 Aligned_cols=110 Identities=17% Similarity=0.275 Sum_probs=97.9
Q ss_pred ChHHHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------
Q 033770 1 MVDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL------- 73 (112)
Q Consensus 1 l~~~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f------- 73 (112)
+|++|++.|++||.+||+++|++|++.|++++|.++|+.|.+ .|+.||..+||+||++|+++|++++|.++|
T Consensus 312 lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~-~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d 390 (697)
T PLN03081 312 LYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR-TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKN 390 (697)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH-hCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCC
Confidence 589999999999999999999999999999999999999997 899999999999999999999999999999
Q ss_pred ---H----HHHHhhCChhHHHHHHHHHHhcC-CCCCcchhhhhccc
Q 033770 74 ---W----SACKIHGAVKLSHEVGKRLLELQ-PEHCRRYVVLSNVH 111 (112)
Q Consensus 74 ---~----~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~l~~~y 111 (112)
| .+|+++|+.++|.++|++|.+.+ .++..+|..+.+.|
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 436 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 6 99999999999999999998633 23444555554443
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.87 E-value=1.4e-21 Score=152.39 Aligned_cols=71 Identities=24% Similarity=0.443 Sum_probs=32.5
Q ss_pred hHHHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 2 VDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 2 ~~~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
|++|++.|+.||.++||+||++|++.|++++|.++|++|.+ .|+.||..+||+||++|++.|++++|.++|
T Consensus 460 f~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~-~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 460 LRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN-AGVEANVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 34444444444444444444444444444444444444443 344444444444444444444444444444
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.86 E-value=2.3e-21 Score=151.13 Aligned_cols=94 Identities=18% Similarity=0.196 Sum_probs=65.9
Q ss_pred ChHHHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------
Q 033770 1 MVDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL------- 73 (112)
Q Consensus 1 l~~~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f------- 73 (112)
+|++|.+.|+.||.+||+++|++|++.|++++|.++|+.|.+ .|+.||..+|++||++|+++|++++|.++|
T Consensus 636 lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k-~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g 714 (1060)
T PLN03218 636 IYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK-QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK 714 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 356677777777777777777777777777777777777775 577777777777777777777777777776
Q ss_pred -------H----HHHHhhCChhHHHHHHHHHHh
Q 033770 74 -------W----SACKIHGAVKLSHEVGKRLLE 95 (112)
Q Consensus 74 -------~----~~~~~~g~~~~a~~~~~~m~~ 95 (112)
| .+|++.|++++|.++|++|.+
T Consensus 715 ~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 715 LRPTVSTMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3 666777777777777777764
No 6
>PLN03077 Protein ECB2; Provisional
Probab=99.85 E-value=1e-20 Score=145.60 Aligned_cols=108 Identities=16% Similarity=0.200 Sum_probs=97.2
Q ss_pred ChHHHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------
Q 033770 1 MVDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL------- 73 (112)
Q Consensus 1 l~~~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f------- 73 (112)
+|++|.+.|++||.+||+++|++|++.|+++.|.+++..|.+ .|+.||..+||+||++|+++|++++|.++|
T Consensus 275 lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~-~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d 353 (857)
T PLN03077 275 LFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK-TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKD 353 (857)
T ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH-hCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Confidence 588999999999999999999999999999999999999997 899999999999999999999999999999
Q ss_pred ---H----HHHHhhCChhHHHHHHHHHHhc--CCCCCcchhhhhcc
Q 033770 74 ---W----SACKIHGAVKLSHEVGKRLLEL--QPEHCRRYVVLSNV 110 (112)
Q Consensus 74 ---~----~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~l~~~ 110 (112)
| .+|++.|++++|.++|++|.+. .|+. .++..+...
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~-~t~~~ll~a 398 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE-ITIASVLSA 398 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc-eeHHHHHHH
Confidence 6 9999999999999999999863 3544 444444433
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.80 E-value=2.2e-19 Score=93.64 Aligned_cols=50 Identities=20% Similarity=0.321 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHh
Q 033770 12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGR 62 (112)
Q Consensus 12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~ 62 (112)
||+++||++|++|++.|++++|.++|++|.+ .|+.||..||++||++|||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~-~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKK-RGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHcC
Confidence 8999999999999999999999999999997 8999999999999999986
No 8
>PF12854 PPR_1: PPR repeat
Probab=99.48 E-value=6.4e-14 Score=67.23 Aligned_cols=34 Identities=24% Similarity=0.461 Sum_probs=30.0
Q ss_pred cCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhh
Q 033770 8 KGLRANEVTFVAVLTACARARLVELGLELFHSLL 41 (112)
Q Consensus 8 ~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~ 41 (112)
.|+.||.+|||+||+++|+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4888999999999999999999999999998884
No 9
>PF12854 PPR_1: PPR repeat
Probab=99.35 E-value=1.5e-12 Score=62.39 Aligned_cols=30 Identities=27% Similarity=0.340 Sum_probs=28.4
Q ss_pred cCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 44 FEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 44 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
.|+.||.+|||+||++||+.|++++|.++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~ 30 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELF 30 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHH
Confidence 389999999999999999999999999986
No 10
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=99.04 E-value=2.9e-10 Score=53.99 Aligned_cols=35 Identities=31% Similarity=0.459 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCH
Q 033770 15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVPIM 50 (112)
Q Consensus 15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~ 50 (112)
+|||++|++|++.|++++|.++|++|.+ .|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~-~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLE-RGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCCC
Confidence 4899999999999999999999999997 8999984
No 11
>PF13041 PPR_2: PPR repeat family
Probab=98.99 E-value=6.9e-10 Score=57.41 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=34.2
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhhCChhHHHHHHHHHHhcC-CCCCcchhhhhcccC
Q 033770 48 PIMEHYGCVVDLLGRAGLLSEANEFLWSACKIHGAVKLSHEVGKRLLELQ-PEHCRRYVVLSNVHT 112 (112)
Q Consensus 48 p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~l~~~ya 112 (112)
||+++||+||++|++.|++ ++|.++|++|.+.+ +++..+|.+|++.|+
T Consensus 1 P~~~~yn~li~~~~~~~~~-----------------~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKF-----------------EEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCH-----------------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 8999999999998665554 45555667887644 456667777776654
No 12
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.95 E-value=1.1e-09 Score=51.83 Aligned_cols=34 Identities=35% Similarity=0.483 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVP 48 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p 48 (112)
++|||++|++|++.|+++.|.++|+.|++ .|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~-~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKE-QGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCC
Confidence 36999999999999999999999999997 89988
No 13
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.79 E-value=8.5e-09 Score=47.67 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhccCC
Q 033770 15 VTFVAVLTACARARLVELGLELFHSLLGEFEV 46 (112)
Q Consensus 15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~ 46 (112)
+|||++|++|++.|++++|.++|++|++ .|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~-~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRE-RGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhH-CcC
Confidence 5899999999999999999999999997 665
No 14
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=6.1e-07 Score=64.88 Aligned_cols=93 Identities=22% Similarity=0.302 Sum_probs=78.0
Q ss_pred ChHHHhhcCCCCCHHHHHHHHHHHhccCcHH----HHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH---
Q 033770 1 MVDEMYEKGLRANEVTFVAVLTACARARLVE----LGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL--- 73 (112)
Q Consensus 1 l~~~M~~~g~~p~~~t~~~li~~~~~~~~~~----~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f--- 73 (112)
|..+|.+..++||..|||+++++-++.|.++ .|.+++.+|++ -|+.|...+|-.+|..++|-++..+..--.
T Consensus 260 Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKe-iGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 260 LVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKE-IGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHH-hCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 4679999999999999999999999999765 45688899997 899999999999999999999987733322
Q ss_pred --------------------H----HHHHhhCChhHHHHHHHHHH
Q 033770 74 --------------------W----SACKIHGAVKLSHEVGKRLL 94 (112)
Q Consensus 74 --------------------~----~~~~~~g~~~~a~~~~~~m~ 94 (112)
+ ..|.+..|.+.|..+..-..
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~ 383 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLK 383 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1 67777788888888876665
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.48 E-value=1.9e-06 Score=61.09 Aligned_cols=86 Identities=10% Similarity=0.019 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH---------------H-HHHH
Q 033770 15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL---------------W-SACK 78 (112)
Q Consensus 15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f---------------~-~~~~ 78 (112)
..+..+...+.+.|+.++|..+++++.. .+......+++.+..+|.+.|++++|.+.+ + ..+.
T Consensus 215 ~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~ 293 (389)
T PRK11788 215 RASILLGDLALAQGDYAAAIEALERVEE-QDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLE 293 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH-HChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3444455555555555555555555553 221111334455555555555555555555 0 4455
Q ss_pred hhCChhHHHHHHHHHHhcCCCCC
Q 033770 79 IHGAVKLSHEVGKRLLELQPEHC 101 (112)
Q Consensus 79 ~~g~~~~a~~~~~~m~~~~~~~~ 101 (112)
+.|+.++|..+++++.+..|+++
T Consensus 294 ~~g~~~~A~~~l~~~l~~~P~~~ 316 (389)
T PRK11788 294 EQEGPEAAQALLREQLRRHPSLR 316 (389)
T ss_pred HhCCHHHHHHHHHHHHHhCcCHH
Confidence 55555555555555555445443
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.47 E-value=2.6e-06 Score=60.38 Aligned_cols=20 Identities=10% Similarity=0.135 Sum_probs=7.3
Q ss_pred HHHHHhccCcHHHHHHHHHH
Q 033770 20 VLTACARARLVELGLELFHS 39 (112)
Q Consensus 20 li~~~~~~~~~~~a~~~~~~ 39 (112)
+...+.+.|++++|..+++.
T Consensus 75 la~~~~~~g~~~~A~~~~~~ 94 (389)
T PRK11788 75 LGNLFRRRGEVDRAIRIHQN 94 (389)
T ss_pred HHHHHHHcCcHHHHHHHHHH
Confidence 33333333333333333333
No 17
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.39 E-value=2.4e-07 Score=71.37 Aligned_cols=88 Identities=18% Similarity=0.161 Sum_probs=74.2
Q ss_pred hHHHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH---H----
Q 033770 2 VDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL---W---- 74 (112)
Q Consensus 2 ~~~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f---~---- 74 (112)
+-.|+..|+.||.+||.++|.-||..|+++.|- +|.-|+- .....+-..++.++.+..++|+.+.+.+-. |
T Consensus 13 la~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~-ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll 90 (1088)
T KOG4318|consen 13 LALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEI-KSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLL 90 (1088)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhc-ccccccchhHHHHHhcccccccccCCCCCchhHHHHHH
Confidence 467889999999999999999999999999998 9999885 466668888899999999999988888776 6
Q ss_pred HHHHhhCChhHHHHHHH
Q 033770 75 SACKIHGAVKLSHEVGK 91 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~ 91 (112)
.+|.++||+..-+.+=+
T Consensus 91 ~ayr~hGDli~fe~veq 107 (1088)
T KOG4318|consen 91 KAYRIHGDLILFEVVEQ 107 (1088)
T ss_pred HHHHhccchHHHHHHHH
Confidence 88889988776444433
No 18
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.33 E-value=9.6e-06 Score=61.93 Aligned_cols=57 Identities=12% Similarity=-0.008 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
..+..+...+.+.|+.++|..+++.+.. ..+.+...|..+...|.+.|++++|.+.|
T Consensus 568 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 624 (899)
T TIGR02917 568 EPALALAQYYLGKGQLKKALAILNEAAD--AAPDSPEAWLMLGRAQLAAGDLNKAVSSF 624 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3344444444444444444444444442 22234444445555555555555555444
No 19
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.26 E-value=1.7e-05 Score=60.63 Aligned_cols=96 Identities=20% Similarity=0.201 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----
Q 033770 12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W---- 74 (112)
Q Consensus 12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~---- 74 (112)
.+..++..+...+.+.|+.++|..+++++.. . -+.+...+..+...|.+.|++++|.+++ |
T Consensus 531 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 608 (899)
T TIGR02917 531 KNLRAILALAGLYLRTGNEEEAVAWLEKAAE-L-NPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLG 608 (899)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3555666666666677777777777777653 2 2335566667777777777777777776 2
Q ss_pred HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhc
Q 033770 75 SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSN 109 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~ 109 (112)
..+...|++++|...++++.+..|.++..+..+..
T Consensus 609 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 643 (899)
T TIGR02917 609 RAQLAAGDLNKAVSSFKKLLALQPDSALALLLLAD 643 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 66667778888888888777777766655544443
No 20
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.19 E-value=1.4e-06 Score=39.90 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHH
Q 033770 51 EHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 51 ~~~~~li~~~~~~g~~~~A~~~f 73 (112)
++||+||++|++.|++++|.++|
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~ 23 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVF 23 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHH
Confidence 47999999999999999998886
No 21
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.18 E-value=4.5e-05 Score=47.65 Aligned_cols=93 Identities=12% Similarity=-0.020 Sum_probs=78.0
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H-
Q 033770 10 LRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W- 74 (112)
Q Consensus 10 ~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~- 74 (112)
+.|+. +..+-.++.+.|++++|...|+.... ..| +...|..+-..+.+.|++++|...| |
T Consensus 22 ~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~ 96 (144)
T PRK15359 22 VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVY 96 (144)
T ss_pred cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHH
Confidence 34554 45566777899999999999999874 334 7888899999999999999999999 2
Q ss_pred ---HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770 75 ---SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL 107 (112)
Q Consensus 75 ---~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l 107 (112)
.++...|+.++|...++...+..|+++..+...
T Consensus 97 ~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~ 132 (144)
T PRK15359 97 QTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIR 132 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 778889999999999999999999988877554
No 22
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.15 E-value=1.1e-05 Score=53.72 Aligned_cols=71 Identities=17% Similarity=0.297 Sum_probs=59.8
Q ss_pred hHHHhhcCCCCCHHHHHHHHHHHhccC----------------cHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCC
Q 033770 2 VDEMYEKGLRANEVTFVAVLTACARAR----------------LVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGL 65 (112)
Q Consensus 2 ~~~M~~~g~~p~~~t~~~li~~~~~~~----------------~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 65 (112)
++.|.+.|+.-|..+|+.||+.+=+.. +-+-|..++++|.. +|+.||..++..|+..|++.+.
T Consensus 75 L~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 75 LKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 468999999999999999999887532 24778999999997 9999999999999999999998
Q ss_pred hhH-HHHHH
Q 033770 66 LSE-ANEFL 73 (112)
Q Consensus 66 ~~~-A~~~f 73 (112)
.-. ..++.
T Consensus 154 p~~K~~rmm 162 (228)
T PF06239_consen 154 PMKKYRRMM 162 (228)
T ss_pred HHHHHHHHH
Confidence 543 33433
No 23
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.15 E-value=1.7e-05 Score=47.66 Aligned_cols=62 Identities=19% Similarity=0.310 Sum_probs=53.3
Q ss_pred ChHHHhhcCC-CCCHHHHHHHHHHHhccCc--------HHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhc
Q 033770 1 MVDEMYEKGL-RANEVTFVAVLTACARARL--------VELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRA 63 (112)
Q Consensus 1 l~~~M~~~g~-~p~~~t~~~li~~~~~~~~--------~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 63 (112)
+|+.+++.|+ .|+..+|+.+|.+-++... +-..+.+++.|.. .+++|+..|||.+|..+.+.
T Consensus 47 lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~etYnivl~~Llkg 117 (120)
T PF08579_consen 47 LYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDETYNIVLGSLLKG 117 (120)
T ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHHHHHHHHHHHHHh
Confidence 4778899999 9999999999999886533 4567889999997 89999999999999987653
No 24
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=2.4e-05 Score=56.86 Aligned_cols=87 Identities=10% Similarity=0.134 Sum_probs=66.1
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH---------
Q 033770 3 DEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL--------- 73 (112)
Q Consensus 3 ~~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f--------- 73 (112)
++=.+...+.+..+||.+|.+-+-+.+ ..+..+|.+ ..+.||..|+|++++.-++.|+++.|.+-+
T Consensus 231 kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMis-qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKe 305 (625)
T KOG4422|consen 231 KEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMIS-QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKE 305 (625)
T ss_pred HHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHH-hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 344445567888888888876554333 678899997 799999999999999999999999998887
Q ss_pred ---------H----HHHHhhCCh-hHHHHHHHHHH
Q 033770 74 ---------W----SACKIHGAV-KLSHEVGKRLL 94 (112)
Q Consensus 74 ---------~----~~~~~~g~~-~~a~~~~~~m~ 94 (112)
| ..+++.++. +.+..+..++.
T Consensus 306 iGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~ 340 (625)
T KOG4422|consen 306 IGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ 340 (625)
T ss_pred hCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHH
Confidence 2 666666665 44666666665
No 25
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.09 E-value=3.5e-06 Score=39.44 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHH
Q 033770 51 EHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 51 ~~~~~li~~~~~~g~~~~A~~~f 73 (112)
.+||+||++|++.|++++|.++|
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~ 23 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELF 23 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHH
Confidence 37899999988888887777775
No 26
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.00 E-value=0.00018 Score=46.46 Aligned_cols=57 Identities=12% Similarity=0.102 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
..+..+-..+...|++++|...+++..+ .. +.+...+..+...|...|++++|.+.|
T Consensus 66 ~~~~~la~~~~~~~~~~~A~~~~~~al~-~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~ 122 (234)
T TIGR02521 66 LAYLALALYYQQLGELEKAEDSFRRALT-LN-PNNGDVLNNYGTFLCQQGKYEQAMQQF 122 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh-hC-CCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 3444444444445555555555544442 11 113333444444444444444444444
No 27
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.96 E-value=0.00024 Score=45.90 Aligned_cols=90 Identities=12% Similarity=0.026 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S 75 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~ 75 (112)
+...+..+-..+...|++++|...+++.........+...+..+-..|.+.|++++|.+.| | .
T Consensus 98 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~ 177 (234)
T TIGR02521 98 NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAE 177 (234)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHH
Confidence 4445556666666677777777777766541111223345555666666777777776666 1 4
Q ss_pred HHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770 76 ACKIHGAVKLSHEVGKRLLELQPEHCR 102 (112)
Q Consensus 76 ~~~~~g~~~~a~~~~~~m~~~~~~~~~ 102 (112)
.+...|+.++|.+.+++..+..|.++.
T Consensus 178 ~~~~~~~~~~A~~~~~~~~~~~~~~~~ 204 (234)
T TIGR02521 178 LYYLRGQYKDARAYLERYQQTYNQTAE 204 (234)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 555666777777777766655444433
No 28
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.93 E-value=0.00028 Score=42.88 Aligned_cols=92 Identities=12% Similarity=0.034 Sum_probs=75.4
Q ss_pred CCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H-
Q 033770 10 LRANE-VTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W- 74 (112)
Q Consensus 10 ~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~- 74 (112)
..|+. .....+-..+.+.|+.++|.+.++.... .+ ..+...|..+-..|.+.|++++|.+++ |
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 89 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA-YD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYF 89 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH-hC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 34533 4455677788899999999999999875 32 347788888999999999999999998 2
Q ss_pred ---HHHHhhCChhHHHHHHHHHHhcCCCCCcc
Q 033770 75 ---SACKIHGAVKLSHEVGKRLLELQPEHCRR 103 (112)
Q Consensus 75 ---~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 103 (112)
..+...|+.+.|...++...+..|++...
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 90 HAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 77888999999999999999999887653
No 29
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.91 E-value=1.4e-05 Score=37.28 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHH
Q 033770 51 EHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 51 ~~~~~li~~~~~~g~~~~A~~~f 73 (112)
.+||++|++|++.|+++.|.++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~ 24 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLF 24 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHH
Confidence 68999999998888888877765
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.90 E-value=6.9e-05 Score=51.33 Aligned_cols=97 Identities=19% Similarity=0.183 Sum_probs=72.6
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H-
Q 033770 10 LRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W- 74 (112)
Q Consensus 10 ~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~- 74 (112)
.++|...|..+-..+.+.|+.++|.+.+++..+ ..| |....+.++..+...|+.+++.+++ |
T Consensus 142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~ 218 (280)
T PF13429_consen 142 APDSARFWLALAEIYEQLGDPDKALRDYRKALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWD 218 (280)
T ss_dssp --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHH
Confidence 456777777788888888888888888888764 245 4667788888888888888877777 2
Q ss_pred ---HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhc
Q 033770 75 ---SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSN 109 (112)
Q Consensus 75 ---~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~ 109 (112)
.++...|+.++|...+++..+..|+++.....+..
T Consensus 219 ~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~ 256 (280)
T PF13429_consen 219 ALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYAD 256 (280)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHH
T ss_pred HHHHHhcccccccccccccccccccccccccccccccc
Confidence 77888899999999999999888988876655543
No 31
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.87 E-value=4.8e-05 Score=55.44 Aligned_cols=57 Identities=19% Similarity=0.259 Sum_probs=52.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 16 TFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
|..++|+.|-+.|..+++..+...=.. +|+-||..|+|.||+.+.+.|++..|.+++
T Consensus 105 t~ha~vR~~l~~~~~~~~l~~L~n~~~-yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~ 161 (429)
T PF10037_consen 105 THHALVRQCLELGAEDELLELLKNRLQ-YGIFPDNFSFNLLMDHFLKKGNYKSAAKVA 161 (429)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHhChhh-cccCCChhhHHHHHHHHhhcccHHHHHHHH
Confidence 445999999999999999999988776 999999999999999999999999999998
No 32
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.74 E-value=0.00074 Score=36.87 Aligned_cols=80 Identities=19% Similarity=0.140 Sum_probs=63.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHh
Q 033770 17 FVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKI 79 (112)
Q Consensus 17 ~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~ 79 (112)
+..+-..+...|++++|...++...+ . ...+...+..+-..+...|++++|.+.| | ..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE-L-DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh-c-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 44566677788999999999999875 2 2234467788888899999999999998 2 66777
Q ss_pred hCChhHHHHHHHHHHhcCC
Q 033770 80 HGAVKLSHEVGKRLLELQP 98 (112)
Q Consensus 80 ~g~~~~a~~~~~~m~~~~~ 98 (112)
.|+.+.|...++...+..|
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 8899999999988876555
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.68 E-value=0.00019 Score=49.11 Aligned_cols=97 Identities=15% Similarity=0.069 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH----------------H-
Q 033770 12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL----------------W- 74 (112)
Q Consensus 12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f----------------~- 74 (112)
++...+..++..+.+.++++++..+++.........++...|..+-..+.+.|+.++|.+.+ +
T Consensus 108 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~ 187 (280)
T PF13429_consen 108 GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALA 187 (280)
T ss_dssp ----------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 55666777777788888888888888887643334567777778888888888888888887 1
Q ss_pred HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770 75 SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS 108 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~ 108 (112)
..+...|+.+++.++++...+..|+++..+..+.
T Consensus 188 ~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la 221 (280)
T PF13429_consen 188 WLLIDMGDYDEAREALKRLLKAAPDDPDLWDALA 221 (280)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHH
T ss_pred HHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 4556677778777888777766666666554443
No 34
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.67 E-value=0.0023 Score=37.58 Aligned_cols=89 Identities=8% Similarity=0.061 Sum_probs=69.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH----------------H----
Q 033770 16 TFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL----------------W---- 74 (112)
Q Consensus 16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f----------------~---- 74 (112)
++-.+...+.+.|++++|...++.+.+...-.| ....+..+...+.+.|++++|.+.| |
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 345566677888999999999999985221111 2346667889999999999999999 1
Q ss_pred HHHHhhCChhHHHHHHHHHHhcCCCCCcch
Q 033770 75 SACKIHGAVKLSHEVGKRLLELQPEHCRRY 104 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 104 (112)
..+...|+.+.|...++++.+..|+++...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 677788999999999999998888765543
No 35
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.64 E-value=0.001 Score=50.43 Aligned_cols=56 Identities=13% Similarity=0.001 Sum_probs=23.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 16 TFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
+|..+-..+...|++++|...+++... . -+-+...|..+-..|...|++++|.+.|
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~-~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 422 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALK-L-NSEDPDIYYHRAQLHFIKGEFAQAGKDY 422 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 333344444444444444444444432 1 1113344444444444444444444444
No 36
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.63 E-value=0.0029 Score=41.59 Aligned_cols=94 Identities=14% Similarity=0.158 Sum_probs=76.6
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHH-HHhcCC--hhHHHHHH-------------
Q 033770 11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDL-LGRAGL--LSEANEFL------------- 73 (112)
Q Consensus 11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~-~~~~g~--~~~A~~~f------------- 73 (112)
+.|...|..+=..+...|+.++|...+++..+ +.| +...+..+-.+ |.+.|+ .++|.+++
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~a 146 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTA 146 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhH
Confidence 56788888998999999999999999998875 334 77777777776 477787 48999999
Q ss_pred H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770 74 W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL 107 (112)
Q Consensus 74 ~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l 107 (112)
+ ..+...|++++|...++++.+..|++...+.++
T Consensus 147 l~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 147 LMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 2 677789999999999999999888776665544
No 37
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.52 E-value=0.0022 Score=48.75 Aligned_cols=93 Identities=13% Similarity=0.047 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC-HHHHHHHHHHHHhcCChhHHHHHH-------------H----
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPI-MEHYGCVVDLLGRAGLLSEANEFL-------------W---- 74 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~f-------------~---- 74 (112)
+...|+.+-..+...|++++|...+++... ..|+ ...|..+-..+...|++++|.+.| |
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~---l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 406 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIE---LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRA 406 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 345677777778889999999999999874 3454 567888888999999999999998 3
Q ss_pred HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770 75 SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS 108 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~ 108 (112)
..+...|+.++|...|++..+..|++...+..+.
T Consensus 407 ~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la 440 (615)
T TIGR00990 407 QLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLG 440 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHH
Confidence 6777889999999999999998888766555443
No 38
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.51 E-value=0.002 Score=49.55 Aligned_cols=47 Identities=9% Similarity=-0.104 Sum_probs=21.6
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhH
Q 033770 20 VLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSE 68 (112)
Q Consensus 20 li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 68 (112)
+..++.+.|+.++|...+++... .. ..+...+..+-..|.+.|++++
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~-~~-p~~~~~~~~Lg~~l~~~G~~~e 264 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALA-RG-LDGAALRRSLGLAYYQSGRSRE 264 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh-cC-CCCHHHHHHHHHHHHHcCCchh
Confidence 33444455555555555555443 11 1133444444455555555543
No 39
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.47 E-value=0.0025 Score=50.24 Aligned_cols=105 Identities=15% Similarity=0.115 Sum_probs=55.1
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccC----CCcCHHHHHHHHHHHHhcCChhHHHHHH-----
Q 033770 3 DEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFE----VVPIMEHYGCVVDLLGRAGLLSEANEFL----- 73 (112)
Q Consensus 3 ~~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g----~~p~~~~~~~li~~~~~~g~~~~A~~~f----- 73 (112)
+.|+..|.+.-..+--.+-++|...+..++|..++.......+ ..++......|.-+|...+++++|..++
T Consensus 316 ~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 316 EAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE 395 (822)
T ss_pred HHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 4444455442333444556666666666666666666543211 1223333455666666666666666665
Q ss_pred -------------------H--------HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770 74 -------------------W--------SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL 107 (112)
Q Consensus 74 -------------------~--------~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l 107 (112)
| ..+...|+..+|++.++++....|.++.....+
T Consensus 396 ~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~ 456 (822)
T PRK14574 396 QTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIAL 456 (822)
T ss_pred cCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 2 334555666666666666655556555544433
No 40
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.40 E-value=0.0018 Score=39.73 Aligned_cols=61 Identities=15% Similarity=0.148 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHh--------------hhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSL--------------LGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m--------------~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
|..++.++|-+++..|+++....+.+.. .......||..+-.+++.+|+..|++..|++++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~v 75 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLV 75 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHH
Confidence 5778999999999999999988887653 112346789999999999999999999999998
No 41
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.40 E-value=0.0013 Score=37.08 Aligned_cols=66 Identities=15% Similarity=0.067 Sum_probs=39.2
Q ss_pred cCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H---HHHHhhCChhHHHHHH
Q 033770 27 ARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W---SACKIHGAVKLSHEVG 90 (112)
Q Consensus 27 ~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~---~~~~~~g~~~~a~~~~ 90 (112)
.|+++.|..+++++.....-.|+...+-.+-..|.+.|++++|.+++ | .+|-+.|+.++|.+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 35667777777777642111123334444667777777777777776 1 6666777777777766
Q ss_pred HH
Q 033770 91 KR 92 (112)
Q Consensus 91 ~~ 92 (112)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 42
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.39 E-value=0.0026 Score=45.45 Aligned_cols=83 Identities=14% Similarity=0.123 Sum_probs=64.9
Q ss_pred HHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhH
Q 033770 23 ACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKL 85 (112)
Q Consensus 23 ~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~ 85 (112)
.....|++++|...+.+..+ . -.-+...|..+-.+|.+.|++++|...+ | .+|...|+++.
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~-~-~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAID-L-DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 34567899999999998875 2 2226677778888899999999999988 2 67778899999
Q ss_pred HHHHHHHHHhcCCCCCcchhhh
Q 033770 86 SHEVGKRLLELQPEHCRRYVVL 107 (112)
Q Consensus 86 a~~~~~~m~~~~~~~~~~~~~l 107 (112)
|...|++..++.|.++.....+
T Consensus 89 A~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999998888876655443
No 43
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.39 E-value=0.0022 Score=46.57 Aligned_cols=92 Identities=16% Similarity=0.135 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHH
Q 033770 15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SAC 77 (112)
Q Consensus 15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~ 77 (112)
....+|++.+...++++.|..+|+++.+ .. |++ ...|.+.+...++-.+|.+++ + +-|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~-~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRE-RD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHh-cC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3445677778888999999999999986 33 553 445888888889999999988 1 667
Q ss_pred HhhCChhHHHHHHHHHHhcCCCCCcchhhhhccc
Q 033770 78 KIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNVH 111 (112)
Q Consensus 78 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~y 111 (112)
.+.++.+.|.++.++..+..|.+..+|..|+..|
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Y 278 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECY 278 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 7888999999999999999999888888887766
No 44
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.36 E-value=0.00069 Score=36.18 Aligned_cols=60 Identities=18% Similarity=0.138 Sum_probs=35.4
Q ss_pred HHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhhCChhHHHHHHHHHHhcCCCC
Q 033770 22 TACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFLWSACKIHGAVKLSHEVGKRLLELQPEH 100 (112)
Q Consensus 22 ~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~g~~~~a~~~~~~m~~~~~~~ 100 (112)
..+.+.|++++|...|++..+ .. | +...+..+- ..+...|+.++|...|++..+..|++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~-~~--P~~~~a~~~lg-----------------~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALK-QD--PDNPEAWYLLG-----------------RILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHC-CS--TTHHHHHHHHH-----------------HHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHcCCHHHHHHHHHHHHH-HC--CCCHHHHHHHH-----------------HHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 345677788888888887775 22 4 333333333 45556667777777777777666665
Q ss_pred C
Q 033770 101 C 101 (112)
Q Consensus 101 ~ 101 (112)
|
T Consensus 65 p 65 (65)
T PF13432_consen 65 P 65 (65)
T ss_dssp H
T ss_pred C
Confidence 3
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.33 E-value=0.0011 Score=50.08 Aligned_cols=100 Identities=15% Similarity=0.127 Sum_probs=82.0
Q ss_pred CCCCCHHHHHH---HHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-----------
Q 033770 9 GLRANEVTFVA---VLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL----------- 73 (112)
Q Consensus 9 g~~p~~~t~~~---li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f----------- 73 (112)
.+++|.-.||+ +=-.|.|.+.++.|+-.|++.. .+.| +.+.-..+-..+-+.|+.|+|.+++
T Consensus 481 Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~ 557 (638)
T KOG1126|consen 481 ALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP 557 (638)
T ss_pred hhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc
Confidence 46677777776 4445679999999999998865 4677 7777788888999999999999999
Q ss_pred ---H---HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhccc
Q 033770 74 ---W---SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNVH 111 (112)
Q Consensus 74 ---~---~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~y 111 (112)
| ..+-..++.++|...++++++..|++...+.++-.+|
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~ 601 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIY 601 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 2 5666778999999999999999999988888776654
No 46
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.29 E-value=0.0054 Score=49.30 Aligned_cols=72 Identities=19% Similarity=0.118 Sum_probs=33.8
Q ss_pred CcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHH
Q 033770 28 RLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVG 90 (112)
Q Consensus 28 ~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~ 90 (112)
|++++|...+++..+ ..|+...|..+-..+.+.|+.++|.+.+ + ..+...|+.++|...+
T Consensus 590 Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 590 GQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred CCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 444444444444432 2234444444445555555555555554 0 3344445555555555
Q ss_pred HHHHhcCCCCCc
Q 033770 91 KRLLELQPEHCR 102 (112)
Q Consensus 91 ~~m~~~~~~~~~ 102 (112)
+...+..|+++.
T Consensus 667 ~~AL~l~P~~~~ 678 (987)
T PRK09782 667 ERAHKGLPDDPA 678 (987)
T ss_pred HHHHHhCCCCHH
Confidence 555544454443
No 47
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.23 E-value=0.0049 Score=47.43 Aligned_cols=83 Identities=20% Similarity=0.155 Sum_probs=43.4
Q ss_pred HhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhH-
Q 033770 24 CARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKL- 85 (112)
Q Consensus 24 ~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~- 85 (112)
+.+.|++++|...++.+.. ..-.++...+..+...+.+.|++++|.+.+ + ..+...|+.++
T Consensus 187 l~~~g~~~eA~~~~~~~l~-~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA 265 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLP-FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREA 265 (656)
T ss_pred HHHcCCHHHHHHHHHHHHh-cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhh
Confidence 4455555555555555443 221223333344455566666666666666 1 44455566654
Q ss_pred ---HHHHHHHHHhcCCCCCcchhhh
Q 033770 86 ---SHEVGKRLLELQPEHCRRYVVL 107 (112)
Q Consensus 86 ---a~~~~~~m~~~~~~~~~~~~~l 107 (112)
|...+++..+..|+++..+..+
T Consensus 266 ~~~A~~~~~~Al~l~P~~~~a~~~l 290 (656)
T PRK15174 266 KLQAAEHWRHALQFNSDNVRIVTLY 290 (656)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 5666666666666554444333
No 48
>PRK12370 invasion protein regulator; Provisional
Probab=97.22 E-value=0.0075 Score=45.43 Aligned_cols=56 Identities=18% Similarity=-0.064 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
..+..+=..+...|++++|...+++..+ . .| +...+..+-..|...|++++|.+.+
T Consensus 339 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~-l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 339 QALGLLGLINTIHSEYIVGSLLFKQANL-L--SPISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH-h--CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3333443344455555555555555543 1 22 2334444455555555555555555
No 49
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.17 E-value=0.01 Score=47.71 Aligned_cols=91 Identities=11% Similarity=0.097 Sum_probs=78.0
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H
Q 033770 9 GLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W 74 (112)
Q Consensus 9 g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~ 74 (112)
.+.|+...|..+-..+.+.|+.++|...+++... ..| +...++.+-..+.+.|+.++|.+.+ |
T Consensus 604 ~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~ 680 (987)
T PRK09782 604 NIAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALI 680 (987)
T ss_pred HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 3468888899999999999999999999999875 345 5666778888999999999999998 2
Q ss_pred ----HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770 75 ----SACKIHGAVKLSHEVGKRLLELQPEHCR 102 (112)
Q Consensus 75 ----~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 102 (112)
.++...|+.++|+..+++..+..|+...
T Consensus 681 ~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~ 712 (987)
T PRK09782 681 RQLAYVNQRLDDMAATQHYARLVIDDIDNQAL 712 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCch
Confidence 7888999999999999999998887643
No 50
>PRK12370 invasion protein regulator; Provisional
Probab=97.15 E-value=0.0079 Score=45.32 Aligned_cols=95 Identities=11% Similarity=-0.093 Sum_probs=65.2
Q ss_pred CCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCH-HHHHHHHHHHHhcCChhHHHHHH--------------H
Q 033770 11 RAN-EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIM-EHYGCVVDLLGRAGLLSEANEFL--------------W 74 (112)
Q Consensus 11 ~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~f--------------~ 74 (112)
.|| ...+..+-..+...|+.++|...+++..+ ..|+. ..+..+...+...|++++|.+.+ +
T Consensus 368 ~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~ 444 (553)
T PRK12370 368 SPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILL 444 (553)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHH
Confidence 454 45677777788889999999999998875 23432 22333444566688889888877 1
Q ss_pred ----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770 75 ----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS 108 (112)
Q Consensus 75 ----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~ 108 (112)
..+...|+.++|...++++....|.+......|.
T Consensus 445 ~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~ 482 (553)
T PRK12370 445 SMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLY 482 (553)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 5666789999999998887665565544444443
No 51
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.12 E-value=0.016 Score=40.36 Aligned_cols=82 Identities=18% Similarity=0.167 Sum_probs=57.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHH
Q 033770 17 FVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACK 78 (112)
Q Consensus 17 ~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~ 78 (112)
|..+=..+...|+.++|...|.+..+ ..| +...|+.+-..|.+.|++++|.+.| | ..+.
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~---l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALA---LRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44444456677788888877777664 234 5677777777788888888888777 2 4455
Q ss_pred hhCChhHHHHHHHHHHhcCCCCC
Q 033770 79 IHGAVKLSHEVGKRLLELQPEHC 101 (112)
Q Consensus 79 ~~g~~~~a~~~~~~m~~~~~~~~ 101 (112)
..|+.++|.+.|+...+..|+++
T Consensus 144 ~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCH
Confidence 66778888888777777777665
No 52
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.11 E-value=0.00025 Score=38.16 Aligned_cols=46 Identities=22% Similarity=0.200 Sum_probs=33.3
Q ss_pred hccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 25 ARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 25 ~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
.+.|++++|..++++.... .| +...+-.+...|.+.|++++|.+++
T Consensus 2 l~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l 48 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELL 48 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3578899999999998752 23 6666667777777777777777765
No 53
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.11 E-value=0.004 Score=37.59 Aligned_cols=80 Identities=23% Similarity=0.310 Sum_probs=61.3
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhccCC-CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhhCChhHHHHHHHHHHh-
Q 033770 18 VAVLTACARARLVELGLELFHSLLGEFEV-VPIMEHYGCVVDLLGRAGLLSEANEFLWSACKIHGAVKLSHEVGKRLLE- 95 (112)
Q Consensus 18 ~~li~~~~~~~~~~~a~~~~~~m~~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~g~~~~a~~~~~~m~~- 95 (112)
..-|..|...+++.....+++.+++ .|+ .|++.+||.++++-++..--.+ ...+.+-..+.++++|..
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkR-N~i~lPsv~~Yn~VL~Si~~R~lD~~---------~ie~kl~~LLtvYqDiL~~ 98 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKR-NGITLPSVELYNKVLKSIAKRELDSE---------DIENKLTNLLTVYQDILSN 98 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHccccch---------hHHHHHHHHHHHHHHHHHh
Confidence 4577788888999999999999998 899 9999999999999887654222 334466677788888874
Q ss_pred -cCCCCCcchhhh
Q 033770 96 -LQPEHCRRYVVL 107 (112)
Q Consensus 96 -~~~~~~~~~~~l 107 (112)
+.|++..+..++
T Consensus 99 ~lKP~~etYnivl 111 (120)
T PF08579_consen 99 KLKPNDETYNIVL 111 (120)
T ss_pred ccCCcHHHHHHHH
Confidence 667655544444
No 54
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.06 E-value=0.0021 Score=44.85 Aligned_cols=66 Identities=15% Similarity=0.261 Sum_probs=56.7
Q ss_pred hHHHhhcCCCCCHHHHHHHHHHHhccCc----------------HHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCC
Q 033770 2 VDEMYEKGLRANEVTFVAVLTACARARL----------------VELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGL 65 (112)
Q Consensus 2 ~~~M~~~g~~p~~~t~~~li~~~~~~~~----------------~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 65 (112)
++.|++.|+.-|..+|+.||+.+=|..- -+=+..++++|.. .|+.||-.+--.||.+|++-|.
T Consensus 95 Lk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 95 LKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccc
Confidence 4679999999999999999998876543 2346789999996 8999999999999999999998
Q ss_pred hhH
Q 033770 66 LSE 68 (112)
Q Consensus 66 ~~~ 68 (112)
.-+
T Consensus 174 p~~ 176 (406)
T KOG3941|consen 174 PTK 176 (406)
T ss_pred cHH
Confidence 543
No 55
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.00 E-value=0.015 Score=45.44 Aligned_cols=86 Identities=7% Similarity=-0.150 Sum_probs=72.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHH
Q 033770 16 TFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACK 78 (112)
Q Consensus 16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~ 78 (112)
.+..+...+...|+.++|..+++++.. .-+-+...+..+...+.+.|++++|++.+ + ....
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al 438 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTAL 438 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence 445667788899999999999999875 33447788899999999999999999999 1 5667
Q ss_pred hhCChhHHHHHHHHHHhcCCCCCcc
Q 033770 79 IHGAVKLSHEVGKRLLELQPEHCRR 103 (112)
Q Consensus 79 ~~g~~~~a~~~~~~m~~~~~~~~~~ 103 (112)
..|++++|+.+++++.+..|+++..
T Consensus 439 ~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 439 DLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 7889999999999999999988754
No 56
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.99 E-value=0.0093 Score=41.28 Aligned_cols=44 Identities=11% Similarity=0.101 Sum_probs=18.6
Q ss_pred CcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 28 RLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 28 ~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
++.+.|..+|+...+ -+..+...|..=|+-+.+.|+.+.|..+|
T Consensus 50 ~d~~~A~~Ife~glk--~f~~~~~~~~~Y~~~l~~~~d~~~aR~lf 93 (280)
T PF05843_consen 50 KDPKRARKIFERGLK--KFPSDPDFWLEYLDFLIKLNDINNARALF 93 (280)
T ss_dssp S-HHHHHHHHHHHHH--HHTT-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 334444555544443 23334444444444444445555555444
No 57
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.99 E-value=0.014 Score=45.66 Aligned_cols=94 Identities=16% Similarity=0.026 Sum_probs=70.6
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH------------H----H
Q 033770 12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL------------W----S 75 (112)
Q Consensus 12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f------------~----~ 75 (112)
.+...+..+-.++.+.|++++|..++++... . -+.+...+..+...+.+.|++++|.+.+ | .
T Consensus 47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~-~-~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~~~~la~ 124 (765)
T PRK10049 47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALS-L-EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKANLLALAY 124 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3444677888888888999999888888764 1 2224556678888888889999888888 2 5
Q ss_pred HHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770 76 ACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL 107 (112)
Q Consensus 76 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l 107 (112)
.+...|+.+.|...+++..+..|+++.....+
T Consensus 125 ~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~l 156 (765)
T PRK10049 125 VYKRAGRHWDELRAMTQALPRAPQTQQYPTEY 156 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 66778888999999998888888876654433
No 58
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.98 E-value=0.026 Score=35.98 Aligned_cols=87 Identities=15% Similarity=0.096 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC--HHHHHHHHHHHHhcCChhHHHHHH-------------H---
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPI--MEHYGCVVDLLGRAGLLSEANEFL-------------W--- 74 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~f-------------~--- 74 (112)
+...+..+-..+...|++++|...|++... ..-.+. ...+..+-..|.+.|++++|.+.+ |
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALK-LEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 344567777788889999999999999875 332222 467788889999999999999998 1
Q ss_pred -HHHHhhCC--------------hhHHHHHHHHHHhcCCCC
Q 033770 75 -SACKIHGA--------------VKLSHEVGKRLLELQPEH 100 (112)
Q Consensus 75 -~~~~~~g~--------------~~~a~~~~~~m~~~~~~~ 100 (112)
..+...|+ .++|.+.+++..+.+|++
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 34444444 466777777777777765
No 59
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.97 E-value=0.014 Score=47.59 Aligned_cols=91 Identities=11% Similarity=0.061 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHH------------HHHHHhcCChhHHHHHH-------
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCV------------VDLLGRAGLLSEANEFL------- 73 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~l------------i~~~~~~g~~~~A~~~f------- 73 (112)
|...+..+-..+.+.|+.++|...|++..+...-.+....|..+ -..+.+.|++++|.+.|
T Consensus 302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~ 381 (1157)
T PRK11447 302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD 381 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 55666667777777778888877777766411111111122222 23456777777777777
Q ss_pred ------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcc
Q 033770 74 ------W----SACKIHGAVKLSHEVGKRLLELQPEHCRR 103 (112)
Q Consensus 74 ------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 103 (112)
+ ..+...|+.++|++.|++..+..|.+...
T Consensus 382 P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a 421 (1157)
T PRK11447 382 NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNA 421 (1157)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 1 56667778888888888777777766543
No 60
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.89 E-value=0.0048 Score=32.98 Aligned_cols=47 Identities=26% Similarity=0.324 Sum_probs=32.2
Q ss_pred hcCChhHHHHHH----------------H-HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770 62 RAGLLSEANEFL----------------W-SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS 108 (112)
Q Consensus 62 ~~g~~~~A~~~f----------------~-~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~ 108 (112)
+.|++++|.++| + ..|.+.|++++|.++++.+....|+++..+.++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 567777777777 1 7777778888888888877777776655555543
No 61
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.85 E-value=0.006 Score=40.87 Aligned_cols=98 Identities=14% Similarity=0.210 Sum_probs=71.5
Q ss_pred CCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH---HHHHHhh
Q 033770 9 GLRANEVTFVAVLTACARA-----RLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL---WSACKIH 80 (112)
Q Consensus 9 g~~p~~~t~~~li~~~~~~-----~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f---~~~~~~~ 80 (112)
+-.-|..+|..+|..|.+. |.++=....+.+|.+ +|+.-|..+|+.|++.+=+ |.+- -..+| |--| .
T Consensus 42 ~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~e-fgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~hy--p 116 (228)
T PF06239_consen 42 GQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDE-FGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMHY--P 116 (228)
T ss_pred hccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHH-cCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhccC--c
Confidence 3467899999999999854 778888888999996 9999999999999999987 4433 33444 3222 2
Q ss_pred CChhHHHHHHHHHHhcC-CCCCcchhhhhccc
Q 033770 81 GAVKLSHEVGKRLLELQ-PEHCRRYVVLSNVH 111 (112)
Q Consensus 81 g~~~~a~~~~~~m~~~~-~~~~~~~~~l~~~y 111 (112)
.+.+-|..++++|...+ -++..++.+|.+++
T Consensus 117 ~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iF 148 (228)
T PF06239_consen 117 RQQECAIDLLEQMENNGVMPDKETEQMLLNIF 148 (228)
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHh
Confidence 35677888999998744 23445566666554
No 62
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.84 E-value=0.0096 Score=43.92 Aligned_cols=83 Identities=23% Similarity=0.139 Sum_probs=66.0
Q ss_pred ccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHH
Q 033770 26 RARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSH 87 (112)
Q Consensus 26 ~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~ 87 (112)
..|..++|+..+..+.. . .| |+.-+....+-+.+.++..+|.+.+ | .++.+.|++.+|.
T Consensus 318 ~~~~~d~A~~~l~~L~~--~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIA--A-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHH--h-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence 56788888888888764 2 45 4444457778889999999999888 2 8888889999999
Q ss_pred HHHHHHHhcCCCCCcchhhhhccc
Q 033770 88 EVGKRLLELQPEHCRRYVVLSNVH 111 (112)
Q Consensus 88 ~~~~~m~~~~~~~~~~~~~l~~~y 111 (112)
.+++......|+++..|-+|...|
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay 418 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAY 418 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHH
Confidence 988888888898998888887665
No 63
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.67 E-value=0.0064 Score=44.61 Aligned_cols=56 Identities=5% Similarity=-0.021 Sum_probs=49.8
Q ss_pred hcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhc
Q 033770 7 EKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRA 63 (112)
Q Consensus 7 ~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 63 (112)
..|+-||.+|||.||+.+.+.|++..|.++...|.. .+...+..|+..-+.++.+.
T Consensus 131 ~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~l-Qe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 131 QYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMML-QEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHH-hhccCCchHHHHHHHHHHHh
Confidence 469999999999999999999999999999999886 57777888888888887777
No 64
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.65 E-value=0.04 Score=45.05 Aligned_cols=89 Identities=10% Similarity=-0.030 Sum_probs=70.7
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H---
Q 033770 11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W--- 74 (112)
Q Consensus 11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~--- 74 (112)
+++...+..+-..+.+.|+.++|...+++..+ . -+.+...+..+...|...|+.++|.+.+ +
T Consensus 600 p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~-~-~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~l 677 (1157)
T PRK11447 600 PPSTRIDLTLADWAQQRGDYAAARAAYQRVLT-R-EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRV 677 (1157)
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHH
Confidence 34555666777888899999999999999875 2 2236788889999999999999999998 1
Q ss_pred -HHHHhhCChhHHHHHHHHHHhcCCCCC
Q 033770 75 -SACKIHGAVKLSHEVGKRLLELQPEHC 101 (112)
Q Consensus 75 -~~~~~~g~~~~a~~~~~~m~~~~~~~~ 101 (112)
..+...|+.++|.++++.+.+..|+++
T Consensus 678 a~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 678 ALAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 666788999999999999887655443
No 65
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.63 E-value=0.012 Score=36.06 Aligned_cols=58 Identities=9% Similarity=0.048 Sum_probs=51.3
Q ss_pred cCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCC
Q 033770 8 KGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGL 65 (112)
Q Consensus 8 ~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 65 (112)
..+.|+..+..+++.+|+..+++..|+++.+...+.+++..+...|..|+...-...+
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 4578999999999999999999999999999999889998899999988887655444
No 66
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.60 E-value=0.017 Score=45.71 Aligned_cols=81 Identities=15% Similarity=0.030 Sum_probs=61.8
Q ss_pred hccCcHHHHHHHHHHhhhccCCCcCH--HHHHHHHHHHHhcCChhHHHHHH---------H--------HHHHhhCChhH
Q 033770 25 ARARLVELGLELFHSLLGEFEVVPIM--EHYGCVVDLLGRAGLLSEANEFL---------W--------SACKIHGAVKL 85 (112)
Q Consensus 25 ~~~~~~~~a~~~~~~m~~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~f---------~--------~~~~~~g~~~~ 85 (112)
.+.|+++.|+..|++..+ ..|+. ..+ .++..+...|+.++|...+ + ..+...|++++
T Consensus 45 ~r~Gd~~~Al~~L~qaL~---~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESK---AGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HhCCCHHHHHHHHHHHHh---hCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 467889999999988764 34543 233 8888888889999999987 1 46667799999
Q ss_pred HHHHHHHHHhcCCCCCcchhhhhc
Q 033770 86 SHEVGKRLLELQPEHCRRYVVLSN 109 (112)
Q Consensus 86 a~~~~~~m~~~~~~~~~~~~~l~~ 109 (112)
|.++++++.+..|+++..+..|..
T Consensus 121 Aiely~kaL~~dP~n~~~l~gLa~ 144 (822)
T PRK14574 121 ALALWQSSLKKDPTNPDLISGMIM 144 (822)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHH
Confidence 999999999888988766654443
No 67
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.59 E-value=0.024 Score=35.33 Aligned_cols=56 Identities=11% Similarity=-0.138 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770 52 HYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL 107 (112)
Q Consensus 52 ~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l 107 (112)
.+..+-..+.+.|++++|.+.| | ..+.+.|+.++|...|+...+.+|.++..+.-+
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~l 98 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQT 98 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 3556677889999999999999 3 678889999999999999999999887766544
No 68
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.52 E-value=0.0036 Score=30.97 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=29.3
Q ss_pred HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770 75 SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS 108 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~ 108 (112)
..+...|++++|++++++..+..|+++..+..|.
T Consensus 9 ~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 9 RAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 6778899999999999999999999987766654
No 69
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.52 E-value=0.072 Score=37.37 Aligned_cols=79 Identities=13% Similarity=0.051 Sum_probs=61.4
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH------------------H---HH
Q 033770 18 VAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL------------------W---SA 76 (112)
Q Consensus 18 ~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f------------------~---~~ 76 (112)
..+-..+...|++++|...+++... . -+.+...+..+-..|.+.|++++|.+.+ | ..
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~-~-~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~ 195 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALE-L-NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh-h-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence 3444567788999999999999875 2 2335667788888999999999999997 2 56
Q ss_pred HHhhCChhHHHHHHHHHHhcCC
Q 033770 77 CKIHGAVKLSHEVGKRLLELQP 98 (112)
Q Consensus 77 ~~~~g~~~~a~~~~~~m~~~~~ 98 (112)
+...|+.++|..++++.....|
T Consensus 196 ~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 196 YLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHCCCHHHHHHHHHHHhcccc
Confidence 6788999999999998865444
No 70
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.51 E-value=0.036 Score=36.45 Aligned_cols=80 Identities=11% Similarity=0.096 Sum_probs=59.9
Q ss_pred CcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HH-HHhhCC--hhHHH
Q 033770 28 RLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SA-CKIHGA--VKLSH 87 (112)
Q Consensus 28 ~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~-~~~~g~--~~~a~ 87 (112)
++.+++...++...+ .-+.|...|..|-..|...|++++|.+.| | .+ +...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 344555555555443 22348889999999999999999999999 2 33 356666 59999
Q ss_pred HHHHHHHhcCCCCCcchhhhhc
Q 033770 88 EVGKRLLELQPEHCRRYVVLSN 109 (112)
Q Consensus 88 ~~~~~m~~~~~~~~~~~~~l~~ 109 (112)
+++++..+.+|+++..+..|..
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~ 152 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLAS 152 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHH
Confidence 9999999999999887776654
No 71
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.51 E-value=0.021 Score=39.86 Aligned_cols=78 Identities=15% Similarity=0.140 Sum_probs=63.0
Q ss_pred hccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHH
Q 033770 25 ARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLS 86 (112)
Q Consensus 25 ~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a 86 (112)
.+.+++.+|...+.+.+. +.| |.+-|.-=-.+|++.|+++.|.+=. | .+|...|+.++|
T Consensus 92 m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 367888999999988874 455 6666677778899999999988876 3 677777899999
Q ss_pred HHHHHHHHhcCCCCCcchh
Q 033770 87 HEVGKRLLELQPEHCRRYV 105 (112)
Q Consensus 87 ~~~~~~m~~~~~~~~~~~~ 105 (112)
.+.|++..+++|++.++..
T Consensus 169 ~~aykKaLeldP~Ne~~K~ 187 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKS 187 (304)
T ss_pred HHHHHhhhccCCCcHHHHH
Confidence 9999999999999876543
No 72
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.46 E-value=0.02 Score=30.31 Aligned_cols=30 Identities=10% Similarity=0.055 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLG 42 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 42 (112)
+.-.+..+=..+.+.|++++|...|++...
T Consensus 30 ~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 30 NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566677777888899999999999998864
No 73
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.41 E-value=0.052 Score=33.64 Aligned_cols=72 Identities=13% Similarity=0.039 Sum_probs=47.1
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhccCCCcCH--HHHHHHHHHHHhcCChhHHHHHH-------H---------HHHHhhC
Q 033770 20 VLTACARARLVELGLELFHSLLGEFEVVPIM--EHYGCVVDLLGRAGLLSEANEFL-------W---------SACKIHG 81 (112)
Q Consensus 20 li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~f-------~---------~~~~~~g 81 (112)
+=..+...|++++|...|+.... ..-.|+. ...--|-..+...|++++|...+ | ..+.+.|
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~-~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALA-NAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh-hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCC
Confidence 33566677888888888887775 3422221 12234556677778888888877 2 7777778
Q ss_pred ChhHHHHHHHH
Q 033770 82 AVKLSHEVGKR 92 (112)
Q Consensus 82 ~~~~a~~~~~~ 92 (112)
+.++|...|+.
T Consensus 133 ~~~~A~~~y~~ 143 (145)
T PF09976_consen 133 DYDEARAAYQK 143 (145)
T ss_pred CHHHHHHHHHH
Confidence 88888777764
No 74
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.41 E-value=0.059 Score=36.91 Aligned_cols=78 Identities=10% Similarity=-0.011 Sum_probs=48.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHH
Q 033770 16 TFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACK 78 (112)
Q Consensus 16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~ 78 (112)
.-+.........|++..|...|.+..+ .=++|...||.+=-+|-+.|++++|..-+ . -.+.
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~ 179 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLL 179 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHH
Confidence 333456666666777777777766653 44556777777766777777776666665 0 3344
Q ss_pred hhCChhHHHHHHHHHHh
Q 033770 79 IHGAVKLSHEVGKRLLE 95 (112)
Q Consensus 79 ~~g~~~~a~~~~~~m~~ 95 (112)
-.|+.+.|+.++..-..
T Consensus 180 L~gd~~~A~~lll~a~l 196 (257)
T COG5010 180 LRGDLEDAETLLLPAYL 196 (257)
T ss_pred HcCCHHHHHHHHHHHHh
Confidence 55677777766666554
No 75
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.39 E-value=0.089 Score=36.26 Aligned_cols=86 Identities=10% Similarity=0.126 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCH----HHHHHHHHHHHhcCChhHHHHHH----------------
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIM----EHYGCVVDLLGRAGLLSEANEFL---------------- 73 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~f---------------- 73 (112)
...|...+.-..+.|++++|...|+.....+ |+. ..+--+-..|-..|++++|...|
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 4567777776677899999999999998632 432 45567778899999999999999
Q ss_pred H----HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770 74 W----SACKIHGAVKLSHEVGKRLLELQPEHCR 102 (112)
Q Consensus 74 ~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 102 (112)
| ..+...|+.+.|.+.++++.+.-|+...
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 1 5666889999999999999987786543
No 76
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.37 E-value=0.021 Score=30.55 Aligned_cols=56 Identities=20% Similarity=0.113 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcC-ChhHHHH
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAG-LLSEANE 71 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g-~~~~A~~ 71 (112)
+..+|..+=..+.+.|++++|+..|.+..+ . .| +...|.-+=.+|.+.| ++++|.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~-~--~p~~~~~~~~~g~~~~~~~~~~~~A~~ 59 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE-L--DPNNAEAYYNLGLAYMKLGKDYEEAIE 59 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH-H--STTHHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-c--CCCCHHHHHHHHHHHHHhCccHHHHHH
Confidence 345566666667777888888888887775 2 23 4444444444454444 3444444
No 77
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.33 E-value=0.11 Score=34.47 Aligned_cols=92 Identities=11% Similarity=0.023 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC-HHHHHHHHHHHHhcCChhHHHHHH----------------H-
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPI-MEHYGCVVDLLGRAGLLSEANEFL----------------W- 74 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~f----------------~- 74 (112)
....+-.+...+.+.|++++|...+++......-.|. ...+..+-..|-+.|++++|.+.+ |
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4556667777888999999999999998752111121 246677888999999999999999 1
Q ss_pred ---HHHHh--------hCChhHHHHHHHHHHhcCCCCCcch
Q 033770 75 ---SACKI--------HGAVKLSHEVGKRLLELQPEHCRRY 104 (112)
Q Consensus 75 ---~~~~~--------~g~~~~a~~~~~~m~~~~~~~~~~~ 104 (112)
..+.. .|+.+.|.+.++.+.+..|+++...
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 152 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAP 152 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHH
Confidence 22222 2678899999999998888875543
No 78
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.32 E-value=0.13 Score=32.52 Aligned_cols=59 Identities=12% Similarity=0.032 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc--CHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVP--IMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
...|..+...+...|++++|...|.+... ..-.| ...+|..+=..|.+.|++++|.+.+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~-l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~ 95 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMR-LEIDPYDRSYILYNIGLIHTSNGEHTKALEYY 95 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-ccccchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45567777777888999999999999874 22222 2357888888999999999999998
No 79
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.30 E-value=0.014 Score=31.55 Aligned_cols=62 Identities=21% Similarity=0.111 Sum_probs=36.3
Q ss_pred HHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhhCChhHHHHHHHHHHhcCCCC
Q 033770 22 TACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFLWSACKIHGAVKLSHEVGKRLLELQPEH 100 (112)
Q Consensus 22 ~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~g~~~~a~~~~~~m~~~~~~~ 100 (112)
..+.+.+++++|..+++++.. . .| ++..|...= ..+.+.|+++.|.+.++...+..|++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~-~--~p~~~~~~~~~a-----------------~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALE-L--DPDDPELWLQRA-----------------RCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHH-h--CcccchhhHHHH-----------------HHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 456777888888888888774 2 33 333333333 34455566666666666666656655
Q ss_pred Ccc
Q 033770 101 CRR 103 (112)
Q Consensus 101 ~~~ 103 (112)
+..
T Consensus 63 ~~~ 65 (73)
T PF13371_consen 63 PDA 65 (73)
T ss_pred HHH
Confidence 443
No 80
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=96.25 E-value=0.061 Score=38.96 Aligned_cols=87 Identities=10% Similarity=-0.047 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH--H--------------
Q 033770 11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL--W-------------- 74 (112)
Q Consensus 11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f--~-------------- 74 (112)
+.+......+..++...|+.++|..++++..+ ..||.. -.++.+....|+.+++.+.. |
T Consensus 260 ~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~l 334 (398)
T PRK10747 260 RHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTL 334 (398)
T ss_pred hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHH--HHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 34566666777777788888888888877653 233431 12334444557777777777 2
Q ss_pred -HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770 75 -SACKIHGAVKLSHEVGKRLLELQPEHCR 102 (112)
Q Consensus 75 -~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 102 (112)
..|.+.+++++|.+.|+...+..|++..
T Consensus 335 grl~~~~~~~~~A~~~le~al~~~P~~~~ 363 (398)
T PRK10747 335 GQLLMKHGEWQEASLAFRAALKQRPDAYD 363 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCHHH
Confidence 7778888899999999988887776544
No 81
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.25 E-value=0.072 Score=41.52 Aligned_cols=88 Identities=16% Similarity=0.109 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHH-HHHHHHHHhcCChhHHHHHH--------------H--
Q 033770 12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHY-GCVVDLLGRAGLLSEANEFL--------------W-- 74 (112)
Q Consensus 12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~f--------------~-- 74 (112)
.+.-.+-.|-..-.+.|..|+|..+++...+ +.||.... -.+...+.+.+++++|...+ .
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 3444444555555566666666666666542 34533332 45555566666666666655 1
Q ss_pred -HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770 75 -SACKIHGAVKLSHEVGKRLLELQPEHCR 102 (112)
Q Consensus 75 -~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 102 (112)
.++.+.|+.++|..+|++....+|+++.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~ 189 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFEN 189 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHH
Confidence 4555556666666666666554444433
No 82
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.23 E-value=0.21 Score=34.71 Aligned_cols=82 Identities=21% Similarity=0.094 Sum_probs=65.3
Q ss_pred CC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH---------------
Q 033770 11 RA-NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL--------------- 73 (112)
Q Consensus 11 ~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f--------------- 73 (112)
.| +...|+.+=..+.+.|++++|...|++..+ +.| +...|.-+-..+...|++++|.+.|
T Consensus 94 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~ 170 (296)
T PRK11189 94 RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE---LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL 170 (296)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 44 567888888999999999999999999874 345 5677777888889999999999998
Q ss_pred H-HHHHhhCChhHHHHHHHHHHh
Q 033770 74 W-SACKIHGAVKLSHEVGKRLLE 95 (112)
Q Consensus 74 ~-~~~~~~g~~~~a~~~~~~m~~ 95 (112)
| ......++.++|...+++...
T Consensus 171 ~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 171 WLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHccCCHHHHHHHHHHHHh
Confidence 2 233456789999999976543
No 83
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=96.20 E-value=0.11 Score=37.13 Aligned_cols=55 Identities=15% Similarity=0.092 Sum_probs=34.9
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhhccCCCcCH--HHHHHHHHHHHhcCChhHHHHHH
Q 033770 19 AVLTACARARLVELGLELFHSLLGEFEVVPIM--EHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 19 ~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~f 73 (112)
+|=+-|-+.|.+|.|+++++.+.+..+...+- ..--.|=.-|-.+|-+|.|+++|
T Consensus 74 tLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f 130 (389)
T COG2956 74 TLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIF 130 (389)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 45566777788888888888877532221111 11224555677888888888888
No 84
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.19 E-value=0.12 Score=37.73 Aligned_cols=89 Identities=12% Similarity=0.036 Sum_probs=68.9
Q ss_pred hHHHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH--------
Q 033770 2 VDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------- 73 (112)
Q Consensus 2 ~~~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------- 73 (112)
|+++.+.. |+... .+.+.+...++-.+|.++..+... ..+-|....+.-.+-+.+.|+.+.|.++.
T Consensus 192 le~L~~~~--pev~~--~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP 265 (395)
T PF09295_consen 192 LEKLRERD--PEVAV--LLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSP 265 (395)
T ss_pred HHHHHhcC--CcHHH--HHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 55555553 66443 477777777888899999888875 23336777777777889999999999998
Q ss_pred -----H----HHHHhhCChhHHHHHHHHHHhc
Q 033770 74 -----W----SACKIHGAVKLSHEVGKRLLEL 96 (112)
Q Consensus 74 -----~----~~~~~~g~~~~a~~~~~~m~~~ 96 (112)
| .+|.+.|+++.|+..++.+...
T Consensus 266 ~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 266 SEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 7 9999999999999999888643
No 85
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.17 E-value=0.022 Score=34.44 Aligned_cols=62 Identities=18% Similarity=0.288 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770 49 IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNV 110 (112)
Q Consensus 49 ~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~ 110 (112)
+......+...+.+.|++++|.+.| | ..+...|+.+.|...++...+..|+++..+..+..+
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 94 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAEC 94 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 3444567778889999999999999 2 677788999999999999988888887766655443
No 86
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=96.09 E-value=0.023 Score=40.40 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=55.0
Q ss_pred cCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH------------------H---HHHHhhCChhH
Q 033770 27 ARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL------------------W---SACKIHGAVKL 85 (112)
Q Consensus 27 ~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f------------------~---~~~~~~g~~~~ 85 (112)
+...|+|..+|-.|.+ +=+.+..+.-+|=+.|-+.|++|.|.++- + ..|-..|-+|+
T Consensus 48 s~Q~dKAvdlF~e~l~--~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQ--EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHh--cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3678999999999986 22234455557888999999999999997 1 88899999999
Q ss_pred HHHHHHHHHh
Q 033770 86 SHEVGKRLLE 95 (112)
Q Consensus 86 a~~~~~~m~~ 95 (112)
|+.+|.....
T Consensus 126 AE~~f~~L~d 135 (389)
T COG2956 126 AEDIFNQLVD 135 (389)
T ss_pred HHHHHHHHhc
Confidence 9999998875
No 87
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.09 E-value=0.066 Score=37.39 Aligned_cols=71 Identities=15% Similarity=0.103 Sum_probs=40.6
Q ss_pred cHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCCh-hHHHHHH
Q 033770 29 LVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAV-KLSHEVG 90 (112)
Q Consensus 29 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~-~~a~~~~ 90 (112)
.+.+|..+|+++.. .+.+++.+.|.+.-++...|++++|.+++ . ......|+. +.+.+.+
T Consensus 182 ~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 46677777777653 45566667777777777777777777776 1 222333444 4556666
Q ss_pred HHHHhcCCCCC
Q 033770 91 KRLLELQPEHC 101 (112)
Q Consensus 91 ~~m~~~~~~~~ 101 (112)
.+++...|.++
T Consensus 260 ~qL~~~~p~h~ 270 (290)
T PF04733_consen 260 SQLKQSNPNHP 270 (290)
T ss_dssp HHCHHHTTTSH
T ss_pred HHHHHhCCCCh
Confidence 66666556543
No 88
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.05 E-value=0.23 Score=34.09 Aligned_cols=95 Identities=17% Similarity=0.090 Sum_probs=68.7
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH----------H----
Q 033770 9 GLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL----------W---- 74 (112)
Q Consensus 9 g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f----------~---- 74 (112)
...|+......+=+++...|+-+.+..+...... .-.-|...-+..++...+.|++.+|...| |
T Consensus 61 ~~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~ 138 (257)
T COG5010 61 LRNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWN 138 (257)
T ss_pred hcCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhh
Confidence 3445333335555667777888877777766542 33346666677888888999999999888 3
Q ss_pred ---HHHHhhCChhHHHHHHHHHHhcCCCCCcchh
Q 033770 75 ---SACKIHGAVKLSHEVGKRLLELQPEHCRRYV 105 (112)
Q Consensus 75 ---~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 105 (112)
-+|.+.|+++.|..-+.+..++.|.++....
T Consensus 139 ~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~n 172 (257)
T COG5010 139 LLGAALDQLGRFDEARRAYRQALELAPNEPSIAN 172 (257)
T ss_pred HHHHHHHHccChhHHHHHHHHHHHhccCCchhhh
Confidence 7888889999999998888888887776544
No 89
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.02 E-value=0.021 Score=36.43 Aligned_cols=67 Identities=12% Similarity=0.042 Sum_probs=36.1
Q ss_pred ccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH--------------H---HHHHhhCChhHHH
Q 033770 26 RARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL--------------W---SACKIHGAVKLSH 87 (112)
Q Consensus 26 ~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f--------------~---~~~~~~g~~~~a~ 87 (112)
+.|++++|..+|+-... . -| +..-|--|=..+-..|++++|...+ + .++-..|+.+.|+
T Consensus 47 ~~G~l~~A~~~f~~L~~-~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 47 EVKEFAGAARLFQLLTI-Y--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred HCCCHHHHHHHHHHHHH-h--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 55666666666665543 2 23 2333334444455556666666665 1 5555556666666
Q ss_pred HHHHHHHh
Q 033770 88 EVGKRLLE 95 (112)
Q Consensus 88 ~~~~~m~~ 95 (112)
+.|+....
T Consensus 124 ~aF~~Ai~ 131 (157)
T PRK15363 124 KALKAVVR 131 (157)
T ss_pred HHHHHHHH
Confidence 66665554
No 90
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.01 E-value=0.052 Score=41.88 Aligned_cols=96 Identities=18% Similarity=0.309 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH------------------
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL------------------ 73 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f------------------ 73 (112)
-..+|+.+=+.+-..|++++|+.+++.+.+ +.| .+..|.-+-.++...|+.+.|...|
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aie---l~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIE---LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHh---cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchh
Confidence 456788888888888888889888888875 233 5667777777788888877777776
Q ss_pred -----------------------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhccc
Q 033770 74 -----------------------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNVH 111 (112)
Q Consensus 74 -----------------------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~y 111 (112)
| ..+...|+...|..-|++.++++|.-+..|.-|-+.|
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ 262 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVY 262 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHH
Confidence 4 5566667777788777777777777666665554443
No 91
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=95.96 E-value=0.075 Score=39.95 Aligned_cols=94 Identities=14% Similarity=0.066 Sum_probs=70.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhccC--CCcC----HHHHHHHHHHHHhcCChhHHHHHH-----------------
Q 033770 17 FVAVLTACARARLVELGLELFHSLLGEFE--VVPI----MEHYGCVVDLLGRAGLLSEANEFL----------------- 73 (112)
Q Consensus 17 ~~~li~~~~~~~~~~~a~~~~~~m~~~~g--~~p~----~~~~~~li~~~~~~g~~~~A~~~f----------------- 73 (112)
++.+...|+..+.++.|..++....+-.- +.++ ..+++-|=..|-+.|++++|.+++
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 45677778888999999888876553111 2233 367889999999999999999999
Q ss_pred -----H---HHHHhhCChhHHHHHHHHHH----hcCCCCCcchhhhhcc
Q 033770 74 -----W---SACKIHGAVKLSHEVGKRLL----ELQPEHCRRYVVLSNV 110 (112)
Q Consensus 74 -----~---~~~~~~g~~~~a~~~~~~m~----~~~~~~~~~~~~l~~~ 110 (112)
| ..|.+.+....|.++|.+.. ..+|+.|+....+.|+
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL 456 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNL 456 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHH
Confidence 4 78888889999999998876 3677777755544443
No 92
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.90 E-value=0.015 Score=44.34 Aligned_cols=87 Identities=9% Similarity=0.138 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W---- 74 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~---- 74 (112)
...||.++=+.|+-.++.+.|+..|++..+ +.| ..++|+.+=+=+....++|+|++-| |
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQ---ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG 496 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQ---LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLG 496 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhc---cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhh
Confidence 457888888888999999999999988764 445 5677777777777778888888888 4
Q ss_pred HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770 75 SACKIHGAVKLSHEVGKRLLELQPEHCR 102 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 102 (112)
..|.+.++.+.|+--|++..+.+|.+..
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~~INP~nsv 524 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAVEINPSNSV 524 (638)
T ss_pred hheeccchhhHHHHHHHhhhcCCccchh
Confidence 5666677777777777777766665544
No 93
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.81 E-value=0.098 Score=40.47 Aligned_cols=92 Identities=16% Similarity=0.248 Sum_probs=62.1
Q ss_pred CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH---------H----
Q 033770 10 LRAN-EVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL---------W---- 74 (112)
Q Consensus 10 ~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f---------~---- 74 (112)
++|+ ...||.|-.|.-..|++.+|.+.+.+..+ + .| -...-+-|-..|.+-|.+++|.++| +
T Consensus 315 ~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~-l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~ 391 (966)
T KOG4626|consen 315 LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR-L--CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAH 391 (966)
T ss_pred cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH-h--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhh
Confidence 3443 34677777777777777777777776653 2 22 3345566667777777777777776 1
Q ss_pred ----HHHHhhCChhHHHHHHHHHHhcCCCCCcch
Q 033770 75 ----SACKIHGAVKLSHEVGKRLLELQPEHCRRY 104 (112)
Q Consensus 75 ----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 104 (112)
..|.+.|+.++|...+++..+.+|+-...+
T Consensus 392 nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~ 425 (966)
T KOG4626|consen 392 NNLASIYKQQGNLDDAIMCYKEALRIKPTFADAL 425 (966)
T ss_pred hhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHH
Confidence 666777888888888888888777644333
No 94
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=95.76 E-value=0.079 Score=28.42 Aligned_cols=59 Identities=19% Similarity=0.066 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
+...+..+-..+...+++++|...++.... . ...+..++..+...+...|+.++|.+.+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 91 (100)
T cd00189 33 NADAYYNLAAAYYKLGKYEEALEDYEKALE-L-DPDNAKAYYNLGLAYYKLGKYEEALEAY 91 (100)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-CCcchhHHHHHHHHHHHHHhHHHHHHHH
Confidence 446777788888899999999999998774 2 2335568888999999999999998875
No 95
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.71 E-value=0.019 Score=32.16 Aligned_cols=58 Identities=17% Similarity=0.061 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
+...+-.+-.++.+.|++++|..+++.... +.. +....-.+-.+|.+.|++++|.+.|
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~~~~--~~~-~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQKLKL--DPS-NPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHCHTH--HHC-HHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHhCC--CCC-CHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 455555688999999999999999988322 221 2233445577899999999999875
No 96
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.66 E-value=0.085 Score=32.52 Aligned_cols=54 Identities=24% Similarity=0.209 Sum_probs=38.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 17 FVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 17 ~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
...++..+...|+.++|.++...... ..| |-..|-.+|.+|.+.|+..+|.+.|
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~---~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y 119 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALA---LDPYDEEAYRLLMRALAAQGRRAEALRVY 119 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH---HSTT-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 34455666678888888888888774 223 6778888888888888888888886
No 97
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.63 E-value=0.058 Score=29.54 Aligned_cols=59 Identities=14% Similarity=0.118 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhc---cC-CCcC-HHHHHHHHHHHHhcCChhHHHHHH
Q 033770 15 VTFVAVLTACARARLVELGLELFHSLLGE---FE-VVPI-MEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~---~g-~~p~-~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
.+|+.+=..+...|++++|+..+++...- .| -.|+ ..+++-|-..|.+.|++++|++.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 69 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYY 69 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 46778888889999999999999887741 11 1122 445555666666666666666654
No 98
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.60 E-value=0.12 Score=37.56 Aligned_cols=79 Identities=16% Similarity=0.081 Sum_probs=63.3
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHH-HHHHHHHhcCChhHHHHHH---------H-------HHHHhhCC
Q 033770 20 VLTACARARLVELGLELFHSLLGEFEVVPIMEHYG-CVVDLLGRAGLLSEANEFL---------W-------SACKIHGA 82 (112)
Q Consensus 20 li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~-~li~~~~~~g~~~~A~~~f---------~-------~~~~~~g~ 82 (112)
+-.|.+..|...+|+++|-++.. ..++ |.++|. .|-+.|.++|.++.|.+++ + ..|-+.+.
T Consensus 399 ~AQAk~atgny~eaEelf~~is~-~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~e 476 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISG-PEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANE 476 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcC-hhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 44566677889999999988764 3443 667775 5667899999999999999 1 77778899
Q ss_pred hhHHHHHHHHHHhcCCCC
Q 033770 83 VKLSHEVGKRLLELQPEH 100 (112)
Q Consensus 83 ~~~a~~~~~~m~~~~~~~ 100 (112)
+--|-+.|+++..++|+.
T Consensus 477 FyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 477 FYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHHhhhHHHccCCCc
Confidence 999999999999888753
No 99
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=95.51 E-value=0.2 Score=36.32 Aligned_cols=87 Identities=5% Similarity=-0.029 Sum_probs=47.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------H-------HHHHhhCC
Q 033770 17 FVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------W-------SACKIHGA 82 (112)
Q Consensus 17 ~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------~-------~~~~~~g~ 82 (112)
|..++..-....+.+...++++...+ ..+.++....++..++.+.|+.++|.+++ | .+....++
T Consensus 232 ~~~l~~~~~~~~~~~~l~~~w~~lp~--~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~ 309 (398)
T PRK10747 232 WIGLMDQAMADQGSEGLKRWWKNQSR--KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNN 309 (398)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhCCH--HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCC
Confidence 44444444444455555555555543 22335556666666666666666666666 1 22223456
Q ss_pred hhHHHHHHHHHHhcCCCCCcchh
Q 033770 83 VKLSHEVGKRLLELQPEHCRRYV 105 (112)
Q Consensus 83 ~~~a~~~~~~m~~~~~~~~~~~~ 105 (112)
.+++.+..+...+..|+++....
T Consensus 310 ~~~al~~~e~~lk~~P~~~~l~l 332 (398)
T PRK10747 310 PEQLEKVLRQQIKQHGDTPLLWS 332 (398)
T ss_pred hHHHHHHHHHHHhhCCCCHHHHH
Confidence 66666666666666666655443
No 100
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.44 E-value=0.17 Score=40.10 Aligned_cols=66 Identities=23% Similarity=0.302 Sum_probs=55.5
Q ss_pred CCcCHHHHHHHHHHHHhcCChhHHHHHH--------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770 46 VVPIMEHYGCVVDLLGRAGLLSEANEFL--------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL 107 (112)
Q Consensus 46 ~~p~~~~~~~li~~~~~~g~~~~A~~~f--------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l 107 (112)
+.-++..|--+.++|-+.|++.+|.++| | ++|...|..++|.+.++.+....|++...-+.|
T Consensus 410 ~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~L 489 (895)
T KOG2076|consen 410 VSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITL 489 (895)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhH
Confidence 3337777888999999999999999999 5 888888999999999999999999888877777
Q ss_pred hccc
Q 033770 108 SNVH 111 (112)
Q Consensus 108 ~~~y 111 (112)
+.+|
T Consensus 490 asl~ 493 (895)
T KOG2076|consen 490 ASLY 493 (895)
T ss_pred HHHH
Confidence 6654
No 101
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.43 E-value=0.18 Score=40.01 Aligned_cols=75 Identities=16% Similarity=0.227 Sum_probs=56.3
Q ss_pred HHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhH
Q 033770 23 ACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKL 85 (112)
Q Consensus 23 ~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~ 85 (112)
.+++ |++++|.+++.+.++ .-+-....|-+|=..|-..|+.+++...+ | .-..+.|++++
T Consensus 149 lfar-g~~eeA~~i~~EvIk--qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 149 LFAR-GDLEEAEEILMEVIK--QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHh-CCHHHHHHHHHHHHH--hCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 3444 999999999999885 34447788999999999999999998887 4 44455666777
Q ss_pred HHHHHHHHHhcCCCC
Q 033770 86 SHEVGKRLLELQPEH 100 (112)
Q Consensus 86 a~~~~~~m~~~~~~~ 100 (112)
|.-.|.+..+..|++
T Consensus 226 A~~cy~rAI~~~p~n 240 (895)
T KOG2076|consen 226 ARYCYSRAIQANPSN 240 (895)
T ss_pred HHHHHHHHHhcCCcc
Confidence 777777776666655
No 102
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.39 E-value=0.36 Score=33.45 Aligned_cols=84 Identities=8% Similarity=0.089 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HH
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SA 76 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~ 76 (112)
+.+|..+++..-+.+.++.|..+|.+..+...+..++....++|.-+ ..++.+.|.++| | .-
T Consensus 1 t~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 1 TLVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 35789999999999999999999999986444566777767777544 346666699998 4 66
Q ss_pred HHhhCChhHHHHHHHHHHhcCC
Q 033770 77 CKIHGAVKLSHEVGKRLLELQP 98 (112)
Q Consensus 77 ~~~~g~~~~a~~~~~~m~~~~~ 98 (112)
....++.+.|..+|+.....-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~ 101 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLP 101 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSS
T ss_pred HHHhCcHHHHHHHHHHHHHhcC
Confidence 6778999999999999875433
No 103
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.36 E-value=0.39 Score=32.67 Aligned_cols=88 Identities=18% Similarity=0.133 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH---------------H---
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL---------------W--- 74 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f---------------~--- 74 (112)
.-+|..+=..|.+.|..+.|.+-|++..+ +.| +-..-|=-=.-+|..|++++|...| |
T Consensus 69 ~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~ 145 (250)
T COG3063 69 YLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENL 145 (250)
T ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhh
Confidence 34566666667777777777777776553 233 2222222222357777777777777 3
Q ss_pred -HHHHhhCChhHHHHHHHHHHhcCCCCCcch
Q 033770 75 -SACKIHGAVKLSHEVGKRLLELQPEHCRRY 104 (112)
Q Consensus 75 -~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 104 (112)
-+..+.|+++.|+..++.-.+.+|+.+...
T Consensus 146 G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~ 176 (250)
T COG3063 146 GLCALKAGQFDQAEEYLKRALELDPQFPPAL 176 (250)
T ss_pred HHHHhhcCCchhHHHHHHHHHHhCcCCChHH
Confidence 233456888888888888888777765543
No 104
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.29 E-value=0.3 Score=31.19 Aligned_cols=58 Identities=9% Similarity=0.036 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhh
Q 033770 49 IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVV 106 (112)
Q Consensus 49 ~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 106 (112)
+....-++=..+...|++++|.++| | .+|-..|++.+|...+.....++|++|.++.-
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ 108 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 3444445556678999999999999 4 66777899999999999999999998876543
No 105
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.28 E-value=0.12 Score=28.24 Aligned_cols=46 Identities=15% Similarity=0.199 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHH--------------------H----HHHHhhCChhHHHHHHHHHHh
Q 033770 50 MEHYGCVVDLLGRAGLLSEANEFL--------------------W----SACKIHGAVKLSHEVGKRLLE 95 (112)
Q Consensus 50 ~~~~~~li~~~~~~g~~~~A~~~f--------------------~----~~~~~~g~~~~a~~~~~~m~~ 95 (112)
..+|+.+-..|.+.|++++|++.| + ..+...|+.++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356788888999999999999999 1 778888999999999988764
No 106
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=95.24 E-value=0.23 Score=34.71 Aligned_cols=28 Identities=18% Similarity=0.124 Sum_probs=15.6
Q ss_pred HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770 75 SACKIHGAVKLSHEVGKRLLELQPEHCR 102 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 102 (112)
.+....|++++|++++++..+.+|.++.
T Consensus 209 ~~~l~~~~~~eAe~~L~~al~~~~~~~d 236 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEALEKDPNDPD 236 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHHCCC-CCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhccCCHH
Confidence 4445566777777776666555555444
No 107
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.042 Score=41.48 Aligned_cols=101 Identities=10% Similarity=0.057 Sum_probs=69.2
Q ss_pred cCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhh---ccC--CCcCHHHHHHHHHHHHhcCChhHHHHHH--------
Q 033770 8 KGLRAN-EVTFVAVLTACARARLVELGLELFHSLLG---EFE--VVPIMEHYGCVVDLLGRAGLLSEANEFL-------- 73 (112)
Q Consensus 8 ~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~---~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~f-------- 73 (112)
.++-|+ ....+-+=-...+.+.+.+|..+|+.-.. +.+ ......+++-|=++|.+++.+++|...+
T Consensus 407 ~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~ 486 (611)
T KOG1173|consen 407 LAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP 486 (611)
T ss_pred HhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 455553 33444333333457888999998887662 001 1125566777888889999999999988
Q ss_pred --H-------HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770 74 --W-------SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS 108 (112)
Q Consensus 74 --~-------~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~ 108 (112)
| -.|...|+++.|..-|++...+.|++...-.+|.
T Consensus 487 k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 487 KDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred CchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 3 3456678999999999999888898866655554
No 108
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=95.15 E-value=0.15 Score=30.29 Aligned_cols=41 Identities=17% Similarity=0.179 Sum_probs=22.9
Q ss_pred HHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 32 LGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 32 ~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
+..+-+..+-. +.+.|++.+..+.++++-|..++.-|.++|
T Consensus 28 e~rrglN~l~~-~DlVP~P~ii~aALrAcRRvND~a~AVR~l 68 (108)
T PF02284_consen 28 ELRRGLNNLFG-YDLVPEPKIIEAALRACRRVNDFALAVRIL 68 (108)
T ss_dssp HHHHHHHHHTT-SSB---HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHhc-cccCCChHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34444444444 566677777777777777777777777766
No 109
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.95 E-value=0.35 Score=34.81 Aligned_cols=81 Identities=12% Similarity=0.087 Sum_probs=58.4
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH------------H-----HHHHhhC
Q 033770 19 AVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL------------W-----SACKIHG 81 (112)
Q Consensus 19 ~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f------------~-----~~~~~~g 81 (112)
-+=++|-+.|...+|..-++.-.. -.|-+.||-.|-+.|.+..+.+.|..+| + +.+-..+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~---q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLT---QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhh---cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 455667777888888877766442 3466778888888888888888888888 1 5555567
Q ss_pred ChhHHHHHHHHHHhcCCCCCc
Q 033770 82 AVKLSHEVGKRLLELQPEHCR 102 (112)
Q Consensus 82 ~~~~a~~~~~~m~~~~~~~~~ 102 (112)
+.++|.++++...+.+|.++.
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvE 325 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVE 325 (478)
T ss_pred hHHHHHHHHHHHHhcCCccce
Confidence 777888888877777776544
No 110
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=94.93 E-value=0.21 Score=26.48 Aligned_cols=50 Identities=22% Similarity=0.199 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhC-ChhHHHHHHHHHHhcCC
Q 033770 49 IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHG-AVKLSHEVGKRLLELQP 98 (112)
Q Consensus 49 ~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g-~~~~a~~~~~~m~~~~~ 98 (112)
+..+|..+=..+.+.|++++|.+.| | .++...| +.++|.+.+++..+++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567777888899999999999999 3 7778888 79999999999988776
No 111
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=94.93 E-value=0.23 Score=39.80 Aligned_cols=100 Identities=12% Similarity=0.037 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc--CHHHHHHHHHHHHhcCChhHHHHHHH---------------
Q 033770 12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP--IMEHYGCVVDLLGRAGLLSEANEFLW--------------- 74 (112)
Q Consensus 12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~f~--------------- 74 (112)
-|.+..+.|=+.+.-.|++..++.+-+.+.. .-..- -..+|--+=++|=..|++++|.+.++
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~-~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIK-NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 3667777888888999999999999988885 33221 22345567788889999999999981
Q ss_pred ---HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcccC
Q 033770 75 ---SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNVHT 112 (112)
Q Consensus 75 ---~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~ya 112 (112)
..+...|+.+.+...|+.+.+..|++..+..+|-.+|+
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya 387 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYA 387 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHH
Confidence 77888999999999999999989999888888887775
No 112
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.89 E-value=0.13 Score=27.63 Aligned_cols=30 Identities=13% Similarity=0.026 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLG 42 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 42 (112)
+...|...=..+.+.|++++|...+++...
T Consensus 28 ~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 28 DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 555566666778899999999999999875
No 113
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.89 E-value=0.22 Score=37.23 Aligned_cols=58 Identities=21% Similarity=0.189 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhccC-CCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLGEFE-VVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
+..|...|++--+..-++.|..+|-+.++ .| +.+++.+++++|.-|+ .|+..-|.++|
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk-~~~~~h~vyi~~A~~E~~~-~~d~~ta~~if 455 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRK-EGIVGHHVYIYCAFIEYYA-TGDRATAYNIF 455 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhc-cCCCCcceeeeHHHHHHHh-cCCcchHHHHH
Confidence 46778888888888999999999999997 68 6789999999999886 47778899998
No 114
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=94.83 E-value=0.62 Score=36.52 Aligned_cols=85 Identities=13% Similarity=0.094 Sum_probs=68.4
Q ss_pred CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H
Q 033770 10 LRAN-EVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W 74 (112)
Q Consensus 10 ~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~ 74 (112)
+.|| .-....+...+.+.+.+++|+...++... ..| +....+.+=.++.+.|++++|.++| |
T Consensus 115 ~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~ 191 (694)
T PRK15179 115 RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGY 191 (694)
T ss_pred hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHH
Confidence 3454 44566788889999999999999998764 345 5556678888899999999999999 2
Q ss_pred ----HHHHhhCChhHHHHHHHHHHhcC
Q 033770 75 ----SACKIHGAVKLSHEVGKRLLELQ 97 (112)
Q Consensus 75 ----~~~~~~g~~~~a~~~~~~m~~~~ 97 (112)
..+...|+.++|...|+......
T Consensus 192 ~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 192 VGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 77888899999999999987633
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=94.70 E-value=0.15 Score=39.73 Aligned_cols=94 Identities=18% Similarity=0.143 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH---------------------
Q 033770 15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL--------------------- 73 (112)
Q Consensus 15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f--------------------- 73 (112)
..|.-+|-.|...|+..+|..+..+-.+ -.||..-|..+-+..-.-.-+++|.+++
T Consensus 425 emw~~vi~CY~~lg~~~kaeei~~q~le---k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~f 501 (777)
T KOG1128|consen 425 EMWDPVILCYLLLGQHGKAEEINRQELE---KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDF 501 (777)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHhc---CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhH
Confidence 3456667777777777777766666542 2466666666666555555555555555
Q ss_pred --------------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhccc
Q 033770 74 --------------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNVH 111 (112)
Q Consensus 74 --------------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~y 111 (112)
| .+.-+.+++..|...|.....++|++...++-|+..|
T Consensus 502 s~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ay 563 (777)
T KOG1128|consen 502 SEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAY 563 (777)
T ss_pred HHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHH
Confidence 4 3334567788888888888888887776666655443
No 116
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=94.65 E-value=0.78 Score=34.76 Aligned_cols=82 Identities=17% Similarity=0.186 Sum_probs=58.6
Q ss_pred CCCHHHHHH--HHHHHhccCcHHHHHHHHHHhhhccCCCcC-HHHHHHHHHHHHhcCChhHHHHHH-----------H--
Q 033770 11 RANEVTFVA--VLTACARARLVELGLELFHSLLGEFEVVPI-MEHYGCVVDLLGRAGLLSEANEFL-----------W-- 74 (112)
Q Consensus 11 ~p~~~t~~~--li~~~~~~~~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~f-----------~-- 74 (112)
.|....|+. +=..|-..|++++|+.+.++.+. ..|+ +.-|.+--+.|-+.|++++|.+.. |
T Consensus 189 ~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiN 265 (517)
T PF12569_consen 189 PPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYIN 265 (517)
T ss_pred CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHH
Confidence 566655543 44556688999999999998775 2464 667778888899999999999888 2
Q ss_pred ----HHHHhhCChhHHHHHHHHHHh
Q 033770 75 ----SACKIHGAVKLSHEVGKRLLE 95 (112)
Q Consensus 75 ----~~~~~~g~~~~a~~~~~~m~~ 95 (112)
..+.++|+.++|++++....+
T Consensus 266 sK~aKy~LRa~~~e~A~~~~~~Ftr 290 (517)
T PF12569_consen 266 SKCAKYLLRAGRIEEAEKTASLFTR 290 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhcC
Confidence 455566666666666665543
No 117
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=94.64 E-value=0.59 Score=28.84 Aligned_cols=79 Identities=13% Similarity=0.007 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-----------------H-
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-----------------W- 74 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-----------------~- 74 (112)
...|..++.+.. .++.+.+...++.+..+++-.| .....=.+-+.+...|++++|.+.| +
T Consensus 12 ~~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 12 SALYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 456788888885 7889999999999986422221 1122223457788999999999999 1
Q ss_pred --HHHHhhCChhHHHHHHHHH
Q 033770 75 --SACKIHGAVKLSHEVGKRL 93 (112)
Q Consensus 75 --~~~~~~g~~~~a~~~~~~m 93 (112)
..+...|++++|...++..
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~ 111 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQI 111 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhc
Confidence 7777889999999998663
No 118
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=94.63 E-value=0.65 Score=33.74 Aligned_cols=27 Identities=7% Similarity=-0.192 Sum_probs=20.7
Q ss_pred HHHHhhCChhHHHHHHHHHHhcCCCCC
Q 033770 75 SACKIHGAVKLSHEVGKRLLELQPEHC 101 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~ 101 (112)
..+...|+.+.|.++.++..+..|++.
T Consensus 271 ~~l~~~g~~~~A~~~l~~~l~~~pd~~ 297 (409)
T TIGR00540 271 EHLIDCDDHDSAQEIIFDGLKKLGDDR 297 (409)
T ss_pred HHHHHCCChHHHHHHHHHHHhhCCCcc
Confidence 666777888888888888887777665
No 119
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=94.62 E-value=0.042 Score=43.61 Aligned_cols=40 Identities=18% Similarity=0.004 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHH
Q 033770 11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIME 51 (112)
Q Consensus 11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~ 51 (112)
.||..+|.+++++-.-+|+++.|..+...|++ .|+..+.+
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke-~gfpir~H 240 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKE-KGFPIRAH 240 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHH-cCCCcccc
Confidence 37777777777777777777777777777775 46555544
No 120
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=0.16 Score=38.16 Aligned_cols=82 Identities=15% Similarity=0.061 Sum_probs=63.8
Q ss_pred HHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH---------H-HHHHh-------hCChhH
Q 033770 23 ACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL---------W-SACKI-------HGAVKL 85 (112)
Q Consensus 23 ~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f---------~-~~~~~-------~g~~~~ 85 (112)
+-+.+|++++|..+|-..+. .. ++|.+-|+-=..+|+..|++++|.+=- | .+|.+ .|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~-l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIM-LS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHc-cC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 45678999999999988774 22 348888988899999999999887655 7 44444 478999
Q ss_pred HHHHHHHHHhcCCCCCcchhh
Q 033770 86 SHEVGKRLLELQPEHCRRYVV 106 (112)
Q Consensus 86 a~~~~~~m~~~~~~~~~~~~~ 106 (112)
|...+.+=.+.+|++...+.=
T Consensus 89 A~~ay~~GL~~d~~n~~L~~g 109 (539)
T KOG0548|consen 89 AILAYSEGLEKDPSNKQLKTG 109 (539)
T ss_pred HHHHHHHHhhcCCchHHHHHh
Confidence 999999988888887654443
No 121
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=94.43 E-value=0.26 Score=29.04 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=24.8
Q ss_pred HHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 32 LGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 32 ~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
+..+-+..+-. +.+.|++...++-++++-|..++.-|.++|
T Consensus 25 e~rr~mN~l~~-~DlVP~P~ii~aaLrAcRRvND~alAVR~l 65 (103)
T cd00923 25 ELRRGLNNLFG-YDLVPEPKVIEAALRACRRVNDFALAVRIL 65 (103)
T ss_pred HHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44444444444 556666666666666666666666666665
No 122
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.36 E-value=0.26 Score=40.25 Aligned_cols=59 Identities=14% Similarity=0.188 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
-|...|.-+|+..++.|.+++-.+.+.+.++ ..-.|.+. +.||-+|++.+++.+-++++
T Consensus 1131 dDps~y~eVi~~a~~~~~~edLv~yL~MaRk-k~~E~~id--~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1131 DDPSNYLEVIDVASRTGKYEDLVKYLLMARK-KVREPYID--SELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH-hhcCccch--HHHHHHHHHhchHHHHHHHh
Confidence 3677899999999999999999998877665 55666554 57999999999999999888
No 123
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.35 E-value=0.75 Score=34.62 Aligned_cols=92 Identities=10% Similarity=0.125 Sum_probs=49.7
Q ss_pred cCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccC-CCcCHHHHHHHHHHHHhcCChhHHHHHH------------
Q 033770 8 KGLRA-NEVTFVAVLTACARARLVELGLELFHSLLGEFE-VVPIMEHYGCVVDLLGRAGLLSEANEFL------------ 73 (112)
Q Consensus 8 ~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~f------------ 73 (112)
..+-| |....+-|-.-|-+.|+-..|.+.+-.- +- ++-++.+..=|-.-|....-+++|..+|
T Consensus 585 ~slip~dp~ilskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 585 NSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred cccCCCCHHHHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 33333 4445555556666666666666655432 22 2224444444444455555556666666
Q ss_pred H-----HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770 74 W-----SACKIHGAVKLSHEVGKRLLELQPEHCR 102 (112)
Q Consensus 74 ~-----~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 102 (112)
| +++.+.|+..+|..+++++-+.-|.+..
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrkfpedld 695 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLD 695 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCccchH
Confidence 5 5556666666666666666554454433
No 124
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.34 E-value=0.23 Score=37.27 Aligned_cols=92 Identities=13% Similarity=0.200 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------------
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL------------------- 73 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f------------------- 73 (112)
+...|--+=.+.-+.+.+++++..|+..++ .++-.+..||..-..+...+++++|.+.+
T Consensus 427 ~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~p 504 (606)
T KOG0547|consen 427 NAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAP 504 (606)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchh
Confidence 445555555555577888999999999875 67667888888888888999999999988
Q ss_pred H-----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhh
Q 033770 74 W-----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVV 106 (112)
Q Consensus 74 ~-----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 106 (112)
+ -.+-..+++..|..++++..+++|...-.|..
T Consensus 505 lV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~t 542 (606)
T KOG0547|consen 505 LVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYET 542 (606)
T ss_pred hhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHH
Confidence 0 11112367777777777777777754444433
No 125
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=94.28 E-value=0.36 Score=27.96 Aligned_cols=50 Identities=18% Similarity=0.171 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHH------------------H--HHHHhhCChhHHHHHHHHHHhcCCCCC
Q 033770 52 HYGCVVDLLGRAGLLSEANEFL------------------W--SACKIHGAVKLSHEVGKRLLELQPEHC 101 (112)
Q Consensus 52 ~~~~li~~~~~~g~~~~A~~~f------------------~--~~~~~~g~~~~a~~~~~~m~~~~~~~~ 101 (112)
++-.+...+.+.|++++|.+.| + ..+.+.|+++.|...++.+....|+++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP 73 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC
Confidence 4556677788889999998888 1 777888999999999999998777654
No 126
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=94.16 E-value=0.46 Score=33.30 Aligned_cols=44 Identities=18% Similarity=0.171 Sum_probs=26.3
Q ss_pred HHHHHHHhcCChhHHHHHH-----------H------HHHHhhCChhHHHHHHHHHHhcCC
Q 033770 55 CVVDLLGRAGLLSEANEFL-----------W------SACKIHGAVKLSHEVGKRLLELQP 98 (112)
Q Consensus 55 ~li~~~~~~g~~~~A~~~f-----------~------~~~~~~g~~~~a~~~~~~m~~~~~ 98 (112)
.+-..+...|++++|.+.+ | ..+...|++++|...+++.....|
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD 179 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence 4444556666666666666 1 555566666666666666655444
No 127
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=94.08 E-value=0.39 Score=34.90 Aligned_cols=65 Identities=17% Similarity=0.030 Sum_probs=37.1
Q ss_pred cCcHHHHHHHHHHhhhccCCCcCH---HHHHHHHHHHHhcCChhHHHHHH--------------H----HHHHhhCChhH
Q 033770 27 ARLVELGLELFHSLLGEFEVVPIM---EHYGCVVDLLGRAGLLSEANEFL--------------W----SACKIHGAVKL 85 (112)
Q Consensus 27 ~~~~~~a~~~~~~m~~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~f--------------~----~~~~~~g~~~~ 85 (112)
.++.+.+...+++..+. .|+. ....++=..+.+.|++++|.+.| + ..+.+.|+.++
T Consensus 312 ~~~~~~~~~~~e~~lk~---~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~ 388 (409)
T TIGR00540 312 PEDNEKLEKLIEKQAKN---VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAE 388 (409)
T ss_pred CCChHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHH
Confidence 45556666666555431 2332 23345556666667777666666 1 55556666666
Q ss_pred HHHHHHHHH
Q 033770 86 SHEVGKRLL 94 (112)
Q Consensus 86 a~~~~~~m~ 94 (112)
|.+++++-.
T Consensus 389 A~~~~~~~l 397 (409)
T TIGR00540 389 AAAMRQDSL 397 (409)
T ss_pred HHHHHHHHH
Confidence 666666653
No 128
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=93.98 E-value=0.81 Score=27.81 Aligned_cols=50 Identities=18% Similarity=0.096 Sum_probs=29.7
Q ss_pred HHhccCcHHHHHHHHHHhhhccCCCcC--HHHHHHHHHHHHhcCChhHHHHHH
Q 033770 23 ACARARLVELGLELFHSLLGEFEVVPI--MEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 23 ~~~~~~~~~~a~~~~~~m~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
++-..|+.++|..++++-.. .|.... ...+--+-+.|-..|++++|..+|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~-~gL~~~~~~~a~i~lastlr~LG~~deA~~~L 61 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALA-AGLSGADRRRALIQLASTLRNLGRYDEALALL 61 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34456777777777777765 565443 222333445566667777777776
No 129
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=93.92 E-value=0.73 Score=32.72 Aligned_cols=73 Identities=14% Similarity=-0.002 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH----H----HHHHhhCC
Q 033770 11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL----W----SACKIHGA 82 (112)
Q Consensus 11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f----~----~~~~~~g~ 82 (112)
-||..-|-..|.++++.+++++-..+... + -.++.|--.+..+.+.|+..+|.+++ . ..|.+.|+
T Consensus 205 v~dkrfw~lki~aLa~~~~w~eL~~fa~s-k------KsPIGyepFv~~~~~~~~~~eA~~yI~k~~~~~rv~~y~~~~~ 277 (319)
T PF04840_consen 205 VPDKRFWWLKIKALAENKDWDELEKFAKS-K------KSPIGYEPFVEACLKYGNKKEASKYIPKIPDEERVEMYLKCGD 277 (319)
T ss_pred CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-C------CCCCChHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHCCC
Confidence 48888888999999999999877765432 1 24588889999999999999999988 1 66677777
Q ss_pred hhHHHHHH
Q 033770 83 VKLSHEVG 90 (112)
Q Consensus 83 ~~~a~~~~ 90 (112)
+.+|.+..
T Consensus 278 ~~~A~~~A 285 (319)
T PF04840_consen 278 YKEAAQEA 285 (319)
T ss_pred HHHHHHHH
Confidence 77776553
No 130
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.91 E-value=0.47 Score=35.23 Aligned_cols=60 Identities=15% Similarity=-0.023 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCH----HHHHHHHHHHHhcCChhHHHHHH
Q 033770 11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIM----EHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~f 73 (112)
+.+...++.+=.++.+.|++++|...|++... +.|+. ..|.-+-.+|.+.|++++|.+.+
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~L 135 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCL 135 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34677899999999999999999999999764 45764 35888999999999999999998
No 131
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.87 E-value=0.15 Score=31.45 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh----ccCCCcCHHHHH
Q 033770 11 RANEVTFVAVLTACARARLVELGLELFHSLLG----EFEVVPIMEHYG 54 (112)
Q Consensus 11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~----~~g~~p~~~~~~ 54 (112)
+-|...|-.+|.++...|+...|.++++++.+ +.|+.|+..+-.
T Consensus 93 P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 93 PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 44788999999999999999999999998863 579999876643
No 132
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.86 E-value=1.4 Score=30.12 Aligned_cols=76 Identities=11% Similarity=-0.038 Sum_probs=62.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH----------------H-HHHH
Q 033770 17 FVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL----------------W-SACK 78 (112)
Q Consensus 17 ~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f----------------~-~~~~ 78 (112)
..-|=-+|.+.|+...|..-+++..+ .-| +.-+|..+-..|-+.|+.+.|.+-| | .=+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~---~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALE---HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 33455578899999999999999875 224 6678889999999999999999999 3 4568
Q ss_pred hhCChhHHHHHHHHHHh
Q 033770 79 IHGAVKLSHEVGKRLLE 95 (112)
Q Consensus 79 ~~g~~~~a~~~~~~m~~ 95 (112)
..|.+++|..-|+....
T Consensus 115 ~qg~~~eA~q~F~~Al~ 131 (250)
T COG3063 115 AQGRPEEAMQQFERALA 131 (250)
T ss_pred hCCChHHHHHHHHHHHh
Confidence 88999999999998875
No 133
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=93.84 E-value=1.5 Score=33.27 Aligned_cols=56 Identities=18% Similarity=0.131 Sum_probs=42.7
Q ss_pred CCcCHHHH--HHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCC
Q 033770 46 VVPIMEHY--GCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHC 101 (112)
Q Consensus 46 ~~p~~~~~--~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~ 101 (112)
-.|+...| .-+-..|-+.|++++|.+++ | +.+...|++..|.+..++.+++++.|-
T Consensus 188 ~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR 262 (517)
T PF12569_consen 188 EPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR 262 (517)
T ss_pred CCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH
Confidence 34666555 44566678889999999988 2 888888999999999888888776553
No 134
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=93.72 E-value=0.99 Score=34.14 Aligned_cols=82 Identities=9% Similarity=0.112 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhc---cCC--Cc-CHHHHHHHHHHHHhcCChhHHHHHH-----H--------
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLGE---FEV--VP-IMEHYGCVVDLLGRAGLLSEANEFL-----W-------- 74 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~---~g~--~p-~~~~~~~li~~~~~~g~~~~A~~~f-----~-------- 74 (112)
..+++.|=..+-+.|++++|..+|+..... .+. .+ .-...|-|=..|.+.++.++|.++| |
T Consensus 367 a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~ 446 (508)
T KOG1840|consen 367 AKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDH 446 (508)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCC
Confidence 367888999999999999999999988742 222 22 2456677888899999999999999 1
Q ss_pred -----------HHHHhhCChhHHHHHHHHHHh
Q 033770 75 -----------SACKIHGAVKLSHEVGKRLLE 95 (112)
Q Consensus 75 -----------~~~~~~g~~~~a~~~~~~m~~ 95 (112)
..|...|+.+.|.++.+...+
T Consensus 447 ~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 447 PDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred CchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 888999999999999998873
No 135
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.71 E-value=0.2 Score=35.70 Aligned_cols=45 Identities=7% Similarity=0.065 Sum_probs=39.0
Q ss_pred CcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 28 RLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 28 ~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
-+.++++.+...=++ +|+.||.++++.+|+.+.+.|++.+|..+.
T Consensus 114 y~pq~~i~~l~npIq-YGiF~dqf~~c~l~D~flk~~n~~~aa~vv 158 (418)
T KOG4570|consen 114 YDPQKAIYTLVNPIQ-YGIFPDQFTFCLLMDSFLKKENYKDAASVV 158 (418)
T ss_pred cChHHHHHHHhCcch-hccccchhhHHHHHHHHHhcccHHHHHHHH
Confidence 345577777777676 999999999999999999999999999987
No 136
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.43 E-value=0.03 Score=34.47 Aligned_cols=74 Identities=18% Similarity=0.159 Sum_probs=53.1
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-----H------HHHHhhCChhHHHH
Q 033770 20 VLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-----W------SACKIHGAVKLSHE 88 (112)
Q Consensus 20 li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-----~------~~~~~~g~~~~a~~ 88 (112)
+|+.+.+.+..+....+++.+.. .+-.-+....+.++..|++.++.++..+++ | +.|.+.|.++.|.-
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~-~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd~~~~~~~c~~~~l~~~a~~ 91 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVK-ENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNNYDLDKALRLCEKHGLYEEAVY 91 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHH-TSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS-CTHHHHHHHTTTSHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHh-cccccCHHHHHHHHHHHHhcCCchHHHHHcccccccCHHHHHHHHHhcchHHHHHH
Confidence 56777777777777788888775 455567788888888888888888888887 1 66666777777776
Q ss_pred HHHHHH
Q 033770 89 VGKRLL 94 (112)
Q Consensus 89 ~~~~m~ 94 (112)
++..+.
T Consensus 92 Ly~~~~ 97 (143)
T PF00637_consen 92 LYSKLG 97 (143)
T ss_dssp HHHCCT
T ss_pred HHHHcc
Confidence 666543
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=93.21 E-value=2.2 Score=31.96 Aligned_cols=60 Identities=15% Similarity=0.077 Sum_probs=36.5
Q ss_pred CCCHHHHH-HHHHHHhccCcHHHHHHHHHHhhhccCCCcC-HHHHHHHHHHHHhcCChhHHHHHH
Q 033770 11 RANEVTFV-AVLTACARARLVELGLELFHSLLGEFEVVPI-MEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 11 ~p~~~t~~-~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
.||...|. ....-+.+.++.++|.+.++++.. ..|+ ...+-.+=.+|.+.|++.+|.+++
T Consensus 336 ~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~~~eai~~L 397 (484)
T COG4783 336 QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGKPQEAIRIL 397 (484)
T ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCChHHHHHHH
Confidence 45444444 344556677777777777777653 2343 444455666677777777777776
No 138
>PRK15331 chaperone protein SicA; Provisional
Probab=93.21 E-value=1.1 Score=28.78 Aligned_cols=69 Identities=6% Similarity=-0.022 Sum_probs=53.8
Q ss_pred hccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH--------------H---HHHHhhCChhHHH
Q 033770 25 ARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL--------------W---SACKIHGAVKLSH 87 (112)
Q Consensus 25 ~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f--------------~---~~~~~~g~~~~a~ 87 (112)
-+.|++++|..+|.-+.. +++. +..=|..|=..|-..|++++|...+ + .++...|+.+.|+
T Consensus 48 y~~Gk~~eA~~~F~~L~~-~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCI-YDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHH-hCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence 367999999999998875 4432 3334566777777789999999998 1 7788889999999
Q ss_pred HHHHHHHh
Q 033770 88 EVGKRLLE 95 (112)
Q Consensus 88 ~~~~~m~~ 95 (112)
..|+...+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 99988775
No 139
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=93.19 E-value=0.68 Score=38.89 Aligned_cols=85 Identities=19% Similarity=0.192 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH--------------H-HHH-
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL--------------W-SAC- 77 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f--------------~-~~~- 77 (112)
...|..|..-|.+.+..++|-++++.|.+.+| -....|......+.+..+-+.|.+++ + +-+
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFA 1607 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHH
Confidence 34577788888888888888888888886433 56778888888888888877777777 0 111
Q ss_pred ---HhhCChhHHHHHHHHHHhcCCCC
Q 033770 78 ---KIHGAVKLSHEVGKRLLELQPEH 100 (112)
Q Consensus 78 ---~~~g~~~~a~~~~~~m~~~~~~~ 100 (112)
-++|+.+++..+|+....-.|.-
T Consensus 1608 qLEFk~GDaeRGRtlfEgll~ayPKR 1633 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSAYPKR 1633 (1710)
T ss_pred HHHhhcCCchhhHHHHHHHHhhCccc
Confidence 14566667666766666545543
No 140
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.18 E-value=1.9 Score=32.44 Aligned_cols=63 Identities=13% Similarity=0.086 Sum_probs=51.3
Q ss_pred CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 9 GLRA-NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 9 g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
-++| |.-.|.+|=..|.+.+++++|...|.+... +-..+...+.-|-+.|-+.++..+|...|
T Consensus 426 ~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~--~~dte~~~l~~LakLye~l~d~~eAa~~y 489 (559)
T KOG1155|consen 426 ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL--LGDTEGSALVRLAKLYEELKDLNEAAQYY 489 (559)
T ss_pred hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh--ccccchHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3455 778889999999999999999999988874 33335678888999999999999998887
No 141
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=93.06 E-value=1.2 Score=34.11 Aligned_cols=57 Identities=7% Similarity=0.017 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
.+|...|+.--+..-+..|..+|.+.++ .+..+ ++..++++|.-|| .++..-|.++|
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~-~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKARE-DKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhh-ccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 4677788888888889999999999997 57777 8999999999887 47778899999
No 142
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=93.00 E-value=0.47 Score=30.13 Aligned_cols=59 Identities=19% Similarity=0.002 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHH----------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770 49 IMEHYGCVVDLLGRAGLLSEANEFL----------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL 107 (112)
Q Consensus 49 ~~~~~~~li~~~~~~g~~~~A~~~f----------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l 107 (112)
....+..+-..|.+.|++++|.+.| | ..+.+.|+.++|...+++..+..|.++..+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 3445667777888999999999988 2 677888999999999999998888776554433
No 143
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=92.80 E-value=0.59 Score=29.50 Aligned_cols=60 Identities=15% Similarity=-0.087 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHH----------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770 49 IMEHYGCVVDLLGRAGLLSEANEFL----------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS 108 (112)
Q Consensus 49 ~~~~~~~li~~~~~~g~~~~A~~~f----------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~ 108 (112)
-...|..+...+...|++++|...| | ..+...|+.++|...++...+..|.....+..+.
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 4566677777888889999999988 2 6677789999999999999988777655544443
No 144
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=92.71 E-value=2.1 Score=34.67 Aligned_cols=88 Identities=9% Similarity=-0.008 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHHH---HHHHhhCChhHHHHHHH
Q 033770 15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFLW---SACKIHGAVKLSHEVGK 91 (112)
Q Consensus 15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~---~~~~~~g~~~~a~~~~~ 91 (112)
..+-++=.+|-+.|+.+++..+++++.+ .. .-|...-|=+--.|+.. ++++|.++.. .-+....+...+.++|.
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~-~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~ 193 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVK-AD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWS 193 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHh-cC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHH
Confidence 4455566677778999999999999996 56 33788888888899999 9999999974 55667779999999999
Q ss_pred HHHhcCCCCCcchh
Q 033770 92 RLLELQPEHCRRYV 105 (112)
Q Consensus 92 ~m~~~~~~~~~~~~ 105 (112)
++....|++...+.
T Consensus 194 k~~~~~~~d~d~f~ 207 (906)
T PRK14720 194 KLVHYNSDDFDFFL 207 (906)
T ss_pred HHHhcCcccchHHH
Confidence 99998888776543
No 145
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=92.66 E-value=1.3 Score=31.71 Aligned_cols=58 Identities=10% Similarity=-0.016 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
+...|..+-.++.+.|++++|...+++... +.| +...|..+-.+|.+.|++++|.+.|
T Consensus 35 ~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~lg~~~eA~~~~ 93 (356)
T PLN03088 35 NAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKLEEYQTAKAAL 93 (356)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 566777788889999999999999999875 234 6778888888999999999999998
No 146
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=92.53 E-value=0.7 Score=31.87 Aligned_cols=55 Identities=11% Similarity=0.095 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHH------------------H--HHHHhhCChhHHHHHHHHHHhcCCCCCcch
Q 033770 50 MEHYGCVVDLLGRAGLLSEANEFL------------------W--SACKIHGAVKLSHEVGKRLLELQPEHCRRY 104 (112)
Q Consensus 50 ~~~~~~li~~~~~~g~~~~A~~~f------------------~--~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 104 (112)
...|...+..+.+.|++++|...| | ..+-..|+.+.|...|+.+.+..|+++...
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~ 217 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAA 217 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence 445677777767789999999998 4 788889999999999999998778765433
No 147
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.49 E-value=0.81 Score=33.40 Aligned_cols=83 Identities=12% Similarity=0.017 Sum_probs=61.2
Q ss_pred HHhccCcHHHHHHHHHHhhhc----cCCC---------cCHHHHHHHHHHHHhcCChhHHHHHH--------------H-
Q 033770 23 ACARARLVELGLELFHSLLGE----FEVV---------PIMEHYGCVVDLLGRAGLLSEANEFL--------------W- 74 (112)
Q Consensus 23 ~~~~~~~~~~a~~~~~~m~~~----~g~~---------p~~~~~~~li~~~~~~g~~~~A~~~f--------------~- 74 (112)
.+.+.|++..|..-+++..+- .++. .-...++=|...|.+.+++.+|++.. |
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyR 296 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYR 296 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHH
Confidence 456888888888777764431 1111 12344555667788999999998876 4
Q ss_pred --HHHHhhCChhHHHHHHHHHHhcCCCCCcchh
Q 033770 75 --SACKIHGAVKLSHEVGKRLLELQPEHCRRYV 105 (112)
Q Consensus 75 --~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 105 (112)
.++...|+++.|...|+++++++|.|.....
T Consensus 297 rG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~ 329 (397)
T KOG0543|consen 297 RGQALLALGEYDLARDDFQKALKLEPSNKAARA 329 (397)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 8999999999999999999999998855433
No 148
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.45 E-value=0.27 Score=22.08 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=21.0
Q ss_pred HHHHhhCChhHHHHHHHHHHhcCCCC
Q 033770 75 SACKIHGAVKLSHEVGKRLLELQPEH 100 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~~~~~~ 100 (112)
..+-..|+.++|.+.|++..++.|++
T Consensus 9 ~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 9 QAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 56778899999999999999888864
No 149
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.39 E-value=0.28 Score=22.94 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=9.5
Q ss_pred HHHHHHHHHhcCChhHHHHH
Q 033770 53 YGCVVDLLGRAGLLSEANEF 72 (112)
Q Consensus 53 ~~~li~~~~~~g~~~~A~~~ 72 (112)
|+.|=+.|.+.|++++|.++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~ 21 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEY 21 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHH
Confidence 34444455555555555544
No 150
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.37 E-value=2 Score=27.79 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc--CHHHHHHHHHHHHhcCChhHHHHHH------------H-----
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVP--IMEHYGCVVDLLGRAGLLSEANEFL------------W----- 74 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~f------------~----- 74 (112)
...+..+-.-|.+.|+.+.|.+.+.++.. +...| -+..+-.+|+...-.|++..+...+ |
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~-~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARD-YCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhh-hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 35677888999999999999999999985 66655 3445568899999999998888887 4
Q ss_pred ------HHHHhhCChhHHHHHHHHHH
Q 033770 75 ------SACKIHGAVKLSHEVGKRLL 94 (112)
Q Consensus 75 ------~~~~~~g~~~~a~~~~~~m~ 94 (112)
-.+...+++..|-+.|-+..
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccC
Confidence 33445678888888877664
No 151
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=92.36 E-value=1.9 Score=32.65 Aligned_cols=74 Identities=14% Similarity=0.170 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH---------H-------HHHHhhCChhHHHHHHHHH
Q 033770 30 VELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL---------W-------SACKIHGAVKLSHEVGKRL 93 (112)
Q Consensus 30 ~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f---------~-------~~~~~~g~~~~a~~~~~~m 93 (112)
++.+.+..++.........+...|.++--.....|++++|...+ | ..+...|+.++|.+.+++.
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44455555443321123335567777755566679999999999 2 6677789999999999999
Q ss_pred HhcCCCCCcc
Q 033770 94 LELQPEHCRR 103 (112)
Q Consensus 94 ~~~~~~~~~~ 103 (112)
..++|..++.
T Consensus 480 ~~L~P~~pt~ 489 (517)
T PRK10153 480 FNLRPGENTL 489 (517)
T ss_pred HhcCCCCchH
Confidence 9999987753
No 152
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.18 E-value=1.1 Score=33.68 Aligned_cols=81 Identities=12% Similarity=0.080 Sum_probs=60.0
Q ss_pred ccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHH---HHhcCChhHHHHHHH-----------------HHHHhhCChhH
Q 033770 26 RARLVELGLELFHSLLGEFEVVPIMEHYGCVVDL---LGRAGLLSEANEFLW-----------------SACKIHGAVKL 85 (112)
Q Consensus 26 ~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~---~~~~g~~~~A~~~f~-----------------~~~~~~g~~~~ 85 (112)
..|++++|...+.+..+ . |...-.+|..- +-..|++++|++.|+ ..|-...+...
T Consensus 502 ~ngd~dka~~~ykeal~-n----dasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aq 576 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALN-N----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQ 576 (840)
T ss_pred ecCcHHHHHHHHHHHHc-C----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHH
Confidence 45889999999888765 2 33332333332 567799999999991 66677788999
Q ss_pred HHHHHHHHHhcCCCCCcchhhhhccc
Q 033770 86 SHEVGKRLLELQPEHCRRYVVLSNVH 111 (112)
Q Consensus 86 a~~~~~~m~~~~~~~~~~~~~l~~~y 111 (112)
|.+++-+...+.|++|....-|..+|
T Consensus 577 aie~~~q~~slip~dp~ilskl~dly 602 (840)
T KOG2003|consen 577 AIELLMQANSLIPNDPAILSKLADLY 602 (840)
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHh
Confidence 99999888888999988777666655
No 153
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.06 E-value=1.3 Score=32.98 Aligned_cols=90 Identities=20% Similarity=0.097 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhc----cCcHHHHHHHHHHhhhccCCCcCHHHHHHHH-HHHHhcCChhHHHHHH----------------
Q 033770 15 VTFVAVLTACAR----ARLVELGLELFHSLLGEFEVVPIMEHYGCVV-DLLGRAGLLSEANEFL---------------- 73 (112)
Q Consensus 15 ~t~~~li~~~~~----~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li-~~~~~~g~~~~A~~~f---------------- 73 (112)
.+|..++..++. ..+++.|.++++.+... -|+...|...- +.+...|++++|.+.|
T Consensus 230 L~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l 306 (468)
T PF10300_consen 230 LWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHL 306 (468)
T ss_pred HHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHH
Confidence 345555555554 45688999999998753 37877775443 3356679999999999
Q ss_pred --H---HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770 74 --W---SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL 107 (112)
Q Consensus 74 --~---~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l 107 (112)
| -.+....++++|.+.|..+.+...-...+|..+
T Consensus 307 ~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~ 345 (468)
T PF10300_consen 307 CYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHH
Confidence 3 456677899999999999987444444555443
No 154
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.02 E-value=0.73 Score=35.06 Aligned_cols=69 Identities=17% Similarity=0.116 Sum_probs=37.8
Q ss_pred HhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH--------------H---HHHHhhCChhH
Q 033770 24 CARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL--------------W---SACKIHGAVKL 85 (112)
Q Consensus 24 ~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f--------------~---~~~~~~g~~~~ 85 (112)
|--.|.+++|...|+...+ +.| |-..||-|=..++...+-.+|..-+ | -+|...|.+++
T Consensus 440 y~ls~efdraiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykE 516 (579)
T KOG1125|consen 440 YNLSGEFDRAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKE 516 (579)
T ss_pred HhcchHHHHHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHH
Confidence 4445556666666655442 344 5555565555566666655655555 1 45555566666
Q ss_pred HHHHHHHHHh
Q 033770 86 SHEVGKRLLE 95 (112)
Q Consensus 86 a~~~~~~m~~ 95 (112)
|.+-|-+...
T Consensus 517 A~~hlL~AL~ 526 (579)
T KOG1125|consen 517 AVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHH
Confidence 6655555443
No 155
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=91.99 E-value=1.9 Score=31.55 Aligned_cols=92 Identities=17% Similarity=0.132 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH--------------------
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------------- 73 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------------- 73 (112)
..+|..++.-....+..+.-...++...+ ..+-++..-.+++.-+.++|+.++|.+++
T Consensus 229 ~~a~~glL~q~~~~~~~~gL~~~W~~~pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~ 306 (400)
T COG3071 229 QQAWEGLLQQARDDNGSEGLKTWWKNQPR--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLR 306 (400)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHhccH--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcC
Confidence 35788888888888888888888888875 45566777788888999999999999998
Q ss_pred -------------H---------------HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770 74 -------------W---------------SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS 108 (112)
Q Consensus 74 -------------~---------------~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~ 108 (112)
| .-|-+++.+.+|.+.|+...+..|+ .+.+..+.
T Consensus 307 ~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la 368 (400)
T COG3071 307 PGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELA 368 (400)
T ss_pred CCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHH
Confidence 2 5566777777777777766655553 33444443
No 156
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.94 E-value=0.56 Score=29.47 Aligned_cols=61 Identities=10% Similarity=-0.031 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
|....|+.-..++ +.|++++|...|+.+...+-..| ..-..--|+.+|-+.|++++|...+
T Consensus 9 ~~~~ly~~a~~~l-~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~ 70 (142)
T PF13512_consen 9 SPQELYQEAQEAL-QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAY 70 (142)
T ss_pred CHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 4445555555544 44888888888888875444443 2222335566666666666665555
No 157
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.89 E-value=3.2 Score=29.07 Aligned_cols=59 Identities=15% Similarity=0.138 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHH----hccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 13 NEVTFVAVLTAC----ARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 13 ~~~t~~~li~~~----~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
+..|.+-|-.++ .-.+.+.+|.-+|++|.. +..|+..+-|-..-.+...|++++|..++
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL 230 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLL 230 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHH
Confidence 445555444443 344557888888888873 57778888887777888888888888887
No 158
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=91.67 E-value=1.3 Score=29.30 Aligned_cols=54 Identities=19% Similarity=0.135 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHH----------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770 49 IMEHYGCVVDLLGRAGLLSEANEFL----------------W----SACKIHGAVKLSHEVGKRLLELQPEHCR 102 (112)
Q Consensus 49 ~~~~~~~li~~~~~~g~~~~A~~~f----------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 102 (112)
....+-.+...+.+.|++++|...| | ..+-..|+++.|...++++.+..|+++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 105 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD 105 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 5566777788899999999999998 1 6777889999999999999998887765
No 159
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=91.62 E-value=0.33 Score=39.00 Aligned_cols=88 Identities=11% Similarity=0.053 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-----------------H-
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-----------------W- 74 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-----------------~- 74 (112)
|.+.=|-+=-.++..|++++|..||.+.+. ... -+..+|-=|-+.|..+|++..|.++| +
T Consensus 645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrE-a~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~L 722 (1018)
T KOG2002|consen 645 NMYAANGIGIVLAEKGRFSEARDIFSQVRE-ATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYL 722 (1018)
T ss_pred hhhhccchhhhhhhccCchHHHHHHHHHHH-HHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 334444444455678889999999999885 232 23455666778889999999999998 1
Q ss_pred -HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770 75 -SACKIHGAVKLSHEVGKRLLELQPEHCR 102 (112)
Q Consensus 75 -~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 102 (112)
+++-+.|.+.+|.+.......+.|.++.
T Consensus 723 ara~y~~~~~~eak~~ll~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 723 ARAWYEAGKLQEAKEALLKARHLAPSNTS 751 (1018)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhCCccch
Confidence 6777778888888888887777787665
No 160
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=91.57 E-value=2 Score=34.84 Aligned_cols=98 Identities=14% Similarity=0.094 Sum_probs=66.6
Q ss_pred CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHH-----H-----H---
Q 033770 9 GLRA-NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEF-----L-----W--- 74 (112)
Q Consensus 9 g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~-----f-----~--- 74 (112)
++.| +...+..||..+-..+++++|.++.+.-.....-.+...-+..+ .|.+.++.+++.-+ | |
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv~~l~~~~~~~~~~~v 102 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLLNLIDSFSQNLKWAIV 102 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhhhhhhhcccccchhHH
Confidence 3444 56678889999999999999999998655322222233333333 55555555554433 2 1
Q ss_pred ---------------------HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770 75 ---------------------SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS 108 (112)
Q Consensus 75 ---------------------~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~ 108 (112)
.+|.+.|+.++|..+++++.+.+|.++...+-++
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~A 157 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLA 157 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 6777889999999999999999998876544433
No 161
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.55 E-value=0.46 Score=22.17 Aligned_cols=26 Identities=12% Similarity=0.098 Sum_probs=21.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhh
Q 033770 16 TFVAVLTACARARLVELGLELFHSLL 41 (112)
Q Consensus 16 t~~~li~~~~~~~~~~~a~~~~~~m~ 41 (112)
+|+.|=..|.+.|++++|..++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47788899999999999999999843
No 162
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=91.50 E-value=2.2 Score=27.98 Aligned_cols=87 Identities=16% Similarity=0.127 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-----------------H--
Q 033770 15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-----------------W-- 74 (112)
Q Consensus 15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-----------------~-- 74 (112)
..|..-... .+.|++++|...|+.+...+...| -....-.+..+|-+.|++++|...| |
T Consensus 7 ~lY~~a~~~-~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 7 ALYQKALEA-LQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYML 85 (203)
T ss_dssp HHHHHHHHH-HHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred HHHHHHHHH-HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence 344444443 456999999999999986433333 2333446788899999999999998 1
Q ss_pred --HH----------HHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770 75 --SA----------CKIHGAVKLSHEVGKRLLELQPEHCR 102 (112)
Q Consensus 75 --~~----------~~~~g~~~~a~~~~~~m~~~~~~~~~ 102 (112)
.. ....+....|...|+.+.+.-|+.+.
T Consensus 86 g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y 125 (203)
T PF13525_consen 86 GLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEY 125 (203)
T ss_dssp HHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTT
T ss_pred HHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchH
Confidence 11 11223345677777777776776543
No 163
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=91.37 E-value=2.3 Score=34.18 Aligned_cols=86 Identities=19% Similarity=0.171 Sum_probs=66.0
Q ss_pred HHHHHHHHHh--ccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH---------------H-HHH
Q 033770 16 TFVAVLTACA--RARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL---------------W-SAC 77 (112)
Q Consensus 16 t~~~li~~~~--~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f---------------~-~~~ 77 (112)
.|.-+++|++ +.|..++|..+++.... .+.. |..|-.++-..|-+.|+.|+|..++ | -+|
T Consensus 43 ~~a~vLkaLsl~r~gk~~ea~~~Le~~~~-~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmay 120 (932)
T KOG2053|consen 43 LYAKVLKALSLFRLGKGDEALKLLEALYG-LKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAY 120 (932)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHhhhcc-CCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHH
Confidence 4555666665 77899999999988765 4554 8899999999999999999999997 3 677
Q ss_pred HhhCChhHHHHHHHHHHhcCCCCCcc
Q 033770 78 KIHGAVKLSHEVGKRLLELQPEHCRR 103 (112)
Q Consensus 78 ~~~g~~~~a~~~~~~m~~~~~~~~~~ 103 (112)
.+.++..+-.++.=++.+..|.++.+
T Consensus 121 vR~~~yk~qQkaa~~LyK~~pk~~yy 146 (932)
T KOG2053|consen 121 VREKSYKKQQKAALQLYKNFPKRAYY 146 (932)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccch
Confidence 77777776666666666677776653
No 164
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.27 E-value=3.7 Score=28.93 Aligned_cols=99 Identities=14% Similarity=0.047 Sum_probs=65.0
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHH-----HHHhcCChhHHHHHH------------
Q 033770 11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVD-----LLGRAGLLSEANEFL------------ 73 (112)
Q Consensus 11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~-----~~~~~g~~~~A~~~f------------ 73 (112)
+.+...-..|.+.-.+.||.+.|...|++..++ .-..|-.+.+.++. .|.-..++-+|.+.|
T Consensus 209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~ 287 (366)
T KOG2796|consen 209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV 287 (366)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh
Confidence 446666667777778999999999999987753 33345555554443 244455566666665
Q ss_pred H---HHHHh--hCChhHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770 74 W---SACKI--HGAVKLSHEVGKRLLELQPEHCRRYVVLSNV 110 (112)
Q Consensus 74 ~---~~~~~--~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~ 110 (112)
+ .+.|. .|+..+|.+..+.|++..|....+-.++.|+
T Consensus 288 a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL 329 (366)
T KOG2796|consen 288 ANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNL 329 (366)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHH
Confidence 1 44333 4889999999999998777654444444443
No 165
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=91.18 E-value=2.4 Score=33.02 Aligned_cols=60 Identities=22% Similarity=0.336 Sum_probs=43.9
Q ss_pred CCCHHHHHH--HHHHHhccCcHHHHHHHHHHhhhccCCCcCH-HHHHHHHHHHHhcCChhHHHHHH
Q 033770 11 RANEVTFVA--VLTACARARLVELGLELFHSLLGEFEVVPIM-EHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 11 ~p~~~t~~~--li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~f 73 (112)
+|.+..|+. +...+=+.|+++.|....+..+ +-.|+. .-|.+=-+.+.+.|++++|..++
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l 428 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWL 428 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 677777764 7777888999999999988866 334543 23334447788899999999888
No 166
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=91.00 E-value=3.4 Score=31.74 Aligned_cols=81 Identities=15% Similarity=0.040 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhhCChhHHHHHHHH
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFLWSACKIHGAVKLSHEVGKR 92 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~g~~~~a~~~~~~ 92 (112)
...+++.|=++|.+.+..++|...+++-.. -.+-|..+|.++=-.|...|+++.|.+.|-.++...-+=..+.++++.
T Consensus 454 w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 454 WEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred hhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 556788999999999999999999999874 455588999999888999999999999973444444444445555555
Q ss_pred HHh
Q 033770 93 LLE 95 (112)
Q Consensus 93 m~~ 95 (112)
+.+
T Consensus 532 aie 534 (611)
T KOG1173|consen 532 AIE 534 (611)
T ss_pred HHH
Confidence 543
No 167
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=90.88 E-value=2.8 Score=33.05 Aligned_cols=59 Identities=15% Similarity=0.062 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
....|--..+-+-.+|++..|..++...-. ..-. +..+|=+-++.-.+..+++.|.++|
T Consensus 583 ae~lwlM~ake~w~agdv~~ar~il~~af~-~~pn-seeiwlaavKle~en~e~eraR~ll 641 (913)
T KOG0495|consen 583 AEILWLMYAKEKWKAGDVPAARVILDQAFE-ANPN-SEEIWLAAVKLEFENDELERARDLL 641 (913)
T ss_pred chhHHHHHHHHHHhcCCcHHHHHHHHHHHH-hCCC-cHHHHHHHHHHhhccccHHHHHHHH
Confidence 333444444444455555555555555442 1111 4445555555555555555555555
No 168
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=90.60 E-value=2.6 Score=25.66 Aligned_cols=54 Identities=15% Similarity=0.110 Sum_probs=37.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 17 FVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 17 ~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
...+|..+.+.+.......+++.+.. .+ ..+...+|.+|..|++..+ .+..+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~-~~-~~~~~~~~~li~ly~~~~~-~~ll~~l 63 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALK-LN-SENPALQTKLIELYAKYDP-QKEIERL 63 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHc-cC-ccchhHHHHHHHHHHHHCH-HHHHHHH
Confidence 34667777777888888888888875 45 3577788888888887643 3334444
No 169
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=90.45 E-value=3.1 Score=29.60 Aligned_cols=75 Identities=16% Similarity=0.188 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH--------H----HHHHhhC
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL--------W----SACKIHG 81 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f--------~----~~~~~~g 81 (112)
..+.+.-|.-+...|....|.++-. ++++ ||---|-.-|++|++.|+|++-.++. | ..|.+.|
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k----~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~skKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKK----EFKV-PDKRFWWLKIKALAENKDWDELEKFAKSKKSPIGYEPFVEACLKYG 251 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHH----HcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhCCCCCCChHHHHHHHHHCC
Confidence 3455666777778888877766643 3555 89999999999999999999988766 3 8999999
Q ss_pred ChhHHHHHHHHH
Q 033770 82 AVKLSHEVGKRL 93 (112)
Q Consensus 82 ~~~~a~~~~~~m 93 (112)
+..+|......+
T Consensus 252 ~~~eA~~yI~k~ 263 (319)
T PF04840_consen 252 NKKEASKYIPKI 263 (319)
T ss_pred CHHHHHHHHHhC
Confidence 999988777663
No 170
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=90.20 E-value=1.7 Score=34.76 Aligned_cols=51 Identities=16% Similarity=0.160 Sum_probs=20.7
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHH
Q 033770 19 AVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEF 72 (112)
Q Consensus 19 ~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 72 (112)
-.|..|.+.|.+++|.++-++. .|-...+..|-+=-.-.-+.|++.+|+++
T Consensus 796 dai~my~k~~kw~da~kla~e~---~~~e~t~~~yiakaedldehgkf~eaeql 846 (1636)
T KOG3616|consen 796 DAIDMYGKAGKWEDAFKLAEEC---HGPEATISLYIAKAEDLDEHGKFAEAEQL 846 (1636)
T ss_pred HHHHHHhccccHHHHHHHHHHh---cCchhHHHHHHHhHHhHHhhcchhhhhhe
Confidence 3444444444444444443332 12223333333333333444444444444
No 171
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.00 E-value=2.8 Score=26.47 Aligned_cols=73 Identities=22% Similarity=0.105 Sum_probs=55.7
Q ss_pred HHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-----------------H----HHHHhhC
Q 033770 23 ACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-----------------W----SACKIHG 81 (112)
Q Consensus 23 ~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-----------------~----~~~~~~g 81 (112)
+.+..|++++|++.|.+-.. -.+-....||-=-.++--.|+.++|.+=+ | .-|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 45788999999999999764 23347888999999999999999988777 1 3445567
Q ss_pred ChhHHHHHHHHHHhcC
Q 033770 82 AVKLSHEVGKRLLELQ 97 (112)
Q Consensus 82 ~~~~a~~~~~~m~~~~ 97 (112)
+.+.|..=|...-+++
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 8888887777665544
No 172
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=89.91 E-value=5 Score=31.72 Aligned_cols=96 Identities=13% Similarity=0.125 Sum_probs=69.3
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----
Q 033770 12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W---- 74 (112)
Q Consensus 12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~---- 74 (112)
-+...|-.-++--+....+|.|..+|.+... ..|+.-.|.-=++.---.++.++|.+++ |
T Consensus 616 nseeiwlaavKle~en~e~eraR~llakar~---~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlG 692 (913)
T KOG0495|consen 616 NSEEIWLAAVKLEFENDELERARDLLAKARS---ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLG 692 (913)
T ss_pred CcHHHHHHHHHHhhccccHHHHHHHHHHHhc---cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHh
Confidence 3566777888888888999999999998764 4455555554444444467888888887 4
Q ss_pred HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770 75 SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNV 110 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~ 110 (112)
..+-+.++.+.|.+.+..=.+..|..+-.+.+|+.+
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl 728 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL 728 (913)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH
Confidence 666777788888887776666777777777777653
No 173
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=89.80 E-value=2.5 Score=34.70 Aligned_cols=82 Identities=17% Similarity=0.139 Sum_probs=58.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH---------------------
Q 033770 16 TFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL--------------------- 73 (112)
Q Consensus 16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f--------------------- 73 (112)
.|+.|=.-|+..-+...|.+.|+... .+-| |...+-++.+-|++..+++.|..+.
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAF---eLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAF---ELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---cCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 34444444555556666777776654 2333 6777788888899999998888887
Q ss_pred ----------------------------H----HHHHhhCChhHHHHHHHHHHhcCCCC
Q 033770 74 ----------------------------W----SACKIHGAVKLSHEVGKRLLELQPEH 100 (112)
Q Consensus 74 ----------------------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~ 100 (112)
| .+|.+.|+...|.++|.+...+.|.+
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 4 78888888888888888887777754
No 174
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=89.78 E-value=3.9 Score=28.21 Aligned_cols=21 Identities=10% Similarity=0.041 Sum_probs=17.3
Q ss_pred HHHHhhCChhHHHHHHHHHHh
Q 033770 75 SACKIHGAVKLSHEVGKRLLE 95 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~ 95 (112)
..+.+.|+.++|.++|+++..
T Consensus 163 ~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 163 DLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 677888999999999998875
No 175
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=89.72 E-value=3.2 Score=30.40 Aligned_cols=69 Identities=19% Similarity=0.070 Sum_probs=38.4
Q ss_pred HhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH--------------H--HHHHhhCChhHHH
Q 033770 24 CARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL--------------W--SACKIHGAVKLSH 87 (112)
Q Consensus 24 ~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f--------------~--~~~~~~g~~~~a~ 87 (112)
+.+.++.+.=.+..+.-....+-.| ..+.+|=..|.+.+.+.+|.+.| | +++.+.|+..+|.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 3444444444444443332233333 44555666666666666666666 2 6666667777777
Q ss_pred HHHHHHH
Q 033770 88 EVGKRLL 94 (112)
Q Consensus 88 ~~~~~m~ 94 (112)
.+.++-.
T Consensus 382 ~~r~e~L 388 (400)
T COG3071 382 QVRREAL 388 (400)
T ss_pred HHHHHHH
Confidence 6666655
No 176
>PRK15331 chaperone protein SicA; Provisional
Probab=89.68 E-value=1.1 Score=28.86 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=37.3
Q ss_pred HHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcch
Q 033770 58 DLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRY 104 (112)
Q Consensus 58 ~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 104 (112)
--+-..|++++|..+| | .+|-..++.+.|...+...-.+++++|.++
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~ 108 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV 108 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence 3456789999999999 3 556667899999999998887777776643
No 177
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.58 E-value=0.49 Score=21.37 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=19.3
Q ss_pred HHHHhhCChhHHHHHHHHHHhcCCC
Q 033770 75 SACKIHGAVKLSHEVGKRLLELQPE 99 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~~~~~ 99 (112)
..+...|+.++|...|++..+++|+
T Consensus 9 ~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 9 NAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4667788888888888888888775
No 178
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=89.44 E-value=3.3 Score=31.43 Aligned_cols=58 Identities=5% Similarity=-0.065 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
+...|.++=-.....|++++|...+++... . .|+...|..+-+.+...|+.++|.+.+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~-L--~ps~~a~~~lG~~~~~~G~~~eA~~~~ 476 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAID-L--EMSWLNYVLLGKVYELKGDNRLAADAY 476 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-c--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 445566554444457999999999999875 3 478999999999999999999999998
No 179
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=89.17 E-value=1.2 Score=35.62 Aligned_cols=68 Identities=13% Similarity=0.201 Sum_probs=33.7
Q ss_pred HHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-----H----HHHHhhCChhHHHHHHHH
Q 033770 22 TACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-----W----SACKIHGAVKLSHEVGKR 92 (112)
Q Consensus 22 ~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-----~----~~~~~~g~~~~a~~~~~~ 92 (112)
.+-..+..+.+|..+.+.+.. ... -..-|..+-+-|+..|+++.|+++| + ..|.+.|++++|.++..+
T Consensus 740 eaai~akew~kai~ildniqd-qk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e 816 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQD-QKT--ASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEE 816 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhh-hcc--ccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHH
Confidence 334445555666666555442 222 1222445555556666666666655 1 445555555555554443
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=89.14 E-value=3.5 Score=25.02 Aligned_cols=69 Identities=19% Similarity=0.157 Sum_probs=46.6
Q ss_pred hHHHhhcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC----HHHHHHHHHHHHhcCChhHHHHHH
Q 033770 2 VDEMYEKGLRAN--EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPI----MEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 2 ~~~M~~~g~~p~--~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
|++-.+.|+..+ .-.+-.+=+.+...|++++|..+++....+ + |+ ......+-.++...|+.++|.+.+
T Consensus 24 Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~-p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~ 98 (120)
T PF12688_consen 24 YRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--F-PDDELNAALRVFLALALYNLGRPKEALEWL 98 (120)
T ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--C-CCccccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 344445565544 334556777888999999999999998753 2 43 122222334678889999999987
No 181
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.89 E-value=0.69 Score=20.47 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=20.8
Q ss_pred HHHHhhCChhHHHHHHHHHHhcCCC
Q 033770 75 SACKIHGAVKLSHEVGKRLLELQPE 99 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~~~~~ 99 (112)
.++.+.|+.++|.+.|+++.+.-|+
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4667789999999999999887775
No 182
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.70 E-value=5.5 Score=30.84 Aligned_cols=89 Identities=20% Similarity=0.247 Sum_probs=65.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHH--------HhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-----H--------
Q 033770 16 TFVAVLTACARARLVELGLELFH--------SLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-----W-------- 74 (112)
Q Consensus 16 t~~~li~~~~~~~~~~~a~~~~~--------~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-----~-------- 74 (112)
.--..+.-....|+++.|.++.. .... .+-.|- +-.+++..|.+.++-+.|..++ |
T Consensus 378 v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~-~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s 454 (652)
T KOG2376|consen 378 VLLLRAQLKISQGNPEVALEILSLFLESWKSSILE-AKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS 454 (652)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh-hccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc
Confidence 34455666678899999999999 6654 555554 4567888899999988888888 2
Q ss_pred -----------HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770 75 -----------SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL 107 (112)
Q Consensus 75 -----------~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l 107 (112)
.-=-++|+-++|..+++++.+..|++....+-+
T Consensus 455 ~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~l 498 (652)
T KOG2376|consen 455 IALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQL 498 (652)
T ss_pred hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHH
Confidence 222456999999999999999888765544433
No 183
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.67 E-value=6.4 Score=29.91 Aligned_cols=49 Identities=14% Similarity=0.249 Sum_probs=40.0
Q ss_pred hccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 25 ARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 25 ~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
-+.|+.++|.+.|.+|.++....-......-||.++...+++.++..++
T Consensus 270 rklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 270 RKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred HHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 4779999999999999864332224456678999999999999999999
No 184
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.57 E-value=0.54 Score=21.79 Aligned_cols=22 Identities=27% Similarity=0.237 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHH
Q 033770 49 IMEHYGCVVDLLGRAGLLSEAN 70 (112)
Q Consensus 49 ~~~~~~~li~~~~~~g~~~~A~ 70 (112)
|...|+-+=..|.+.|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 7788888888888888888886
No 185
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.49 E-value=5.1 Score=29.13 Aligned_cols=91 Identities=12% Similarity=0.095 Sum_probs=68.7
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHH-HHHHHHHHhcCChhHHHHHH---------------H
Q 033770 11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHY-GCVVDLLGRAGLLSEANEFL---------------W 74 (112)
Q Consensus 11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~f---------------~ 74 (112)
.|-.-||.-|-++|.+....+.|+.++.+-. ...|-.+|| .-+-+.+-..++.++|.+++ .
T Consensus 253 ~~~~dTfllLskvY~ridQP~~AL~~~~~gl---d~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAc 329 (478)
T KOG1129|consen 253 FPHPDTFLLLSKVYQRIDQPERALLVIGEGL---DSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIAC 329 (478)
T ss_pred CCchhHHHHHHHHHHHhccHHHHHHHHhhhh---hcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeee
Confidence 5667788889999999999999999998765 234544555 56778888899999999998 0
Q ss_pred --HHHHhhCChhHHHHHHHHHHhcCCCCCcch
Q 033770 75 --SACKIHGAVKLSHEVGKRLLELQPEHCRRY 104 (112)
Q Consensus 75 --~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 104 (112)
.+|--.++++.|.+.++.+.+++..+|..|
T Consensus 330 ia~~yfY~~~PE~AlryYRRiLqmG~~speLf 361 (478)
T KOG1129|consen 330 IAVGYFYDNNPEMALRYYRRILQMGAQSPELF 361 (478)
T ss_pred eeeccccCCChHHHHHHHHHHHHhcCCChHHH
Confidence 344445788888888888887665555443
No 186
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=88.28 E-value=6.5 Score=27.11 Aligned_cols=83 Identities=16% Similarity=0.110 Sum_probs=47.0
Q ss_pred HHHHHHHHhcc-CcHHHHHHHHHHhhh---ccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH--------------H---
Q 033770 17 FVAVLTACARA-RLVELGLELFHSLLG---EFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL--------------W--- 74 (112)
Q Consensus 17 ~~~li~~~~~~-~~~~~a~~~~~~m~~---~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f--------------~--- 74 (112)
+..+=..|-+. |++++|...+++... ..|-.- -...+.-+...+.+.|++++|.++| |
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 33344445555 677777777666553 112111 1334456667788888888888888 1
Q ss_pred -------HHHHhhCChhHHHHHHHHHHhcCCC
Q 033770 75 -------SACKIHGAVKLSHEVGKRLLELQPE 99 (112)
Q Consensus 75 -------~~~~~~g~~~~a~~~~~~m~~~~~~ 99 (112)
-.+...||...|.+.+++.....|.
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 2334457888888888887766653
No 187
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.05 E-value=1.6 Score=20.29 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhh
Q 033770 15 VTFVAVLTACARARLVELGLELFHSLL 41 (112)
Q Consensus 15 ~t~~~li~~~~~~~~~~~a~~~~~~m~ 41 (112)
.+++.|=..|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 456667777777777777777776655
No 188
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.85 E-value=5 Score=28.11 Aligned_cols=55 Identities=15% Similarity=0.075 Sum_probs=44.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 16 TFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
++..++.++...|+.+.+...+++... ..| |-..|..+|.+|.+.|+..+|.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~---~dp~~E~~~~~lm~~y~~~g~~~~ai~~y 210 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIE---LDPYDEPAYLRLMEAYLVNGRQSAAIRAY 210 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHh---cCccchHHHHHHHHHHHHcCCchHHHHHH
Confidence 455677777788888888888888875 234 8888999999999999999999887
No 189
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=87.70 E-value=4.6 Score=28.43 Aligned_cols=66 Identities=8% Similarity=0.031 Sum_probs=55.1
Q ss_pred cCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 8 KGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 8 ~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
.|-.|+..+..++|...+..+++++-.++++......+..-|.-.|...|+.-.+.|+..-..+++
T Consensus 196 ~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 196 FSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred cccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 356778888888999999999999999999888752356668889999999999999988888887
No 190
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=87.65 E-value=2 Score=29.22 Aligned_cols=44 Identities=20% Similarity=0.151 Sum_probs=31.5
Q ss_pred HHHhcCChhHHHHHH------------------H--HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770 59 LLGRAGLLSEANEFL------------------W--SACKIHGAVKLSHEVGKRLLELQPEHCR 102 (112)
Q Consensus 59 ~~~~~g~~~~A~~~f------------------~--~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 102 (112)
.+.+.|++++|.+.| | .++-+.++.+.|...+++..+..|+++.
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~ 104 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 104 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence 345567777777777 2 5556778888888888888887777654
No 191
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.57 E-value=4.9 Score=28.00 Aligned_cols=34 Identities=18% Similarity=0.097 Sum_probs=28.0
Q ss_pred HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770 75 SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS 108 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~ 108 (112)
.-|...|++++|--.++++.-.+|.++-.+--++
T Consensus 162 eiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rla 195 (289)
T KOG3060|consen 162 EIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLA 195 (289)
T ss_pred HHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 8888899999999999999988898876655443
No 192
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.41 E-value=0.86 Score=20.44 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=17.9
Q ss_pred HHHHhhCChhHHHHHHHHHHhcCCC
Q 033770 75 SACKIHGAVKLSHEVGKRLLELQPE 99 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~~~~~ 99 (112)
..+...|+.+.|.+.|++..++.|+
T Consensus 9 ~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 9 KIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566777888888888877776663
No 193
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=87.05 E-value=8.5 Score=30.16 Aligned_cols=97 Identities=23% Similarity=0.283 Sum_probs=74.6
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHH------HHHHhcCChhHHHHHH------------H
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVV------DLLGRAGLLSEANEFL------------W 74 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li------~~~~~~g~~~~A~~~f------------~ 74 (112)
....|....-+.--.|+...|..+.+..++...-.|+...|.-.. .-..+.|.+++|.+-+ +
T Consensus 142 ~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~ 221 (700)
T KOG1156|consen 142 QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAF 221 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHH
Confidence 456777788888888999999999999986322246666664222 2347889999999988 2
Q ss_pred -----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhc
Q 033770 75 -----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSN 109 (112)
Q Consensus 75 -----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~ 109 (112)
.-+.+.+++++|..++.......|++..+|..+..
T Consensus 222 ~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~ 261 (700)
T KOG1156|consen 222 EETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEK 261 (700)
T ss_pred hhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHH
Confidence 66678899999999999999999999887766543
No 194
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=86.99 E-value=2.8 Score=31.59 Aligned_cols=82 Identities=20% Similarity=0.170 Sum_probs=47.0
Q ss_pred HHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChh
Q 033770 23 ACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVK 84 (112)
Q Consensus 23 ~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~ 84 (112)
-|+-.++.++|...|++..+ +.| ....|+.|=+=|.+..+-..|.+-+ | .+|...+...
T Consensus 339 YYSlr~eHEKAv~YFkRALk---LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~ 415 (559)
T KOG1155|consen 339 YYSLRSEHEKAVMYFKRALK---LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHF 415 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHh---cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchH
Confidence 34455667788888877553 444 4556666666777777777777766 3 4444444444
Q ss_pred HHHHHHHHHHhcCCCCCcchhhh
Q 033770 85 LSHEVGKRLLELQPEHCRRYVVL 107 (112)
Q Consensus 85 ~a~~~~~~m~~~~~~~~~~~~~l 107 (112)
-|+-.|++..++.|.|+..++.|
T Consensus 416 YaLyYfqkA~~~kPnDsRlw~aL 438 (559)
T KOG1155|consen 416 YALYYFQKALELKPNDSRLWVAL 438 (559)
T ss_pred HHHHHHHHHHhcCCCchHHHHHH
Confidence 44444444444444444444433
No 195
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.82 E-value=3.7 Score=31.20 Aligned_cols=50 Identities=14% Similarity=0.110 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCC
Q 033770 50 MEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPE 99 (112)
Q Consensus 50 ~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~ 99 (112)
+..|--+--+.-|.+++++++..| | ..+...+++++|.+-++...++.|.
T Consensus 428 ~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 428 AYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 333333333344555666666666 1 6666667777777777777776665
No 196
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=86.80 E-value=6.4 Score=31.33 Aligned_cols=74 Identities=22% Similarity=0.228 Sum_probs=54.5
Q ss_pred ccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHH--HH-------------H----HHHHhhCChhH
Q 033770 26 RARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANE--FL-------------W----SACKIHGAVKL 85 (112)
Q Consensus 26 ~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~--~f-------------~----~~~~~~g~~~~ 85 (112)
..|..++|.+.|..- .-+.| ++.+-.++-..+.+.|+..-|.+ ++ | ..+.+.|+.+.
T Consensus 696 ~~~~~~EA~~af~~A---l~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 696 VKGQLEEAKEAFLVA---LALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred HHHhhHHHHHHHHHH---HhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHH
Confidence 345566666666553 34566 45566788888888888877777 55 5 88889999999
Q ss_pred HHHHHHHHHhcCCCCCc
Q 033770 86 SHEVGKRLLELQPEHCR 102 (112)
Q Consensus 86 a~~~~~~m~~~~~~~~~ 102 (112)
|-+.|+...++.+.+|.
T Consensus 773 Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 773 AAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHhhccCCCc
Confidence 99999999887776654
No 197
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=86.49 E-value=5 Score=26.00 Aligned_cols=51 Identities=16% Similarity=-0.037 Sum_probs=38.4
Q ss_pred HHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 23 ACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 23 ~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
......+.+......+...+.....|+...|..++.++...|+.++|.++.
T Consensus 117 ~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~ 167 (193)
T PF11846_consen 117 LARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWL 167 (193)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 333556655555555555544567799999999999999999999999887
No 198
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.03 E-value=1.3 Score=31.77 Aligned_cols=37 Identities=8% Similarity=0.178 Sum_probs=32.7
Q ss_pred hhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 033770 6 YEKGLRANEVTFVAVLTACARARLVELGLELFHSLLG 42 (112)
Q Consensus 6 ~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 42 (112)
.+.|+-||.+|++.+|+.+.+.+++.+|.++.-.|..
T Consensus 127 IqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 127 IQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred chhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3579999999999999999999999988888777664
No 199
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=85.94 E-value=6 Score=30.15 Aligned_cols=60 Identities=12% Similarity=0.199 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
.||.-.|++.|+--.+-..++.|..++++.. -+.|++.+|---.+-=-++|++.-|..++
T Consensus 171 ~P~eqaW~sfI~fElRykeieraR~IYerfV---~~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 171 EPDEQAWLSFIKFELRYKEIERARSIYERFV---LVHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh---eecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 4455555555554444444555555554443 13344444444444444444444444444
No 200
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=85.75 E-value=2.8 Score=33.21 Aligned_cols=74 Identities=14% Similarity=0.145 Sum_probs=55.9
Q ss_pred HHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcC--
Q 033770 37 FHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQ-- 97 (112)
Q Consensus 37 ~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~-- 97 (112)
+.++.. ..+.=|...|..|.-+..++|+++.+.+.| | ..+...|.-..|..+.++-....
T Consensus 311 ~~k~r~-~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 311 LRKLRL-KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHHHHH-hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 334443 345568889999999999999999999999 5 66677788888999988877655
Q ss_pred CCCCcchhhhhccc
Q 033770 98 PEHCRRYVVLSNVH 111 (112)
Q Consensus 98 ~~~~~~~~~l~~~y 111 (112)
|++++.+.+.+.+|
T Consensus 390 ps~~s~~Lmasklc 403 (799)
T KOG4162|consen 390 PSDISVLLMASKLC 403 (799)
T ss_pred CCcchHHHHHHHHH
Confidence 77777766666554
No 201
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.47 E-value=4.4 Score=23.94 Aligned_cols=53 Identities=17% Similarity=0.281 Sum_probs=41.7
Q ss_pred HhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHH
Q 033770 5 MYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDL 59 (112)
Q Consensus 5 M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~ 59 (112)
+-...+.|+.....+.|+||-+.+|+..|.++|+..+- ++..+..+|..++.-
T Consensus 33 l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~--K~~~~~~~y~~~lqe 85 (103)
T cd00923 33 LFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD--KCGAHKEIYPYILQE 85 (103)
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HccCchhhHHHHHHH
Confidence 33456889999999999999999999999999999874 333355577766653
No 202
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=85.47 E-value=2.1 Score=30.22 Aligned_cols=44 Identities=9% Similarity=0.132 Sum_probs=34.0
Q ss_pred CCCCHHH-HHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHH
Q 033770 10 LRANEVT-FVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYG 54 (112)
Q Consensus 10 ~~p~~~t-~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~ 54 (112)
+.||+.+ |+.-|..-.+.||+++|+++.++.++ .|+.--..++-
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~-LG~~~Ar~tFi 296 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAER-LGSTSARSTFI 296 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCchHHHHHH
Confidence 4455554 57899999999999999999999997 88875544443
No 203
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.77 E-value=3.4 Score=28.68 Aligned_cols=86 Identities=9% Similarity=0.045 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHH---HHHHHHhcCChhHHHHHH------H----------
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGC---VVDLLGRAGLLSEANEFL------W---------- 74 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~---li~~~~~~g~~~~A~~~f------~---------- 74 (112)
...|+.-++.+ ++|++.+|..-|..-++ +.+-+..+=|+ |-..+...|++++|..+| |
T Consensus 142 ~~~Y~~A~~~~-ksgdy~~A~~~F~~fi~--~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 142 TKLYNAALDLY-KSGDYAEAEQAFQAFIK--KYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred hHHHHHHHHHH-HcCCHHHHHHHHHHHHH--cCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence 34688888765 56779999999999885 33323333332 667788999999999999 1
Q ss_pred ----HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770 75 ----SACKIHGAVKLSHEVGKRLLELQPEHCR 102 (112)
Q Consensus 75 ----~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 102 (112)
.+..+.|+.++|...++++.+.=|..+.
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 6667788999999999998876675543
No 204
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=84.75 E-value=4.7 Score=25.42 Aligned_cols=58 Identities=14% Similarity=0.222 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHhccCc-HHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHH
Q 033770 12 ANEVTFVAVLTACARARL-VELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANE 71 (112)
Q Consensus 12 p~~~t~~~li~~~~~~~~-~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 71 (112)
.|.-+|.+++++.+++.. --.+..+|..|++ .+.+++..-|-.||++..+. ...+...
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~-~~~~~t~~dy~~li~~~l~g-~~~~~~~ 135 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK-NDIEFTPSDYSCLIKAALRG-YFHDSLY 135 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHcC-CCCcchH
Confidence 356679999999998888 5678899999997 78999999999999997765 4444333
No 205
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.33 E-value=17 Score=28.07 Aligned_cols=78 Identities=15% Similarity=0.106 Sum_probs=63.4
Q ss_pred HHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhH
Q 033770 23 ACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKL 85 (112)
Q Consensus 23 ~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~ 85 (112)
.......+.+..++|-.+.+..+-.+|...++.|=-.|--.|++++|.+-| | ...+...+..+
T Consensus 403 s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~E 482 (579)
T KOG1125|consen 403 SFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEE 482 (579)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHH
Confidence 334455566777778777765676688888888888899999999999999 7 67777778999
Q ss_pred HHHHHHHHHhcCCCC
Q 033770 86 SHEVGKRLLELQPEH 100 (112)
Q Consensus 86 a~~~~~~m~~~~~~~ 100 (112)
|...+++..+++|.=
T Consensus 483 AIsAY~rALqLqP~y 497 (579)
T KOG1125|consen 483 AISAYNRALQLQPGY 497 (579)
T ss_pred HHHHHHHHHhcCCCe
Confidence 999999999999963
No 206
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=84.31 E-value=16 Score=28.04 Aligned_cols=72 Identities=18% Similarity=0.218 Sum_probs=59.5
Q ss_pred HHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH------------H----HHHHhhCChh
Q 033770 21 LTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL------------W----SACKIHGAVK 84 (112)
Q Consensus 21 i~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f------------~----~~~~~~g~~~ 84 (112)
+..--..|++..|.++|++-. ...||...|++.|+.=.|-.+++.|..++ | +-=-++|++.
T Consensus 148 ~ymEE~LgNi~gaRqiferW~---~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWM---EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHH
Confidence 444456799999999999864 57899999999999999999999999998 4 2224678888
Q ss_pred HHHHHHHHHHh
Q 033770 85 LSHEVGKRLLE 95 (112)
Q Consensus 85 ~a~~~~~~m~~ 95 (112)
.+.+++....+
T Consensus 225 ~aR~VyerAie 235 (677)
T KOG1915|consen 225 LARSVYERAIE 235 (677)
T ss_pred HHHHHHHHHHH
Confidence 88888887765
No 207
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.28 E-value=12 Score=26.10 Aligned_cols=52 Identities=19% Similarity=0.358 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHH------------------H--HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770 50 MEHYGCVVDLLGRAGLLSEANEFL------------------W--SACKIHGAVKLSHEVGKRLLELQPEHCR 102 (112)
Q Consensus 50 ~~~~~~li~~~~~~g~~~~A~~~f------------------~--~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 102 (112)
..-|+.-++.| +.|++.+|..-| | .++-..|+.++|..+|..+.+.-|..+.
T Consensus 142 ~~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~K 213 (262)
T COG1729 142 TKLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPK 213 (262)
T ss_pred hHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCC
Confidence 44777777655 677899999998 6 7888889999999999999876666544
No 208
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=84.09 E-value=13 Score=26.90 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=30.4
Q ss_pred HHHHhhCChhHHHHHHHHHHhcCCC-CCcchhhhhccc
Q 033770 75 SACKIHGAVKLSHEVGKRLLELQPE-HCRRYVVLSNVH 111 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~l~~~y 111 (112)
....+.|-+..|.++.+-+..++|. ||...-+.+..|
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ 148 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYY 148 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHH
Confidence 8889999999999999999999998 776555555444
No 209
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=84.04 E-value=6.5 Score=29.44 Aligned_cols=48 Identities=13% Similarity=-0.039 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHH----------------H----HHHHhhCChhHHHHHHHHHHhc
Q 033770 49 IMEHYGCVVDLLGRAGLLSEANEFL----------------W----SACKIHGAVKLSHEVGKRLLEL 96 (112)
Q Consensus 49 ~~~~~~~li~~~~~~g~~~~A~~~f----------------~----~~~~~~g~~~~a~~~~~~m~~~ 96 (112)
+...|+-+-.+|.+.|++++|...| | .+|...|+.++|...+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6778888999999999999999999 3 6788899999999999998875
No 210
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.79 E-value=7.1 Score=31.08 Aligned_cols=73 Identities=21% Similarity=0.093 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-----H----HHHHhhC
Q 033770 11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-----W----SACKIHG 81 (112)
Q Consensus 11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-----~----~~~~~~g 81 (112)
-||.--|=-=+.+.+..+++++-+++-..+++ ++.|-=.+.+|.+.|+.+||.+++ + .+|.+.|
T Consensus 712 ipdKr~~wLk~~aLa~~~kweeLekfAkskks-------PIGy~PFVe~c~~~~n~~EA~KYiprv~~l~ekv~ay~~~~ 784 (829)
T KOG2280|consen 712 IPDKRLWWLKLTALADIKKWEELEKFAKSKKS-------PIGYLPFVEACLKQGNKDEAKKYIPRVGGLQEKVKAYLRVG 784 (829)
T ss_pred CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-------CCCchhHHHHHHhcccHHHHhhhhhccCChHHHHHHHHHhc
Confidence 46666666667777777888776666555442 445555777888888888888888 2 6667777
Q ss_pred ChhHHHHHH
Q 033770 82 AVKLSHEVG 90 (112)
Q Consensus 82 ~~~~a~~~~ 90 (112)
++.+|.++.
T Consensus 785 ~~~eAad~A 793 (829)
T KOG2280|consen 785 DVKEAADLA 793 (829)
T ss_pred cHHHHHHHH
Confidence 777666544
No 211
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=83.57 E-value=3.7 Score=19.80 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=21.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhh
Q 033770 16 TFVAVLTACARARLVELGLELFHSLLG 42 (112)
Q Consensus 16 t~~~li~~~~~~~~~~~a~~~~~~m~~ 42 (112)
++..+=.++...|++++|.+++++..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455667788888888888888888875
No 212
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=83.09 E-value=15 Score=29.12 Aligned_cols=21 Identities=10% Similarity=0.104 Sum_probs=17.4
Q ss_pred HHHHhhCChhHHHHHHHHHHh
Q 033770 75 SACKIHGAVKLSHEVGKRLLE 95 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~ 95 (112)
..|.+.|++++|..++++-.+
T Consensus 256 dYYIr~g~~ekarDvyeeai~ 276 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQ 276 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHH
Confidence 778888899999888887764
No 213
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=83.03 E-value=4.7 Score=26.40 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=33.7
Q ss_pred HHHhcCChhHHHHHH------------------H--HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770 59 LLGRAGLLSEANEFL------------------W--SACKIHGAVKLSHEVGKRLLELQPEHCR 102 (112)
Q Consensus 59 ~~~~~g~~~~A~~~f------------------~--~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 102 (112)
.+.+.|++++|.+.| | .++-+.|+.+.|...++...+.-|.++.
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~ 77 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK 77 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 456788899999988 2 7778899999999999999998888764
No 214
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=82.88 E-value=3.8 Score=29.21 Aligned_cols=42 Identities=10% Similarity=0.069 Sum_probs=35.1
Q ss_pred ChHHHhhcCCCCCHHHHHHHHHHHhccCc-HHHHHHHHHHhhh
Q 033770 1 MVDEMYEKGLRANEVTFVAVLTACARARL-VELGLELFHSLLG 42 (112)
Q Consensus 1 l~~~M~~~g~~p~~~t~~~li~~~~~~~~-~~~a~~~~~~m~~ 42 (112)
|+++|...|+.||..+=..||.++++-+- ..+-.++.-.|.+
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 47899999999999999999999998876 4566666666664
No 215
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=82.59 E-value=15 Score=31.62 Aligned_cols=83 Identities=7% Similarity=0.095 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc---CHHHHHHHHHHHHhcCChhHHHHHH-----H----------
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP---IMEHYGCVVDLLGRAGLLSEANEFL-----W---------- 74 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~f-----~---------- 74 (112)
....|-..|.-..+.+++++|+.++++....-.++- -...|.++++.---.|.-+...++| |
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 456677778888888888888888887775211111 2346777777766677666667776 1
Q ss_pred -HHHHhhCChhHHHHHHHHHHh
Q 033770 75 -SACKIHGAVKLSHEVGKRLLE 95 (112)
Q Consensus 75 -~~~~~~g~~~~a~~~~~~m~~ 95 (112)
.-|.+.+..++|.++++.|.+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~K 1558 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLK 1558 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHH
Confidence 566667777777777777775
No 216
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.28 E-value=13 Score=26.22 Aligned_cols=74 Identities=8% Similarity=0.010 Sum_probs=46.7
Q ss_pred ccCcHHHHHHHHHHhhhccCCCcCHHHH----HHHHHHHHhcCChhHHHHHH----------H-------HHHHhhCChh
Q 033770 26 RARLVELGLELFHSLLGEFEVVPIMEHY----GCVVDLLGRAGLLSEANEFL----------W-------SACKIHGAVK 84 (112)
Q Consensus 26 ~~~~~~~a~~~~~~m~~~~g~~p~~~~~----~~li~~~~~~g~~~~A~~~f----------~-------~~~~~~g~~~ 84 (112)
+..++|-|.+-.++|.. + -+-.|- +++|+...-.+.+.+|.=+| | .++...|+++
T Consensus 149 k~~r~d~A~~~lk~mq~---i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~e 224 (299)
T KOG3081|consen 149 KMHRFDLAEKELKKMQQ---I-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYE 224 (299)
T ss_pred HHHHHHHHHHHHHHHHc---c-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHH
Confidence 44455555566666653 1 122333 35555555566677777776 3 5556678999
Q ss_pred HHHHHHHHHHhcCCCCCcc
Q 033770 85 LSHEVGKRLLELQPEHCRR 103 (112)
Q Consensus 85 ~a~~~~~~m~~~~~~~~~~ 103 (112)
+|+.+.++....++.+|.+
T Consensus 225 eAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 225 EAESLLEEALDKDAKDPET 243 (299)
T ss_pred HHHHHHHHHHhccCCCHHH
Confidence 9999999998766666553
No 217
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.16 E-value=4 Score=29.05 Aligned_cols=37 Identities=19% Similarity=0.084 Sum_probs=31.9
Q ss_pred HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhccc
Q 033770 75 SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNVH 111 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~y 111 (112)
+.|..+|.+.+|.++.+....++|-+...+-.|.+++
T Consensus 287 ~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~l 323 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASL 323 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHH
Confidence 8888999999999999999999998888777776654
No 218
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=81.79 E-value=2.5 Score=21.87 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=20.5
Q ss_pred HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770 75 SACKIHGAVKLSHEVGKRLLELQPEHCR 102 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 102 (112)
-++.+.|+.++|.+..+.+.+.+|++.-
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 4667788888888888888888887654
No 219
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=81.77 E-value=6.3 Score=22.29 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=35.9
Q ss_pred HHHHhccCcHHHHHHHHHHhhhccCCCcC-HHHHHHHHHHHHhcCChhHHHHH
Q 033770 21 LTACARARLVELGLELFHSLLGEFEVVPI-MEHYGCVVDLLGRAGLLSEANEF 72 (112)
Q Consensus 21 i~~~~~~~~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~ 72 (112)
+.-| +...-++|+..|....+..-=.|+ -.+...|+.+|+..|.+.+++++
T Consensus 14 lkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 14 LKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 667788899999888753222233 23557899999999999887765
No 220
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=81.58 E-value=7.4 Score=30.84 Aligned_cols=63 Identities=22% Similarity=0.361 Sum_probs=48.5
Q ss_pred CCcCHHHHHHHHHHHHhcCChhHHHHHH-----H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhc
Q 033770 46 VVPIMEHYGCVVDLLGRAGLLSEANEFL-----W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSN 109 (112)
Q Consensus 46 ~~p~~~~~~~li~~~~~~g~~~~A~~~f-----~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~ 109 (112)
+.|-.-.--.+-..+...|-..+|..+| | ..|+..|+.++|.++...-.+ .|+++..|++|-.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGD 465 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhh
Confidence 4444445567788888999999999998 6 788888999999988887766 5667777776643
No 221
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.31 E-value=7.5 Score=24.95 Aligned_cols=56 Identities=14% Similarity=-0.022 Sum_probs=36.6
Q ss_pred HHHHHHHHHH---hccCcHHHHHHHHHHhhhccCCCcCHHHHH-HHHHHHHhcCChhHHHHHH
Q 033770 15 VTFVAVLTAC---ARARLVELGLELFHSLLGEFEVVPIMEHYG-CVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 15 ~t~~~li~~~---~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~-~li~~~~~~g~~~~A~~~f 73 (112)
.+.+.||... .+.++.+++..+++.+.- +.|.....- .--..+.+.|++++|.++|
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlL 67 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLL 67 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3445555444 477889999999999863 445433332 2223467889999999998
No 222
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=81.00 E-value=19 Score=26.35 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=23.5
Q ss_pred cCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHH
Q 033770 27 ARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLL 60 (112)
Q Consensus 27 ~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~ 60 (112)
.|+.++|++++..... ..-.++..+|+.+-..|
T Consensus 195 ~gdre~Al~il~~~l~-~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 195 PGDREKALQILLPVLE-SDENPDPDTLGLLGRIY 227 (374)
T ss_pred CCCHHHHHHHHHHHHh-ccCCCChHHHHHHHHHH
Confidence 7888999999888543 35556777777666555
No 223
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=80.91 E-value=10 Score=23.68 Aligned_cols=40 Identities=15% Similarity=0.200 Sum_probs=30.8
Q ss_pred HHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 33 GLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 33 a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
..+-+..+-. +.+.|++..-.+-++++-|..++-.|.++|
T Consensus 68 vrkglN~l~~-yDlVP~pkvIEaaLRA~RRvNDfa~aVRil 107 (149)
T KOG4077|consen 68 VRKGLNNLFD-YDLVPSPKVIEAALRACRRVNDFATAVRIL 107 (149)
T ss_pred HHHHHHhhhc-cccCCChHHHHHHHHHHHHhccHHHHHHHH
Confidence 3344445553 788888888888889999999988888887
No 224
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=80.75 E-value=12 Score=23.61 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=16.7
Q ss_pred HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770 75 SACKIHGAVKLSHEVGKRLLELQPEHCR 102 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 102 (112)
.++-+.++.+.|...++...+++|.++.
T Consensus 55 yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 55 YAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 4555566666666666666666665543
No 225
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.14 E-value=3.7 Score=17.53 Aligned_cols=18 Identities=22% Similarity=0.183 Sum_probs=10.3
Q ss_pred HHHHHHHhcCChhHHHHH
Q 033770 55 CVVDLLGRAGLLSEANEF 72 (112)
Q Consensus 55 ~li~~~~~~g~~~~A~~~ 72 (112)
.+-..+...|++++|.++
T Consensus 6 ~la~~~~~~G~~~eA~~~ 23 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERL 23 (26)
T ss_pred HHHHHHHHcCCHHHHHHH
Confidence 344556666666666554
No 226
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=79.91 E-value=6 Score=19.84 Aligned_cols=34 Identities=12% Similarity=-0.027 Sum_probs=28.2
Q ss_pred HhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHH
Q 033770 24 CARARLVELGLELFHSLLGEFEVVPIMEHYGCVVD 58 (112)
Q Consensus 24 ~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 58 (112)
.-+.|.++++..++++|.+ .|+..+...+..+++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~-~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQ-AGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHH-cCcccCHHHHHHHHH
Confidence 3456888899999999986 899998888887765
No 227
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=79.76 E-value=11 Score=22.58 Aligned_cols=53 Identities=17% Similarity=0.277 Sum_probs=37.5
Q ss_pred HhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHH
Q 033770 5 MYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDL 59 (112)
Q Consensus 5 M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~ 59 (112)
+-...+.|+.....+.|+||.+.+++..|.++|+..+.+.| +...+|..++.-
T Consensus 36 l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 36 LFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 33456789999999999999999999999999999885333 333377776653
No 228
>PLN02789 farnesyltranstransferase
Probab=79.52 E-value=20 Score=25.55 Aligned_cols=80 Identities=15% Similarity=0.062 Sum_probs=48.6
Q ss_pred HhccC-cHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCCh--hHHHHHH-------------H----HHHHhhCCh
Q 033770 24 CARAR-LVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLL--SEANEFL-------------W----SACKIHGAV 83 (112)
Q Consensus 24 ~~~~~-~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~--~~A~~~f-------------~----~~~~~~g~~ 83 (112)
..+.| ++++++..++++.+ . -.-+...|+----.+.+.|+. +++.+++ | -.+...|+.
T Consensus 81 L~~L~~~l~eeL~~~~~~i~-~-npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~ 158 (320)
T PLN02789 81 LEALDADLEEELDFAEDVAE-D-NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGW 158 (320)
T ss_pred HHHcchhHHHHHHHHHHHHH-H-CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhH
Confidence 33445 57888888888775 2 222445565433334445542 4444444 4 445566788
Q ss_pred hHHHHHHHHHHhcCCCCCcchh
Q 033770 84 KLSHEVGKRLLELQPEHCRRYV 105 (112)
Q Consensus 84 ~~a~~~~~~m~~~~~~~~~~~~ 105 (112)
+++.+.++++.+.+|.+.+.+.
T Consensus 159 ~eeL~~~~~~I~~d~~N~sAW~ 180 (320)
T PLN02789 159 EDELEYCHQLLEEDVRNNSAWN 180 (320)
T ss_pred HHHHHHHHHHHHHCCCchhHHH
Confidence 8899999998888887766443
No 229
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=79.03 E-value=12 Score=29.69 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=17.1
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 033770 3 DEMYEKGLRANEVTFVAVLTACARARLVELGLELFH 38 (112)
Q Consensus 3 ~~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~ 38 (112)
++|++.|-.||.+.... .|+-.|.+.+|-++|.
T Consensus 624 ~~~k~rge~P~~iLlA~---~~Ay~gKF~EAAklFk 656 (1081)
T KOG1538|consen 624 EERKKRGETPNDLLLAD---VFAYQGKFHEAAKLFK 656 (1081)
T ss_pred HHHHhcCCCchHHHHHH---HHHhhhhHHHHHHHHH
Confidence 45556666666554432 2334455555555554
No 230
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.35 E-value=15 Score=23.45 Aligned_cols=65 Identities=20% Similarity=0.182 Sum_probs=43.6
Q ss_pred ccCcHHHHHHHHHHhhhccCCCcC---HHHHHHHHHHHHhcCChhHHHHHH----------------------------H
Q 033770 26 RARLVELGLELFHSLLGEFEVVPI---MEHYGCVVDLLGRAGLLSEANEFL----------------------------W 74 (112)
Q Consensus 26 ~~~~~~~a~~~~~~m~~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~f----------------------------~ 74 (112)
..++.+++..+++.|.- +.|+ ..++-. ..+.+.|++++|.++| |
T Consensus 22 ~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~W 96 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV---LRPNLKELDMFDG--WLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEW 96 (153)
T ss_pred hcCCHHHHHHHHHHHHH---hCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHH
Confidence 46778888888888763 3443 333333 3467788888888888 5
Q ss_pred ----HHHHhhCChhHHHHHHHHHHh
Q 033770 75 ----SACKIHGAVKLSHEVGKRLLE 95 (112)
Q Consensus 75 ----~~~~~~g~~~~a~~~~~~m~~ 95 (112)
......+...++..+.+.+..
T Consensus 97 r~~A~~~le~~~~~~a~~Lv~al~g 121 (153)
T TIGR02561 97 HVHADEVLARDADADAVALVRALLG 121 (153)
T ss_pred HHHHHHHHHhCCCHhHHHHHHHHhc
Confidence 344455677778888777764
No 231
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=77.61 E-value=23 Score=27.18 Aligned_cols=76 Identities=13% Similarity=0.042 Sum_probs=57.1
Q ss_pred HHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH---------H-HHHHh-------hCChhH
Q 033770 23 ACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL---------W-SACKI-------HGAVKL 85 (112)
Q Consensus 23 ~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f---------~-~~~~~-------~g~~~~ 85 (112)
.+.+.|++..|...+.+++. .. +-|...|+=---+|.+.|.+..|.+=. | .+|.+ ..+++.
T Consensus 367 e~Fk~gdy~~Av~~YteAIk-r~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydk 444 (539)
T KOG0548|consen 367 EAFKKGDYPEAVKHYTEAIK-RD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDK 444 (539)
T ss_pred HHHhccCHHHHHHHHHHHHh-cC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999885 33 348888888888999999998888743 3 33333 347788
Q ss_pred HHHHHHHHHhcCCCC
Q 033770 86 SHEVGKRLLELQPEH 100 (112)
Q Consensus 86 a~~~~~~m~~~~~~~ 100 (112)
|.+.|++-.+.+|.+
T Consensus 445 Aleay~eale~dp~~ 459 (539)
T KOG0548|consen 445 ALEAYQEALELDPSN 459 (539)
T ss_pred HHHHHHHHHhcCchh
Confidence 888888888777754
No 232
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.94 E-value=18 Score=26.81 Aligned_cols=71 Identities=10% Similarity=-0.020 Sum_probs=49.2
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH----------------H--HHHHhh
Q 033770 19 AVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL----------------W--SACKIH 80 (112)
Q Consensus 19 ~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f----------------~--~~~~~~ 80 (112)
++-+++.-...+|+.+..+..+++ +=..-|+.-+| +-.+++-.|+..+|+++| | ++|.++
T Consensus 364 smAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~n 441 (557)
T KOG3785|consen 364 SMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRN 441 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhc
Confidence 344455555667777777777765 54555665555 567888889999999998 3 777888
Q ss_pred CChhHHHHHHH
Q 033770 81 GAVKLSHEVGK 91 (112)
Q Consensus 81 g~~~~a~~~~~ 91 (112)
+.++.|-.++-
T Consensus 442 kkP~lAW~~~l 452 (557)
T KOG3785|consen 442 KKPQLAWDMML 452 (557)
T ss_pred CCchHHHHHHH
Confidence 88877765543
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=76.82 E-value=17 Score=27.30 Aligned_cols=85 Identities=16% Similarity=0.070 Sum_probs=57.7
Q ss_pred CCCHHHHHHHH-HHHhccCcHHHHHHHHHHhhhc-cCCC-cCHHHHHHHHHHHHhcCChhHHHHHH--------H-----
Q 033770 11 RANEVTFVAVL-TACARARLVELGLELFHSLLGE-FEVV-PIMEHYGCVVDLLGRAGLLSEANEFL--------W----- 74 (112)
Q Consensus 11 ~p~~~t~~~li-~~~~~~~~~~~a~~~~~~m~~~-~g~~-p~~~~~~~li~~~~~~g~~~~A~~~f--------~----- 74 (112)
-||...|.-.- +.+...|++++|.+.|++.... ...+ .....+=-+.-.+.-.+++++|.+.| |
T Consensus 263 yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y 342 (468)
T PF10300_consen 263 YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFY 342 (468)
T ss_pred CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHH
Confidence 46666665433 3345679999999999975521 1111 12333345666688899999999999 4
Q ss_pred -----HHHHhhCCh-------hHHHHHHHHHHh
Q 033770 75 -----SACKIHGAV-------KLSHEVGKRLLE 95 (112)
Q Consensus 75 -----~~~~~~g~~-------~~a~~~~~~m~~ 95 (112)
.++...|+. ++|.++|+++..
T Consensus 343 ~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 343 AYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 555667777 889999988874
No 234
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=76.82 E-value=14 Score=26.00 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHh
Q 033770 50 MEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLE 95 (112)
Q Consensus 50 ~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~ 95 (112)
+.++..++..+..+|+++.+.+.+ | .+|.+.|+...|+..++.+.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 456677888999999999999988 4 899999999999999999985
No 235
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=76.20 E-value=10 Score=20.47 Aligned_cols=51 Identities=14% Similarity=0.042 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHh
Q 033770 10 LRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGR 62 (112)
Q Consensus 10 ~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~ 62 (112)
+.|+...++-++..+++...++++...+.+..+ .|. .+..+|---++.++|
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~-~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQ-RGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTS-S-HHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCC-CCHHHHHHHHHHHHH
Confidence 467888999999999999999999999999997 565 567777777776655
No 236
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=75.75 E-value=15 Score=22.22 Aligned_cols=64 Identities=16% Similarity=0.114 Sum_probs=40.6
Q ss_pred hHHHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 2 VDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 2 ~~~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
++.+...+-.-+....|.++..|++.++.++...+++.-. .+.+ ..+++.+-+.|.+++|.-++
T Consensus 30 Le~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~yd~-----~~~~~~c~~~~l~~~a~~Ly 93 (143)
T PF00637_consen 30 LEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---NYDL-----DKALRLCEKHGLYEEAVYLY 93 (143)
T ss_dssp HHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---SS-C-----THHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---ccCH-----HHHHHHHHhcchHHHHHHHH
Confidence 3455556656778899999999999988777777765321 2222 33566666666666655543
No 237
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=75.30 E-value=3.4 Score=17.78 Aligned_cols=25 Identities=20% Similarity=0.411 Sum_probs=18.7
Q ss_pred CChhHHHHHHHHHHhcCCCCCcchh
Q 033770 81 GAVKLSHEVGKRLLELQPEHCRRYV 105 (112)
Q Consensus 81 g~~~~a~~~~~~m~~~~~~~~~~~~ 105 (112)
|+.+.+..+|+.+....|..+..+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~ 25 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWL 25 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHH
Confidence 5678899999999887776655544
No 238
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=75.27 E-value=22 Score=26.79 Aligned_cols=32 Identities=25% Similarity=0.152 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhh
Q 033770 10 LRANEVTFVAVLTACARARLVELGLELFHSLL 41 (112)
Q Consensus 10 ~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~ 41 (112)
++-|+...+++=+.+...|+.+.|...|++..
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~ 259 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTL 259 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHh
Confidence 34455566666666666666666666666644
No 239
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=75.25 E-value=35 Score=26.14 Aligned_cols=94 Identities=16% Similarity=0.144 Sum_probs=66.6
Q ss_pred ChHHHhhcC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHH-HHHHHHHHhcCChhHHHHHH-----
Q 033770 1 MVDEMYEKG-LRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHY-GCVVDLLGRAGLLSEANEFL----- 73 (112)
Q Consensus 1 l~~~M~~~g-~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~f----- 73 (112)
+|-+.++.| +.|++..++++|.-++. |+...|..+|+-=.. -.||+..| +--+.-+.+-++-..|..+|
T Consensus 419 ~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~---~f~d~~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 419 LFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLL---KFPDSTLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred HHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence 466777888 78999999999998886 778889999865321 23677766 56777778888888888888
Q ss_pred -------------H-HHHHhhCChhHHHHHHHHHHhcCC
Q 033770 74 -------------W-SACKIHGAVKLSHEVGKRLLELQP 98 (112)
Q Consensus 74 -------------~-~~~~~~g~~~~a~~~~~~m~~~~~ 98 (112)
| ..=.+-|++..+..+-+.|.++-|
T Consensus 495 r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 495 RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 2 222345666666655555555444
No 240
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=74.33 E-value=13 Score=23.60 Aligned_cols=39 Identities=28% Similarity=0.355 Sum_probs=31.9
Q ss_pred HHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcC
Q 033770 59 LLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQ 97 (112)
Q Consensus 59 ~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~ 97 (112)
+.++.|++++|.+.| | .++.-.|+.++|..=+++..++.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa 107 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELA 107 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 578999999999999 3 66777789999988888777644
No 241
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=74.09 E-value=40 Score=26.28 Aligned_cols=60 Identities=3% Similarity=0.029 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
+-|.-+|+.||.-+... .++++....+++.+ -+.-....|..=|++-.+..+++..+++|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF 76 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLF 76 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44889999999977665 99999999999974 45447778899999999999999999999
No 242
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=73.53 E-value=13 Score=26.25 Aligned_cols=65 Identities=11% Similarity=0.314 Sum_probs=44.1
Q ss_pred hHHHhhcCCCCCHHHHHH--HHHHHhccC----cHHHHHHHHHHhhhccCCC--cCHHHHHHHHHHHHhcCChhH
Q 033770 2 VDEMYEKGLRANEVTFVA--VLTACARAR----LVELGLELFHSLLGEFEVV--PIMEHYGCVVDLLGRAGLLSE 68 (112)
Q Consensus 2 ~~~M~~~g~~p~~~t~~~--li~~~~~~~----~~~~a~~~~~~m~~~~g~~--p~~~~~~~li~~~~~~g~~~~ 68 (112)
++.|.+.|++-+..+|-+ +|....... ...+|..+++.|++++.+- ++-+++.+|+.. ...++++
T Consensus 85 y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 85 YEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 577889999999988876 333332222 3678999999999754433 566777777766 4455443
No 243
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=73.25 E-value=18 Score=25.49 Aligned_cols=86 Identities=16% Similarity=0.053 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhc--C-ChhHHHHHH--------------H-
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRA--G-LLSEANEFL--------------W- 74 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~--g-~~~~A~~~f--------------~- 74 (112)
|...|--|=..|...|+.++|..-+..-.+-.|=+| ..+..+-.++... | .-.++.++| |
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~--~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNP--EILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 445555555566666666666666655543222222 2222222222111 1 123344444 2
Q ss_pred --HHHHhhCChhHHHHHHHHHHhcCCCC
Q 033770 75 --SACKIHGAVKLSHEVGKRLLELQPEH 100 (112)
Q Consensus 75 --~~~~~~g~~~~a~~~~~~m~~~~~~~ 100 (112)
.++-..|++.+|...|+.|.+..|.+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 45556677777777777777655543
No 244
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=73.11 E-value=8.7 Score=28.87 Aligned_cols=46 Identities=22% Similarity=0.324 Sum_probs=37.2
Q ss_pred HHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhhCC
Q 033770 35 ELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFLWSACKIHGA 82 (112)
Q Consensus 35 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~g~ 82 (112)
.+|....+ +.+.||++.+.-+...|.+.=-+|-|.++ |..|++-|+
T Consensus 460 ~L~~Hl~k-l~l~PDiylidwiftlyskslpldlacRI-wDvy~rdge 505 (586)
T KOG2223|consen 460 KLFTHLKK-LELTPDIYLIDWIFTLYSKSLPLDLACRI-WDVYCRDGE 505 (586)
T ss_pred HHHHHHHh-ccCCCchhhHHHHHHHHhccCChHHhhhh-hheeeecch
Confidence 55666665 88999999999999999999999999999 555555543
No 245
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=72.67 E-value=24 Score=24.89 Aligned_cols=42 Identities=12% Similarity=0.076 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHhc--cCcHHHHHHHHHHhhhccCCCcCHHHHHH
Q 033770 13 NEVTFVAVLTACAR--ARLVELGLELFHSLLGEFEVVPIMEHYGC 55 (112)
Q Consensus 13 ~~~t~~~li~~~~~--~~~~~~a~~~~~~m~~~~g~~p~~~~~~~ 55 (112)
...++.++|..... ...++....+++.|++ .|+.-+..+|-+
T Consensus 59 ~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~-~gFk~~~y~~la 102 (297)
T PF13170_consen 59 HRFILAALLDISFEDPEEAFKEVLDIYEKLKE-AGFKRSEYLYLA 102 (297)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-hccCccChHHHH
Confidence 46777777776666 2336788899999997 799998888865
No 246
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.58 E-value=34 Score=26.77 Aligned_cols=21 Identities=5% Similarity=-0.081 Sum_probs=14.2
Q ss_pred HHHHhhCChhHHHHHHHHHHh
Q 033770 75 SACKIHGAVKLSHEVGKRLLE 95 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~ 95 (112)
..|-+.|++++|..+++.+.+
T Consensus 118 QvlYrl~~ydealdiY~~L~k 138 (652)
T KOG2376|consen 118 QVLYRLERYDEALDIYQHLAK 138 (652)
T ss_pred HHHHHHhhHHHHHHHHHHHHh
Confidence 455566777777777777754
No 247
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=72.54 E-value=5.9 Score=16.02 Aligned_cols=23 Identities=30% Similarity=0.280 Sum_probs=15.3
Q ss_pred HHHhhCChhHHHHHHHHHHhcCC
Q 033770 76 ACKIHGAVKLSHEVGKRLLELQP 98 (112)
Q Consensus 76 ~~~~~g~~~~a~~~~~~m~~~~~ 98 (112)
.+...++.+.|...++...+..|
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 10 AYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHhhHHHHHHHHHHHHccCC
Confidence 44556777777777777666555
No 248
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=72.38 E-value=6.2 Score=20.93 Aligned_cols=25 Identities=16% Similarity=0.072 Sum_probs=20.1
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhh
Q 033770 18 VAVLTACARARLVELGLELFHSLLG 42 (112)
Q Consensus 18 ~~li~~~~~~~~~~~a~~~~~~m~~ 42 (112)
-.+|.++.+.|++++|.++...+..
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3578899999999999998888775
No 249
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=72.14 E-value=21 Score=29.68 Aligned_cols=65 Identities=15% Similarity=0.037 Sum_probs=42.4
Q ss_pred cCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH----------H-------HHHHhhCChhHHHH
Q 033770 27 ARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL----------W-------SACKIHGAVKLSHE 88 (112)
Q Consensus 27 ~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f----------~-------~~~~~~g~~~~a~~ 88 (112)
.++..++..-|+... -..| |...|..+-.+|.++|++.-|.++| | ..-+..|...+|..
T Consensus 575 a~n~h~aV~~fQsAL---R~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 575 AHNLHGAVCEFQSAL---RTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred ccchhhHHHHHHHHh---cCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 334444444444432 2334 7777888888899999999999988 2 34456677777777
Q ss_pred HHHHHH
Q 033770 89 VGKRLL 94 (112)
Q Consensus 89 ~~~~m~ 94 (112)
..+.+.
T Consensus 652 ~l~~ii 657 (1238)
T KOG1127|consen 652 ALGLII 657 (1238)
T ss_pred HHHHHH
Confidence 766665
No 250
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=71.98 E-value=21 Score=22.16 Aligned_cols=46 Identities=13% Similarity=-0.028 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHH-------H-------------H--------HHHHhhCChhHHHHHHHHHH
Q 033770 49 IMEHYGCVVDLLGRAGLLSEANEF-------L-------------W--------SACKIHGAVKLSHEVGKRLL 94 (112)
Q Consensus 49 ~~~~~~~li~~~~~~g~~~~A~~~-------f-------------~--------~~~~~~g~~~~a~~~~~~m~ 94 (112)
|...+..|-.++.+.|++++++.- | | .++-..|+.++|..-|+...
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 455667778888999998876543 3 6 55666788999988877544
No 251
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=71.67 E-value=3.7 Score=25.69 Aligned_cols=31 Identities=10% Similarity=0.066 Sum_probs=24.0
Q ss_pred cCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHH
Q 033770 27 ARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLL 60 (112)
Q Consensus 27 ~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~ 60 (112)
.|.-.+|..+|.+|.. .|-.|| .|+.|+...
T Consensus 108 ygsk~DaY~VF~kML~-~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLE-RGNPPD--DWDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHh-CCCCCc--cHHHHHHHh
Confidence 4555678999999997 899987 488887653
No 252
>PLN02789 farnesyltranstransferase
Probab=71.16 E-value=35 Score=24.32 Aligned_cols=96 Identities=13% Similarity=0.127 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHhccCc--HHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H--H
Q 033770 13 NEVTFVAVLTACARARL--VELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W--S 75 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~--~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~--~ 75 (112)
|..+|+.--....+.|. .+++..+.+++.+ .. .-|...|+-.--.+.+.|++++|.+.+ | +
T Consensus 105 nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~-~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R 182 (320)
T PLN02789 105 NYQIWHHRRWLAEKLGPDAANKELEFTRKILS-LD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQR 182 (320)
T ss_pred chHHhHHHHHHHHHcCchhhHHHHHHHHHHHH-hC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHH
Confidence 44456644333444454 3667788877774 22 237888888888888889999999888 5 3
Q ss_pred HHHh--h---CCh----hHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770 76 ACKI--H---GAV----KLSHEVGKRLLELQPEHCRRYVVLSNV 110 (112)
Q Consensus 76 ~~~~--~---g~~----~~a~~~~~~m~~~~~~~~~~~~~l~~~ 110 (112)
++.. . |.. +.+....++.....|.+.+.+..+..+
T Consensus 183 ~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~l 226 (320)
T PLN02789 183 YFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGL 226 (320)
T ss_pred HHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Confidence 3322 1 222 356666667777889988877655443
No 253
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=70.72 E-value=9.7 Score=24.65 Aligned_cols=34 Identities=12% Similarity=-0.090 Sum_probs=31.6
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 033770 9 GLRANEVTFVAVLTACARARLVELGLELFHSLLG 42 (112)
Q Consensus 9 g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 42 (112)
...|+..+|..++.++...|+.++|.++.+++..
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999875
No 254
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=70.69 E-value=35 Score=27.18 Aligned_cols=44 Identities=11% Similarity=0.241 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHH
Q 033770 15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLG 61 (112)
Q Consensus 15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~ 61 (112)
+.|++|-+-|.++|++++|..++++-.+. + .++--++-+-++|+
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v-~tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQT--V-MTVRDFTQIFDAYA 292 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh--h-eehhhHHHHHHHHH
Confidence 35667777777777777777777765541 1 23333444555554
No 255
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=69.55 E-value=23 Score=21.56 Aligned_cols=18 Identities=17% Similarity=0.134 Sum_probs=11.3
Q ss_pred HHHHhhCChhHHHHHHHH
Q 033770 75 SACKIHGAVKLSHEVGKR 92 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~ 92 (112)
.-+...|++++|.++++.
T Consensus 107 ~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 107 EFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHTT-HHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHh
Confidence 555666777777777654
No 256
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=69.19 E-value=4.9 Score=30.94 Aligned_cols=24 Identities=17% Similarity=0.634 Sum_probs=17.2
Q ss_pred hHHHhhcCCCCCHHHHHH-----HHHHHh
Q 033770 2 VDEMYEKGLRANEVTFVA-----VLTACA 25 (112)
Q Consensus 2 ~~~M~~~g~~p~~~t~~~-----li~~~~ 25 (112)
++.+...|++||.+||++ +++.|.
T Consensus 256 leDl~~LgIkpd~~TyTSDyF~~i~dycv 284 (712)
T KOG1147|consen 256 LEDLSLLGIKPDRVTYTSDYFDEIMDYCV 284 (712)
T ss_pred HHHHHHhCcCcceeeechhhHHHHHHHHH
Confidence 345566799999999985 555544
No 257
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=68.47 E-value=23 Score=23.78 Aligned_cols=54 Identities=9% Similarity=0.147 Sum_probs=39.5
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhhccC--------------CCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 19 AVLTACARARLVELGLELFHSLLGEFE--------------VVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 19 ~li~~~~~~~~~~~a~~~~~~m~~~~g--------------~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
+++-.|-+..++.+++.+.+.|.+ .. ..|.-..-|.-...|.++|.+|.|..++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~e-l~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vL 204 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHE-LQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVL 204 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHH
Confidence 566778888889999999998875 22 2344455667777777888888887777
No 258
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=68.37 E-value=23 Score=25.95 Aligned_cols=53 Identities=8% Similarity=-0.026 Sum_probs=33.7
Q ss_pred HHHhcCChhHHHHHH--------------------H-HHHHh---hCChhHHHHHHHHHH-hcCCCCCcchhhhhccc
Q 033770 59 LLGRAGLLSEANEFL--------------------W-SACKI---HGAVKLSHEVGKRLL-ELQPEHCRRYVVLSNVH 111 (112)
Q Consensus 59 ~~~~~g~~~~A~~~f--------------------~-~~~~~---~g~~~~a~~~~~~m~-~~~~~~~~~~~~l~~~y 111 (112)
.|-...+++...+++ | -++.+ .|+.++|..++..+. ...+.++.++.++--+|
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 366666666666665 2 34445 678888888887743 45566677777765544
No 259
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=67.81 E-value=37 Score=26.08 Aligned_cols=62 Identities=10% Similarity=0.133 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
.-|...|..-|.-|-+.+..-+...+|.+|...++-.||+=++.+. .-|-..-+++.|..+|
T Consensus 102 ~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~-wefe~n~ni~saRalf 163 (568)
T KOG2396|consen 102 NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAK-WEFEINLNIESARALF 163 (568)
T ss_pred CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhh-hHHhhccchHHHHHHH
Confidence 3477777777777777666777777777777544555554333322 2233333355555555
No 260
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=66.76 E-value=19 Score=23.04 Aligned_cols=62 Identities=15% Similarity=0.083 Sum_probs=43.2
Q ss_pred HhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhH
Q 033770 5 MYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSE 68 (112)
Q Consensus 5 M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 68 (112)
+++.|++++.--- .++.........-.|.++++.+.+ .+..++..|----++.+.+.|-+.+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~-~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLRE-AEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHh-hCCCCCcchHHHHHHHHHHCCCEEE
Confidence 4566877666555 344444444556689999999986 6777777776667788888877655
No 261
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=66.60 E-value=20 Score=26.82 Aligned_cols=64 Identities=19% Similarity=0.162 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHHHHh--ccCcHHHHHHHHHHhhh-------------------------------ccCCCcCH-HHHHH
Q 033770 10 LRANEVTFVAVLTACA--RARLVELGLELFHSLLG-------------------------------EFEVVPIM-EHYGC 55 (112)
Q Consensus 10 ~~p~~~t~~~li~~~~--~~~~~~~a~~~~~~m~~-------------------------------~~g~~p~~-~~~~~ 55 (112)
+.-|....-.|+.+-. -.|+.++|.+-|+.|.. ..+..|.. -.+.+
T Consensus 114 lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~A 193 (531)
T COG3898 114 LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARA 193 (531)
T ss_pred hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHH
Confidence 3445555555555443 34667777777776664 11222321 23456
Q ss_pred HHHHHHhcCChhHHHHHH
Q 033770 56 VVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 56 li~~~~~~g~~~~A~~~f 73 (112)
.+...|..|+++.|++++
T Consensus 194 tLe~r~~~gdWd~AlkLv 211 (531)
T COG3898 194 TLEARCAAGDWDGALKLV 211 (531)
T ss_pred HHHHHHhcCChHHHHHHH
Confidence 777777777777777776
No 262
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=66.47 E-value=17 Score=25.16 Aligned_cols=68 Identities=18% Similarity=0.145 Sum_probs=31.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHhhCChhHHHHHHHHHH
Q 033770 16 TFVAVLTACARARLVELGLELFHSLLGEFEVVPIM-EHYGCVVDLLGRAGLLSEANEFLWSACKIHGAVKLSHEVGKRLL 94 (112)
Q Consensus 16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~f~~~~~~~g~~~~a~~~~~~m~ 94 (112)
-|+.-+... +.|++++|.+.|+.+.+++-..|-. .+--.++-++- +.++.+.|...+++..
T Consensus 37 LY~~g~~~L-~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Y-----------------k~~~y~~A~~~~drFi 98 (254)
T COG4105 37 LYNEGLTEL-QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYY-----------------KNGEYDLALAYIDRFI 98 (254)
T ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH-----------------hcccHHHHHHHHHHHH
Confidence 344433332 3466666666666665433333321 12223333333 4455555555555555
Q ss_pred hcCCCCC
Q 033770 95 ELQPEHC 101 (112)
Q Consensus 95 ~~~~~~~ 101 (112)
++-|.++
T Consensus 99 ~lyP~~~ 105 (254)
T COG4105 99 RLYPTHP 105 (254)
T ss_pred HhCCCCC
Confidence 5555443
No 263
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=65.82 E-value=30 Score=28.59 Aligned_cols=31 Identities=6% Similarity=0.260 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 033770 12 ANEVTFVAVLTACARARLVELGLELFHSLLG 42 (112)
Q Consensus 12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 42 (112)
-+...|..|-+.|.+..++|-|.-.+..|..
T Consensus 755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~ 785 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKN 785 (1416)
T ss_pred hhhHHHHHHHHHhhhhccccHHHHhhhhhhh
Confidence 3567888999999988888888877777764
No 264
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=65.64 E-value=30 Score=28.55 Aligned_cols=58 Identities=17% Similarity=0.222 Sum_probs=43.5
Q ss_pred hccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-----------H----HHHHhhCChhHHHHH
Q 033770 25 ARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-----------W----SACKIHGAVKLSHEV 89 (112)
Q Consensus 25 ~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-----------~----~~~~~~g~~~~a~~~ 89 (112)
.+.|.+++|+.++.+.++ + ..|=+.|-..|++++|.++- | ..+...+|.+.|++-
T Consensus 811 ieLgMlEeA~~lYr~ckR-~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR-Y---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH-H---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHH
Confidence 477889999999988886 3 33667788899999999997 2 344445677777776
Q ss_pred HHH
Q 033770 90 GKR 92 (112)
Q Consensus 90 ~~~ 92 (112)
|++
T Consensus 881 yEK 883 (1416)
T KOG3617|consen 881 YEK 883 (1416)
T ss_pred HHh
Confidence 665
No 265
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=65.60 E-value=29 Score=26.01 Aligned_cols=25 Identities=24% Similarity=0.106 Sum_probs=12.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 49 IMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 49 ~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
+...|..|=+...+.|+++-|++.|
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~ 370 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECY 370 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3445555555555555555555554
No 266
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=64.64 E-value=35 Score=21.94 Aligned_cols=64 Identities=17% Similarity=0.042 Sum_probs=36.1
Q ss_pred HhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH----HhhCChhHHHHHHHHHHh
Q 033770 24 CARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFLWSAC----KIHGAVKLSHEVGKRLLE 95 (112)
Q Consensus 24 ~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~g~~~~a~~~~~~m~~ 95 (112)
+.+.|++++|.++|+.+..+ .|...-..+|+..|....+-.+ |+.+ ...+--..+..+.+.+.+
T Consensus 54 ~i~r~~w~dA~rlLr~l~~~---~~~~p~~kALlA~CL~~~~D~~-----Wr~~A~evle~~~d~~a~~Lv~~Ll~ 121 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEER---APGFPYAKALLALCLYALGDPS-----WRRYADEVLESGADPDARALVRALLA 121 (160)
T ss_pred HHHhCCHHHHHHHHHHHhcc---CCCChHHHHHHHHHHHHcCChH-----HHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 36788899999999988653 2444444555555544433333 5222 223335566666666653
No 267
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=64.07 E-value=30 Score=22.35 Aligned_cols=87 Identities=14% Similarity=0.195 Sum_probs=59.7
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcC--ChhHHHHHHH------
Q 033770 3 DEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAG--LLSEANEFLW------ 74 (112)
Q Consensus 3 ~~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~f~------ 74 (112)
+.+.+.|++|+...|.-+|+.+.+.|.... ...+.+ +++-||...-.+.+-.+...- -.+-|.++++
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq-~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~~~ 92 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQ-YHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGTAY 92 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHh-hcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhhhH
Confidence 345567899999999999999999998654 344454 787787777765554443321 1344455553
Q ss_pred ----HHHHhhCChhHHHHHHHHHH
Q 033770 75 ----SACKIHGAVKLSHEVGKRLL 94 (112)
Q Consensus 75 ----~~~~~~g~~~~a~~~~~~m~ 94 (112)
+.+-..|++-+|.+..+...
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~ 116 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYH 116 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC
Confidence 56777899999998887753
No 268
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=63.97 E-value=62 Score=24.55 Aligned_cols=83 Identities=12% Similarity=0.087 Sum_probs=60.0
Q ss_pred CCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhhCChhHHHH
Q 033770 10 LRANEV-TFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFLWSACKIHGAVKLSHE 88 (112)
Q Consensus 10 ~~p~~~-t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~g~~~~a~~ 88 (112)
+.|+-. ..+.+-.-|...|...++..++++-. ...||....+.|=+.+.-...+++|++.|+.+....-+-+++.+
T Consensus 433 ~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L---~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~ 509 (564)
T KOG1174|consen 433 INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHL---IIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLR 509 (564)
T ss_pred cCCccHHHHHHHHHHHHhhCccchHHHHHHHHH---hhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHH
Confidence 345432 33444556677788888888887754 45688888888888888888888888887667666667777777
Q ss_pred HHHHHHh
Q 033770 89 VGKRLLE 95 (112)
Q Consensus 89 ~~~~m~~ 95 (112)
=.+.|.+
T Consensus 510 Gl~~lEK 516 (564)
T KOG1174|consen 510 GLRLLEK 516 (564)
T ss_pred HHHHHHh
Confidence 7777764
No 269
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=63.54 E-value=35 Score=27.08 Aligned_cols=60 Identities=10% Similarity=0.016 Sum_probs=43.5
Q ss_pred cCCCCCHHHHHHHHHHHhccCc----HHHHHHHHHHhhh---ccCCCcCHHHH---HHHHHHHHhcCChh
Q 033770 8 KGLRANEVTFVAVLTACARARL----VELGLELFHSLLG---EFEVVPIMEHY---GCVVDLLGRAGLLS 67 (112)
Q Consensus 8 ~g~~p~~~t~~~li~~~~~~~~----~~~a~~~~~~m~~---~~g~~p~~~~~---~~li~~~~~~g~~~ 67 (112)
.|++.|...|..||.++....+ +|++-++.+-+++ ..|+.+.++.- .++..-|+..|+.+
T Consensus 211 dgyplN~~LYe~LL~~~FD~~de~~vidE~dEvlellK~tW~~LGIt~~lHn~cf~WVlF~qyv~tge~~ 280 (677)
T PF05664_consen 211 DGYPLNVRLYEKLLFSVFDILDEGQVIDEVDEVLELLKKTWSILGITQTLHNVCFAWVLFRQYVATGEPD 280 (677)
T ss_pred cCCCccHHHHHHHHHHHhcccccchHHhhHHHHHHHHHHHhHHhCCCHHHHHHHHHHHHHHHHHhcCCHH
Confidence 5889999999999999987544 5777777777764 36777644322 36777788888543
No 270
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.82 E-value=29 Score=27.14 Aligned_cols=38 Identities=21% Similarity=0.213 Sum_probs=32.1
Q ss_pred HHHHhhCChhHHHHHHHHHHhcCCC-CCcchhhhhcccC
Q 033770 75 SACKIHGAVKLSHEVGKRLLELQPE-HCRRYVVLSNVHT 112 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~l~~~ya 112 (112)
....+.|-+..|.+..+-+.+++|. +|-....++.+||
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~A 388 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYA 388 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHH
Confidence 7778899999999999999999997 7877767777664
No 271
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.42 E-value=45 Score=22.39 Aligned_cols=75 Identities=13% Similarity=0.086 Sum_probs=53.1
Q ss_pred HHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHH-----HHHhcCChhHHHHHH-------H---------HHHHh
Q 033770 21 LTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVD-----LLGRAGLLSEANEFL-------W---------SACKI 79 (112)
Q Consensus 21 i~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~-----~~~~~g~~~~A~~~f-------~---------~~~~~ 79 (112)
=..+...+++++|..-+..-.. .|.-..+.+|+. .....|.+|+|++++ | +.+..
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~ 171 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHH
Confidence 3556678888888877765442 133344444443 456678888888888 6 78888
Q ss_pred hCChhHHHHHHHHHHhcCCC
Q 033770 80 HGAVKLSHEVGKRLLELQPE 99 (112)
Q Consensus 80 ~g~~~~a~~~~~~m~~~~~~ 99 (112)
.|+-+.|...+++-.+..++
T Consensus 172 kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 172 KGDKQEARAAYEKALESDAS 191 (207)
T ss_pred cCchHHHHHHHHHHHHccCC
Confidence 99999999999988875443
No 272
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=61.91 E-value=54 Score=23.19 Aligned_cols=60 Identities=17% Similarity=0.083 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHH----------------H-HHHH-hh--CChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770 49 IMEHYGCVVDLLGRAGLLSEANEFL----------------W-SACK-IH--GAVKLSHEVGKRLLELQPEHCRRYVVLS 108 (112)
Q Consensus 49 ~~~~~~~li~~~~~~g~~~~A~~~f----------------~-~~~~-~~--g~~~~a~~~~~~m~~~~~~~~~~~~~l~ 108 (112)
|...|-.|=..|.+.|+.+.|..-| | +++. .. .+..++..+|++..+.+|+++..-.+|.
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA 234 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLA 234 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 8999999999999999999999998 2 2222 22 2567888999999999999887655553
No 273
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=61.20 E-value=42 Score=21.69 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCChhHHHHHH
Q 033770 53 YGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 53 ~~~li~~~~~~g~~~~A~~~f 73 (112)
+..+++.+...|++-+|.++.
T Consensus 92 ~~~iievLL~~g~vl~ALr~a 112 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYA 112 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHH
Confidence 444556666666666666665
No 274
>PRK09462 fur ferric uptake regulator; Provisional
Probab=61.17 E-value=37 Score=21.05 Aligned_cols=63 Identities=13% Similarity=0.191 Sum_probs=43.8
Q ss_pred HHhhcCCCCCHHHHHHHHHHHhcc-CcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhH
Q 033770 4 EMYEKGLRANEVTFVAVLTACARA-RLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSE 68 (112)
Q Consensus 4 ~M~~~g~~p~~~t~~~li~~~~~~-~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 68 (112)
.+++.|++++.--- .++...... +..-.|.++++.+.+ .+...+..|----++.+.+.|-+.+
T Consensus 7 ~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~-~~~~i~~aTVYR~L~~L~e~Gli~~ 70 (148)
T PRK09462 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLID-MGEEIGLATVYRVLNQFDDAGIVTR 70 (148)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHh-hCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 45667877665544 334444443 456689999999986 6777777777777888888887754
No 275
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=61.09 E-value=38 Score=21.63 Aligned_cols=39 Identities=15% Similarity=0.089 Sum_probs=30.5
Q ss_pred HhcCChhHHHHHH---------------H--HHHHhhCChhHHHHHHHHHHhcCCC
Q 033770 61 GRAGLLSEANEFL---------------W--SACKIHGAVKLSHEVGKRLLELQPE 99 (112)
Q Consensus 61 ~~~g~~~~A~~~f---------------~--~~~~~~g~~~~a~~~~~~m~~~~~~ 99 (112)
.+.++++++..++ + .-+...|++++|.++|+++.+..+.
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~ 76 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA 76 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC
Confidence 3478888888887 1 4667899999999999999864443
No 276
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=60.37 E-value=16 Score=25.96 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=23.3
Q ss_pred CCCcCHHHH-HHHHHHHHhcCChhHHHHHH
Q 033770 45 EVVPIMEHY-GCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 45 g~~p~~~~~-~~li~~~~~~g~~~~A~~~f 73 (112)
.+.||..+| |.-|+.-.+.||+++|++++
T Consensus 251 ~v~~dTe~Yy~~aI~~AVk~gDi~KAL~Ll 280 (303)
T PRK10564 251 PMLNDTESYFNQAIKQAVKKGDVDKALKLL 280 (303)
T ss_pred ccCchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 466777777 78888888888888888885
No 277
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=60.24 E-value=13 Score=29.56 Aligned_cols=41 Identities=22% Similarity=0.249 Sum_probs=33.3
Q ss_pred HHHHHHHhcCChhHHHHHH----------------H-----------HHHHhhCChhHHHHHHHHHHh
Q 033770 55 CVVDLLGRAGLLSEANEFL----------------W-----------SACKIHGAVKLSHEVGKRLLE 95 (112)
Q Consensus 55 ~li~~~~~~g~~~~A~~~f----------------~-----------~~~~~~g~~~~a~~~~~~m~~ 95 (112)
+++..+.+.|+|++|..+- | .+|.+.|+-.+|.++++++..
T Consensus 778 siVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 778 SLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 4677778888888887776 3 788999999999999998864
No 278
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=59.75 E-value=31 Score=25.46 Aligned_cols=75 Identities=12% Similarity=0.045 Sum_probs=49.0
Q ss_pred HHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH---------H-HHHHhhC-------Chh
Q 033770 23 ACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL---------W-SACKIHG-------AVK 84 (112)
Q Consensus 23 ~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f---------~-~~~~~~g-------~~~ 84 (112)
-|.+.|.+++|...+.+-. .+.| |.+++.---.+|.+..++.-|+.=. | .+|.+.+ +..
T Consensus 106 ~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 3567889999998886643 3446 7788877777888888777665544 4 6666654 444
Q ss_pred HHHHHHHHHHhcCCCC
Q 033770 85 LSHEVGKRLLELQPEH 100 (112)
Q Consensus 85 ~a~~~~~~m~~~~~~~ 100 (112)
+|.+=.+...++.|.+
T Consensus 183 EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHhHHHHHhhCccc
Confidence 4444444445566653
No 279
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=59.64 E-value=50 Score=22.04 Aligned_cols=58 Identities=22% Similarity=0.205 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
...+.++.-|...|+++.|.+.|.-+.+..++..- ..|+.=+.-+.+.+.-....+.+
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR-~~W~iG~eIL~~~~~~~~~~~fl 99 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIR-SLWGIGAEILMRRGEQNSELEFL 99 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChH-hcchHHHHHHHcCCCcchHHHHH
Confidence 34678999999999999999999999974333322 23555555555555544443443
No 280
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=59.48 E-value=51 Score=22.09 Aligned_cols=58 Identities=12% Similarity=-0.011 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhc--cCCCcCHHHHHHHHHHHHhcCChhHHH
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGE--FEVVPIMEHYGCVVDLLGRAGLLSEAN 70 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~--~g~~p~~~~~~~li~~~~~~g~~~~A~ 70 (112)
+....-.-|..|-...+.+++.+++-+..+- .+=.+|+..+.+|.+.|-+.|+.+.|-
T Consensus 139 ~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4444445556666678888888887776631 222567888888888888888888763
No 281
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=59.38 E-value=71 Score=23.71 Aligned_cols=80 Identities=18% Similarity=0.140 Sum_probs=60.3
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH--------------H---HHHHhh
Q 033770 19 AVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL--------------W---SACKIH 80 (112)
Q Consensus 19 ~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f--------------~---~~~~~~ 80 (112)
..+..+.-+|+...+......+.+ +.| |...|..--++|..-|++.+|.-=+ | .-+-..
T Consensus 160 ~ql~s~~~~GD~~~ai~~i~~llE---i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v 236 (504)
T KOG0624|consen 160 QQLKSASGSGDCQNAIEMITHLLE---IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTV 236 (504)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHh---cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhh
Confidence 345556667888888888777763 456 7777778888899999988887655 3 455567
Q ss_pred CChhHHHHHHHHHHhcCCCCC
Q 033770 81 GAVKLSHEVGKRLLELQPEHC 101 (112)
Q Consensus 81 g~~~~a~~~~~~m~~~~~~~~ 101 (112)
|+.+.++...++..+++|+..
T Consensus 237 gd~~~sL~~iRECLKldpdHK 257 (504)
T KOG0624|consen 237 GDAENSLKEIRECLKLDPDHK 257 (504)
T ss_pred hhHHHHHHHHHHHHccCcchh
Confidence 889999998899888888763
No 282
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=58.84 E-value=21 Score=17.58 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=17.5
Q ss_pred HHHHHhccCcHHHHHHHHHHhhh
Q 033770 20 VLTACARARLVELGLELFHSLLG 42 (112)
Q Consensus 20 li~~~~~~~~~~~a~~~~~~m~~ 42 (112)
|=.+|...|+.+.|..+++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44677888888888888887774
No 283
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=58.39 E-value=71 Score=24.08 Aligned_cols=68 Identities=12% Similarity=0.006 Sum_probs=48.3
Q ss_pred ccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHH--hcCChhHHHHHH------------------------------
Q 033770 26 RARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLG--RAGLLSEANEFL------------------------------ 73 (112)
Q Consensus 26 ~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~--~~g~~~~A~~~f------------------------------ 73 (112)
-.|+-..|.++-.+-.+ -+..|....--|+.+-. -.|+.++|.+-|
T Consensus 96 gAGda~lARkmt~~~~~--llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 96 GAGDASLARKMTARASK--LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred ccCchHHHHHHHHHHHh--hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHH
Confidence 45777777777665442 35556666555555543 358999999888
Q ss_pred ---------------H------HHHHhhCChhHHHHHHHHHHh
Q 033770 74 ---------------W------SACKIHGAVKLSHEVGKRLLE 95 (112)
Q Consensus 74 ---------------~------~~~~~~g~~~~a~~~~~~m~~ 95 (112)
| ...+..|+++.|+++.+.-.+
T Consensus 174 r~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 174 RHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 5 677889999999999987664
No 284
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=58.15 E-value=16 Score=16.84 Aligned_cols=24 Identities=8% Similarity=0.153 Sum_probs=18.7
Q ss_pred cHHHHHHHHHHhhhccCCCcCHHHHHH
Q 033770 29 LVELGLELFHSLLGEFEVVPIMEHYGC 55 (112)
Q Consensus 29 ~~~~a~~~~~~m~~~~g~~p~~~~~~~ 55 (112)
.+|.|..++++... +.|++.+|--
T Consensus 2 E~dRAR~IyeR~v~---~hp~~k~Wik 25 (32)
T PF02184_consen 2 EFDRARSIYERFVL---VHPEVKNWIK 25 (32)
T ss_pred hHHHHHHHHHHHHH---hCCCchHHHH
Confidence 57899999999874 4588887753
No 285
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=57.22 E-value=15 Score=21.76 Aligned_cols=22 Identities=41% Similarity=0.525 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHH
Q 033770 52 HYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 52 ~~~~li~~~~~~g~~~~A~~~f 73 (112)
-|..|+..|-..|..++|.+++
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll 62 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELL 62 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHH
Confidence 4667777777777777777773
No 286
>COG5210 GTPase-activating protein [General function prediction only]
Probab=57.00 E-value=35 Score=25.73 Aligned_cols=53 Identities=15% Similarity=0.130 Sum_probs=28.3
Q ss_pred hHHHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHH
Q 033770 2 VDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGC 55 (112)
Q Consensus 2 ~~~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~ 55 (112)
++.|++.|+.+..+++.-++..+.+.-.++.+.++++.+-- .|+.--...+-+
T Consensus 365 ~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~-eg~~~l~~~~~~ 417 (496)
T COG5210 365 YEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFL-EGSSMLFQLALA 417 (496)
T ss_pred HHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHH-hccHHHHHHHHH
Confidence 34455555555555555555555555555555555555554 454443333333
No 287
>PF14518 Haem_oxygenas_2: Iron-containing redox enzyme; PDB: 3BJD_B.
Probab=56.60 E-value=36 Score=19.54 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhcC
Q 033770 51 EHYGCVVDLLGRAG 64 (112)
Q Consensus 51 ~~~~~li~~~~~~g 64 (112)
..|..+++++-+.|
T Consensus 79 ~~~~~~~~~l~r~g 92 (106)
T PF14518_consen 79 QIYRRLIKGLRRLG 92 (106)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC
Confidence 33555555555555
No 288
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=56.51 E-value=49 Score=21.00 Aligned_cols=57 Identities=16% Similarity=0.053 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
.-+...|+...+.|.-|.-..+...+.+ .-.|++...-.+-.+|.+.|+..+|.+++
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~k--n~~~~p~~L~kia~Ay~klg~~r~~~ell 143 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKK--NEEINPEFLVKIANAYKKLGNTREANELL 143 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhh--ccCCCHHHHHHHHHHHHHhcchhhHHHHH
Confidence 3344556666666666665555555441 23456666666777777777777777775
No 289
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=55.61 E-value=44 Score=20.12 Aligned_cols=81 Identities=16% Similarity=0.096 Sum_probs=41.6
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-----H---
Q 033770 3 DEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-----W--- 74 (112)
Q Consensus 3 ~~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-----~--- 74 (112)
+.+...| ..+....|.+|..|++... ++....+.. . ++.....-+++.+-+.+.++++.-++ |
T Consensus 31 e~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~--~-----~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~~~~A 101 (140)
T smart00299 31 ESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN--K-----SNHYDIEKVGKLCEKAKLYEEAVELYKKDGNFKDA 101 (140)
T ss_pred HHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh--c-----cccCCHHHHHHHHHHcCcHHHHHHHHHhhcCHHHH
Confidence 3344445 3677889999999998643 333444442 1 11222223455555555544444443 1
Q ss_pred -HHHHhh-CChhHHHHHHHH
Q 033770 75 -SACKIH-GAVKLSHEVGKR 92 (112)
Q Consensus 75 -~~~~~~-g~~~~a~~~~~~ 92 (112)
.....+ ++.+.|.+.+++
T Consensus 102 l~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 102 IVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHHHcccCHHHHHHHHHh
Confidence 222223 667777766654
No 290
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=55.54 E-value=27 Score=23.72 Aligned_cols=24 Identities=17% Similarity=-0.060 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHH
Q 033770 50 MEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 50 ~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
....--|-.-|.+.|++++|.++|
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l 201 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLL 201 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 444445777899999999999998
No 291
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=55.31 E-value=47 Score=22.92 Aligned_cols=54 Identities=15% Similarity=0.072 Sum_probs=39.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 17 FVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 17 ~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
.+.-|+..-+.+.+.+|+...+.=++. +| |.-+=-.++..||-.|++++|..-+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka---kPtda~~RhflfqLlcvaGdw~kAl~Ql 58 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA---KPTDAGGRHFLFQLLCVAGDWEKALAQL 58 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc---CCccccchhHHHHHHhhcchHHHHHHHH
Confidence 344567777888888888887765542 35 4444568999999999999998766
No 292
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=54.52 E-value=56 Score=21.06 Aligned_cols=47 Identities=15% Similarity=0.020 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHH-------------------H-HHHHhhCChhHHHHHHHHHHh
Q 033770 49 IMEHYGCVVDLLGRAGLLSEANEFL-------------------W-SACKIHGAVKLSHEVGKRLLE 95 (112)
Q Consensus 49 ~~~~~~~li~~~~~~g~~~~A~~~f-------------------~-~~~~~~g~~~~a~~~~~~m~~ 95 (112)
-...+..+-+-|++.|+.++|.+.+ + +.+...+++........+...
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3466778999999999999999999 1 555667788887777777664
No 293
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=54.44 E-value=1e+02 Score=24.03 Aligned_cols=85 Identities=15% Similarity=0.071 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH---H-------------
Q 033770 11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL---W------------- 74 (112)
Q Consensus 11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f---~------------- 74 (112)
.|+.+-.-+.|- ...|+++.+.+....... -+.....+-.++++..-+.|++++|..+- .
T Consensus 322 ~p~~i~l~~~i~--~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~ia 397 (831)
T PRK15180 322 DPVLIQLRSVIF--SHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVA 397 (831)
T ss_pred CchhhHHHHHHH--HHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeee
Confidence 455544444443 456666666666655432 23345556666677767777777666554 0
Q ss_pred -HHHHhhCChhHHHHHHHHHHhcCCC
Q 033770 75 -SACKIHGAVKLSHEVGKRLLELQPE 99 (112)
Q Consensus 75 -~~~~~~g~~~~a~~~~~~m~~~~~~ 99 (112)
.+-...|-++++..-|+....+.|+
T Consensus 398 a~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 398 AGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred cccHHHHhHHHHHHHHHHHHhccCCh
Confidence 2223456677777777777665543
No 294
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=53.52 E-value=54 Score=20.56 Aligned_cols=20 Identities=10% Similarity=0.169 Sum_probs=10.4
Q ss_pred HHHHhhCChhHHHHHHHHHH
Q 033770 75 SACKIHGAVKLSHEVGKRLL 94 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~ 94 (112)
++|.+-+|+-.|.++|+-++
T Consensus 92 RA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 92 RACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHhccHHHHHHHHHHHH
Confidence 45555555555555555544
No 295
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=53.39 E-value=75 Score=27.10 Aligned_cols=71 Identities=15% Similarity=-0.004 Sum_probs=44.3
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH--H--------HHHHhhCChhHHHHH
Q 033770 20 VLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL--W--------SACKIHGAVKLSHEV 89 (112)
Q Consensus 20 li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f--~--------~~~~~~g~~~~a~~~ 89 (112)
.+.+|-.+|++++|+.+..++.. |----..+--.|+.-+...|+.-+|-++. + .-+++...+++|.++
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~ka~~~~eAlrv 1048 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCKAKEWEEALRV 1048 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHH
Confidence 45666677888888888777763 21112223367778888888888888877 1 445555556666655
Q ss_pred HHH
Q 033770 90 GKR 92 (112)
Q Consensus 90 ~~~ 92 (112)
...
T Consensus 1049 a~~ 1051 (1265)
T KOG1920|consen 1049 ASK 1051 (1265)
T ss_pred HHh
Confidence 443
No 296
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=52.86 E-value=22 Score=22.66 Aligned_cols=45 Identities=13% Similarity=-0.009 Sum_probs=22.0
Q ss_pred cHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 29 LVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 29 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
|.++=+.++..+-+...+...+..--.-|.--.+.++++.|.++-
T Consensus 69 D~~KRL~iLfd~ln~g~Ls~~v~~~L~~L~~aL~~~d~~~A~~Ih 113 (157)
T PF07304_consen 69 DIEKRLNILFDHLNNGKLSKPVVDKLHQLAQALQARDYDAADEIH 113 (157)
T ss_dssp HHHHHHHHHHHHHHHT-S-HHHHHHHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 444333333333331234444444444444556778888888887
No 297
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=52.42 E-value=17 Score=29.50 Aligned_cols=65 Identities=15% Similarity=0.152 Sum_probs=49.3
Q ss_pred ccCcHHHHHHHHHHhhhccC-CCcCHHHHHHHHHHHHhcCChhHHHHHHH-HHHHhhCChhHHHHHHHHHHhcCCCCC
Q 033770 26 RARLVELGLELFHSLLGEFE-VVPIMEHYGCVVDLLGRAGLLSEANEFLW-SACKIHGAVKLSHEVGKRLLELQPEHC 101 (112)
Q Consensus 26 ~~~~~~~a~~~~~~m~~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~f~-~~~~~~g~~~~a~~~~~~m~~~~~~~~ 101 (112)
+-|+-++|+.+.-.|.+..| +.|| +||-||++-+ .+|. +.|...+..+.|.+.+++.-+..|...
T Consensus 255 r~GDRakAL~~~l~lve~eg~vapD---------m~Cl~GRIYK--DmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~ 321 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLVEKEGPVAPD---------MYCLCGRIYK--DMFIASNYTDAESLNHAIEWYRKAFEVEPLEY 321 (1226)
T ss_pred CCccHHHHHHHHHHHHHhcCCCCCc---------eeeeechhhh--hhhhccCCcchhhHHHHHHHHHHHhccCchhh
Confidence 56888888888877775444 6777 6899999765 4443 677777888899999999888888643
No 298
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=50.51 E-value=1.4e+02 Score=24.72 Aligned_cols=72 Identities=19% Similarity=0.150 Sum_probs=54.9
Q ss_pred HhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHH--HhcCChhHHHHHH----------------H-HHHHhhCChh
Q 033770 24 CARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLL--GRAGLLSEANEFL----------------W-SACKIHGAVK 84 (112)
Q Consensus 24 ~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~--~~~g~~~~A~~~f----------------~-~~~~~~g~~~ 84 (112)
...++++.+|..-.++..++++-.| |.-+++++ .|.|+.++|.+++ . ..|...+..+
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~----~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNAL----YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhh
Confidence 3456788889888888876543333 44444543 6889999999888 1 8889999999
Q ss_pred HHHHHHHHHHhcCCC
Q 033770 85 LSHEVGKRLLELQPE 99 (112)
Q Consensus 85 ~a~~~~~~m~~~~~~ 99 (112)
+|..+++...+..|.
T Consensus 95 ~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 95 EAVHLYERANQKYPS 109 (932)
T ss_pred HHHHHHHHHHhhCCc
Confidence 999999999887776
No 299
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=50.30 E-value=29 Score=24.79 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=15.6
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhh
Q 033770 19 AVLTACARARLVELGLELFHSLLG 42 (112)
Q Consensus 19 ~li~~~~~~~~~~~a~~~~~~m~~ 42 (112)
.|++.|.+.|.+++|.+++...++
T Consensus 111 ~Lm~~ci~~g~y~eALel~~~~~~ 134 (338)
T PF04124_consen 111 QLMDTCIRNGNYSEALELSAHVRR 134 (338)
T ss_pred HHHHHHHhcccHhhHHHHHHHHHH
Confidence 456677777777777766666543
No 300
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=49.68 E-value=98 Score=22.45 Aligned_cols=49 Identities=6% Similarity=0.001 Sum_probs=37.6
Q ss_pred hcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHH
Q 033770 7 EKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVD 58 (112)
Q Consensus 7 ~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 58 (112)
++|+..|.-.+..+++ ...|++.+|+.+++.... .|-..+...-+.++.
T Consensus 203 ~E~v~~d~~al~~I~~--~S~GdLR~Ait~Lqsls~-~gk~It~~~~~e~~~ 251 (346)
T KOG0989|consen 203 KEGVDIDDDALKLIAK--ISDGDLRRAITTLQSLSL-LGKRITTSLVNEELA 251 (346)
T ss_pred HhCCCCCHHHHHHHHH--HcCCcHHHHHHHHHHhhc-cCcccchHHHHHHHh
Confidence 4688888888888776 567999999999999986 566556555555555
No 301
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=49.35 E-value=35 Score=19.92 Aligned_cols=48 Identities=19% Similarity=0.137 Sum_probs=34.9
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhH
Q 033770 20 VLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSE 68 (112)
Q Consensus 20 li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 68 (112)
++......+..-.|.++++.+.+ .+..++..|---.++.+.+.|-+.+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~-~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRK-KGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 45555555555678888999886 5777777777777888888887664
No 302
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=48.73 E-value=2.9 Score=21.90 Aligned_cols=26 Identities=8% Similarity=0.121 Sum_probs=21.0
Q ss_pred ChHHHhhcCCCCCHHHHHHHHHHHhc
Q 033770 1 MVDEMYEKGLRANEVTFVAVLTACAR 26 (112)
Q Consensus 1 l~~~M~~~g~~p~~~t~~~li~~~~~ 26 (112)
+|+.|....+.|.+..||-.|+-|..
T Consensus 14 vFK~~pSr~YD~~Tr~W~F~L~Dy~~ 39 (55)
T PF07443_consen 14 VFKQMPSRNYDPKTRKWNFSLEDYST 39 (55)
T ss_pred HHHcCcccccCccceeeeeeHHHHHH
Confidence 47888888888999888888777664
No 303
>PRK04841 transcriptional regulator MalT; Provisional
Probab=48.47 E-value=1.4e+02 Score=23.96 Aligned_cols=56 Identities=13% Similarity=-0.015 Sum_probs=28.7
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhc---cCC-CcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 18 VAVLTACARARLVELGLELFHSLLGE---FEV-VPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 18 ~~li~~~~~~~~~~~a~~~~~~m~~~---~g~-~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
+.+-..+...|++++|...+++.... .|- .+.....+.+-..+...|++++|.+.+
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 554 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQ 554 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 33444455667777777666665420 111 011223334444566667777776665
No 304
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=48.12 E-value=1.1e+02 Score=22.73 Aligned_cols=44 Identities=11% Similarity=-0.062 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHH----------------------H---HHHHhhCChhHHHHHHHHHH
Q 033770 51 EHYGCVVDLLGRAGLLSEANEFL----------------------W---SACKIHGAVKLSHEVGKRLL 94 (112)
Q Consensus 51 ~~~~~li~~~~~~g~~~~A~~~f----------------------~---~~~~~~g~~~~a~~~~~~m~ 94 (112)
.+...|++.+|-.|++..|.+++ | =+|...++..+|.++|..+.
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888887 1 45567778888888888775
No 305
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=48.02 E-value=21 Score=21.39 Aligned_cols=34 Identities=18% Similarity=0.184 Sum_probs=20.3
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHH
Q 033770 20 VLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVD 58 (112)
Q Consensus 20 li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 58 (112)
-++.....|++++|.++-+.+ ..||.+.|-+|-.
T Consensus 45 RlsSLmNrG~Yq~Al~l~~~~-----~~pdlepw~ALce 78 (115)
T TIGR02508 45 RLSSLMNRGDYQSALQLGNKL-----CYPDLEPWLALCE 78 (115)
T ss_pred HHHHHHccchHHHHHHhcCCC-----CCchHHHHHHHHH
Confidence 344555667777776665443 3477777766644
No 306
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=47.11 E-value=1.3e+02 Score=23.12 Aligned_cols=78 Identities=15% Similarity=0.114 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH---------------------
Q 033770 15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL--------------------- 73 (112)
Q Consensus 15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f--------------------- 73 (112)
+.-+-+|+||.. .+++..........+..|-.|-..-+-+++ .-+.|++++|.+.+
T Consensus 47 vl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~--~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~ 123 (549)
T PF07079_consen 47 VLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALV--AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQ 123 (549)
T ss_pred HHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHH--HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHH
Confidence 334567888876 566666666666665455444444444432 34678899999998
Q ss_pred -----H------HHHHhhCChhHHHHHHHHHHh
Q 033770 74 -----W------SACKIHGAVKLSHEVGKRLLE 95 (112)
Q Consensus 74 -----~------~~~~~~g~~~~a~~~~~~m~~ 95 (112)
| ++....|++.++..+++.|..
T Consensus 124 l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~ 156 (549)
T PF07079_consen 124 LFSDFFLDEIEAHSLIETGRFSEGRAILNRIIE 156 (549)
T ss_pred HhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 2 777888999999999999985
No 307
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.13 E-value=1.2e+02 Score=22.48 Aligned_cols=62 Identities=8% Similarity=-0.054 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHH----HHHHHHHhcCChhHHHHHH
Q 033770 10 LRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYG----CVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 10 ~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~----~li~~~~~~g~~~~A~~~f 73 (112)
.+-|...++-.=++|+-.|+.+..+..++++.- ...||.+.|. ..--++-++|-+++|++.-
T Consensus 133 ~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A 198 (491)
T KOG2610|consen 133 YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYDDAEKQA 198 (491)
T ss_pred CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccchhHHHHH
Confidence 456777777777888888888888888888773 4556654443 4444556888888888876
No 308
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=45.99 E-value=77 Score=22.26 Aligned_cols=37 Identities=19% Similarity=0.377 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC
Q 033770 11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPI 49 (112)
Q Consensus 11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~ 49 (112)
.|.....-.+|.+|.+ +++++|.+++..+=. .|+.|.
T Consensus 236 ~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~-lgysp~ 272 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACLK-RNIDEALKILAELWK-LGYSPE 272 (333)
T ss_pred CCChHHHHHHHHHHHh-ccHHHHHHHHHHHHH-cCCCHH
Confidence 3555555666666554 667777777777665 677764
No 309
>PRK04841 transcriptional regulator MalT; Provisional
Probab=45.45 E-value=1.6e+02 Score=23.68 Aligned_cols=72 Identities=13% Similarity=0.089 Sum_probs=51.6
Q ss_pred HHhccCcHHHHHHHHHHhhhccCCCcC----HHHHHHHHHHHHhcCChhHHHHHH-----------------H------H
Q 033770 23 ACARARLVELGLELFHSLLGEFEVVPI----MEHYGCVVDLLGRAGLLSEANEFL-----------------W------S 75 (112)
Q Consensus 23 ~~~~~~~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~f-----------------~------~ 75 (112)
.+...|++++|...+++... .--..+ ....+.+-..+...|++++|...+ | .
T Consensus 461 ~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 461 VAINDGDPEEAERLAELALA-ELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHh-cCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 34578999999999988764 211112 133455666678899999999887 1 4
Q ss_pred HHHhhCChhHHHHHHHHHHh
Q 033770 76 ACKIHGAVKLSHEVGKRLLE 95 (112)
Q Consensus 76 ~~~~~g~~~~a~~~~~~m~~ 95 (112)
.+...|+++.|...+++...
T Consensus 540 ~~~~~G~~~~A~~~~~~al~ 559 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQ 559 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 55678999999999888765
No 310
>PRK10941 hypothetical protein; Provisional
Probab=44.80 E-value=1.1e+02 Score=21.42 Aligned_cols=49 Identities=10% Similarity=-0.111 Sum_probs=28.4
Q ss_pred HHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcc
Q 033770 55 CVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRR 103 (112)
Q Consensus 55 ~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 103 (112)
.|-.+|.+.++++.|.++. | -.|.+.|....|..=++...+..|++|..
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 3445566666666666655 2 34555666666666666666555655543
No 311
>TIGR02328 conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown.
Probab=44.73 E-value=13 Score=22.49 Aligned_cols=15 Identities=20% Similarity=0.492 Sum_probs=11.7
Q ss_pred ChHHHhhcCCCCCHH
Q 033770 1 MVDEMYEKGLRANEV 15 (112)
Q Consensus 1 l~~~M~~~g~~p~~~ 15 (112)
+.++|.+.|++||..
T Consensus 57 v~~EM~~RGY~~~~~ 71 (120)
T TIGR02328 57 VMEEMATRGYHVSKQ 71 (120)
T ss_pred HHHHHHHcCCCCChh
Confidence 357888889888873
No 312
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=44.21 E-value=27 Score=23.20 Aligned_cols=44 Identities=23% Similarity=0.265 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhhccCCCcCHH------HHHHHHHHHHhcCChhHHHHHH
Q 033770 30 VELGLELFHSLLGEFEVVPIME------HYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 30 ~~~a~~~~~~m~~~~g~~p~~~------~~~~li~~~~~~g~~~~A~~~f 73 (112)
++.|..+++.+.++....-+.. .=-..+-.|.+.|.+++|.+++
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiL 134 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVL 134 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 6777777777775322210111 1123344566777777777776
No 313
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=43.70 E-value=62 Score=19.84 Aligned_cols=17 Identities=24% Similarity=0.180 Sum_probs=13.1
Q ss_pred HHHHhhCChhHHHHHHH
Q 033770 75 SACKIHGAVKLSHEVGK 91 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~ 91 (112)
.-+-..|++.+|.++++
T Consensus 107 ~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 107 QLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 56667788888888876
No 314
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=43.68 E-value=69 Score=20.44 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=28.2
Q ss_pred HHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHH
Q 033770 34 LELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEF 72 (112)
Q Consensus 34 ~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 72 (112)
.+++..+.+..|+.|......-++..+++.=.++.+.++
T Consensus 151 p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~ri 189 (199)
T smart00164 151 PDLYKHLKDKLGIDPSLYALRWFLTLFARELPLEIVLRI 189 (199)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHhhCCHHHHHHH
Confidence 355666652167888888888888888887777777777
No 315
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=43.65 E-value=1.2e+02 Score=22.00 Aligned_cols=54 Identities=17% Similarity=0.068 Sum_probs=38.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHH
Q 033770 16 TFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEF 72 (112)
Q Consensus 16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~ 72 (112)
+++.+-++|..+|.+.+|.++.++... +.| +...|-.|+..++..|+--+|.+-
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~lt---ldpL~e~~nk~lm~~la~~gD~is~~kh 335 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALT---LDPLSEQDNKGLMASLATLGDEISAIKH 335 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhh---cChhhhHHHHHHHHHHHHhccchhhhhH
Confidence 445566788888999999988887653 334 556666888888888885555443
No 316
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=43.54 E-value=80 Score=19.67 Aligned_cols=63 Identities=25% Similarity=0.180 Sum_probs=42.0
Q ss_pred HHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhH
Q 033770 4 EMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSE 68 (112)
Q Consensus 4 ~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 68 (112)
.+++.|++++.-=- .++....+.++.-.|..+++.+.. .+...+..|----++.+...|-+.+
T Consensus 11 ~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~-~~p~islaTVYr~L~~l~e~Glv~~ 73 (145)
T COG0735 11 RLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELRE-EGPGISLATVYRTLKLLEEAGLVHR 73 (145)
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHH-hCCCCCHhHHHHHHHHHHHCCCEEE
Confidence 45566776554332 456666666666889999999986 5666666665556677777776554
No 317
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=43.51 E-value=50 Score=25.23 Aligned_cols=53 Identities=11% Similarity=0.016 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCC----cCHHHHHHHHHHHHhcCCh
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVV----PIMEHYGCVVDLLGRAGLL 66 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~----p~~~~~~~li~~~~~~g~~ 66 (112)
|-+-=++..++....|++++|+.+..+|.. .-++ =++.+||-++-+++|+=-+
T Consensus 127 df~l~~i~a~sLIe~g~f~EgR~iLn~i~~-~llkrE~~w~~d~yd~~vlmlsrSYfL 183 (549)
T PF07079_consen 127 DFFLDEIEAHSLIETGRFSEGRAILNRIIE-RLLKRECEWNSDMYDRAVLMLSRSYFL 183 (549)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHH-HHhhhhhcccHHHHHHHHHHHhHHHHH
Confidence 344445677888899999999999999985 2333 5889999887777765433
No 318
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.43 E-value=1.2e+02 Score=21.70 Aligned_cols=84 Identities=10% Similarity=0.109 Sum_probs=59.1
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH--------------H---------
Q 033770 18 VAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL--------------W--------- 74 (112)
Q Consensus 18 ~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f--------------~--------- 74 (112)
++++...--.|.+.-...++.+.++ +.-+.++..-..|.+.-.+.|+.+.|...| .
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~-~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIK-YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHH-hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3455555455666666677777775 454557777777777788899999999998 0
Q ss_pred HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770 75 SACKIHGAVKLSHEVGKRLLELQPEHCR 102 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 102 (112)
..|.-.++...|.+.+.++.+.+|.++.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~ 287 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAV 287 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchh
Confidence 3344556788888889888887776654
No 319
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=43.38 E-value=94 Score=22.56 Aligned_cols=41 Identities=17% Similarity=0.130 Sum_probs=24.0
Q ss_pred hHHHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 033770 2 VDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLG 42 (112)
Q Consensus 2 ~~~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 42 (112)
++.|++.++.|.-++|-=+.-..++.=.+.+..++++.+..
T Consensus 266 ~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 266 WRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 45556566666666655544455555556666666666654
No 320
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=42.34 E-value=1.1e+02 Score=20.79 Aligned_cols=37 Identities=8% Similarity=-0.056 Sum_probs=22.7
Q ss_pred HHHHhcCChhHHHHHHH---HHHHhhCChhHHHHHHHHHH
Q 033770 58 DLLGRAGLLSEANEFLW---SACKIHGAVKLSHEVGKRLL 94 (112)
Q Consensus 58 ~~~~~~g~~~~A~~~f~---~~~~~~g~~~~a~~~~~~m~ 94 (112)
.-|.+.|+..-+..+-| .-|...|++++|.++|+.+.
T Consensus 166 ~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 166 EQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444455444443334 66677788888888887774
No 321
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=42.32 E-value=88 Score=24.21 Aligned_cols=77 Identities=14% Similarity=0.102 Sum_probs=56.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-H--------------HHH-Hh
Q 033770 16 TFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-W--------------SAC-KI 79 (112)
Q Consensus 16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-~--------------~~~-~~ 79 (112)
..+-=|.++.+.|.++..++++..=.. ..+ |+...-++-++.-+|.|+.-.|+-+| | --| ..
T Consensus 132 ~LsrQLhasvRt~nlet~LRll~lGA~-~N~-~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~ 209 (669)
T KOG0818|consen 132 DLSKQLHSSVRTGNLETCLRLLSLGAQ-ANF-FHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQ 209 (669)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHcccc-cCC-CCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHh
Confidence 344558899999999999998755442 222 57778889999999999999999888 2 223 34
Q ss_pred hCChhHHHHHHHHHH
Q 033770 80 HGAVKLSHEVGKRLL 94 (112)
Q Consensus 80 ~g~~~~a~~~~~~m~ 94 (112)
.|.-+.|+++.+.+-
T Consensus 210 ~gH~~laeRl~e~~y 224 (669)
T KOG0818|consen 210 GGHHELAERLVEIQY 224 (669)
T ss_pred cCchHHHHHHHHHHH
Confidence 556677777766554
No 322
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=42.23 E-value=88 Score=23.60 Aligned_cols=74 Identities=14% Similarity=0.074 Sum_probs=50.3
Q ss_pred ccCcHHHHHHHHHHhhhccCCC----cCHHHHHHHHHHHHhcCChhHHHHHH-------------H--------HHHHhh
Q 033770 26 RARLVELGLELFHSLLGEFEVV----PIMEHYGCVVDLLGRAGLLSEANEFL-------------W--------SACKIH 80 (112)
Q Consensus 26 ~~~~~~~a~~~~~~m~~~~g~~----p~~~~~~~li~~~~~~g~~~~A~~~f-------------~--------~~~~~~ 80 (112)
..|++.+-...+....+..-+. --.+.-|+|++.|...+.++.|.++. | .-.+..
T Consensus 181 ~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiq 260 (493)
T KOG2581|consen 181 LEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQ 260 (493)
T ss_pred hhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhh
Confidence 4455544444444433212222 23455688899999999999999998 3 555677
Q ss_pred CChhHHHHHHHHHHhcCCC
Q 033770 81 GAVKLSHEVGKRLLELQPE 99 (112)
Q Consensus 81 g~~~~a~~~~~~m~~~~~~ 99 (112)
++...|.+.|-......|.
T Consensus 261 ldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 261 LDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred cchhHHHHHHHHHHHhCcc
Confidence 8899999988888876774
No 323
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=42.05 E-value=28 Score=18.80 Aligned_cols=46 Identities=20% Similarity=0.031 Sum_probs=35.6
Q ss_pred ccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHH
Q 033770 26 RARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEF 72 (112)
Q Consensus 26 ~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 72 (112)
..++.+.+.+++++... .|+.|.....+.++.+.-+.|+..+.-++
T Consensus 13 ~~~d~~~~~~~~~~~l~-~g~~~~~i~~~~l~p~m~~iG~~w~~~~~ 58 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALA-QGYPPEDIIEEILMPAMEEIGELWEEGEI 58 (79)
T ss_dssp HTT-CCHHHHHHHHHHH-CSSSTTHHHHHTHHHHHHHHHHHHHTTSS
T ss_pred HhCCHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 45888899999999997 68999888888899988888776553333
No 324
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=41.49 E-value=58 Score=20.68 Aligned_cols=39 Identities=8% Similarity=-0.020 Sum_probs=30.1
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHH
Q 033770 18 VAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVD 58 (112)
Q Consensus 18 ~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 58 (112)
..++-| -..|.+.+...+.+.|+. .||......|+-+++
T Consensus 114 GvL~~a-k~kgLisk~Kpild~LI~-~GF~iS~~~~eeiL~ 152 (157)
T COG2405 114 GVLALA-KSKGLISKDKPILDELIE-KGFRISRSILEEILR 152 (157)
T ss_pred HHHHHH-HHcCcccchHHHHHHHHH-hcCcccHHHHHHHHH
Confidence 334444 445888899999999996 899999999986654
No 325
>TIGR03236 dnd_assoc_1 dnd system-associated protein 1. A DNA sulfur modification system, dnd (degradation during electrophoresis), is sparsely and sporadically distributed among the bacteria. Members of this protein family are strictly limited to species with the dnd operon, and are found close to the dnd operon on the chromosomes of Bacillus cereus E33L, Hahella chejuensis KCTC 2396, and Pseudoalteromonas haloplanktis TAC12.
Probab=41.00 E-value=34 Score=24.99 Aligned_cols=49 Identities=16% Similarity=0.026 Sum_probs=37.0
Q ss_pred HHHHHHhccC-cHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhH
Q 033770 19 AVLTACARAR-LVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSE 68 (112)
Q Consensus 19 ~li~~~~~~~-~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 68 (112)
.|+.+.|-.. +-=.-.++|++..+ .|+-.|-.+-..||.-|-|.|.+|+
T Consensus 300 LLLT~l~Vg~~~Kl~l~~L~~eFek-RGvffD~~SkqeiI~fyEkin~lEK 349 (363)
T TIGR03236 300 LLLTNLAVGEREKLPLNRLIEEFSK-RGVAFDRQSQQMLIEFYERHGNLER 349 (363)
T ss_pred HHHHHHHhCCcccchHHHHHHHHHh-cCceeCchhHHHHHHHHHHhCcccc
Confidence 3455544322 22234578889887 7999999999999999999999886
No 326
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.20 E-value=2e+02 Score=23.84 Aligned_cols=44 Identities=9% Similarity=0.074 Sum_probs=21.9
Q ss_pred CcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 28 RLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 28 ~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
..+..--.+++.+.+ .|+. +...-+.|+..|.+.++.++-.+++
T Consensus 411 q~IknLt~YLe~L~~-~gla-~~dhttlLLncYiKlkd~~kL~efI 454 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHK-KGLA-NSDHTTLLLNCYIKLKDVEKLTEFI 454 (933)
T ss_pred HHHHHHHHHHHHHHH-cccc-cchhHHHHHHHHHHhcchHHHHHHH
Confidence 333333344444443 3442 4444555666666666655555544
No 327
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=39.97 E-value=37 Score=20.69 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=21.5
Q ss_pred cCcHHHHHHHHHHhhhccCCCcCHHHHH
Q 033770 27 ARLVELGLELFHSLLGEFEVVPIMEHYG 54 (112)
Q Consensus 27 ~~~~~~a~~~~~~m~~~~g~~p~~~~~~ 54 (112)
.|+...|.++.+.+.. .|..|-.+.|.
T Consensus 10 ~G~~~ra~riL~~L~~-Eg~ep~~lLw~ 36 (125)
T PF14840_consen 10 AGDAKRALRILQGLQA-EGVEPPILLWA 36 (125)
T ss_dssp TT-HHHHHHHHHHHHH-TT--HHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-CCccHHHHHHH
Confidence 4899999999999997 79999998885
No 328
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=39.59 E-value=90 Score=25.32 Aligned_cols=49 Identities=10% Similarity=0.114 Sum_probs=39.8
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhhc-cCCCcCHHHHHHHHHHHHhcCChh
Q 033770 19 AVLTACARARLVELGLELFHSLLGE-FEVVPIMEHYGCVVDLLGRAGLLS 67 (112)
Q Consensus 19 ~li~~~~~~~~~~~a~~~~~~m~~~-~g~~p~~~~~~~li~~~~~~g~~~ 67 (112)
+|+.||...|++-.+.++++...-. .|=+.=...||.-|+-+.+.|.++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~ 82 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFE 82 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCcc
Confidence 7999999999999999999988731 244445677888899999999865
No 329
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.39 E-value=2e+02 Score=23.07 Aligned_cols=41 Identities=17% Similarity=0.118 Sum_probs=30.1
Q ss_pred ccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 26 RARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 26 ~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
+.|+++.|.++-.+.. +..-|..|=++....|++..|.+-|
T Consensus 649 ~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~ 689 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN-------SEVKWRQLGDAALSAGELPLASECF 689 (794)
T ss_pred hcCcHHHHHHHHHhhc-------chHHHHHHHHHHhhcccchhHHHHH
Confidence 5666777766654432 4677888888888888888888888
No 330
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=38.97 E-value=1.4e+02 Score=21.22 Aligned_cols=81 Identities=11% Similarity=0.128 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHHHhc-c-CcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH---------------
Q 033770 11 RANEVTFVAVLTACAR-A-RLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL--------------- 73 (112)
Q Consensus 11 ~p~~~t~~~li~~~~~-~-~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f--------------- 73 (112)
--|..+-.-+++.... . ..+..-.++.+.+..+.|-.++..+-.++|..+++.+++.+-.++.
T Consensus 161 i~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rp 240 (292)
T PF13929_consen 161 IFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRP 240 (292)
T ss_pred eeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCch
Confidence 3455555666666554 2 2344445666666666778889999999999999999999988885
Q ss_pred H----HHHHhhCChhHHHHHHH
Q 033770 74 W----SACKIHGAVKLSHEVGK 91 (112)
Q Consensus 74 ~----~~~~~~g~~~~a~~~~~ 91 (112)
| +.-..+|+..-...+..
T Consensus 241 W~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 241 WAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHHHHHcCCHHHHHHHhh
Confidence 4 55566677665554443
No 331
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=38.91 E-value=1e+02 Score=20.60 Aligned_cols=43 Identities=12% Similarity=0.188 Sum_probs=31.5
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCC
Q 033770 19 AVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGL 65 (112)
Q Consensus 19 ~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 65 (112)
..+-.|.+.|.+++|.+++++..++ |+....-.-+....+..+
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~d----~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFSD----PESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhcC----CCchhHHHHHHHHHHccc
Confidence 3566789999999999999998753 666666555555555554
No 332
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=38.73 E-value=36 Score=18.21 Aligned_cols=25 Identities=24% Similarity=0.145 Sum_probs=18.7
Q ss_pred ccCcHHHHHHHHHHhhhccCCCcCH
Q 033770 26 RARLVELGLELFHSLLGEFEVVPIM 50 (112)
Q Consensus 26 ~~~~~~~a~~~~~~m~~~~g~~p~~ 50 (112)
..-+++.|...|..+.....++|+-
T Consensus 37 ~~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 37 NNWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred cCCCHHHHHHHHHHHHhcCCCChhh
Confidence 3567899999999998644566653
No 333
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=38.39 E-value=36 Score=20.13 Aligned_cols=49 Identities=20% Similarity=0.153 Sum_probs=33.9
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhH
Q 033770 19 AVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSE 68 (112)
Q Consensus 19 ~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 68 (112)
.+++...+.+..-.|.++++.+.. .|...+..|----|+.+.+.|-+.+
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~-~~~~is~~TVYR~L~~L~e~Gli~~ 60 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRK-KGPRISLATVYRTLDLLEEAGLIRK 60 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHH-TTTT--HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhh-ccCCcCHHHHHHHHHHHHHCCeEEE
Confidence 455555666666678899999986 6877787776666778888776654
No 334
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=38.35 E-value=1.1e+02 Score=21.93 Aligned_cols=21 Identities=33% Similarity=0.216 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcCChhHHHHHH
Q 033770 53 YGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 53 ~~~li~~~~~~g~~~~A~~~f 73 (112)
--.|++.|.+.|.+++|.++.
T Consensus 109 lP~Lm~~ci~~g~y~eALel~ 129 (338)
T PF04124_consen 109 LPQLMDTCIRNGNYSEALELS 129 (338)
T ss_pred hHHHHHHHHhcccHhhHHHHH
Confidence 345677777777777777775
No 335
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=38.24 E-value=1.3e+02 Score=20.59 Aligned_cols=62 Identities=13% Similarity=0.043 Sum_probs=44.8
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc---CHHHHH--HHHHHHHhcCChhHHHHHH
Q 033770 9 GLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP---IMEHYG--CVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 9 g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p---~~~~~~--~li~~~~~~g~~~~A~~~f 73 (112)
.+.++..=+|.||=-|.....+.+|-..|.. +.|+.| |..+.+ .-|....+.|++++|.+..
T Consensus 21 ~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~---e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~i 87 (228)
T KOG2659|consen 21 KVSVMREDLNRLVMNYLVHEGYVEAAEKFAK---ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKV 87 (228)
T ss_pred ccCcchhhHHHHHHHHHHhccHHHHHHHhcc---ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHH
Confidence 4566777777777777766666666666644 467666 555554 6788889999999999987
No 336
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.01 E-value=1.2e+02 Score=22.47 Aligned_cols=73 Identities=12% Similarity=0.059 Sum_probs=54.3
Q ss_pred CcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH------H---------------HHHHhhCChhHH
Q 033770 28 RLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL------W---------------SACKIHGAVKLS 86 (112)
Q Consensus 28 ~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f------~---------------~~~~~~g~~~~a 86 (112)
|...+|...++++.. ..+.|...++--=++|.-.|+.+.....| | =+....|-.++|
T Consensus 117 g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 455566666777764 56668888888888898889888877777 3 233456888999
Q ss_pred HHHHHHHHhcCCCCCc
Q 033770 87 HEVGKRLLELQPEHCR 102 (112)
Q Consensus 87 ~~~~~~m~~~~~~~~~ 102 (112)
++..++..+++|.+..
T Consensus 195 Ek~A~ralqiN~~D~W 210 (491)
T KOG2610|consen 195 EKQADRALQINRFDCW 210 (491)
T ss_pred HHHHHhhccCCCcchH
Confidence 9999988888887644
No 337
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=37.61 E-value=1.4e+02 Score=20.78 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHh
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGR 62 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~ 62 (112)
...+---++-++-+.++.+.|...+++..+.++-.|| .-|-.=|.+.+.
T Consensus 70 ~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~ 118 (254)
T COG4105 70 SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSY 118 (254)
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHH
Confidence 4555667788899999999999999999875666665 344444555543
No 338
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.78 E-value=2e+02 Score=23.53 Aligned_cols=81 Identities=14% Similarity=0.074 Sum_probs=59.7
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH--------H----HH
Q 033770 9 GLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL--------W----SA 76 (112)
Q Consensus 9 g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f--------~----~~ 76 (112)
|..-.-.|.+--|.-+...|....|.++-.+.+- ||---|=.=+.+++..+++++-+++- | ++
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kweeLekfAkskksPIGy~PFVe~ 753 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEELEKFAKSKKSPIGYLPFVEA 753 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHHHHHHHhccCCCCCchhHHHH
Confidence 4344555566666777788888888777655442 78888888888888888888877765 2 88
Q ss_pred HHhhCChhHHHHHHHHHH
Q 033770 77 CKIHGAVKLSHEVGKRLL 94 (112)
Q Consensus 77 ~~~~g~~~~a~~~~~~m~ 94 (112)
|.+.|+.++|.+.+..+.
T Consensus 754 c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 754 CLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred HHhcccHHHHhhhhhccC
Confidence 999999999887776554
No 339
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=36.49 E-value=58 Score=23.77 Aligned_cols=60 Identities=8% Similarity=0.084 Sum_probs=40.5
Q ss_pred CCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H-----HHHHhhCChhHHHHHHHHHHhcCCCCCcch
Q 033770 45 EVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W-----SACKIHGAVKLSHEVGKRLLELQPEHCRRY 104 (112)
Q Consensus 45 g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~-----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 104 (112)
.+.-|+..|.--+.---+.|.+.+..++| | .-+..+++++.+..+|..-.+++|..|..+
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw 179 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIW 179 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHH
Confidence 34446666665555555556666777776 6 334567888888888888888888777644
No 340
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.35 E-value=60 Score=27.15 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=26.7
Q ss_pred hHHHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhh
Q 033770 2 VDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLL 41 (112)
Q Consensus 2 ~~~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~ 41 (112)
|.++.+.-+.|...-.-.=|..+.+.+++++|..++..|.
T Consensus 985 ~~~L~~~~LSp~~~~~L~~la~~i~~~~y~~a~~i~~~ia 1024 (1049)
T KOG0307|consen 985 FDKLRDGTLSPPITDGLHQLAQSIKNRDYSEALQIHAQIA 1024 (1049)
T ss_pred HHHHhcCCcChHHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 4455444466777777666777777777777777777766
No 341
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=36.21 E-value=54 Score=21.00 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=16.0
Q ss_pred HHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHH
Q 033770 36 LFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEF 72 (112)
Q Consensus 36 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 72 (112)
++..+.+ .|+.|....++-++..|++.=..+.+.++
T Consensus 151 l~~~l~~-~~~~~~~~~~~w~~~lF~~~l~~~~~~~l 186 (214)
T PF00566_consen 151 LYNHLKQ-LGVDPEIYAFPWFLTLFSRSLPFDDVLRL 186 (214)
T ss_dssp HHHHHHH-TT-GGHHHHHHHHHTTTTTTS-HHHHHHH
T ss_pred hhhhhhh-hhhhhhhhhhhhhHhhcCCcCCHHHHHHH
Confidence 3333433 45555555555555555544444444444
No 342
>PF14044 NETI: NETI protein
Probab=36.06 E-value=26 Score=18.46 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=7.2
Q ss_pred hHHHhhcCCCC
Q 033770 2 VDEMYEKGLRA 12 (112)
Q Consensus 2 ~~~M~~~g~~p 12 (112)
+.+|++.|+.|
T Consensus 14 L~RM~~eGY~P 24 (57)
T PF14044_consen 14 LARMKKEGYMP 24 (57)
T ss_pred HHHHHHcCCCc
Confidence 45677777666
No 343
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=35.97 E-value=77 Score=24.11 Aligned_cols=48 Identities=10% Similarity=0.084 Sum_probs=35.5
Q ss_pred HhccCcHHHHHHHHHHhhhccCCCcCHH----HHHHHHHHHHhcCChhHHHHHH
Q 033770 24 CARARLVELGLELFHSLLGEFEVVPIME----HYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 24 ~~~~~~~~~a~~~~~~m~~~~g~~p~~~----~~~~li~~~~~~g~~~~A~~~f 73 (112)
.|+.|+.+.+..+|+...+ -|- -|.. +|+-|=.+|.-.+++++|+++-
T Consensus 27 Lck~gdcraGv~ff~aA~q-vGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH 78 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQ-VGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYH 78 (639)
T ss_pred HHhccchhhhHHHHHHHHH-hcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhh
Confidence 5789999999999999886 453 2444 3445555666678899999886
No 344
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=35.72 E-value=1.5e+02 Score=20.58 Aligned_cols=49 Identities=12% Similarity=0.019 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHH----------------H-HHHHhhCChhHHHHHHHHHHhcCCCC
Q 033770 52 HYGCVVDLLGRAGLLSEANEFL----------------W-SACKIHGAVKLSHEVGKRLLELQPEH 100 (112)
Q Consensus 52 ~~~~li~~~~~~g~~~~A~~~f----------------~-~~~~~~g~~~~a~~~~~~m~~~~~~~ 100 (112)
|-+..|+.+.+.+++++|.... + .-+|..|++++|..=++-.-++.|..
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 3456677888888999988887 2 88889999999997777766666653
No 345
>CHL00165 ftrB ferredoxin thioreductase subunit beta; Validated
Probab=35.36 E-value=64 Score=19.63 Aligned_cols=38 Identities=11% Similarity=0.008 Sum_probs=27.6
Q ss_pred CcHHHHHHHHHHhhhccC--CCcCHHHHHHHHHHHHhcCC
Q 033770 28 RLVELGLELFHSLLGEFE--VVPIMEHYGCVVDLLGRAGL 65 (112)
Q Consensus 28 ~~~~~a~~~~~~m~~~~g--~~p~~~~~~~li~~~~~~g~ 65 (112)
..++......+...+..| +.||...-..+|.++++..+
T Consensus 11 ~~~e~m~~f~ekya~~~G~~fnpD~~vt~~Vi~GLa~nK~ 50 (116)
T CHL00165 11 ESLEAMRKFAETYAKRTNTFFCSDLSITAVVIEGLARHKD 50 (116)
T ss_pred hhHHHHHHHHHHHHHHhCCeeCCCHHHHHHHHHHHHHHHH
Confidence 445556666666665455 77999999999999987644
No 346
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=35.20 E-value=1.9e+02 Score=21.59 Aligned_cols=77 Identities=18% Similarity=0.185 Sum_probs=52.0
Q ss_pred HhccCcHHHHHHHHHHhhhcc-----------CCCcCHHHHH--HHHHHHHhcCChhHHHHHH--------H--------
Q 033770 24 CARARLVELGLELFHSLLGEF-----------EVVPIMEHYG--CVVDLLGRAGLLSEANEFL--------W-------- 74 (112)
Q Consensus 24 ~~~~~~~~~a~~~~~~m~~~~-----------g~~p~~~~~~--~li~~~~~~g~~~~A~~~f--------~-------- 74 (112)
..+.|.++.|..=|....... ...+....|+ ..+..+.-.|+..-|.+.+ |
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~R 195 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQAR 195 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHH
Confidence 347889999999888877511 1122233343 3445566778888888887 6
Q ss_pred -HHHHhhCChhHHHHHHHHHHhcCCCC
Q 033770 75 -SACKIHGAVKLSHEVGKRLLELQPEH 100 (112)
Q Consensus 75 -~~~~~~g~~~~a~~~~~~m~~~~~~~ 100 (112)
.+|...|++..|..=.+...++..++
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs~Dn 222 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLSQDN 222 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhccccc
Confidence 78888899999987777666655443
No 347
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.68 E-value=1.7e+02 Score=20.74 Aligned_cols=99 Identities=18% Similarity=0.161 Sum_probs=46.2
Q ss_pred CCCCHHHHH-HHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHH-HHhcCChhHHHHHH-------------H
Q 033770 10 LRANEVTFV-AVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDL-LGRAGLLSEANEFL-------------W 74 (112)
Q Consensus 10 ~~p~~~t~~-~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~f-------------~ 74 (112)
..||..+.. -+.=+-...|+.+.|...+.++..++ |.+.--.-|=.+ +--.|++++|.+++ +
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f---p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~ 123 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF---PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIR 123 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC---CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHH
Confidence 555555433 23333344566666666666665322 322211111111 22336666666665 1
Q ss_pred ----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhccc
Q 033770 75 ----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNVH 111 (112)
Q Consensus 75 ----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~y 111 (112)
......|.-.+|.+-..+..+.-+.|+..+.-|+.+|
T Consensus 124 KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY 164 (289)
T KOG3060|consen 124 KRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIY 164 (289)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 2333345555555555555554455555555454444
No 348
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=34.19 E-value=2.7e+02 Score=23.00 Aligned_cols=59 Identities=15% Similarity=0.088 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHH------HHHhhh-ccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 15 VTFVAVLTACARARLVELGLEL------FHSLLG-EFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 15 ~t~~~li~~~~~~~~~~~a~~~------~~~m~~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
..|-.....|.+.|+.+.-.+. |+.+.. ..-++-|......|-+++.+.|..++|.+.+
T Consensus 810 ~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 810 MEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHH
Confidence 3455566667777765533322 222221 0123335666667778888888888888777
No 349
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=34.12 E-value=1.8e+02 Score=20.89 Aligned_cols=58 Identities=22% Similarity=0.150 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
|.+-|..==.+|++.|..+.|.+=-+...+ +-| ....|..|=.+|.-.|++.+|.+.|
T Consensus 114 nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~gk~~~A~~ay 172 (304)
T KOG0553|consen 114 NAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALGKYEEAIEAY 172 (304)
T ss_pred cchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 667777788899999999988776655543 333 4667888888999999999999997
No 350
>KOG3164 consensus Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=33.39 E-value=35 Score=23.23 Aligned_cols=66 Identities=15% Similarity=0.177 Sum_probs=44.2
Q ss_pred HHhhhccCCCcCHHHHHHHHHHHHhcCC-hhHHHHHH--H-HHHHhhCChhHHHHHHHHHHhcCCCCCcchh
Q 033770 38 HSLLGEFEVVPIMEHYGCVVDLLGRAGL-LSEANEFL--W-SACKIHGAVKLSHEVGKRLLELQPEHCRRYV 105 (112)
Q Consensus 38 ~~m~~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~f--~-~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 105 (112)
+++.+-.+..+-..|-.+.|.-+-..|. +..|..+- + ..=|.|++...+.+.+..|.+.+ +...|+
T Consensus 47 ~~i~r~l~~~vKL~tTqCvikele~~g~~l~ga~~iAK~fe~~~C~H~~~~s~seCl~svv~~~--Nk~~Yv 116 (236)
T KOG3164|consen 47 EQIKRYLQGEVKLMTTQCVIKELEELGKDLYGAKGIAKQFEIRNCNHKDARSPSECLRSVVRIS--NKHHYV 116 (236)
T ss_pred HHHHHHhcCCCeeeehHHHHHHHHHhCcchhhhHHHHHHHhHhcCCCCCCCCHHHHHHHHHhcc--CCceEE
Confidence 3334334455667778888888777766 77777776 3 33345689999999999998754 444444
No 351
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=33.16 E-value=85 Score=17.86 Aligned_cols=30 Identities=7% Similarity=0.077 Sum_probs=17.3
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 033770 10 LRANEVTFVAVLTACARARLVELGLELFHS 39 (112)
Q Consensus 10 ~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 39 (112)
+.|+...||.+|+...+.+.+.-|..++.+
T Consensus 12 F~pt~~~yn~yiN~~~~~nkVaPa~n~L~r 41 (83)
T PF10963_consen 12 FNPTPTAYNKYINEMAMDNKVAPAHNYLMR 41 (83)
T ss_pred eccCHHHHHHHHHHhccCCCchHHHHHHHH
Confidence 456666666666666666555555444433
No 352
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=33.05 E-value=1.7e+02 Score=24.28 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=20.7
Q ss_pred HHHHHHHHHhccC--cHHHHHHHHHHhhh
Q 033770 16 TFVAVLTACARAR--LVELGLELFHSLLG 42 (112)
Q Consensus 16 t~~~li~~~~~~~--~~~~a~~~~~~m~~ 42 (112)
-..++|.+|.+.+ ++++|+++..+++.
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~ 842 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELRE 842 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHh
Confidence 3456788888877 78888888888875
No 353
>PRK10292 hypothetical protein; Provisional
Probab=32.50 E-value=89 Score=16.95 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=11.0
Q ss_pred HHhhcCCCCCHHHHHHHHH
Q 033770 4 EMYEKGLRANEVTFVAVLT 22 (112)
Q Consensus 4 ~M~~~g~~p~~~t~~~li~ 22 (112)
+|...|-+|.......+|+
T Consensus 24 ~m~~lG~e~k~i~Ia~vlr 42 (69)
T PRK10292 24 EMRDLGQEPKHIVIAGVLR 42 (69)
T ss_pred HHHHcCCCcchhhHHHHHH
Confidence 3555566666666665553
No 354
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=32.21 E-value=45 Score=25.60 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhc
Q 033770 29 LVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRA 63 (112)
Q Consensus 29 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 63 (112)
+...+.++-.+-+- ..+.|.+.||.+|++.|+|.
T Consensus 540 nkr~gkQlASQ~il-q~lHPh~~twGSlLriYGr~ 573 (650)
T KOG4334|consen 540 NKRQGKQLASQRIL-QKLHPHLLTWGSLLRIYGRL 573 (650)
T ss_pred chhHHHHHHHHHHH-HHhCHHhhhHHHHHHHhhhh
Confidence 34556666655554 46889999999999999987
No 355
>cd08811 CARD_IPS1 Caspase activation and recruitment domain (CARD) found in IPS-1. Caspase activation and recruitment domain (CARD) found in IPS-1 (Interferon beta promoter stimulator protein 1), also known as CARDIF, VISA or MAVS. IPS-1 is an adaptor protein that plays an important role in interferon induction in response to viral infection. It is crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. The CARD of IPS-1 associates with the CARDs of two RNA helicases, RIG-I and MDA5, which bind viral DNA in the cytoplasm during the initial stage of intracellular antiviral response, leading to the induction of type I interferons. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homo
Probab=31.97 E-value=53 Score=18.75 Aligned_cols=40 Identities=25% Similarity=0.201 Sum_probs=27.9
Q ss_pred ccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHH
Q 033770 26 RARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANE 71 (112)
Q Consensus 26 ~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 71 (112)
..|....+..+++.+++..|. +..+|.|.-+++..+-|.+
T Consensus 44 ~~Gn~~a~~~L~d~LrrR~~W------~~~fi~ALr~~~~~~lAee 83 (84)
T cd08811 44 HSGNRATVQKLFDHLRRRPNW------VECLIRALRRCELGSLAEE 83 (84)
T ss_pred hhhHHHHHHHHHHHHhcCCCc------HHHHHHHHHHcCCcchhhc
Confidence 447778888888888753333 2458888888877776655
No 356
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=31.95 E-value=1e+02 Score=17.39 Aligned_cols=48 Identities=19% Similarity=0.063 Sum_probs=24.1
Q ss_pred hccCcHHHH----HHHHHHhhhccCCCcC--HHHHHH--HHHHHHhcCChhHHHHHH
Q 033770 25 ARARLVELG----LELFHSLLGEFEVVPI--MEHYGC--VVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 25 ~~~~~~~~a----~~~~~~m~~~~g~~p~--~~~~~~--li~~~~~~g~~~~A~~~f 73 (112)
.+.|++.+| .+.|+.... .+..++ ...+.. +-..+...|+.++|.+.+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~-~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l 64 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQ-SNNSSSNSGLAYALLNLAELHRRFGHYEEALQAL 64 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhh-cccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 355777666 566666554 233331 222221 233345556666666665
No 357
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=31.91 E-value=80 Score=21.66 Aligned_cols=37 Identities=5% Similarity=-0.137 Sum_probs=20.4
Q ss_pred cHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCCh
Q 033770 29 LVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLL 66 (112)
Q Consensus 29 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~ 66 (112)
.++...+.+.++.. .++.++.+..-..++-+-+.|++
T Consensus 226 m~~~v~~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 262 (267)
T cd06182 226 MAKDVEDALVKIIA-KAGGVDESDAEEYLKELEDEGRY 262 (267)
T ss_pred chHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHcCCe
Confidence 44555555555554 35555555566666666555554
No 358
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.87 E-value=2.1e+02 Score=20.99 Aligned_cols=83 Identities=19% Similarity=0.059 Sum_probs=58.7
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH--------------
Q 033770 9 GLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------- 73 (112)
Q Consensus 9 g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------- 73 (112)
|+..-.--|+++|--..+..++++|.+++..--+ -.| +.-..+.|=..|-+.-++..|-..+
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~E---r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYr 81 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELE---RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYR 81 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHh---cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Confidence 3333333466777777888899999998877553 124 6666777878888888888888776
Q ss_pred -H--HHHHhhCChhHHHHHHHHHH
Q 033770 74 -W--SACKIHGAVKLSHEVGKRLL 94 (112)
Q Consensus 74 -~--~~~~~~g~~~~a~~~~~~m~ 94 (112)
| .+.-+.+.+.+|.++...|.
T Consensus 82 lY~AQSLY~A~i~ADALrV~~~~~ 105 (459)
T KOG4340|consen 82 LYQAQSLYKACIYADALRVAFLLL 105 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhc
Confidence 2 55556778888888877765
No 359
>cd08320 Pyrin_NALPs Pyrin death domain found in NALP proteins. Pyrin Death Domain found in NALP (NACHT, LRR and PYD domains) proteins including NALP1 (CARD7, NLRP1), NALP3 (NLRP3, Cryopyrin, CIAS1), and NALP12 (NLRP12, Monarch-1), among others. Mammals contains at least 14 NALP proteins, named NALP1-14 (or NLRP1-14). NALPs are members of the NBS-LRR family of proteins possessing a tripartite domain structure including a C-terminal LRR (leucine-rich repeats), a central nucleotide-binding site (NBS) domain or NACHT (for neuronal apoptosis inhibitor protein, CIITA, HET-E and TP1), and an N-terminal protein-protein interaction domain, which is a Pyrin domain in the case of NALPs. The NBS-LRR family is also referred to as the NLR (Nod-like Receptor) or CATERPILLER (for CARD, transcription enhancer, R-(purine)-binding, pyrin, lots of LRRs) family. NALP1 contains an additional Caspase activation and recruitment domain (CARD) at the C-terminus. NALP1 and NALP3 are both involved in the assembly
Probab=31.25 E-value=51 Score=18.71 Aligned_cols=26 Identities=8% Similarity=0.093 Sum_probs=19.4
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhh
Q 033770 17 FVAVLTACARARLVELGLELFHSLLG 42 (112)
Q Consensus 17 ~~~li~~~~~~~~~~~a~~~~~~m~~ 42 (112)
-+-|+..|....-++-+..+|+.|-.
T Consensus 48 a~lLv~~y~~~~A~~~t~~if~~mn~ 73 (86)
T cd08320 48 AELLVEHYGGQQAWDVTLSIFEKMNL 73 (86)
T ss_pred HHHHHHHcChhHHHHHHHHHHHHHCh
Confidence 34566777777788888888888865
No 360
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=31.18 E-value=80 Score=19.78 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=17.5
Q ss_pred HhhCChhHHHHHHHHHHhcCCCCCc
Q 033770 78 KIHGAVKLSHEVGKRLLELQPEHCR 102 (112)
Q Consensus 78 ~~~g~~~~a~~~~~~m~~~~~~~~~ 102 (112)
...-+.+.|+.+++++++..|+...
T Consensus 87 iaKle~e~Ae~vY~el~~~~P~HLp 111 (139)
T PF12583_consen 87 IAKLEPENAEQVYEELLEAHPDHLP 111 (139)
T ss_dssp HTTS-HHHHHHHHHHHHHH-TT-TH
T ss_pred HHhhCHHHHHHHHHHHHHHCcchHH
Confidence 3444778999999999998888754
No 361
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=30.99 E-value=2.7e+02 Score=21.97 Aligned_cols=93 Identities=16% Similarity=0.109 Sum_probs=63.1
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHH-HHHHHHHHhcCChhHHH---HHH-------------
Q 033770 11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHY-GCVVDLLGRAGLLSEAN---EFL------------- 73 (112)
Q Consensus 11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~-~~li~~~~~~g~~~~A~---~~f------------- 73 (112)
+|....+.+.+. -..|+.+.|..+++.+.++ . |+.+-- --=+..--+.|..+.+. ++.
T Consensus 365 ~~~i~L~~a~f~--e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~ 439 (577)
T KOG1258|consen 365 TPIIHLLEARFE--ESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGIL 439 (577)
T ss_pred CcHHHHHHHHHH--HhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchh
Confidence 455555555554 3457999999999999864 3 544332 23455567788888887 444
Q ss_pred --------HHHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770 74 --------WSACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS 108 (112)
Q Consensus 74 --------~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~ 108 (112)
|-.+...++.+.|..++.++....|++-..+.-++
T Consensus 440 ~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~ 482 (577)
T KOG1258|consen 440 EKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELI 482 (577)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHH
Confidence 14445567999999999999987777665555443
No 362
>KOG2808 consensus U5 snRNP-associated RNA splicing factor [RNA processing and modification]
Probab=30.91 E-value=99 Score=22.34 Aligned_cols=48 Identities=15% Similarity=0.027 Sum_probs=26.7
Q ss_pred ChHHHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCH
Q 033770 1 MVDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIM 50 (112)
Q Consensus 1 l~~~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~ 50 (112)
||..|+..++.+|..-=-+.|.-++...++-.|...+-+|.- |-.|.+
T Consensus 230 Lf~~lr~~~Lp~DI~~sLa~Ic~~~~~reyl~AndaYlklAI--GNAPWP 277 (341)
T KOG2808|consen 230 LFRLLRRKNLPADIRQSLADICYLCQKREYLKANDAYLKLAI--GNAPWP 277 (341)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc--cCCCCc
Confidence 355566666666655544444445555666666666555542 555544
No 363
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=30.42 E-value=1.7e+02 Score=19.63 Aligned_cols=83 Identities=6% Similarity=-0.067 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhc-cCCCcCHHHHHHHHH-HHHhcCChhHHHH--HH---------------
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGE-FEVVPIMEHYGCVVD-LLGRAGLLSEANE--FL--------------- 73 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~-~g~~p~~~~~~~li~-~~~~~g~~~~A~~--~f--------------- 73 (112)
+.+-++...-...+.|++++|..-.+.+... ..++.-...|+.+.. +||..+.-+-++. ++
T Consensus 28 ei~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~EL~ 107 (204)
T COG2178 28 EIVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLPSPEELG 107 (204)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCCHHHcC
Confidence 3445555555566778888888777766531 112223455665665 6777766444433 33
Q ss_pred -----H---------------HHHHhhCChhHHHHHHHHHHh
Q 033770 74 -----W---------------SACKIHGAVKLSHEVGKRLLE 95 (112)
Q Consensus 74 -----~---------------~~~~~~g~~~~a~~~~~~m~~ 95 (112)
| ---.+.|+++.|.+.++-|.+
T Consensus 108 V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 108 VPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1 223467899999999998875
No 364
>PF02840 Prp18: Prp18 domain; InterPro: IPR004098 The splicing factor Prp18 is required for the second step of pre-mRNA splicing. PRP18 appears to be primarily associated with the U5 snRNP. The structure of a large fragment of the Saccharomyces cerevisiae Prp18 is known []. This fragment is fully active in yeast splicing in vitro and includes the sequences of Prp18 that have been evolutionarily conserved. The core structure consists of five alpha-helices that adopt a novel fold. The most highly conserved region of Prp18, a nearly invariant stretch of 19 aa, forms part of a loop between two alpha-helices and may interact with the U5 small nuclear ribonucleoprotein particles [].; GO: 0008380 RNA splicing, 0005681 spliceosomal complex; PDB: 1DVK_A.
Probab=30.27 E-value=99 Score=19.54 Aligned_cols=40 Identities=13% Similarity=-0.077 Sum_probs=24.6
Q ss_pred HHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 33 GLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 33 a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
-.-+|..+++ ..+.+|+..-=.-|--+++.+++.+|.+.+
T Consensus 43 l~PL~~~Lk~-~~l~~dil~~L~~Iv~~~q~r~y~~And~Y 82 (144)
T PF02840_consen 43 LKPLFKKLKK-RTLPEDILDSLATIVYHLQQREYVKANDAY 82 (144)
T ss_dssp HHHHHHHHHC-T-S-HHHHHHHHHHHHHHCCCGHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3456666665 566666665555555567777777777776
No 365
>PRK10941 hypothetical protein; Provisional
Probab=29.89 E-value=71 Score=22.26 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=25.8
Q ss_pred HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770 75 SACKIHGAVKLSHEVGKRLLELQPEHCR 102 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 102 (112)
.+|.+.+++++|.++.+.+..+.|+++.
T Consensus 189 ~~~~~~~~~~~AL~~~e~ll~l~P~dp~ 216 (269)
T PRK10941 189 AALMEEKQMELALRASEALLQFDPEDPY 216 (269)
T ss_pred HHHHHcCcHHHHHHHHHHHHHhCCCCHH
Confidence 8889999999999999999999998865
No 366
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.87 E-value=3.8e+02 Score=23.36 Aligned_cols=51 Identities=20% Similarity=0.268 Sum_probs=28.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 16 TFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
.|+.+-.|--+.|.+.+|..-+=+. -|+..|.-+|+...+.|.+++-.+++
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3455555555555555554433221 25566666667777777766666665
No 367
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=28.93 E-value=1.2e+02 Score=17.37 Aligned_cols=37 Identities=19% Similarity=-0.012 Sum_probs=27.4
Q ss_pred CcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhH
Q 033770 28 RLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSE 68 (112)
Q Consensus 28 ~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 68 (112)
.+.+....+|-...++ +|.++|=..|++++..++...
T Consensus 39 ~~~~~il~l~l~~L~d----~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 39 IDIPKILDLFLSQLKD----EDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred hhHHHHHHHHHHHcCC----CCchHHHHHHHHHHHHHHHCh
Confidence 4456667777766654 799999999999987776554
No 368
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=28.80 E-value=71 Score=14.65 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=15.0
Q ss_pred HHHhhhccCCCcCHHHHHHHHHHHHhc-CChhHHHHH
Q 033770 37 FHSLLGEFEVVPIMEHYGCVVDLLGRA-GLLSEANEF 72 (112)
Q Consensus 37 ~~~m~~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~ 72 (112)
.+++.. .|+.++ ....++-++ |+++.|.++
T Consensus 6 v~~L~~-mGf~~~-----~~~~AL~~~~~nve~A~~~ 36 (37)
T PF00627_consen 6 VQQLME-MGFSRE-----QAREALRACNGNVERAVDW 36 (37)
T ss_dssp HHHHHH-HTS-HH-----HHHHHHHHTTTSHHHHHHH
T ss_pred HHHHHH-cCCCHH-----HHHHHHHHcCCCHHHHHHh
Confidence 344443 466544 244444444 477777665
No 369
>COG4339 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.30 E-value=1.8e+02 Score=19.15 Aligned_cols=25 Identities=12% Similarity=0.185 Sum_probs=20.6
Q ss_pred hhcCCCCCHHHHHHHHHHHhccCcH
Q 033770 6 YEKGLRANEVTFVAVLTACARARLV 30 (112)
Q Consensus 6 ~~~g~~p~~~t~~~li~~~~~~~~~ 30 (112)
++.|..|..-.|+.||.+|+...+.
T Consensus 14 q~lg~~~~~~~f~~L~aaY~~~dRH 38 (208)
T COG4339 14 QNLGVDKTTQVFTHLIAAYSSPDRH 38 (208)
T ss_pred HHhcCCCchHHHHHHHHHhcCCccc
Confidence 4568888999999999999977653
No 370
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.10 E-value=2.4e+02 Score=20.63 Aligned_cols=27 Identities=11% Similarity=0.239 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 033770 15 VTFVAVLTACARARLVELGLELFHSLLG 42 (112)
Q Consensus 15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~ 42 (112)
..||..+..|. .|+.+.|+....++++
T Consensus 180 lAYniALaHy~-~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 180 LAYNLALAHYS-SRQYASALKHISEIIE 206 (459)
T ss_pred hHHHHHHHHHh-hhhHHHHHHHHHHHHH
Confidence 34544444333 2455555555554443
No 371
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=28.02 E-value=4.4 Score=23.05 Aligned_cols=23 Identities=17% Similarity=0.366 Sum_probs=10.9
Q ss_pred cCCCcCHHHHHHHHHHHHhcCCh
Q 033770 44 FEVVPIMEHYGCVVDLLGRAGLL 66 (112)
Q Consensus 44 ~g~~p~~~~~~~li~~~~~~g~~ 66 (112)
+.+.-+.-+|-+.|++|+|.|.+
T Consensus 18 YeLsk~~~vyRvFiNgYar~g~V 40 (88)
T PF11491_consen 18 YELSKNEAVYRVFINGYARNGFV 40 (88)
T ss_dssp HTTTTTTTB------TTSS--EE
T ss_pred HHhhcccceeeeeecccccceEE
Confidence 55566778899999999988873
No 372
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=27.82 E-value=3.1e+02 Score=21.70 Aligned_cols=58 Identities=16% Similarity=0.145 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
-+...|-.++..|.+. .-+.-..+++++.+ +.+. |++.-..|..-|-+ ++.+++..+|
T Consensus 97 e~kmal~el~q~y~en-~n~~l~~lWer~ve-~dfn-Dvv~~ReLa~~yEk-ik~sk~a~~f 154 (711)
T COG1747 97 ESKMALLELLQCYKEN-GNEQLYSLWERLVE-YDFN-DVVIGRELADKYEK-IKKSKAAEFF 154 (711)
T ss_pred chHHHHHHHHHHHHhc-CchhhHHHHHHHHH-hcch-hHHHHHHHHHHHHH-hchhhHHHHH
Confidence 4556666677777766 44556677777775 5553 55555666666666 7777777776
No 373
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=27.68 E-value=1.6e+02 Score=18.28 Aligned_cols=27 Identities=7% Similarity=0.009 Sum_probs=16.0
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhhccCC
Q 033770 19 AVLTACARARLVELGLELFHSLLGEFEV 46 (112)
Q Consensus 19 ~li~~~~~~~~~~~a~~~~~~m~~~~g~ 46 (112)
+++--+...|+++.|+.+.+...+ .|.
T Consensus 53 ~~mvW~~D~Gd~~~AL~~a~yAi~-~~l 79 (132)
T PF05944_consen 53 TVMVWLFDVGDFDGALDIAEYAIE-HGL 79 (132)
T ss_pred hhHhhhhcccCHHHHHHHHHHHHH-cCC
Confidence 333445566666666666666665 453
No 374
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=27.64 E-value=26 Score=17.81 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=16.1
Q ss_pred ccCcHHHHHHHHHHhhhccCCCcC
Q 033770 26 RARLVELGLELFHSLLGEFEVVPI 49 (112)
Q Consensus 26 ~~~~~~~a~~~~~~m~~~~g~~p~ 49 (112)
..-+++.|...|..+.....++|+
T Consensus 25 n~Wd~~~A~~~F~~l~~~~~IP~e 48 (51)
T PF03943_consen 25 NNWDYERALQNFEELKAQGKIPPE 48 (51)
T ss_dssp TTT-CCHHHHHHHHCCCTT-S-CC
T ss_pred cCCCHHHHHHHHHHHHHcCCCChH
Confidence 345688999999999864347665
No 375
>KOG2536 consensus MAM33, mitochondrial matrix glycoprotein [Energy production and conversion]
Probab=27.35 E-value=1.1e+02 Score=21.40 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=18.5
Q ss_pred hcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhh
Q 033770 7 EKGLRANEVTFVAVLTACARARLVELGLELFHSLL 41 (112)
Q Consensus 7 ~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~ 41 (112)
..|+.++...| |.+|...++..+=++.++.++
T Consensus 227 eRGI~esl~~F---L~~ym~~Kd~rEYl~WlksvK 258 (263)
T KOG2536|consen 227 ERGIKESLASF---LHAYMKNKDSREYLRWLKSVK 258 (263)
T ss_pred HcCCCHHHHHH---HHHHHhhhhHHHHHHHHHHHH
Confidence 44666655555 666666666655555555544
No 376
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=27.26 E-value=74 Score=14.36 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=14.1
Q ss_pred HHHhhhccCCCcCHHHHHHHHHH-HHhcCChhHHHHH
Q 033770 37 FHSLLGEFEVVPIMEHYGCVVDL-LGRAGLLSEANEF 72 (112)
Q Consensus 37 ~~~m~~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~ 72 (112)
.+++.. .|+.++. .+.+ ....|++++|.+.
T Consensus 5 v~~L~~-mGf~~~~-----a~~aL~~~~~d~~~A~~~ 35 (37)
T smart00165 5 IDQLLE-MGFSREE-----ALKALRAANGNVERAAEY 35 (37)
T ss_pred HHHHHH-cCCCHHH-----HHHHHHHhCCCHHHHHHH
Confidence 344553 5665441 2223 3334566666554
No 377
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=27.19 E-value=1.7e+02 Score=19.33 Aligned_cols=20 Identities=10% Similarity=0.125 Sum_probs=8.4
Q ss_pred hhHHHHHHHHHHhcCCCCCc
Q 033770 83 VKLSHEVGKRLLELQPEHCR 102 (112)
Q Consensus 83 ~~~a~~~~~~m~~~~~~~~~ 102 (112)
+++|...|++....+|.+..
T Consensus 96 F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HH
T ss_pred HHHHHHHHHHHHhcCCCcHH
Confidence 34444444444445555443
No 378
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=26.81 E-value=1.7e+02 Score=18.59 Aligned_cols=71 Identities=15% Similarity=0.025 Sum_probs=37.2
Q ss_pred HHHHHhcc---CcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHh-hCChhHHHHHHHH
Q 033770 20 VLTACARA---RLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFLWSACKI-HGAVKLSHEVGKR 92 (112)
Q Consensus 20 li~~~~~~---~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~g~~~~a~~~~~~ 92 (112)
+=.+..++ .++.++..+++...+ ..-+- +..----|--++.|.|+++++.++. ++|.. .++..+|.++=+.
T Consensus 38 lAwaLV~S~~~~dv~~GI~iLe~l~~-~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yv-d~ll~~e~~n~Qa~~Lk~~ 113 (149)
T KOG3364|consen 38 LAWALVRSRDTEDVQEGIVILEDLLK-SAHPERRRECLYYLAVGHYRLKEYSKSLRYV-DALLETEPNNRQALELKET 113 (149)
T ss_pred HHHHHHcccchHHHHHhHHHHHHHhh-hcCcccchhhhhhhHHHHHHHhhHHHHHHHH-HHHHhhCCCcHHHHHHHHH
Confidence 33444444 345677778877764 12211 2222223445777888888888775 33332 2355555554333
No 379
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=26.67 E-value=1.2e+02 Score=16.63 Aligned_cols=56 Identities=9% Similarity=0.049 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHH
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEF 72 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 72 (112)
.......+++.+.+ ++++++...+..+.. .|+.++ ...+.|.+...+. ++++..+.
T Consensus 4 ~~~~i~~i~~~~~~-~~~~~~~~~~~~l~~-~G~s~~-~Il~~l~~~l~~~-~~~~~~k~ 59 (89)
T PF08542_consen 4 PPEVIEEILESCLN-GDFKEARKKLYELLV-EGYSAS-DILKQLHEVLVES-DIPDSQKA 59 (89)
T ss_dssp -HHHHHHHHHHHHH-TCHHHHHHHHHHHHH-TT--HH-HHHHHHHHHHHTS-TSSHHHHH
T ss_pred CHHHHHHHHHHHHh-CCHHHHHHHHHHHHH-cCCCHH-HHHHHHHHHHHHh-hccHHHHH
Confidence 33444566666655 599999999999998 588765 4556677777776 54454444
No 380
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.65 E-value=1.2e+02 Score=17.46 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=19.6
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhh
Q 033770 19 AVLTACARARLVELGLELFHSLLG 42 (112)
Q Consensus 19 ~li~~~~~~~~~~~a~~~~~~m~~ 42 (112)
++++-..++.-.++|+++.+.|.+
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleK 59 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEK 59 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHH
Confidence 456667777888999999999986
No 381
>PF02758 PYRIN: PAAD/DAPIN/Pyrin domain; InterPro: IPR004020 Pyrin domain was identified as putative protein-protein interaction domain at the N-terminal region of several proteins thought to function in apoptotic and inflammatory signalling pathways. Using secondary structure prediction and potential-based fold recognition methods, the PYRIN domain is predicted to be a member of the six-helix bundle death domain-fold superfamily that includes death domains (DDs), death effector domains (DEDs), and caspase recruitment domains (CARDs). Members of the death domain-fold superfamily are well established mediators of protein-protein interactions found in many proteins involved in apoptosis and inflammation, indicating further that the PYRIN domains serve a similar function. Comparison of a circular dichroism spectrum of the PYRIN domain of CARD7/DEFCAP/NAC/NALP1 with spectra of several proteins known to adopt the death domain-fold provides experimental support for the structure prediction [] It is found in interferon-inducible proteins, pyrin and myeloid cell nuclear differentiation antigen.; PDB: 2DO9_A 2YU0_A 2KN6_A 1UCP_A 2L6A_A 2KM6_A 1PN5_A 2DBG_A 3QF2_B 2HM2_Q.
Probab=26.38 E-value=54 Score=18.26 Aligned_cols=23 Identities=13% Similarity=0.252 Sum_probs=12.0
Q ss_pred HHHHHHhccCcHHHHHHHHHHhh
Q 033770 19 AVLTACARARLVELGLELFHSLL 41 (112)
Q Consensus 19 ~li~~~~~~~~~~~a~~~~~~m~ 41 (112)
.|+..|...+-++-+..+|++|.
T Consensus 51 lLv~~y~~~~A~~vt~~il~~m~ 73 (83)
T PF02758_consen 51 LLVQHYGEQRAWEVTLKILEKMN 73 (83)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCHHHHHHHHHHHHHHcC
Confidence 34444444445555555555554
No 382
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=26.38 E-value=1.6e+02 Score=20.66 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=16.1
Q ss_pred HhhCChhHHHHHHHHHHhcCCCC
Q 033770 78 KIHGAVKLSHEVGKRLLELQPEH 100 (112)
Q Consensus 78 ~~~g~~~~a~~~~~~m~~~~~~~ 100 (112)
-+.|+++.|-+.+++..+++|++
T Consensus 40 ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 40 EKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccHHHHHHHHHHHHcCCccc
Confidence 36677777777777777766654
No 383
>PF03735 ENT: ENT domain; InterPro: IPR005491 This entry represents a protein regulator which is able to repress transcription, possibly via its interaction with a multi protein chromatin re-modeling complex that modifies the chromatin. Its interaction with BRCA2 suggests that it may play a central role in the DNA repair function of BRCA2 []. ; PDB: 1UZ3_B 1UTU_B 2FMM_E.
Probab=26.00 E-value=1.1e+02 Score=16.89 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhccCcH-HHHHHHHHHhhhccCC
Q 033770 15 VTFVAVLTACARARLV-ELGLELFHSLLGEFEV 46 (112)
Q Consensus 15 ~t~~~li~~~~~~~~~-~~a~~~~~~m~~~~g~ 46 (112)
..|.++|+|+.-.|++ .+-..++..++.+.+|
T Consensus 11 eAY~svl~Af~Aqg~lsweke~lLt~Lr~~L~I 43 (73)
T PF03735_consen 11 EAYSSVLRAFRAQGPLSWEKEKLLTELRKELNI 43 (73)
T ss_dssp HHHHHHHHHHHHHSS--HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC
Confidence 4567777777666643 3445556666543333
No 384
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=25.91 E-value=1.4e+02 Score=17.18 Aligned_cols=45 Identities=4% Similarity=-0.124 Sum_probs=28.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcC
Q 033770 17 FVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAG 64 (112)
Q Consensus 17 ~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g 64 (112)
...+|.-|...+++++|.+-+.++.. ....++ ....+|......+
T Consensus 5 i~~~l~ey~~~~D~~ea~~~l~~L~~-~~~~~~--vv~~~i~~~le~~ 49 (113)
T smart00544 5 IFLIIEEYLSSGDTDEAVHCLLELKL-PEQHHE--VVKVLLTCALEEK 49 (113)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCC-CcchHH--HHHHHHHHHHcCC
Confidence 34577788888999999999988874 233322 3334444444443
No 385
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=25.29 E-value=25 Score=20.00 Aligned_cols=16 Identities=25% Similarity=0.383 Sum_probs=7.6
Q ss_pred HHHhhcCCCCCHHHHH
Q 033770 3 DEMYEKGLRANEVTFV 18 (112)
Q Consensus 3 ~~M~~~g~~p~~~t~~ 18 (112)
++++..|+.||.+.+.
T Consensus 19 nELk~dG~ePDivL~G 34 (85)
T PF08967_consen 19 NELKEDGFEPDIVLVG 34 (85)
T ss_dssp HHHHHTT----EEEE-
T ss_pred HHHHhcCCCCCEEEEc
Confidence 5677788888876543
No 386
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=25.26 E-value=3.1e+02 Score=20.90 Aligned_cols=48 Identities=19% Similarity=0.048 Sum_probs=25.0
Q ss_pred ccCcHHHHHHHHHHhhh--ccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 26 RARLVELGLELFHSLLG--EFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 26 ~~~~~~~a~~~~~~m~~--~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
+.|.+.+|.+.+..-.. .....|+...|.-.-....+.|++++|..--
T Consensus 261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc 310 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDC 310 (486)
T ss_pred hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhh
Confidence 55666666666655432 0123334444444444456667766666554
No 387
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=25.21 E-value=1.1e+02 Score=26.27 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=13.5
Q ss_pred HHhcCChhHHHHHHHHHHHhhCChhHHHHHHH
Q 033770 60 LGRAGLLSEANEFLWSACKIHGAVKLSHEVGK 91 (112)
Q Consensus 60 ~~~~g~~~~A~~~f~~~~~~~g~~~~a~~~~~ 91 (112)
|.++|+.++|.+-+ ...|++.+|..+..
T Consensus 962 Ye~~GklekAl~a~----~~~~dWr~~l~~a~ 989 (1265)
T KOG1920|consen 962 YERCGKLEKALKAY----KECGDWREALSLAA 989 (1265)
T ss_pred HHHhccHHHHHHHH----HHhccHHHHHHHHH
Confidence 44555555555544 34444444444433
No 388
>PRK02287 hypothetical protein; Provisional
Probab=24.91 E-value=2.1e+02 Score=18.71 Aligned_cols=44 Identities=23% Similarity=0.255 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHH----H------------HHHHhhCChhHHHHHHHHHH
Q 033770 51 EHYGCVVDLLGRAGLLSEANEFL----W------------SACKIHGAVKLSHEVGKRLL 94 (112)
Q Consensus 51 ~~~~~li~~~~~~g~~~~A~~~f----~------------~~~~~~g~~~~a~~~~~~m~ 94 (112)
.+-.++..++.=+|..+.|.+++ | +.|++..+.++-.++-++..
T Consensus 108 s~vEAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN~elLe~Y~~~~~~~ev~~~q~~~~ 167 (171)
T PRK02287 108 SSVEALAAALYILGFKEEAEKILSKFKWGHTFLELNKEPLEAYARAKDSEEIVEIQKEYL 167 (171)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 34568888999999999999998 4 77777777666666655544
No 389
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=24.31 E-value=1.7e+02 Score=22.40 Aligned_cols=77 Identities=12% Similarity=0.106 Sum_probs=42.2
Q ss_pred HHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHH-HHHHhcCChhHHHHHH-------------H----HHHHhhCChh
Q 033770 23 ACARARLVELGLELFHSLLGEFEVVPIMEHYGCVV-DLLGRAGLLSEANEFL-------------W----SACKIHGAVK 84 (112)
Q Consensus 23 ~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li-~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~ 84 (112)
...+.+.++.|..+..+.+. +.||-..|-+.= .++.+.+++..|..=+ | .+|.+.+.+.
T Consensus 13 ~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence 34455566666666666553 334333332111 4555555554444333 2 5666666777
Q ss_pred HHHHHHHHHHhcCCCCCc
Q 033770 85 LSHEVGKRLLELQPEHCR 102 (112)
Q Consensus 85 ~a~~~~~~m~~~~~~~~~ 102 (112)
+|...|+....+.|+++.
T Consensus 90 ~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 90 KALLDLEKVKKLAPNDPD 107 (476)
T ss_pred HHHHHHHHhhhcCcCcHH
Confidence 777777777667776654
No 390
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=24.30 E-value=1.5e+02 Score=17.85 Aligned_cols=14 Identities=21% Similarity=0.038 Sum_probs=7.3
Q ss_pred HHhcCChhHHHHHH
Q 033770 60 LGRAGLLSEANEFL 73 (112)
Q Consensus 60 ~~~~g~~~~A~~~f 73 (112)
+.+.|+.-+|+++.
T Consensus 6 ~~~rGnhiKAL~ii 19 (111)
T PF04781_consen 6 YFARGNHIKALEII 19 (111)
T ss_pred HHHccCHHHHHHHH
Confidence 44455555555554
No 391
>PRK11906 transcriptional regulator; Provisional
Probab=24.18 E-value=3.3e+02 Score=20.81 Aligned_cols=75 Identities=9% Similarity=0.012 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH------------------H
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL------------------W 74 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f------------------~ 74 (112)
|...-..+=.+....++.+.|...|++...-.--.++...|..++..+ +|+.++|.+.+ |
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~--~G~~~~a~~~i~~alrLsP~~~~~~~~~~~ 414 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH--NEKIEEARICIDKSLQLEPRRRKAVVIKEC 414 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH--cCCHHHHHHHHHHHhccCchhhHHHHHHHH
Q ss_pred -HHHHhhCChhHHHHHH
Q 033770 75 -SACKIHGAVKLSHEVG 90 (112)
Q Consensus 75 -~~~~~~g~~~~a~~~~ 90 (112)
..|+-+ ..+.|.+++
T Consensus 415 ~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 415 VDMYVPN-PLKNNIKLY 430 (458)
T ss_pred HHHHcCC-chhhhHHHH
No 392
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=23.89 E-value=2.8e+02 Score=19.90 Aligned_cols=14 Identities=21% Similarity=-0.007 Sum_probs=6.4
Q ss_pred HHHHhccCcHHHHH
Q 033770 21 LTACARARLVELGL 34 (112)
Q Consensus 21 i~~~~~~~~~~~a~ 34 (112)
|.|.+.-+++.++.
T Consensus 90 IQALAEmnrWreVL 103 (309)
T PF07163_consen 90 IQALAEMNRWREVL 103 (309)
T ss_pred HHHHHHHhhHHHHH
Confidence 44444444444443
No 393
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=23.30 E-value=21 Score=26.23 Aligned_cols=57 Identities=12% Similarity=0.086 Sum_probs=38.9
Q ss_pred HhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhc
Q 033770 5 MYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRA 63 (112)
Q Consensus 5 M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 63 (112)
....+-+|+.++|.-+.+-+.+....-.-.--||+++. +-+.|+- -+..+|+.|+|.
T Consensus 11 ~~~~~~r~e~v~~~ev~~~~~~~~~~~~~~~~FEqvkt-~~~~P~e-Dle~~I~~haKV 67 (386)
T PF01696_consen 11 SLMSRRRPEQVTWQEVEAEFQEGDMFLLDKYSFEQVKT-YWMEPGE-DLEEAIRQHAKV 67 (386)
T ss_pred hhhccCCCCeEEHHHHHhhhhccccccccceeeEeEEE-EEcCCCc-CHHHHHHhcCEE
Confidence 34456789999999988888443333333455777774 7788875 677777777765
No 394
>PF03013 Pyr_excise: Pyrimidine dimer DNA glycosylase; InterPro: IPR004260 Pyrimidine dimer DNA glycosylases are enzymes responsible for initiating the base excision repair pathway, excising pyrimidine dimers by hydrolysis of the glycosylic bond of the 5' pyrimidine, followed by the intra-pyrimidine phosphodiester bond []. One such enzyme is T4 endonuclease V, an enzyme responsible for the first step of a pyrimidine-dimer-specific excision-repair pathway []. Bacteriophage T4 that are deficient in these enzymes are extremely sensitive to UV.; PDB: 2FCC_B 1ENJ_A 1ENI_A 1ENK_A 1VAS_A 2END_A.
Probab=23.30 E-value=36 Score=21.06 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=8.8
Q ss_pred ChHHHhhcCCCCCHHHHHHHH
Q 033770 1 MVDEMYEKGLRANEVTFVAVL 21 (112)
Q Consensus 1 l~~~M~~~g~~p~~~t~~~li 21 (112)
|.+||++.|++|+..-++.+.
T Consensus 68 l~~EM~~RGY~~~~~~~~~~~ 88 (130)
T PF03013_consen 68 LMAEMQRRGYKPNSPWFDDLD 88 (130)
T ss_dssp HHHHHHHTT---S--S----T
T ss_pred HHHHHHHcCCCCChhhhhccc
Confidence 357888888888887776444
No 395
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=23.26 E-value=3.1e+02 Score=20.42 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=25.9
Q ss_pred hHHHhhcCCCCCHHHH---HHHHHHHhccCcHHHHHHHHH
Q 033770 2 VDEMYEKGLRANEVTF---VAVLTACARARLVELGLELFH 38 (112)
Q Consensus 2 ~~~M~~~g~~p~~~t~---~~li~~~~~~~~~~~a~~~~~ 38 (112)
++.+.+.|+.|+.++= .+++.|..-.+..++-.+++.
T Consensus 102 ~kaL~e~gl~p~~i~GtS~Gaivaa~~a~~~~~e~~~~l~ 141 (391)
T cd07229 102 VKALWLRGLLPRIITGTATGALIAALVGVHTDEELLRFLD 141 (391)
T ss_pred HHHHHHcCCCCceEEEecHHHHHHHHHHcCCHHHHHHHHh
Confidence 5678889999988643 357777776666666666665
No 396
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=23.20 E-value=2.2e+02 Score=21.31 Aligned_cols=59 Identities=10% Similarity=-0.036 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhc-cC----CCc-CHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 15 VTFVAVLTACARARLVELGLELFHSLLGE-FE----VVP-IMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~-~g----~~p-~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
++...|++.++-.||+..|+++.+.+.-. .+ +.+ .+.++--+=-+|.-.+++.+|.+.|
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f 187 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTF 187 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHH
Confidence 45668999999999999999998887521 11 112 2333334444677889999999999
No 397
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=22.67 E-value=2e+02 Score=17.79 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHH----H------------HHHHhhCChhHHHHHHH
Q 033770 50 MEHYGCVVDLLGRAGLLSEANEFL----W------------SACKIHGAVKLSHEVGK 91 (112)
Q Consensus 50 ~~~~~~li~~~~~~g~~~~A~~~f----~------------~~~~~~g~~~~a~~~~~ 91 (112)
..+-.++..++.=+|..+.|.+++ | ..|++..+.++-.++-+
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~ 123 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQN 123 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 344468888888899999999988 4 66666655555544433
No 398
>PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting. The molecular function of this region is unknown. Proteins containing this domain also contain a C-terminal ring finger domain.
Probab=22.59 E-value=76 Score=19.95 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=11.9
Q ss_pred HHHHHhhCChhHHHHHHHH
Q 033770 74 WSACKIHGAVKLSHEVGKR 92 (112)
Q Consensus 74 ~~~~~~~g~~~~a~~~~~~ 92 (112)
|+.|...|+++.|.+..+.
T Consensus 110 Wk~yl~~~~fd~Al~~~~~ 128 (147)
T PF05131_consen 110 WKIYLDKGDFDEALQYCKT 128 (147)
T ss_pred HHHHHhcCcHHHHHHHccC
Confidence 5666666677766665543
No 399
>cd08305 Pyrin Pyrin: a protein-protein interaction domain. The Pyrin domain (or PYD), also called DAPIN or PAAD, is a subfamily of the Death Domain (DD) superfamily and it functions in several signaling pathways. The Pyrin domain is found at the N-terminus of a variety of proteins and serves as a linker that recruits other domains into signaling complexes. Pyrin-containing proteins include NALPs, ASC (Apoptosis-associated speck-like protein containing a CARD), and the interferon-inducible p200 (IFI-200) family of proteins which includes the human IFI-16, myeloid cell nuclear differentiation antigen (MNDA) and absent in melanoma (AIM) 2. NALPs are members of the NBS-LRR family of proteins possessing a tripartite domain structure including a C-terminal LRR (leucine-rich repeats), a central nucleotide-binding site (NBS) domain or NACHT (for neuronal apoptosis inhibitor protein, CIITA, HET-E and TP1), and an N-terminal protein-protein interaction domain, which is a Pyrin domain in the case
Probab=22.50 E-value=94 Score=16.99 Aligned_cols=23 Identities=4% Similarity=0.070 Sum_probs=13.7
Q ss_pred HHHHHhccCcHHHHHHHHHHhhh
Q 033770 20 VLTACARARLVELGLELFHSLLG 42 (112)
Q Consensus 20 li~~~~~~~~~~~a~~~~~~m~~ 42 (112)
|+..|....-++.+..+|+.|..
T Consensus 43 L~~~y~~~~a~~~t~~i~~~m~~ 65 (73)
T cd08305 43 MEQKFGAVSALDKLINIFEDMPL 65 (73)
T ss_pred HHHHcChhHHHHHHHHHHHHcCh
Confidence 44445555566667777766653
No 400
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=22.47 E-value=2.6e+02 Score=19.02 Aligned_cols=76 Identities=8% Similarity=-0.024 Sum_probs=37.1
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhccCCC-cCHHHHHHHHHHHHhcCChhHHHHHH------------------H-HHH
Q 033770 18 VAVLTACARARLVELGLELFHSLLGEFEVV-PIMEHYGCVVDLLGRAGLLSEANEFL------------------W-SAC 77 (112)
Q Consensus 18 ~~li~~~~~~~~~~~a~~~~~~m~~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~f------------------~-~~~ 77 (112)
-.|-.+....|+..+|...+++-.. |+- -|.-.--.+-.+...-+++-.|...+ + +.+
T Consensus 93 ~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l 170 (251)
T COG4700 93 YRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL 170 (251)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence 3444555555555555555555542 322 23333334444444445555554444 1 555
Q ss_pred HhhCChhHHHHHHHHHHh
Q 033770 78 KIHGAVKLSHEVGKRLLE 95 (112)
Q Consensus 78 ~~~g~~~~a~~~~~~m~~ 95 (112)
.-.|...+|+..|+....
T Consensus 171 aa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 171 AAQGKYADAESAFEVAIS 188 (251)
T ss_pred HhcCCchhHHHHHHHHHH
Confidence 555555555555555443
No 401
>PF08405 Calici_PP_N: Viral polyprotein N-terminal; InterPro: IPR013614 This domain is found at the N terminus of non-structural viral polyproteins of the Caliciviridae subfamily. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity, 0044419 interspecies interaction between organisms
Probab=21.90 E-value=3.2e+02 Score=19.87 Aligned_cols=56 Identities=16% Similarity=0.262 Sum_probs=37.1
Q ss_pred cCC---CcCHHHHH-HHHHHHHhcCChhHHHHHH------------H----------------HHHHhhCChhHHHHHHH
Q 033770 44 FEV---VPIMEHYG-CVVDLLGRAGLLSEANEFL------------W----------------SACKIHGAVKLSHEVGK 91 (112)
Q Consensus 44 ~g~---~p~~~~~~-~li~~~~~~g~~~~A~~~f------------~----------------~~~~~~g~~~~a~~~~~ 91 (112)
+|+ +||+.+|- .|+.-+--.|=.|-|.++. + +++...| .-+.++|+
T Consensus 192 fgIfWtPPDVssfiasl~~d~~~qGPedla~d~vP~~lGGiGm~~GfT~ekigr~l~sa~~~Lra~~~lG--~ygiei~~ 269 (358)
T PF08405_consen 192 FGIFWTPPDVSSFIASLLGDFQLQGPEDLAKDLVPVLLGGIGMALGFTSEKIGRMLSSAASGLRAATELG--QYGIEIFK 269 (358)
T ss_pred hcccCCCccHHHHHHHHcccccccCcchHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 565 57888874 5666677778788887776 1 5555555 56788888
Q ss_pred HHHh-cCCCCC
Q 033770 92 RLLE-LQPEHC 101 (112)
Q Consensus 92 ~m~~-~~~~~~ 101 (112)
.+.+ .-|.+.
T Consensus 270 ~i~kw~fp~~~ 280 (358)
T PF08405_consen 270 LIMKWFFPKKD 280 (358)
T ss_pred HHHHHcCCCCc
Confidence 8876 334433
No 402
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=21.79 E-value=1.5e+02 Score=22.72 Aligned_cols=41 Identities=7% Similarity=0.105 Sum_probs=34.3
Q ss_pred hHHHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 033770 2 VDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLG 42 (112)
Q Consensus 2 ~~~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 42 (112)
|....+..+.||.+.+-=+-..|+++--+|-|.++++---+
T Consensus 462 ~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~r 502 (586)
T KOG2223|consen 462 FTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCR 502 (586)
T ss_pred HHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeee
Confidence 45566788999999999999999999988888888876654
No 403
>COG2042 Uncharacterized conserved protein [Function unknown]
Probab=21.61 E-value=2.5e+02 Score=18.43 Aligned_cols=30 Identities=20% Similarity=0.189 Sum_probs=23.6
Q ss_pred cCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 44 FEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 44 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
+|-.--..+-.+++.++.=.|..++|.++.
T Consensus 109 YGkp~kLss~EAlaAaLYI~G~~deA~~ll 138 (179)
T COG2042 109 YGKPFKLSSAEALAAALYIVGFKDEASELL 138 (179)
T ss_pred cCCcchhchHHHHHHHHHHhCcHHHHHHHH
Confidence 333334556678999999999999999998
No 404
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=21.57 E-value=3.1e+02 Score=19.59 Aligned_cols=73 Identities=16% Similarity=0.124 Sum_probs=43.5
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhhCChhHHHHHHHHHHh
Q 033770 18 VAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFLWSACKIHGAVKLSHEVGKRLLE 95 (112)
Q Consensus 18 ~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~g~~~~a~~~~~~m~~ 95 (112)
..++++..+ .|.+...++.+.+. .|+.-|....+.--..|- |.++++.+.+++.|.+.++..++.+-..+|+.
T Consensus 242 ~y~l~~l~~-~d~e~~~~l~~~l~--~~v~~d~~~~~~fW~~y~--~~i~~~~~~~yd~yLKaN~q~~G~~SY~~vV~ 314 (318)
T PF12725_consen 242 RYCLNALYR-KDPEAYKELYSQLS--PGVKKDLKENRAFWQKYE--GPIEEVSDFVYDTYLKANNQEDGIKSYSRVVD 314 (318)
T ss_pred HHHHHHHHh-cCHHHHHHHHHhCC--HHHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHhcCchHHHhCHHHHHH
Confidence 344444445 56666666665554 255555554444444332 35555555555778888888888888877764
No 405
>PRK08006 replicative DNA helicase; Provisional
Probab=21.50 E-value=2.5e+02 Score=21.27 Aligned_cols=60 Identities=12% Similarity=0.105 Sum_probs=33.2
Q ss_pred HHhhcCCCCCHHHHHHHHHHHhccCcHHHH--HHHHHHhhhccCCCcCHHHHHHHHHHHHhcCCh
Q 033770 4 EMYEKGLRANEVTFVAVLTACARARLVELG--LELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLL 66 (112)
Q Consensus 4 ~M~~~g~~p~~~t~~~li~~~~~~~~~~~a--~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~ 66 (112)
+|...|.++|.+|...-|.. .|.+++. ...+..+........++..|.-+|.-.....++
T Consensus 74 ~L~~~g~~iD~vtv~~~L~~---~~~l~~vGG~~yL~~L~~~~~s~ani~~Ya~iV~e~~~~R~l 135 (471)
T PRK08006 74 RLQESGSPIDLITLAESLER---QGQLDSVGGFAYLAELSKNTPSAANISAYADIVRERAVVREM 135 (471)
T ss_pred HHHHCCCCCCHHHHHHHHHh---cCchhhcCCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34557888899888776654 3333321 233333332234445777787777665544443
No 406
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=21.32 E-value=1.5e+02 Score=22.92 Aligned_cols=54 Identities=22% Similarity=0.183 Sum_probs=22.6
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHHH
Q 033770 18 VAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFLW 74 (112)
Q Consensus 18 ~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~ 74 (112)
.-++.-|.+.|..+.|.++...+.. .-+ ...-|..-+..+.|+|+.....++-|
T Consensus 409 ~k~l~iC~~~~L~~~a~~I~~~~~~-~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~ 462 (566)
T PF07575_consen 409 EKLLEICAELGLEDVAREICKILGQ-RLL--KEGRYGEALSWFIRAGDYSLVTRIAD 462 (566)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHH-HHH--HHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH-HHH--HCCCHHHHHHHHHHCCCHHHHHHHHH
Confidence 4456666666666666666665553 111 23445566666666666666655553
No 407
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.27 E-value=3.1e+02 Score=19.45 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHH
Q 033770 50 MEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 50 ~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
+.-|+--+.+|.++|.++.|-..+
T Consensus 91 vdl~eKAs~lY~E~GspdtAAmal 114 (308)
T KOG1585|consen 91 VDLYEKASELYVECGSPDTAAMAL 114 (308)
T ss_pred HHHHHHHHHHHHHhCCcchHHHHH
Confidence 445566777788888877666554
No 408
>PLN03025 replication factor C subunit; Provisional
Probab=21.13 E-value=3e+02 Score=19.29 Aligned_cols=56 Identities=7% Similarity=0.025 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHH
Q 033770 12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANE 71 (112)
Q Consensus 12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 71 (112)
|.......++++... +++++|...+..+.. .|..|...... | ..+...-++++..+
T Consensus 223 ~~~~~i~~~i~~~~~-~~~~~a~~~l~~ll~-~g~~~~~Il~~-l-~~~~~~~~~~~~~~ 278 (319)
T PLN03025 223 PHPLHVKNIVRNCLK-GKFDDACDGLKQLYD-LGYSPTDIITT-L-FRVVKNYDMPEFLK 278 (319)
T ss_pred CCHHHHHHHHHHHHc-CCHHHHHHHHHHHHH-cCCCHHHHHHH-H-HHHHHhcCCCHHHH
Confidence 333445556666654 789999999999996 79988644433 3 33443334444444
No 409
>PF04269 DUF440: Protein of unknown function, DUF440; InterPro: IPR007376 This entry represents hypothetical proteins such as HI1450, which is believed to act as a putative dsDNA mimic. HI1450 is an acidic protein with a core structure consisting of alpha(2)-beta(4), where the alpha-helices are packed against the side of an anti-parallel 4-stranded beta meander. As such, it has some similarity to the dsDNA mimics uracil-DNA glycosylase inhibitor and nuclease A inhibitor (NuiA), including the distribution of surface charges and the position of the hydrophobic cavity []. DNA mimics act to inhibit or regulate dsDNA-binding proteins. ; PDB: 1NNV_A.
Probab=21.10 E-value=1.2e+02 Score=17.99 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=17.6
Q ss_pred cHHHHHHHHHHhhhccCCCc-CHHHHHH
Q 033770 29 LVELGLELFHSLLGEFEVVP-IMEHYGC 55 (112)
Q Consensus 29 ~~~~a~~~~~~m~~~~g~~p-~~~~~~~ 55 (112)
-++.|..+|-+|.. -.+.| |+..||.
T Consensus 9 ~id~AYDiFLE~A~-dNL~paDi~lF~~ 35 (103)
T PF04269_consen 9 AIDQAYDIFLELAP-DNLDPADILLFNL 35 (103)
T ss_dssp HHHHHHHHHHHH-S-TTS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-hcCCHHHHHHHHH
Confidence 36789999999997 57777 6666653
No 410
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=21.07 E-value=1.4e+02 Score=23.56 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHh
Q 033770 11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGR 62 (112)
Q Consensus 11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~ 62 (112)
--|...||++|+ |-.+....++..|.+ .|+..| +++++|+.-.-+
T Consensus 617 fKN~iIYNaVIS-----gIheqmK~lmkl~PR-~~iL~D-iHF~aLL~K~kK 661 (782)
T PF07218_consen 617 FKNMIIYNAVIS-----GIHEQMKNLMKLMPR-KPILKD-IHFEALLNKEKK 661 (782)
T ss_pred hhhhHhHHHHHH-----HHHHHHHHHHHhCCC-cchhHH-HHHHHHhhhccc
Confidence 346777888776 445677788888887 677544 678888776654
No 411
>PF02943 FeThRed_B: Ferredoxin thioredoxin reductase catalytic beta chain; InterPro: IPR004209 Ferredoxin thioredoxin reductase is a [4FE-4S] protein present in organisms performing oxygenic photosynthesis, and plays an important role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin), regulating enzymes by reduction of specific disulphide groups. It catalyses the light-dependent activation of several photosynthetis enzymes. Ferredoxin thioredoxin reductase is a heterodimer of subunit alpha and subunit beta. Subunit alpha is the variable subunit, and beta is the catalytic chain []. The structure of the beta subunit has been determined and found to fold around the FeS cluster [].; GO: 0008937 ferredoxin-NAD(P) reductase activity, 0055114 oxidation-reduction process; PDB: 2PUK_E 2PVD_A 2PVG_A 2PUO_A 2PU9_A 1DJ7_A 2PVO_A.
Probab=20.75 E-value=2e+02 Score=17.16 Aligned_cols=34 Identities=18% Similarity=0.087 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhhccC--CCcCHHHHHHHHHHHHhcC
Q 033770 31 ELGLELFHSLLGEFE--VVPIMEHYGCVVDLLGRAG 64 (112)
Q Consensus 31 ~~a~~~~~~m~~~~g--~~p~~~~~~~li~~~~~~g 64 (112)
++..+..+.-.+..| +.||...-..++.++++..
T Consensus 4 e~~~~~~~~~a~~~G~~~NpD~~~~~~v~~GL~~nk 39 (108)
T PF02943_consen 4 EKMYKFLEKYAEKSGYKLNPDEEVTDDVLEGLARNK 39 (108)
T ss_dssp HHHHHHHHHHHHHTT-B-BSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCEECCCHHHHHHHHHHHHHHH
Confidence 344444444443345 7799999999999997763
No 412
>PHA01782 hypothetical protein
Probab=20.41 E-value=2.5e+02 Score=18.27 Aligned_cols=52 Identities=13% Similarity=0.168 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHH---HHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChh
Q 033770 9 GLRANEVTFVAV---LTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLS 67 (112)
Q Consensus 9 g~~p~~~t~~~l---i~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 67 (112)
|-..|..+-.+- ++.--..|++.-+..+|+.|.+ |-+- |+|.+.+.+.|.+.
T Consensus 29 gk~LDe~iQ~tglsil~HvdeHGDVt~a~kL~~aMPK--GsRr-----nAL~~wlv~~Gkv~ 83 (177)
T PHA01782 29 GKELDEAIQLTGLSILNHVDEHGDVTVAKKLYEAMPK--GSRR-----NALAEWLVKFGKVQ 83 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccc--cchh-----hHHHHHHHHhCCcc
Confidence 334444444433 3333467999999999999984 6553 56888888888653
No 413
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=20.34 E-value=56 Score=16.18 Aligned_cols=19 Identities=21% Similarity=0.050 Sum_probs=13.2
Q ss_pred HHHHHHhhhccCCCcCHHHH
Q 033770 34 LELFHSLLGEFEVVPIMEHY 53 (112)
Q Consensus 34 ~~~~~~m~~~~g~~p~~~~~ 53 (112)
.++.+++.+ +|+.|-++|-
T Consensus 9 ~eL~~~L~~-~G~~~gPIt~ 27 (44)
T smart00540 9 AELRAELKQ-YGLPPGPITD 27 (44)
T ss_pred HHHHHHHHH-cCCCCCCcCc
Confidence 356777776 8888766654
No 414
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=20.32 E-value=1.2e+02 Score=14.10 Aligned_cols=22 Identities=14% Similarity=-0.029 Sum_probs=10.9
Q ss_pred HHhhCChhHHHHHHH--HHHhcCC
Q 033770 77 CKIHGAVKLSHEVGK--RLLELQP 98 (112)
Q Consensus 77 ~~~~g~~~~a~~~~~--~m~~~~~ 98 (112)
+-..|+.++|..+|+ -...+++
T Consensus 11 ~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 11 FYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHHHhcc
Confidence 345566666666633 4443333
No 415
>KOG2636 consensus Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=20.29 E-value=1.9e+02 Score=22.00 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=22.5
Q ss_pred HhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhc
Q 033770 5 MYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGE 43 (112)
Q Consensus 5 M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 43 (112)
|+..|++|+.+ +.....+++|.+++.+|+.+
T Consensus 431 mrCLGIpnt~~--------F~~IT~I~eA~~LW~k~k~q 461 (497)
T KOG2636|consen 431 MRCLGIPNTSV--------FKGITKIEEALELWKKMKEQ 461 (497)
T ss_pred ceecCCCCcHH--------hcccccHHHHHHHHHHHHHh
Confidence 56677666543 35667889999999999853
No 416
>cd08321 Pyrin_ASC-like Pyrin Death Domain found in ASC. Pyrin Death Domain found in ASC (Apoptosis-associated speck-like protein containing a CARD) and similar proteins. ASC is an adaptor molecule that functions in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. ASC contains two domains from the Death Domain (DD) superfamily, an N-terminal pyrin-like domain and a C-terminal Caspase activation and recruitment domain (CARD). Through these 2 domains, ASC serves as an adaptor for inflammasome integrity and oligomerizes to form supramolecular assemblies. Other members of this subfamily are associated with ATPase domains and their function remains unknown. In general, Pyrin is a subfamily of the DD superfamily and functions in several signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=20.14 E-value=1.2e+02 Score=17.03 Aligned_cols=25 Identities=8% Similarity=0.138 Sum_probs=17.4
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhh
Q 033770 18 VAVLTACARARLVELGLELFHSLLG 42 (112)
Q Consensus 18 ~~li~~~~~~~~~~~a~~~~~~m~~ 42 (112)
.-|++.|....-++-+.++|+.|.+
T Consensus 49 ~lLv~~y~~~~A~~vt~~il~~in~ 73 (82)
T cd08321 49 DKMVQFYGEEYAVEVTVKILRKMNQ 73 (82)
T ss_pred HHHHHHcChhHHHHHHHHHHHHhcc
Confidence 3456666666777888888887764
Done!