Query 033770
Match_columns 112
No_of_seqs 122 out of 1537
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 09:53:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033770.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033770hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 99.9 3E-25 1E-29 161.4 10.4 109 1-110 92-219 (501)
2 4g26_A Pentatricopeptide repea 99.9 8.6E-25 2.9E-29 159.0 10.5 110 1-111 48-185 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.7 7.7E-18 2.6E-22 129.6 9.8 71 2-73 150-224 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.7 3.8E-18 1.3E-22 131.3 7.9 86 12-97 125-231 (1134)
5 2xpi_A Anaphase-promoting comp 99.4 1.3E-11 4.3E-16 89.4 11.9 109 2-112 464-595 (597)
6 2xpi_A Anaphase-promoting comp 99.2 1.5E-10 5E-15 83.8 9.5 94 13-108 372-482 (597)
7 1w3b_A UDP-N-acetylglucosamine 98.8 1.2E-07 4.2E-12 65.3 10.8 93 13-107 270-379 (388)
8 1na0_A Designed protein CTPR3; 98.7 3.2E-07 1.1E-11 52.7 9.4 93 14-108 9-118 (125)
9 2fo7_A Synthetic consensus TPR 98.6 3.8E-07 1.3E-11 52.9 8.8 85 13-99 34-135 (136)
10 2fo7_A Synthetic consensus TPR 98.6 1.1E-06 3.8E-11 50.8 10.8 92 16-109 3-111 (136)
11 1w3b_A UDP-N-acetylglucosamine 98.6 4.8E-07 1.6E-11 62.3 10.1 98 11-110 233-348 (388)
12 3mkr_A Coatomer subunit epsilo 98.6 4.7E-07 1.6E-11 61.2 9.4 27 76-102 209-235 (291)
13 2lni_A Stress-induced-phosphop 98.5 1.4E-06 4.9E-11 50.7 9.2 98 10-109 12-126 (133)
14 3as5_A MAMA; tetratricopeptide 98.5 1.7E-06 5.8E-11 52.8 9.7 92 13-106 41-149 (186)
15 2ho1_A Type 4 fimbrial biogene 98.5 2E-06 6.9E-11 55.6 10.4 89 13-102 104-210 (252)
16 2q7f_A YRRB protein; TPR, prot 98.5 3.5E-06 1.2E-10 53.9 11.1 87 13-101 56-159 (243)
17 2y4t_A DNAJ homolog subfamily 98.5 7.9E-07 2.7E-11 62.0 8.5 89 11-101 23-128 (450)
18 4gco_A Protein STI-1; structur 98.5 1.7E-06 5.7E-11 51.6 8.7 92 15-108 14-122 (126)
19 2vq2_A PILW, putative fimbrial 98.5 3.1E-06 1.1E-10 53.4 10.4 93 13-106 75-187 (225)
20 2vyi_A SGTA protein; chaperone 98.5 2.2E-06 7.4E-11 49.5 8.9 95 12-108 10-121 (131)
21 2y4t_A DNAJ homolog subfamily 98.4 3.5E-06 1.2E-10 58.8 11.2 85 21-108 264-370 (450)
22 3vtx_A MAMA; tetratricopeptide 98.4 2.8E-06 9.5E-11 52.7 9.6 94 13-109 4-149 (184)
23 1elw_A TPR1-domain of HOP; HOP 98.4 3.6E-06 1.2E-10 47.8 9.4 94 13-108 3-113 (118)
24 2q7f_A YRRB protein; TPR, prot 98.4 3.3E-06 1.1E-10 54.0 10.0 89 14-104 125-230 (243)
25 3as5_A MAMA; tetratricopeptide 98.4 4.6E-06 1.6E-10 50.9 10.2 95 11-107 73-184 (186)
26 2ho1_A Type 4 fimbrial biogene 98.4 5.4E-06 1.8E-10 53.6 10.9 96 10-107 136-249 (252)
27 2pl2_A Hypothetical conserved 98.4 2.7E-06 9.2E-11 54.8 9.0 97 11-110 2-127 (217)
28 4eqf_A PEX5-related protein; a 98.4 1.4E-06 4.8E-11 59.4 7.9 85 13-99 212-313 (365)
29 2vq2_A PILW, putative fimbrial 98.4 5.7E-06 1.9E-10 52.1 10.0 94 13-108 41-154 (225)
30 2dba_A Smooth muscle cell asso 98.4 1.3E-05 4.4E-10 47.4 11.1 94 12-108 26-140 (148)
31 3mkr_A Coatomer subunit epsilo 98.4 3.1E-06 1.1E-10 57.1 9.2 74 27-102 179-270 (291)
32 1fch_A Peroxisomal targeting s 98.3 3.7E-06 1.3E-10 57.1 8.6 86 13-100 216-318 (368)
33 3sz7_A HSC70 cochaperone (SGT) 98.3 1.1E-05 3.7E-10 49.5 9.7 91 12-104 9-116 (164)
34 2vgx_A Chaperone SYCD; alterna 98.3 1.3E-05 4.4E-10 48.8 9.7 93 10-104 16-126 (148)
35 4i17_A Hypothetical protein; T 98.3 1.7E-05 5.8E-10 50.8 10.5 90 13-103 6-112 (228)
36 1xnf_A Lipoprotein NLPI; TPR, 98.3 1.2E-05 4E-10 52.4 9.9 87 13-101 42-145 (275)
37 3cv0_A Peroxisome targeting si 98.3 6E-06 2.1E-10 54.8 8.6 87 11-99 169-272 (327)
38 2xcb_A PCRH, regulatory protei 98.3 1.2E-05 4.1E-10 48.3 9.1 91 14-106 18-125 (142)
39 3gyz_A Chaperone protein IPGC; 98.3 1.3E-05 4.5E-10 49.4 9.3 90 9-101 30-138 (151)
40 3hym_B Cell division cycle pro 98.3 1.8E-05 6.3E-10 52.6 10.7 95 13-107 192-310 (330)
41 3uq3_A Heat shock protein STI1 98.2 1E-05 3.4E-10 52.0 9.0 93 14-107 79-213 (258)
42 4eqf_A PEX5-related protein; a 98.2 7.5E-06 2.6E-10 55.8 8.6 99 13-111 176-291 (365)
43 2kck_A TPR repeat; tetratricop 98.2 2.3E-05 8E-10 43.9 9.4 87 13-101 5-111 (112)
44 4ga2_A E3 SUMO-protein ligase 98.2 9.7E-06 3.3E-10 49.4 8.1 94 14-110 31-143 (150)
45 3hym_B Cell division cycle pro 98.2 2E-05 7E-10 52.3 9.9 93 13-107 89-199 (330)
46 3upv_A Heat shock protein STI1 98.2 1.5E-05 5.1E-10 46.6 7.9 90 14-105 4-116 (126)
47 4i17_A Hypothetical protein; T 98.2 2.3E-05 7.9E-10 50.2 9.3 95 12-109 40-161 (228)
48 1fch_A Peroxisomal targeting s 98.2 1.1E-05 3.9E-10 54.6 8.2 90 21-110 188-294 (368)
49 3uq3_A Heat shock protein STI1 98.2 1.5E-05 5.3E-10 51.1 8.4 94 13-108 138-254 (258)
50 3q49_B STIP1 homology and U bo 98.1 3.3E-05 1.1E-09 45.3 9.2 87 11-99 6-109 (137)
51 3fp2_A TPR repeat-containing p 98.1 2E-05 6.9E-10 56.0 9.4 95 11-107 273-384 (537)
52 3urz_A Uncharacterized protein 98.1 2.2E-05 7.4E-10 50.2 8.5 87 21-110 11-131 (208)
53 1a17_A Serine/threonine protei 98.1 6.8E-05 2.3E-09 45.1 10.2 88 15-104 14-118 (166)
54 2e2e_A Formate-dependent nitri 98.1 7.6E-05 2.6E-09 45.9 10.4 94 12-107 42-155 (177)
55 2pl2_A Hypothetical conserved 98.1 3.6E-05 1.2E-09 49.4 9.1 95 13-110 72-194 (217)
56 2gw1_A Mitochondrial precursor 98.1 5.8E-05 2E-09 53.1 10.7 85 15-102 7-108 (514)
57 4gyw_A UDP-N-acetylglucosamine 98.1 2.7E-05 9.4E-10 59.0 9.4 92 14-108 43-152 (723)
58 4gyw_A UDP-N-acetylglucosamine 98.1 3.4E-05 1.2E-09 58.5 9.9 95 13-110 8-120 (723)
59 3u4t_A TPR repeat-containing p 98.1 2.2E-05 7.6E-10 51.1 7.9 89 16-105 39-146 (272)
60 4ga2_A E3 SUMO-protein ligase 98.0 5.1E-06 1.8E-10 50.7 4.4 85 24-111 7-109 (150)
61 1p5q_A FKBP52, FK506-binding p 98.0 5.3E-05 1.8E-09 52.0 9.6 95 13-110 146-273 (336)
62 3u4t_A TPR repeat-containing p 98.0 4.9E-05 1.7E-09 49.4 9.1 94 16-111 5-118 (272)
63 1elr_A TPR2A-domain of HOP; HO 98.0 9.1E-05 3.1E-09 42.5 9.3 84 14-99 4-111 (131)
64 2gw1_A Mitochondrial precursor 98.0 4.2E-05 1.4E-09 53.9 9.1 94 13-109 236-346 (514)
65 3vtx_A MAMA; tetratricopeptide 98.0 4.5E-05 1.5E-09 47.1 8.2 88 13-102 72-176 (184)
66 1xnf_A Lipoprotein NLPI; TPR, 98.0 0.00012 4.2E-09 47.4 10.5 92 11-104 74-181 (275)
67 1hh8_A P67PHOX, NCF-2, neutrop 98.0 9.3E-05 3.2E-09 46.6 9.7 81 16-101 8-105 (213)
68 3ieg_A DNAJ homolog subfamily 98.0 8.1E-05 2.8E-09 49.8 9.8 92 13-107 70-194 (359)
69 2ond_A Cleavage stimulation fa 98.0 5.9E-05 2E-09 50.8 8.6 93 10-105 94-207 (308)
70 1b89_A Protein (clathrin heavy 97.9 1.4E-06 4.7E-11 62.7 -0.0 79 12-93 59-174 (449)
71 2fbn_A 70 kDa peptidylprolyl i 97.9 0.00019 6.6E-09 45.0 10.0 94 15-108 39-163 (198)
72 3cv0_A Peroxisome targeting si 97.9 0.00014 4.6E-09 48.2 9.7 93 13-107 20-129 (327)
73 2vsy_A XCC0866; transferase, g 97.9 0.00013 4.5E-09 53.0 10.3 89 14-105 23-129 (568)
74 3edt_B KLC 2, kinesin light ch 97.9 2.6E-05 8.8E-10 50.6 5.9 84 13-96 42-156 (283)
75 1hh8_A P67PHOX, NCF-2, neutrop 97.9 0.00035 1.2E-08 43.9 11.1 90 9-100 32-154 (213)
76 3ieg_A DNAJ homolog subfamily 97.9 6E-05 2E-09 50.4 7.6 92 13-106 2-113 (359)
77 1b89_A Protein (clathrin heavy 97.9 5.8E-05 2E-09 54.4 7.8 100 11-111 119-251 (449)
78 2h6f_A Protein farnesyltransfe 97.9 8.3E-05 2.8E-09 52.3 8.4 92 13-107 130-240 (382)
79 1hxi_A PEX5, peroxisome target 97.9 0.00016 5.5E-09 42.4 8.5 82 17-101 20-119 (121)
80 3fp2_A TPR repeat-containing p 97.8 8.5E-05 2.9E-09 52.7 8.2 84 13-98 309-409 (537)
81 4abn_A Tetratricopeptide repea 97.8 5.5E-05 1.9E-09 54.3 7.2 91 14-107 137-264 (474)
82 3k9i_A BH0479 protein; putativ 97.8 2E-05 6.8E-10 45.7 4.0 75 27-102 3-96 (117)
83 2xev_A YBGF; tetratricopeptide 97.8 0.00031 1.1E-08 40.6 9.2 81 20-103 8-112 (129)
84 4gcn_A Protein STI-1; structur 97.8 0.00068 2.3E-08 39.9 10.5 82 15-99 9-115 (127)
85 2c2l_A CHIP, carboxy terminus 97.8 0.00028 9.5E-09 47.2 9.2 86 13-101 3-106 (281)
86 2h6f_A Protein farnesyltransfe 97.8 0.00014 4.8E-09 51.2 8.0 92 14-108 97-207 (382)
87 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00044 1.5E-08 49.4 10.2 94 14-110 268-394 (457)
88 4abn_A Tetratricopeptide repea 97.7 0.00016 5.6E-09 51.8 8.0 98 9-108 165-299 (474)
89 2vsy_A XCC0866; transferase, g 97.7 0.00075 2.6E-08 49.0 11.4 93 13-107 56-168 (568)
90 3qou_A Protein YBBN; thioredox 97.7 0.00055 1.9E-08 45.8 9.7 57 14-73 117-174 (287)
91 3nf1_A KLC 1, kinesin light ch 97.7 0.00014 4.6E-09 47.9 6.5 85 12-96 67-182 (311)
92 3gyz_A Chaperone protein IPGC; 97.6 0.0002 6.9E-09 44.0 6.3 66 45-110 30-113 (151)
93 3rkv_A Putative peptidylprolyl 97.6 0.00035 1.2E-08 42.4 7.3 86 15-101 12-131 (162)
94 3qky_A Outer membrane assembly 97.6 0.0015 5.1E-08 42.5 10.4 92 13-104 14-134 (261)
95 1wao_1 Serine/threonine protei 97.5 0.00068 2.3E-08 48.8 8.8 82 23-107 15-114 (477)
96 3nf1_A KLC 1, kinesin light ch 97.5 0.00058 2E-08 44.8 7.8 84 12-96 25-140 (311)
97 2e2e_A Formate-dependent nitri 97.5 0.00012 4E-09 45.1 3.9 85 24-110 20-124 (177)
98 2ond_A Cleavage stimulation fa 97.5 0.002 6.8E-08 43.2 10.3 91 12-104 48-171 (308)
99 2ooe_A Cleavage stimulation fa 97.5 0.00063 2.2E-08 49.0 8.2 90 13-105 320-429 (530)
100 2pzi_A Probable serine/threoni 97.4 0.0012 4E-08 49.5 9.4 85 25-109 402-509 (681)
101 2if4_A ATFKBP42; FKBP-like, al 97.4 0.00068 2.3E-08 46.6 7.4 92 15-109 180-306 (338)
102 1ihg_A Cyclophilin 40; ppiase 97.4 0.00088 3E-08 46.7 8.0 93 16-108 225-348 (370)
103 1a17_A Serine/threonine protei 97.4 0.0031 1.1E-07 37.5 9.5 82 12-95 45-145 (166)
104 2ooe_A Cleavage stimulation fa 97.4 0.0023 7.9E-08 46.0 10.2 90 10-102 350-460 (530)
105 3edt_B KLC 2, kinesin light ch 97.4 0.0025 8.5E-08 41.0 9.5 83 13-96 84-198 (283)
106 2vgx_A Chaperone SYCD; alterna 97.3 0.00067 2.3E-08 41.1 6.1 65 46-110 16-98 (148)
107 1na0_A Designed protein CTPR3; 97.3 0.0018 6.1E-08 36.4 7.5 61 11-73 40-100 (125)
108 2yhc_A BAMD, UPF0169 lipoprote 97.3 0.0049 1.7E-07 39.4 10.2 89 16-104 6-133 (225)
109 1na3_A Designed protein CTPR2; 97.3 0.00091 3.1E-08 36.1 5.7 58 13-72 8-65 (91)
110 4g1t_A Interferon-induced prot 97.2 0.0022 7.4E-08 44.9 8.7 96 12-107 49-178 (472)
111 2xcb_A PCRH, regulatory protei 97.2 0.001 3.5E-08 39.6 6.2 65 46-110 13-95 (142)
112 2pzi_A Probable serine/threoni 97.2 0.00076 2.6E-08 50.5 6.3 92 13-108 432-541 (681)
113 1ouv_A Conserved hypothetical 97.2 0.01 3.5E-07 38.6 11.1 15 80-94 199-213 (273)
114 3ro2_A PINS homolog, G-protein 97.1 0.0051 1.7E-07 40.3 9.1 82 16-97 225-333 (338)
115 3q49_B STIP1 homology and U bo 97.1 0.0021 7E-08 37.4 6.4 63 48-110 7-86 (137)
116 3urz_A Uncharacterized protein 97.1 0.0067 2.3E-07 38.4 9.1 51 20-73 60-111 (208)
117 3qwp_A SET and MYND domain-con 97.1 0.0037 1.3E-07 44.7 8.5 89 19-107 292-416 (429)
118 1ouv_A Conserved hypothetical 97.1 0.016 5.5E-07 37.6 11.1 54 16-73 40-101 (273)
119 2lni_A Stress-induced-phosphop 97.0 0.0019 6.4E-08 37.0 5.7 64 46-109 12-92 (133)
120 3mv2_B Coatomer subunit epsilo 97.0 0.018 6.2E-07 39.6 11.3 87 11-98 97-209 (310)
121 3sz7_A HSC70 cochaperone (SGT) 97.0 0.0016 5.6E-08 39.5 5.5 62 49-110 10-88 (164)
122 1qqe_A Vesicular transport pro 97.0 0.011 3.7E-07 39.4 10.0 89 14-102 77-193 (292)
123 1elw_A TPR1-domain of HOP; HOP 97.0 0.0023 8E-08 35.6 5.8 61 49-109 3-80 (118)
124 2l6j_A TPR repeat-containing p 97.0 0.0024 8.2E-08 35.6 5.8 60 12-73 2-61 (111)
125 3qky_A Outer membrane assembly 97.0 0.023 8E-07 36.7 11.2 89 14-102 52-183 (261)
126 3ro3_A PINS homolog, G-protein 97.0 0.014 4.8E-07 34.0 9.3 81 15-95 50-157 (164)
127 3ma5_A Tetratricopeptide repea 97.0 0.015 5.2E-07 32.4 9.8 81 13-95 6-89 (100)
128 2r5s_A Uncharacterized protein 96.9 0.0068 2.3E-07 37.2 8.1 85 13-100 39-141 (176)
129 3upv_A Heat shock protein STI1 96.9 0.0026 8.9E-08 36.7 5.7 60 50-109 4-80 (126)
130 3n71_A Histone lysine methyltr 96.9 0.0059 2E-07 44.4 8.6 84 24-107 319-438 (490)
131 3ro2_A PINS homolog, G-protein 96.9 0.0052 1.8E-07 40.3 7.7 79 17-98 8-114 (338)
132 4gco_A Protein STI-1; structur 96.9 0.0027 9.2E-08 37.3 5.7 60 51-110 14-90 (126)
133 3qww_A SET and MYND domain-con 96.9 0.0089 3E-07 42.8 9.1 82 26-107 310-427 (433)
134 1hxi_A PEX5, peroxisome target 96.9 0.003 1E-07 36.8 5.6 59 52-110 19-94 (121)
135 3gw4_A Uncharacterized protein 96.8 0.012 4E-07 36.2 8.6 83 13-95 65-175 (203)
136 2kck_A TPR repeat; tetratricop 96.8 0.012 4.2E-07 32.3 7.9 60 12-73 38-100 (112)
137 3ro3_A PINS homolog, G-protein 96.8 0.011 3.8E-07 34.5 8.1 83 14-96 9-118 (164)
138 3sf4_A G-protein-signaling mod 96.8 0.0086 3E-07 40.6 8.2 85 11-98 6-118 (406)
139 4a1s_A PINS, partner of inscut 96.8 0.018 6.2E-07 39.3 9.8 80 16-95 265-371 (411)
140 2l6j_A TPR repeat-containing p 96.7 0.011 3.9E-07 32.7 7.2 53 48-100 2-71 (111)
141 3sf4_A G-protein-signaling mod 96.7 0.018 6.2E-07 39.0 9.3 81 15-95 228-335 (406)
142 2kat_A Uncharacterized protein 96.7 0.012 4.2E-07 33.2 7.4 60 12-73 17-76 (115)
143 2r5s_A Uncharacterized protein 96.7 0.0086 2.9E-07 36.7 7.1 90 17-109 9-116 (176)
144 3k9i_A BH0479 protein; putativ 96.7 0.0082 2.8E-07 34.3 6.5 59 13-73 26-84 (117)
145 2qfc_A PLCR protein; TPR, HTH, 96.7 0.026 8.8E-07 37.4 9.8 82 14-95 155-265 (293)
146 2hr2_A Hypothetical protein; a 96.7 0.019 6.4E-07 35.8 8.4 85 17-104 14-139 (159)
147 4a1s_A PINS, partner of inscut 96.7 0.0051 1.7E-07 42.2 6.4 83 14-96 223-332 (411)
148 3u3w_A Transcriptional activat 96.7 0.016 5.6E-07 38.3 8.7 80 17-97 118-226 (293)
149 3q15_A PSP28, response regulat 96.7 0.011 3.8E-07 40.5 8.0 21 75-95 269-289 (378)
150 3ulq_A Response regulator aspa 96.6 0.014 4.8E-07 39.9 8.3 82 14-95 143-252 (383)
151 1qqe_A Vesicular transport pro 96.6 0.012 4.2E-07 39.1 7.8 88 14-101 117-233 (292)
152 2kat_A Uncharacterized protein 96.6 0.015 5.3E-07 32.8 7.2 66 32-99 3-85 (115)
153 2kc7_A BFR218_protein; tetratr 96.6 0.0026 8.8E-08 35.1 3.7 77 21-101 7-95 (99)
154 2vyi_A SGTA protein; chaperone 96.6 0.019 6.4E-07 32.3 7.5 60 12-73 44-103 (131)
155 3u3w_A Transcriptional activat 96.6 0.052 1.8E-06 35.9 10.6 80 16-95 157-265 (293)
156 1na3_A Designed protein CTPR2; 96.5 0.019 6.4E-07 30.6 6.8 61 49-109 8-85 (91)
157 2ifu_A Gamma-SNAP; membrane fu 96.5 0.033 1.1E-06 37.2 9.3 86 14-101 116-228 (307)
158 3mv2_B Coatomer subunit epsilo 96.5 0.011 3.6E-07 40.7 6.8 81 13-96 135-240 (310)
159 1p5q_A FKBP52, FK506-binding p 96.4 0.029 9.8E-07 38.3 8.8 79 14-94 196-292 (336)
160 4f3v_A ESX-1 secretion system 96.4 0.038 1.3E-06 37.5 9.2 83 22-107 143-247 (282)
161 3n71_A Histone lysine methyltr 96.3 0.034 1.1E-06 40.4 9.1 82 14-95 351-463 (490)
162 3gw4_A Uncharacterized protein 96.3 0.054 1.8E-06 33.1 8.8 83 13-95 25-135 (203)
163 2yhc_A BAMD, UPF0169 lipoprote 96.2 0.043 1.5E-06 34.9 8.5 74 26-102 108-219 (225)
164 3ma5_A Tetratricopeptide repea 96.2 0.014 4.9E-07 32.5 5.6 51 49-99 6-73 (100)
165 1elr_A TPR2A-domain of HOP; HO 96.2 0.017 5.9E-07 32.5 5.9 62 11-73 35-102 (131)
166 2dba_A Smooth muscle cell asso 96.2 0.072 2.5E-06 30.7 10.1 83 10-94 57-143 (148)
167 1wao_1 Serine/threonine protei 96.2 0.011 3.7E-07 42.5 6.0 77 13-91 39-134 (477)
168 4g1t_A Interferon-induced prot 96.1 0.014 4.8E-07 40.7 6.2 61 12-73 332-395 (472)
169 3q15_A PSP28, response regulat 96.1 0.026 9E-07 38.6 7.4 58 16-73 224-284 (378)
170 3rjv_A Putative SEL1 repeat pr 96.1 0.039 1.3E-06 34.9 7.8 81 13-98 17-120 (212)
171 2if4_A ATFKBP42; FKBP-like, al 96.0 0.02 6.9E-07 39.1 6.4 84 16-101 232-333 (338)
172 4gcn_A Protein STI-1; structur 96.0 0.014 4.9E-07 34.0 4.8 53 52-104 10-79 (127)
173 3ulq_A Response regulator aspa 96.0 0.027 9.2E-07 38.5 6.8 83 14-96 184-293 (383)
174 2ifu_A Gamma-SNAP; membrane fu 95.9 0.017 5.8E-07 38.7 5.6 85 14-99 76-187 (307)
175 2xev_A YBGF; tetratricopeptide 95.9 0.044 1.5E-06 31.1 6.8 76 16-94 41-120 (129)
176 2qfc_A PLCR protein; TPR, HTH, 95.9 0.18 6.2E-06 33.2 10.4 78 19-96 120-225 (293)
177 4f3v_A ESX-1 secretion system 95.9 0.065 2.2E-06 36.3 8.2 74 19-95 107-199 (282)
178 2c2l_A CHIP, carboxy terminus 95.9 0.024 8.2E-07 37.6 6.1 61 49-109 3-80 (281)
179 1xi4_A Clathrin heavy chain; a 95.8 0.058 2E-06 44.3 8.9 89 13-111 1194-1324(1630)
180 1zu2_A Mitochondrial import re 95.4 0.026 8.9E-07 35.1 4.5 78 25-105 13-129 (158)
181 1pc2_A Mitochondria fission pr 95.2 0.21 7.1E-06 30.8 8.2 60 12-73 30-94 (152)
182 3rkv_A Putative peptidylprolyl 95.1 0.1 3.6E-06 31.1 6.6 58 14-73 63-120 (162)
183 2kc7_A BFR218_protein; tetratr 95.1 0.074 2.5E-06 28.9 5.5 48 57-104 7-72 (99)
184 1v54_E Cytochrome C oxidase po 94.7 0.11 3.8E-06 30.1 5.4 44 29-73 25-68 (109)
185 1hz4_A MALT regulatory protein 94.7 0.29 9.8E-06 33.0 8.6 81 16-96 95-203 (373)
186 4e6h_A MRNA 3'-END-processing 94.6 0.31 1.1E-05 36.9 9.3 71 28-100 484-574 (679)
187 1hz4_A MALT regulatory protein 94.4 0.51 1.8E-05 31.8 9.4 84 16-99 55-167 (373)
188 1xi4_A Clathrin heavy chain; a 94.4 0.25 8.4E-06 40.8 8.6 59 12-73 1132-1190(1630)
189 2fbn_A 70 kDa peptidylprolyl i 94.4 0.21 7.3E-06 30.8 6.9 57 15-73 89-145 (198)
190 2xm6_A Protein corresponding t 94.1 0.33 1.1E-05 34.4 8.1 79 16-98 330-434 (490)
191 1ihg_A Cyclophilin 40; ppiase 93.9 0.46 1.6E-05 32.9 8.4 58 13-73 272-330 (370)
192 4b4t_Q 26S proteasome regulato 93.8 0.8 2.7E-05 31.3 9.5 82 14-95 135-244 (434)
193 3qww_A SET and MYND domain-con 93.8 0.31 1.1E-05 34.8 7.5 60 14-73 340-405 (433)
194 4e6h_A MRNA 3'-END-processing 93.7 0.43 1.5E-05 36.1 8.5 83 15-98 435-535 (679)
195 4b4t_Q 26S proteasome regulato 93.4 0.56 1.9E-05 32.1 8.2 25 17-41 58-82 (434)
196 3qwp_A SET and MYND domain-con 93.3 0.32 1.1E-05 34.6 6.9 60 14-73 329-394 (429)
197 3rjv_A Putative SEL1 repeat pr 93.3 0.9 3.1E-05 28.5 10.2 41 29-73 68-112 (212)
198 2y69_E Cytochrome C oxidase su 93.2 0.28 9.5E-06 29.9 5.4 44 29-73 68-111 (152)
199 1kt0_A FKBP51, 51 kDa FK506-bi 93.2 0.67 2.3E-05 32.9 8.4 58 14-73 317-374 (457)
200 3bee_A Putative YFRE protein; 93.1 0.59 2E-05 25.9 7.2 28 75-102 51-78 (93)
201 3qou_A Protein YBBN; thioredox 92.9 0.56 1.9E-05 30.9 7.3 68 24-93 195-281 (287)
202 2v5f_A Prolyl 4-hydroxylase su 92.7 0.71 2.4E-05 25.7 7.0 58 16-73 7-69 (104)
203 2xm6_A Protein corresponding t 92.6 1.9 6.5E-05 30.4 11.0 43 27-73 200-246 (490)
204 2hr2_A Hypothetical protein; a 92.5 0.75 2.6E-05 28.4 6.9 58 15-73 58-125 (159)
205 3ly7_A Transcriptional activat 91.4 1.2 4.1E-05 31.4 7.6 54 48-101 275-344 (372)
206 3mkq_A Coatomer beta'-subunit; 91.2 0.78 2.7E-05 34.2 7.0 29 13-41 680-708 (814)
207 3mkq_A Coatomer beta'-subunit; 90.9 2.1 7.2E-05 31.8 9.1 44 23-73 661-704 (814)
208 1dce_A Protein (RAB geranylger 90.7 3.6 0.00012 30.2 10.1 94 12-107 105-232 (567)
209 2v5f_A Prolyl 4-hydroxylase su 90.0 1.5 5.1E-05 24.3 7.6 55 49-103 4-82 (104)
210 1zu2_A Mitochondrial import re 87.4 0.23 8E-06 30.7 1.5 29 83-111 62-90 (158)
211 3u64_A Protein TP_0956; tetrat 87.0 3.9 0.00014 27.9 7.4 67 30-99 179-272 (301)
212 3ly7_A Transcriptional activat 86.8 1.9 6.4E-05 30.4 5.9 60 11-73 274-333 (372)
213 1nzn_A CGI-135 protein, fissio 86.1 3.7 0.00013 24.3 9.2 29 75-103 82-110 (126)
214 1v54_E Cytochrome C oxidase po 85.6 3.7 0.00013 23.7 6.9 53 5-59 36-88 (109)
215 2ff4_A Probable regulatory pro 85.6 3.6 0.00012 28.7 6.9 53 19-73 176-228 (388)
216 2uy1_A Cleavage stimulation fa 85.0 8.5 0.00029 27.6 8.8 66 28-95 334-412 (493)
217 3dra_A Protein farnesyltransfe 84.2 7.7 0.00026 26.2 8.1 78 28-107 124-226 (306)
218 2uy1_A Cleavage stimulation fa 83.8 9.9 0.00034 27.3 8.7 75 15-93 287-380 (493)
219 1pc2_A Mitochondria fission pr 83.3 5.9 0.0002 24.2 11.0 75 27-103 11-107 (152)
220 2yru_A Steroid receptor RNA ac 82.7 1.5 5.2E-05 25.7 3.4 37 36-73 48-84 (118)
221 1dce_A Protein (RAB geranylger 81.2 9 0.00031 28.1 7.8 75 30-106 89-183 (567)
222 3e4b_A ALGK; tetratricopeptide 80.6 12 0.00043 26.2 9.8 13 28-40 231-243 (452)
223 3u64_A Protein TP_0956; tetrat 79.9 7 0.00024 26.7 6.3 82 10-94 192-296 (301)
224 3mkq_B Coatomer subunit alpha; 79.7 9 0.00031 24.0 7.8 80 13-93 33-141 (177)
225 2ff4_A Probable regulatory pro 77.8 4.5 0.00015 28.2 5.1 44 11-54 202-249 (388)
226 4gns_B Protein CSD3, chitin bi 77.2 18 0.0006 28.0 8.4 35 77-111 347-381 (754)
227 2y69_E Cytochrome C oxidase su 76.5 11 0.00036 23.0 6.9 34 8-41 82-115 (152)
228 3dra_A Protein farnesyltransfe 76.1 15 0.00052 24.8 9.9 83 17-102 70-181 (306)
229 3e4b_A ALGK; tetratricopeptide 75.7 18 0.00062 25.3 9.8 78 16-95 178-279 (452)
230 3dss_A Geranylgeranyl transfer 73.5 19 0.00066 24.7 9.7 92 12-105 106-231 (331)
231 1wy6_A Hypothetical protein ST 73.4 13 0.00046 22.8 7.2 59 13-73 90-148 (172)
232 3dss_A Geranylgeranyl transfer 72.6 20 0.00069 24.6 8.2 89 11-101 141-272 (331)
233 3q7a_A Farnesyltransferase alp 72.4 21 0.00073 24.7 9.2 81 21-104 60-162 (349)
234 3q7a_A Farnesyltransferase alp 71.4 23 0.00077 24.6 9.4 91 13-105 87-205 (349)
235 3ffl_A Anaphase-promoting comp 70.4 14 0.00049 23.0 5.5 36 75-111 130-165 (167)
236 1klx_A Cysteine rich protein B 70.2 13 0.00045 21.4 11.3 74 20-97 31-127 (138)
237 1zbp_A Hypothetical protein VP 70.1 22 0.00075 23.9 10.1 50 22-73 5-54 (273)
238 3bu8_A Telomeric repeat-bindin 66.7 15 0.00052 24.0 5.1 45 29-73 87-137 (235)
239 1klx_A Cysteine rich protein B 65.0 17 0.00059 20.8 7.8 57 13-73 56-120 (138)
240 3lvg_A Clathrin heavy chain 1; 64.9 0.95 3.2E-05 33.7 -0.8 58 13-73 82-139 (624)
241 3f3f_C Nucleoporin NUP85; stru 62.2 4.9 0.00017 30.0 2.5 45 28-73 495-539 (570)
242 2fu4_A Ferric uptake regulatio 61.5 16 0.00054 19.1 4.8 63 3-67 6-69 (83)
243 4h7y_A Dual specificity protei 61.5 20 0.0007 22.1 4.8 85 13-99 12-126 (161)
244 1mzb_A Ferric uptake regulatio 61.0 21 0.00072 20.8 4.9 63 4-68 8-71 (136)
245 3bee_A Putative YFRE protein; 60.3 18 0.00063 19.5 6.8 59 12-74 4-66 (93)
246 1nzn_A CGI-135 protein, fissio 58.8 25 0.00087 20.7 7.2 81 12-94 33-118 (126)
247 2dod_A Transcription elongatio 58.5 13 0.00044 20.3 3.3 36 29-65 15-50 (82)
248 4b4t_S RPN3, 26S proteasome re 58.2 28 0.00096 25.7 5.9 51 50-100 231-303 (523)
249 2fe3_A Peroxide operon regulat 57.9 27 0.00092 20.7 5.2 63 4-68 12-74 (145)
250 1zbp_A Hypothetical protein VP 56.3 25 0.00087 23.6 5.0 43 58-100 5-64 (273)
251 4gns_B Protein CSD3, chitin bi 54.6 23 0.00078 27.3 5.1 47 24-73 347-394 (754)
252 3eyy_A Putative iron uptake re 54.5 24 0.00081 21.0 4.3 62 4-68 9-70 (145)
253 4b4t_R RPN7, 26S proteasome re 54.4 28 0.00095 24.5 5.3 80 16-95 133-236 (429)
254 2w57_A Ferric uptake regulatio 54.3 30 0.001 20.6 4.8 64 3-68 6-70 (150)
255 3qye_A TBC1 domain family memb 52.5 28 0.00096 23.5 4.9 45 2-47 211-255 (331)
256 2b7e_A PRE-mRNA processing pro 51.9 11 0.00038 19.2 2.2 33 31-64 3-36 (59)
257 3lpz_A GET4 (YOR164C homolog); 51.0 58 0.002 22.6 6.3 40 51-90 36-78 (336)
258 1uzc_A Hypothetical protein FL 50.1 17 0.00059 19.1 2.8 35 29-64 13-47 (71)
259 2xig_A Ferric uptake regulatio 48.4 28 0.00094 20.8 4.0 62 5-68 18-79 (150)
260 2qfz_A TBC1 domain family memb 44.1 72 0.0025 21.6 6.3 71 2-73 232-309 (345)
261 2wpv_A GET4, UPF0363 protein Y 42.7 78 0.0027 21.6 6.3 39 51-89 34-75 (312)
262 4ets_A Ferric uptake regulatio 42.1 34 0.0011 20.8 3.7 60 6-67 25-86 (162)
263 4aez_C MAD3, mitotic spindle c 41.9 45 0.0016 21.7 4.4 42 31-73 131-173 (223)
264 1oai_A Nuclear RNA export fact 40.3 26 0.00087 17.7 2.5 25 26-50 32-56 (59)
265 4a1g_A Mitotic checkpoint seri 40.1 62 0.0021 19.7 5.5 21 75-95 109-129 (152)
266 2bn5_A PSI; nuclear protein, s 38.2 29 0.001 15.4 2.6 21 74-94 8-29 (33)
267 3esl_A Checkpoint serine/threo 38.0 78 0.0027 20.2 7.8 46 27-73 92-138 (202)
268 2i2x_B MTAC, methyltransferase 37.4 11 0.00036 24.9 0.9 69 3-73 17-94 (258)
269 1xqo_A 8-oxoguanine DNA glycos 37.1 38 0.0013 22.6 3.4 33 31-65 197-232 (256)
270 2ekk_A UBA domain from E3 ubiq 36.9 36 0.0012 16.0 2.7 18 56-73 26-43 (47)
271 4b4t_R RPN7, 26S proteasome re 36.8 61 0.0021 22.8 4.8 45 51-95 132-196 (429)
272 3hzj_A Rabgap1L, RAB GTPase-ac 35.8 41 0.0014 22.4 3.6 70 2-73 177-250 (310)
273 3mwm_A ZUR, putative metal upt 35.1 36 0.0012 19.9 3.0 62 5-68 5-66 (139)
274 3bqo_A Telomeric repeat-bindin 35.1 27 0.00091 22.6 2.4 20 75-94 125-144 (211)
275 2qq8_A TBC1 domain family memb 34.3 30 0.001 23.5 2.8 39 4-42 218-256 (334)
276 2o03_A Probable zinc uptake re 32.9 38 0.0013 19.6 2.8 48 20-68 16-63 (131)
277 2wvi_A Mitotic checkpoint seri 32.6 88 0.003 19.2 5.5 40 33-73 79-119 (164)
278 1wy6_A Hypothetical protein ST 31.2 94 0.0032 19.1 8.0 49 49-97 90-155 (172)
279 2nsz_A Programmed cell death p 30.5 82 0.0028 18.2 4.5 47 16-64 9-55 (129)
280 1u9p_A PARC; unknown function; 30.3 79 0.0027 18.5 3.7 61 6-66 38-107 (120)
281 3ygs_P Procaspase 9; apoptosis 29.6 74 0.0025 17.4 4.5 39 28-71 51-89 (97)
282 2ilr_A Protein FACE, fanconi a 29.4 1.3E+02 0.0044 20.1 5.3 58 4-64 150-208 (264)
283 3txn_A 26S proteasome regulato 28.0 1.6E+02 0.0054 20.7 7.6 76 19-94 104-208 (394)
284 3cqc_A Nuclear pore complex pr 27.4 51 0.0017 21.9 2.9 25 18-42 38-62 (270)
285 2ko4_A Mediator of RNA polymer 26.5 60 0.002 17.6 2.5 30 9-38 31-60 (81)
286 3o48_A Mitochondria fission 1 25.7 1.1E+02 0.0038 18.2 8.2 27 75-101 86-112 (134)
287 2whn_A PILC, pilus assembly pr 25.5 49 0.0017 18.3 2.3 22 52-73 78-99 (116)
288 1ixm_A SPO0B, protein (sporula 25.1 66 0.0023 20.1 3.0 24 19-42 37-60 (192)
289 2cos_A Serine/threonine protei 24.8 59 0.002 16.2 2.2 33 4-41 15-49 (54)
290 2ion_A PDCD4, programmed cell 24.8 1.2E+02 0.0041 18.2 4.8 48 16-65 11-58 (152)
291 4ewi_A Nacht, LRR and PYD doma 23.1 58 0.002 18.7 2.3 25 18-42 59-83 (113)
292 3esl_A Checkpoint serine/threo 22.8 1.6E+02 0.0053 18.8 6.9 43 52-95 82-143 (202)
293 3ctd_A Putative ATPase, AAA fa 22.7 1.5E+02 0.005 19.2 4.3 48 19-67 37-87 (213)
294 2hm2_Q ASC2, pyrin-only protei 22.3 64 0.0022 17.4 2.3 25 18-42 54-78 (89)
295 4b4t_P 26S proteasome regulato 22.2 2.1E+02 0.0072 20.2 10.1 88 15-102 178-276 (445)
296 2keb_A DNA polymerase subunit 22.2 1.2E+02 0.004 17.2 5.7 59 32-93 27-88 (101)
297 1qsa_A Protein (soluble lytic 22.2 2.5E+02 0.0086 21.0 6.8 46 58-107 293-355 (618)
298 2pk8_A Uncharacterized protein 21.8 28 0.00094 19.6 0.6 15 3-17 27-41 (103)
299 4b4t_O 26S proteasome regulato 21.2 2.1E+02 0.0073 19.8 5.6 53 21-73 83-150 (393)
300 2rg8_A Programmed cell death p 20.9 1E+02 0.0034 18.8 3.2 45 16-62 12-56 (165)
301 3kae_A CDC27, possible protein 20.4 1.8E+02 0.0061 18.6 9.8 48 25-73 73-137 (242)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.92 E-value=3e-25 Score=161.40 Aligned_cols=109 Identities=16% Similarity=0.163 Sum_probs=99.1
Q ss_pred ChHHHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------
Q 033770 1 MVDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL------- 73 (112)
Q Consensus 1 l~~~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f------- 73 (112)
+|++|++.|+.||.+|||+||++|++.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|
T Consensus 92 lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G 170 (501)
T 4g26_A 92 IFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKA-FGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE 170 (501)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 589999999999999999999999999999999999999997 899999999999999999999999999999
Q ss_pred -------H----HHHHhhCChhHHHHHHHHHHhcC-CCCCcchhhhhcc
Q 033770 74 -------W----SACKIHGAVKLSHEVGKRLLELQ-PEHCRRYVVLSNV 110 (112)
Q Consensus 74 -------~----~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~l~~~ 110 (112)
| .+|++.|++++|.+++++|.+.+ .++..+|.+|...
T Consensus 171 ~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~ 219 (501)
T 4g26_A 171 VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEW 219 (501)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 3 99999999999999999999733 2355666666543
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.92 E-value=8.6e-25 Score=159.00 Aligned_cols=110 Identities=17% Similarity=0.238 Sum_probs=99.3
Q ss_pred ChHHHhhcCCCCCHHHHHHHHHHHhccCc---------HHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHH
Q 033770 1 MVDEMYEKGLRANEVTFVAVLTACARARL---------VELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANE 71 (112)
Q Consensus 1 l~~~M~~~g~~p~~~t~~~li~~~~~~~~---------~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 71 (112)
+|++|++.|++||.+|||+||++|++.+. +++|.++|++|.. .|+.||..|||+||++|++.|++++|.+
T Consensus 48 lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~-~G~~Pd~~tyn~lI~~~~~~g~~~~A~~ 126 (501)
T 4g26_A 48 LYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV-DKVVPNEATFTNGARLAVAKDDPEMAFD 126 (501)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 58999999999999999999999997654 7999999999997 8999999999999999999999999999
Q ss_pred HH--------------H----HHHHhhCChhHHHHHHHHHHhcC-CCCCcchhhhhccc
Q 033770 72 FL--------------W----SACKIHGAVKLSHEVGKRLLELQ-PEHCRRYVVLSNVH 111 (112)
Q Consensus 72 ~f--------------~----~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~l~~~y 111 (112)
+| | .+|++.|++++|.++|++|.+.+ .++..+|..|++.|
T Consensus 127 l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 127 MVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 99 4 99999999999999999999744 34666777777665
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.74 E-value=7.7e-18 Score=129.64 Aligned_cols=71 Identities=14% Similarity=0.099 Sum_probs=54.4
Q ss_pred hHHHh---hcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCCh-hHHHHHH
Q 033770 2 VDEMY---EKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLL-SEANEFL 73 (112)
Q Consensus 2 ~~~M~---~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~f 73 (112)
|++|. +.|+.||++|||+||++||+.|++++|.++|++|.. .|+.||++|||+||+++|+.|+. ++|.++|
T Consensus 150 f~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~-~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll 224 (1134)
T 3spa_A 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD-AGLTPDLLSYAAALQCMGRQDQDAGTIERCL 224 (1134)
T ss_dssp HHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 44443 457788888888888888888888888888888886 68888888888888888888774 5677777
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.74 E-value=3.8e-18 Score=131.30 Aligned_cols=86 Identities=13% Similarity=0.149 Sum_probs=77.0
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhh--ccCCCcCHHHHHHHHHHHHhcCChhHHHHHH--------------H-
Q 033770 12 ANEVTFVAVLTACARARLVELGLELFHSLLG--EFEVVPIMEHYGCVVDLLGRAGLLSEANEFL--------------W- 74 (112)
Q Consensus 12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~--~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f--------------~- 74 (112)
--..|||+||++||+.|++++|..+|+.|.+ +.|+.||++|||+||++||+.|++++|.++| |
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3457999999999999999999999988763 2589999999999999999999999999999 3
Q ss_pred ---HHHHhhCCh-hHHHHHHHHHHhcC
Q 033770 75 ---SACKIHGAV-KLSHEVGKRLLELQ 97 (112)
Q Consensus 75 ---~~~~~~g~~-~~a~~~~~~m~~~~ 97 (112)
.++|+.|+. +.|.++|++|.+.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 899999985 78999999999744
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.35 E-value=1.3e-11 Score=89.36 Aligned_cols=109 Identities=8% Similarity=0.021 Sum_probs=94.1
Q ss_pred hHHHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhcc----CCCcC--HHHHHHHHHHHHhcCChhHHHHHH--
Q 033770 2 VDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEF----EVVPI--MEHYGCVVDLLGRAGLLSEANEFL-- 73 (112)
Q Consensus 2 ~~~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~----g~~p~--~~~~~~li~~~~~~g~~~~A~~~f-- 73 (112)
|++|.+.. +.|..+|+.+...+.+.|++++|..+|+++.. . +..|+ ..+|+.+..+|.+.|++++|.++|
T Consensus 464 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (597)
T 2xpi_A 464 LQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALL-LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541 (597)
T ss_dssp HHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH-hhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 45555443 45788999999999999999999999999875 4 77787 789999999999999999999998
Q ss_pred -----------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcccC
Q 033770 74 -----------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNVHT 112 (112)
Q Consensus 74 -----------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~ya 112 (112)
| ..|.+.|++++|.+.++++.+..|+++..+..|.++|.
T Consensus 542 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 542 GLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 3 88899999999999999999999999999999988874
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.18 E-value=1.5e-10 Score=83.80 Aligned_cols=94 Identities=13% Similarity=-0.014 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S 75 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~ 75 (112)
+..+|+.+...|.+.|++++|.++|+++.+ . -+.+..+|+.++.+|.+.|++++|.++| | .
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 449 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSST-M-DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGM 449 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444555555555555555555555555442 1 1123445555555555555555555555 1 4
Q ss_pred HHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770 76 ACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS 108 (112)
Q Consensus 76 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~ 108 (112)
.|.+.|++++|.++|+++.+..|.++..+..+.
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 482 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALFQYDPLLLNELG 482 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 455555555555555555555555444444443
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.75 E-value=1.2e-07 Score=65.29 Aligned_cols=93 Identities=12% Similarity=0.158 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S 75 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~ 75 (112)
+..+|..+...+.+.|++++|...++++.+ . .+.+..+++.+...|.+.|++++|.+.| | .
T Consensus 270 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 347 (388)
T 1w3b_A 270 FPDAYCNLANALKEKGSVAEAEDCYNTALR-L-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS 347 (388)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-h-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 345666666666777777777777766664 2 2346666677777777777777777766 1 5
Q ss_pred HHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770 76 ACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL 107 (112)
Q Consensus 76 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l 107 (112)
.+.+.|+.++|.+.++++.+..|+.+..+..+
T Consensus 348 ~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~l 379 (388)
T 1w3b_A 348 VLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379 (388)
T ss_dssp HHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhH
Confidence 66677777777777777777777665555444
No 8
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.67 E-value=3.2e-07 Score=52.72 Aligned_cols=93 Identities=18% Similarity=0.221 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HH
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SA 76 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~ 76 (112)
..+|..+-..+.+.|++++|...++++.. .. +.+...+..+...|.+.|++++|.+.| | ..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALE-LD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 56788888999999999999999999985 32 346788999999999999999999998 2 77
Q ss_pred HHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770 77 CKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS 108 (112)
Q Consensus 77 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~ 108 (112)
+...|+.++|...++++.+..|.++.....+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 118 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 118 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 88899999999999999998888776555444
No 9
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.63 E-value=3.8e-07 Score=52.87 Aligned_cols=85 Identities=19% Similarity=0.246 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S 75 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~ 75 (112)
+..++..+...+...|++++|..+++++.. .+ +.+...+..+...|.+.|++++|.+.| | .
T Consensus 34 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 111 (136)
T 2fo7_A 34 SAEAWYNLGNAYYKQGDYDEAIEYYQKALE-LD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN 111 (136)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhcCHHHHHHHHHHHHH-HC-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 455566666666666777777777766654 22 234556666666667777777776666 1 5
Q ss_pred HHHhhCChhHHHHHHHHHHhcCCC
Q 033770 76 ACKIHGAVKLSHEVGKRLLELQPE 99 (112)
Q Consensus 76 ~~~~~g~~~~a~~~~~~m~~~~~~ 99 (112)
.+...|+.++|...++++.+..|.
T Consensus 112 ~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 112 AYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHccHHHHHHHHHHHHccCCC
Confidence 556666777777777666655553
No 10
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.63 E-value=1.1e-06 Score=50.84 Aligned_cols=92 Identities=20% Similarity=0.264 Sum_probs=76.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHH
Q 033770 16 TFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACK 78 (112)
Q Consensus 16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~ 78 (112)
.|..+...+...|++++|..+++++.. .. +.+...+..+...+.+.|++++|.+.| | ..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALE-LD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHH-cC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 567788889999999999999999885 33 346788889999999999999999998 2 6778
Q ss_pred hhCChhHHHHHHHHHHhcCCCCCcchhhhhc
Q 033770 79 IHGAVKLSHEVGKRLLELQPEHCRRYVVLSN 109 (112)
Q Consensus 79 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~ 109 (112)
..|+.++|.+.++++.+..|.++..+..+..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 111 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGN 111 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 8999999999999999888877655544443
No 11
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.60 E-value=4.8e-07 Score=62.32 Aligned_cols=98 Identities=15% Similarity=0.267 Sum_probs=79.8
Q ss_pred CC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H--
Q 033770 11 RA-NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W-- 74 (112)
Q Consensus 11 ~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~-- 74 (112)
.| +..++..+...+.+.|++++|...++++.. .. +.+..+|..+...|.+.|++++|.+.| |
T Consensus 233 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 310 (388)
T 1w3b_A 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE-LQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNN 310 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHH
Confidence 44 478888899999999999999999999885 22 225778899999999999999999998 2
Q ss_pred --HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770 75 --SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNV 110 (112)
Q Consensus 75 --~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~ 110 (112)
..+...|+.++|.+.++++.+..|+++..+..+..+
T Consensus 311 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 348 (388)
T 1w3b_A 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 777888999999999999998888876666555443
No 12
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.58 E-value=4.7e-07 Score=61.22 Aligned_cols=27 Identities=15% Similarity=0.130 Sum_probs=12.4
Q ss_pred HHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770 76 ACKIHGAVKLSHEVGKRLLELQPEHCR 102 (112)
Q Consensus 76 ~~~~~g~~~~a~~~~~~m~~~~~~~~~ 102 (112)
++.+.|++++|++.+++..+..|+++.
T Consensus 209 ~~~~~g~~~eA~~~l~~al~~~p~~~~ 235 (291)
T 3mkr_A 209 CHMAQGRWEAAEGVLQEALDKDSGHPE 235 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 334444444444444444444444443
No 13
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.51 E-value=1.4e-06 Score=50.71 Aligned_cols=98 Identities=7% Similarity=-0.068 Sum_probs=81.8
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H--
Q 033770 10 LRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W-- 74 (112)
Q Consensus 10 ~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~-- 74 (112)
.+.+...|..+-..+.+.|++++|...+++... . -..+...+..+-..|.+.|++++|.+.| |
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 89 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIK-R-NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR 89 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHT-T-CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-c-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHH
Confidence 355777888889999999999999999999875 2 2237888999999999999999999999 2
Q ss_pred --HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhc
Q 033770 75 --SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSN 109 (112)
Q Consensus 75 --~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~ 109 (112)
..+...|+.++|.+.+++..+..|.+...+..+..
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 126 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQR 126 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 77888999999999999999988877665554443
No 14
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.50 E-value=1.7e-06 Score=52.84 Aligned_cols=92 Identities=15% Similarity=0.010 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S 75 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~ 75 (112)
+..++..+...+...|++++|...+++..+ . .+.+...+..+...|.+.|++++|.+.| | .
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 118 (186)
T 3as5_A 41 DVDVALHLGIAYVKTGAVDRGTELLERSLA-D-APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGV 118 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHH
Confidence 455555666666666666666666666553 2 1224555566666666666666666666 1 4
Q ss_pred HHHhhCChhHHHHHHHHHHhcCCCCCcchhh
Q 033770 76 ACKIHGAVKLSHEVGKRLLELQPEHCRRYVV 106 (112)
Q Consensus 76 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 106 (112)
.+...|+.++|.+.+++..+..|.++..+..
T Consensus 119 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 149 (186)
T 3as5_A 119 ALDNLGRFDEAIDSFKIALGLRPNEGKVHRA 149 (186)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHhcCccchHHHHH
Confidence 4555566666666666665555554444333
No 15
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.50 E-value=2e-06 Score=55.59 Aligned_cols=89 Identities=7% Similarity=-0.101 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W---- 74 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~---- 74 (112)
+...+..+-..+.+.|++++|..++++... .+..| +...+..+...|.+.|++++|.+.| |
T Consensus 104 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la 182 (252)
T 2ho1_A 104 NARVLNNYGGFLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMA 182 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 344555555555555555555555555543 22333 3444455555555555555555555 1
Q ss_pred HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770 75 SACKIHGAVKLSHEVGKRLLELQPEHCR 102 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 102 (112)
..+...|+.++|...+++..+..|.++.
T Consensus 183 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 210 (252)
T 2ho1_A 183 DLLYKEREYVPARQYYDLFAQGGGQNAR 210 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSCCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCcHH
Confidence 4444455555555555555544444433
No 16
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.48 E-value=3.5e-06 Score=53.90 Aligned_cols=87 Identities=13% Similarity=0.196 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S 75 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~ 75 (112)
+...+..+-..+.+.|++++|...+++... .. +.+...+..+...|.+.|++++|.+.+ | .
T Consensus 56 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 133 (243)
T 2q7f_A 56 DAIPYINFANLLSSVNELERALAFYDKALE-LD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGT 133 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 344555555555555555555555555543 11 124445555555555555555555555 1 3
Q ss_pred HHHhhCChhHHHHHHHHHHhcCCCCC
Q 033770 76 ACKIHGAVKLSHEVGKRLLELQPEHC 101 (112)
Q Consensus 76 ~~~~~g~~~~a~~~~~~m~~~~~~~~ 101 (112)
.+...|+.++|...+++..+..|.++
T Consensus 134 ~~~~~~~~~~A~~~~~~~~~~~~~~~ 159 (243)
T 2q7f_A 134 VLVKLEQPKLALPYLQRAVELNENDT 159 (243)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCccH
Confidence 34444555555555555444444433
No 17
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.47 E-value=7.9e-07 Score=62.02 Aligned_cols=89 Identities=15% Similarity=0.017 Sum_probs=79.0
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H---
Q 033770 11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W--- 74 (112)
Q Consensus 11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~--- 74 (112)
+.+...+..+...+.+.|++++|..+|+++.. . .+.+...|..+...|.+.|++++|.+.| |
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~-~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVD-G-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-h-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 44677889999999999999999999999985 2 3347899999999999999999999999 2
Q ss_pred -HHHHhhCChhHHHHHHHHHHhcCCCCC
Q 033770 75 -SACKIHGAVKLSHEVGKRLLELQPEHC 101 (112)
Q Consensus 75 -~~~~~~g~~~~a~~~~~~m~~~~~~~~ 101 (112)
..+.+.|++++|.+.|+++.+..|.++
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 128 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPSEN 128 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence 788899999999999999999888766
No 18
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.47 E-value=1.7e-06 Score=51.55 Aligned_cols=92 Identities=5% Similarity=-0.081 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHH
Q 033770 15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SAC 77 (112)
Q Consensus 15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~ 77 (112)
..+...=..+.+.|++++|...|++..+ .. +.+...|.-+-..|.+.|++++|.+.| | .++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVK-RD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3455556678899999999999999875 22 237888999999999999999999999 3 788
Q ss_pred HhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770 78 KIHGAVKLSHEVGKRLLELQPEHCRRYVVLS 108 (112)
Q Consensus 78 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~ 108 (112)
...|++++|.+.|++..+++|+++....-|.
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVR 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 8999999999999999999999877655443
No 19
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.46 E-value=3.1e-06 Score=53.37 Aligned_cols=93 Identities=9% Similarity=-0.065 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHHhcc-CcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H---
Q 033770 13 NEVTFVAVLTACARA-RLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W--- 74 (112)
Q Consensus 13 ~~~t~~~li~~~~~~-~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~--- 74 (112)
+..++..+...+... |++++|...+++... .+..| +...+..+...|.+.|++++|.+.| |
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 153 (225)
T 2vq2_A 75 SAEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKEL 153 (225)
T ss_dssp CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 556666777777777 777777777777764 33333 3556667777777777777777777 1
Q ss_pred -HHHHhhCChhHHHHHHHHHHhcCC-CCCcchhh
Q 033770 75 -SACKIHGAVKLSHEVGKRLLELQP-EHCRRYVV 106 (112)
Q Consensus 75 -~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~ 106 (112)
..+...|+.++|.+.+++..+..| .++..+..
T Consensus 154 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 187 (225)
T 2vq2_A 154 ARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLL 187 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 566677777777777777776666 55444433
No 20
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.46 E-value=2.2e-06 Score=49.52 Aligned_cols=95 Identities=12% Similarity=0.019 Sum_probs=79.8
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----
Q 033770 12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W---- 74 (112)
Q Consensus 12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~---- 74 (112)
.+...+..+-..+...|++++|...+++... . .+.+...+..+...|.+.|++++|.+.+ |
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIE-L-NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHH-c-CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 4567788888899999999999999999875 2 2336788899999999999999999998 2
Q ss_pred HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770 75 SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS 108 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~ 108 (112)
..+...|+.++|...+++..+..|.++..+..+.
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 121 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLK 121 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 7788999999999999999998888766555443
No 21
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.45 E-value=3.5e-06 Score=58.76 Aligned_cols=85 Identities=11% Similarity=-0.028 Sum_probs=74.4
Q ss_pred HHHHhccCcHHHHHHHHHHhhhccCCCcC-----HHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHH
Q 033770 21 LTACARARLVELGLELFHSLLGEFEVVPI-----MEHYGCVVDLLGRAGLLSEANEFL-------------W----SACK 78 (112)
Q Consensus 21 i~~~~~~~~~~~a~~~~~~m~~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~ 78 (112)
...+.+.|++++|...++++.. ..|+ ...|..+...+.+.|++++|.+.+ | ..|.
T Consensus 264 ~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 340 (450)
T 2y4t_A 264 AEELIRDGRYTDATSKYESVMK---TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL 340 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH---HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 7889999999999999999985 2344 457899999999999999999998 3 8889
Q ss_pred hhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770 79 IHGAVKLSHEVGKRLLELQPEHCRRYVVLS 108 (112)
Q Consensus 79 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~ 108 (112)
..|+.++|...+++..+..|+++..+..+.
T Consensus 341 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 341 IEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 999999999999999999999877766665
No 22
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.44 E-value=2.8e-06 Score=52.72 Aligned_cols=94 Identities=14% Similarity=0.141 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH------------------
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL------------------ 73 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f------------------ 73 (112)
+...|..+=..+.+.|++++|...|++..+ . .| +...+..+-..|.+.|++++|.+.+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~-~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK-A--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 455666666666777777777777776654 2 23 5566666666777777777777666
Q ss_pred -----------------------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhc
Q 033770 74 -----------------------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSN 109 (112)
Q Consensus 74 -----------------------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~ 109 (112)
| ..+.+.|+.++|.+.|++..+..|.++..+..+..
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~ 149 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGL 149 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHH
Confidence 1 56667778888888888877777777665554443
No 23
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.44 E-value=3.6e-06 Score=47.77 Aligned_cols=94 Identities=9% Similarity=-0.028 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S 75 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~ 75 (112)
+...+..+-..+...|++++|...+++... . .+.+...+..+-..|.+.|++++|.+.+ | .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIK-L-DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH-H-CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 455677788889999999999999999875 2 2237788888999999999999999998 2 7
Q ss_pred HHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770 76 ACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS 108 (112)
Q Consensus 76 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~ 108 (112)
.+...|+.++|.+.+++..+..|.++.....+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 113 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 888899999999999999998888776555443
No 24
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.43 E-value=3.3e-06 Score=54.05 Aligned_cols=89 Identities=16% Similarity=0.125 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HH
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SA 76 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~ 76 (112)
...+..+...+.+.|++++|...+++... . .+.+...+..+...|.+.|++++|.+.| | ..
T Consensus 125 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 202 (243)
T 2q7f_A 125 GDLFYMLGTVLVKLEQPKLALPYLQRAVE-L-NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVT 202 (243)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH-h-CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 33444444444444444444444444432 1 1123344444444444444444444444 1 44
Q ss_pred HHhhCChhHHHHHHHHHHhcCCCCCcch
Q 033770 77 CKIHGAVKLSHEVGKRLLELQPEHCRRY 104 (112)
Q Consensus 77 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 104 (112)
+...|+.++|...+++..+..|+++..+
T Consensus 203 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 230 (243)
T 2q7f_A 203 YAYKENREKALEMLDKAIDIQPDHMLAL 230 (243)
T ss_dssp HHHTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHccCHHHHHHHHHHHHccCcchHHHH
Confidence 4455555555555555555555444433
No 25
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.42 E-value=4.6e-06 Score=50.87 Aligned_cols=95 Identities=12% Similarity=-0.020 Sum_probs=80.4
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H---
Q 033770 11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W--- 74 (112)
Q Consensus 11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~--- 74 (112)
+.+...+..+...+.+.|++++|...+++... . .+.+...+..+...|.+.|++++|.+.+ |
T Consensus 73 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 150 (186)
T 3as5_A 73 PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAE-A-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAI 150 (186)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-c-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHH
Confidence 34677888899999999999999999999885 2 3347788899999999999999999999 2
Q ss_pred -HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770 75 -SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL 107 (112)
Q Consensus 75 -~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l 107 (112)
..+...|+.++|...+++..+..|+++....++
T Consensus 151 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 184 (186)
T 3as5_A 151 AFSYEQMGRHEEALPHFKKANELDEGASVELALV 184 (186)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHCCCGGGGGS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCchhhHhhc
Confidence 778889999999999999998888776655443
No 26
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.42 E-value=5.4e-06 Score=53.56 Aligned_cols=96 Identities=15% Similarity=0.072 Sum_probs=81.0
Q ss_pred CCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H-
Q 033770 10 LRA-NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W- 74 (112)
Q Consensus 10 ~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~- 74 (112)
..| +...+..+-..+.+.|++++|...+++... .. +.+...+..+...|.+.|++++|.+.+ |
T Consensus 136 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 213 (252)
T 2ho1_A 136 LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR-LN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLL 213 (252)
T ss_dssp TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence 445 567788888999999999999999999885 32 236888999999999999999999999 2
Q ss_pred ---HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770 75 ---SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL 107 (112)
Q Consensus 75 ---~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l 107 (112)
..+...|+.++|.+.++++.+..|+++....++
T Consensus 214 ~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 214 LGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 677889999999999999999999877655443
No 27
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.40 E-value=2.7e-06 Score=54.82 Aligned_cols=97 Identities=18% Similarity=0.054 Sum_probs=80.2
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H--
Q 033770 11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W-- 74 (112)
Q Consensus 11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~-- 74 (112)
+++...+..+=..+.+.|++++|...+++..+ ..| +...+..+-..+.+.|++++|.+.| |
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALK---ENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 56777888888899999999999999999874 234 7788889999999999999999998 2
Q ss_pred --HHHHhh-----------CChhHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770 75 --SACKIH-----------GAVKLSHEVGKRLLELQPEHCRRYVVLSNV 110 (112)
Q Consensus 75 --~~~~~~-----------g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~ 110 (112)
..+... |+.++|...+++..+..|+++..+..+..+
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~ 127 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLV 127 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 667777 999999999999999999887766655443
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.39 E-value=1.4e-06 Score=59.44 Aligned_cols=85 Identities=14% Similarity=0.023 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S 75 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~ 75 (112)
+..++..+-..+.+.|++++|...+++... . -+.+..+|+.+...|.+.|++++|.+.| | .
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 289 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALT-V-RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGI 289 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 456666666666666777777777766654 1 1225566666666777777777776666 2 5
Q ss_pred HHHhhCChhHHHHHHHHHHhcCCC
Q 033770 76 ACKIHGAVKLSHEVGKRLLELQPE 99 (112)
Q Consensus 76 ~~~~~g~~~~a~~~~~~m~~~~~~ 99 (112)
.|...|+.++|...+++..+..|.
T Consensus 290 ~~~~~g~~~~A~~~~~~al~~~~~ 313 (365)
T 4eqf_A 290 SCINLGAYREAVSNFLTALSLQRK 313 (365)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcc
Confidence 566667777777777766655544
No 29
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.38 E-value=5.7e-06 Score=52.14 Aligned_cols=94 Identities=17% Similarity=0.129 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhc-CChhHHHHHH---------------H--
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRA-GLLSEANEFL---------------W-- 74 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~f---------------~-- 74 (112)
+...+..+-..+...|++++|...+++... . .+.+...+..+...|.+. |++++|.+.+ |
T Consensus 41 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~-~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 118 (225)
T 2vq2_A 41 NELAWLVRAEIYQYLKVNDKAQESFRQALS-I-KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLN 118 (225)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHH
T ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHHH-h-CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHH
Confidence 456666777777777777777777777664 2 123566677777777777 7777777776 1
Q ss_pred --HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770 75 --SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS 108 (112)
Q Consensus 75 --~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~ 108 (112)
..+...|+.++|...+++..+..|.++..+..+.
T Consensus 119 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 154 (225)
T 2vq2_A 119 KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELA 154 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 5666677777777777777776666555444443
No 30
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=1.3e-05 Score=47.44 Aligned_cols=94 Identities=11% Similarity=-0.063 Sum_probs=79.9
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC----HHHHHHHHHHHHhcCChhHHHHHH-------------H
Q 033770 12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPI----MEHYGCVVDLLGRAGLLSEANEFL-------------W 74 (112)
Q Consensus 12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~f-------------~ 74 (112)
.+...+..+-..+.+.|++++|...+++..+ ..|+ ...|..+-..|.+.|++++|.+.+ |
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 3677788888899999999999999999874 3465 678888899999999999999998 2
Q ss_pred ----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770 75 ----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS 108 (112)
Q Consensus 75 ----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~ 108 (112)
..+...|+.++|...+++..+..|.++.....+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR 140 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 7788899999999999999999998776555443
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.37 E-value=3.1e-06 Score=57.13 Aligned_cols=74 Identities=11% Similarity=0.037 Sum_probs=38.3
Q ss_pred cCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhH-HHH
Q 033770 27 ARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKL-SHE 88 (112)
Q Consensus 27 ~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~-a~~ 88 (112)
.|++++|..+|+++.. . .+.+...++.+-..|.+.|++++|.+.| | ..+...|+.++ +.+
T Consensus 179 ~~~~~eA~~~~~~~l~-~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~ 256 (291)
T 3mkr_A 179 GEKLQDAYYIFQEMAD-K-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNR 256 (291)
T ss_dssp TTHHHHHHHHHHHHHH-H-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHH-h-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 3555555555555553 1 2335555555555555555555555555 1 33444455543 345
Q ss_pred HHHHHHhcCCCCCc
Q 033770 89 VGKRLLELQPEHCR 102 (112)
Q Consensus 89 ~~~~m~~~~~~~~~ 102 (112)
.+++..+.+|+++.
T Consensus 257 ~~~~~~~~~P~~~~ 270 (291)
T 3mkr_A 257 YLSQLKDAHRSHPF 270 (291)
T ss_dssp HHHHHHHHCTTCHH
T ss_pred HHHHHHHhCCCChH
Confidence 55555555555543
No 32
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.32 E-value=3.7e-06 Score=57.07 Aligned_cols=86 Identities=13% Similarity=0.011 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S 75 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~ 75 (112)
+..++..+-..+.+.|++++|...+++... . -+.+...|..+...|.+.|++++|.+.| | .
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 293 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALS-V-RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGI 293 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 578899999999999999999999999875 2 2236788999999999999999999998 2 7
Q ss_pred HHHhhCChhHHHHHHHHHHhcCCCC
Q 033770 76 ACKIHGAVKLSHEVGKRLLELQPEH 100 (112)
Q Consensus 76 ~~~~~g~~~~a~~~~~~m~~~~~~~ 100 (112)
.+.+.|+.++|...+++..+..|.+
T Consensus 294 ~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 294 SCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 8888999999999999998877655
No 33
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.30 E-value=1.1e-05 Score=49.46 Aligned_cols=91 Identities=12% Similarity=0.014 Sum_probs=77.7
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----
Q 033770 12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W---- 74 (112)
Q Consensus 12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~---- 74 (112)
.+...+..+-..+.+.|++++|...|++... .. .-+...|..+-..|.+.|++++|.+.| |
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALS-IA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3566777888889999999999999999885 22 237888899999999999999999999 3
Q ss_pred HHHHhhCChhHHHHHHHHHHhcCCCCCcch
Q 033770 75 SACKIHGAVKLSHEVGKRLLELQPEHCRRY 104 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 104 (112)
..+...|+.++|...|++..++.|+++..+
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 116 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDA 116 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence 788899999999999999999889877643
No 34
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.28 E-value=1.3e-05 Score=48.84 Aligned_cols=93 Identities=9% Similarity=-0.104 Sum_probs=76.7
Q ss_pred CCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H-
Q 033770 10 LRA-NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W- 74 (112)
Q Consensus 10 ~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~- 74 (112)
+.| +...+..+-..+.+.|++++|...|++... .. +.+...|..+-..|.+.|++++|.+.| |
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 93 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV-LD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF 93 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH-cC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 345 445566677788899999999999999875 22 237788888989999999999999999 2
Q ss_pred ---HHHHhhCChhHHHHHHHHHHhcCCCCCcch
Q 033770 75 ---SACKIHGAVKLSHEVGKRLLELQPEHCRRY 104 (112)
Q Consensus 75 ---~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 104 (112)
.++...|+.++|...|+...+..|+++...
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 788899999999999999999888776653
No 35
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.27 E-value=1.7e-05 Score=50.81 Aligned_cols=90 Identities=8% Similarity=-0.044 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S 75 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~ 75 (112)
|...+...=..+.+.|++++|...|++... ..-.++...+.-+-..|.+.|++++|.+.| | .
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLK-LTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHh-ccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456777777788899999999999999886 444367777777999999999999999999 2 7
Q ss_pred HHHhhCChhHHHHHHHHHHhcCCCCCcc
Q 033770 76 ACKIHGAVKLSHEVGKRLLELQPEHCRR 103 (112)
Q Consensus 76 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 103 (112)
.+...|+.++|...+++..+..|.++..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~ 112 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATI 112 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHH
Confidence 8889999999999999999999988743
No 36
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.27 E-value=1.2e-05 Score=52.36 Aligned_cols=87 Identities=17% Similarity=0.088 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S 75 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~ 75 (112)
+..+|..+-..+...|++++|...|++... .. +.+...|..+-..|.+.|++++|.+.| | .
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 119 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALA-IR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI 119 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH-cC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHH
Confidence 567788888889999999999999999875 22 236788889999999999999999998 2 7
Q ss_pred HHHhhCChhHHHHHHHHHHhcCCCCC
Q 033770 76 ACKIHGAVKLSHEVGKRLLELQPEHC 101 (112)
Q Consensus 76 ~~~~~g~~~~a~~~~~~m~~~~~~~~ 101 (112)
.+...|+.++|...++++.+..|.++
T Consensus 120 ~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (275)
T 1xnf_A 120 ALYYGGRDKLAQDDLLAFYQDDPNDP 145 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCh
Confidence 77888999999999999888888765
No 37
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.27 E-value=6e-06 Score=54.85 Aligned_cols=87 Identities=7% Similarity=-0.060 Sum_probs=74.9
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H---
Q 033770 11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W--- 74 (112)
Q Consensus 11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~--- 74 (112)
+.+..++..+-..+.+.|++++|...+++... . .+.+...+..+...|.+.|++++|.+.| |
T Consensus 169 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 246 (327)
T 3cv0_A 169 PNDAQLHASLGVLYNLSNNYDSAAANLRRAVE-L-RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNM 246 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH-h-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34678888999999999999999999999885 2 2336788999999999999999999998 2
Q ss_pred -HHHHhhCChhHHHHHHHHHHhcCCC
Q 033770 75 -SACKIHGAVKLSHEVGKRLLELQPE 99 (112)
Q Consensus 75 -~~~~~~g~~~~a~~~~~~m~~~~~~ 99 (112)
..+...|+.++|.+.+++..+..|.
T Consensus 247 ~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 247 AVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 7888899999999999999887776
No 38
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.26 E-value=1.2e-05 Score=48.27 Aligned_cols=91 Identities=10% Similarity=-0.094 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HH
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SA 76 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~ 76 (112)
...+..+-..+.+.|++++|...|++... .. +.+...|..+-..|.+.|++++|.+.| | .+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCM-LD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHH-hC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 34455566778899999999999999875 22 237778888999999999999999999 2 78
Q ss_pred HHhhCChhHHHHHHHHHHhcCCCCCcchhh
Q 033770 77 CKIHGAVKLSHEVGKRLLELQPEHCRRYVV 106 (112)
Q Consensus 77 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 106 (112)
+...|+.++|.+.++...+..|.++....+
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 125 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPAHEAL 125 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHH
Confidence 889999999999999999888877765443
No 39
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.25 E-value=1.3e-05 Score=49.41 Aligned_cols=90 Identities=7% Similarity=-0.063 Sum_probs=75.4
Q ss_pred CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------
Q 033770 9 GLRAN-EVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL------------- 73 (112)
Q Consensus 9 g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f------------- 73 (112)
.+.|+ ...+..+=..+.+.|++++|...|++... . .| +...|..+=..|.+.|++++|.+.|
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~-~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~ 106 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI-Y--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTP 106 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHH
Confidence 34453 34566667788899999999999999885 2 34 7888899999999999999999999
Q ss_pred H----HHHHhhCChhHHHHHHHHHHhcCCCCC
Q 033770 74 W----SACKIHGAVKLSHEVGKRLLELQPEHC 101 (112)
Q Consensus 74 ~----~~~~~~g~~~~a~~~~~~m~~~~~~~~ 101 (112)
| .++...|+.++|...|++..+..|+.+
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 3 888999999999999999999888653
No 40
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.25 E-value=1.8e-05 Score=52.55 Aligned_cols=95 Identities=11% Similarity=0.047 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhcc-------CCCcCHHHHHHHHHHHHhcCChhHHHHHH------------
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEF-------EVVPIMEHYGCVVDLLGRAGLLSEANEFL------------ 73 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~-------g~~p~~~~~~~li~~~~~~g~~~~A~~~f------------ 73 (112)
+..++..+-..+.+.|++++|...+++..... ....+...+..+-..|.+.|++++|.+.|
T Consensus 192 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 271 (330)
T 3hym_B 192 DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNAS 271 (330)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSH
T ss_pred ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchH
Confidence 44555566666666666666666666555310 01223455666666666666666666665
Q ss_pred -H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770 74 -W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL 107 (112)
Q Consensus 74 -~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l 107 (112)
| ..+...|+.++|.+.+++..+..|+++..+..+
T Consensus 272 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 310 (330)
T 3hym_B 272 TYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTML 310 (330)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHH
Confidence 1 555556666666666666666666555444433
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.24 E-value=1e-05 Score=52.01 Aligned_cols=93 Identities=14% Similarity=0.067 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhccC------------------------CCc-CHHHHHHHHHHHHhcCChhH
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLGEFE------------------------VVP-IMEHYGCVVDLLGRAGLLSE 68 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g------------------------~~p-~~~~~~~li~~~~~~g~~~~ 68 (112)
..+|..+-..+.+.|++++|...+++... .. ..| +...+..+-..|.+.|++++
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLT-EHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHh-cCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHH
Confidence 35555666666666666666666666553 11 222 34445556666666666666
Q ss_pred HHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770 69 ANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL 107 (112)
Q Consensus 69 A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l 107 (112)
|.+.| | ..+...|++++|...+++..+..|+++..+..+
T Consensus 158 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 213 (258)
T 3uq3_A 158 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK 213 (258)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 66666 1 555566666666666666666666555544443
No 42
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.23 E-value=7.5e-06 Score=55.78 Aligned_cols=99 Identities=15% Similarity=0.044 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S 75 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~ 75 (112)
...++..+-..+.+.|++++|..+++++.....-.++...+..+...|.+.|++++|.+.| | .
T Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 255 (365)
T 4eqf_A 176 SPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGA 255 (365)
T ss_dssp -------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3456777888999999999999999999863222226889999999999999999999999 3 7
Q ss_pred HHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhccc
Q 033770 76 ACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNVH 111 (112)
Q Consensus 76 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~y 111 (112)
.+...|+.++|...+++..+..|+++..+..+..+|
T Consensus 256 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 256 TLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC 291 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 888999999999999999999998877666655443
No 43
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.23 E-value=2.3e-05 Score=43.92 Aligned_cols=87 Identities=14% Similarity=0.042 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH---------------H---
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL---------------W--- 74 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f---------------~--- 74 (112)
+...+..+-..+.+.|++++|...+++..+ .. ..+...|..+-..|.+.|++++|.+.| |
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQ-LD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHH-HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 445667777888999999999999999885 22 236778888999999999999999998 2
Q ss_pred -HHHHhh-CChhHHHHHHHHHHhcCCCCC
Q 033770 75 -SACKIH-GAVKLSHEVGKRLLELQPEHC 101 (112)
Q Consensus 75 -~~~~~~-g~~~~a~~~~~~m~~~~~~~~ 101 (112)
..+... |+.++|.+.++...+..|.++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 677888 999999999999998887654
No 44
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.21 E-value=9.7e-06 Score=49.42 Aligned_cols=94 Identities=11% Similarity=-0.036 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W----S 75 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~ 75 (112)
...+-.+=..|.+.|++++|...|++..+ +.| +...|..+-..|.+.|++++|.+.| | .
T Consensus 31 ~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 107 (150)
T 4ga2_A 31 SIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAE 107 (150)
T ss_dssp HTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34455667788999999999999999875 235 7888999999999999999999999 2 6
Q ss_pred HHHhhCChhHHHHH-HHHHHhcCCCCCcchhhhhcc
Q 033770 76 ACKIHGAVKLSHEV-GKRLLELQPEHCRRYVVLSNV 110 (112)
Q Consensus 76 ~~~~~g~~~~a~~~-~~~m~~~~~~~~~~~~~l~~~ 110 (112)
.+.+.|+.++|.+. +++..++.|.++..+.+...+
T Consensus 108 ~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~l 143 (150)
T 4ga2_A 108 LLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQL 143 (150)
T ss_dssp HHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 77888998776655 588889999998887765543
No 45
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.19 E-value=2e-05 Score=52.32 Aligned_cols=93 Identities=13% Similarity=-0.002 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHhccC-cHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----
Q 033770 13 NEVTFVAVLTACARAR-LVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W---- 74 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~-~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~---- 74 (112)
+...|..+-..+...| +.++|...+++... .. +.+...|..+...|.+.|++++|.+.| |
T Consensus 89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 166 (330)
T 3hym_B 89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATT-LE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIG 166 (330)
T ss_dssp STHHHHHHHHHHHHSCSCHHHHHHHHHHHHT-TC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-hC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 3445555555555666 56666666666553 11 124455566666666666666666665 1
Q ss_pred HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770 75 SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL 107 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l 107 (112)
..+...|+.++|.+.+++..+..|.++..+..+
T Consensus 167 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 199 (330)
T 3hym_B 167 LEYGLTNNSKLAERFFSQALSIAPEDPFVMHEV 199 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 455556666666666666666555554444333
No 46
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.17 E-value=1.5e-05 Score=46.58 Aligned_cols=90 Identities=7% Similarity=-0.155 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HH
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SA 76 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~ 76 (112)
...|..+=..+.+.|++++|...|++..+ .. +.+...|..+-..|.+.|++++|.+.| | ..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIK-RA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34566666778899999999999999875 22 236788999999999999999999999 2 78
Q ss_pred HHhhCChhHHHHHHHHHHhcC------CCCCcchh
Q 033770 77 CKIHGAVKLSHEVGKRLLELQ------PEHCRRYV 105 (112)
Q Consensus 77 ~~~~g~~~~a~~~~~~m~~~~------~~~~~~~~ 105 (112)
+...|+.++|...+++..+.. |.++....
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~ 116 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQ 116 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHH
Confidence 888999999999999999877 66554443
No 47
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.16 E-value=2.3e-05 Score=50.15 Aligned_cols=95 Identities=11% Similarity=0.024 Sum_probs=79.0
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-----------------
Q 033770 12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL----------------- 73 (112)
Q Consensus 12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f----------------- 73 (112)
+|...+..+-.++.+.|++++|...+++..+ ..| +...|..+-..|.+.|++++|.+.|
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 116 (228)
T 4i17_A 40 QDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLY 116 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 6777888888899999999999999999875 234 6778889999999999999999998
Q ss_pred ---H----HHHHhhCChhHHHHHHHHHHhcCCC--CCcchhhhhc
Q 033770 74 ---W----SACKIHGAVKLSHEVGKRLLELQPE--HCRRYVVLSN 109 (112)
Q Consensus 74 ---~----~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~l~~ 109 (112)
| ..+...|+.++|.+.+++..+..|+ ++..+..+..
T Consensus 117 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 117 AIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 2 5667789999999999999998887 6555544433
No 48
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.15 E-value=1.1e-05 Score=54.59 Aligned_cols=90 Identities=19% Similarity=0.082 Sum_probs=73.8
Q ss_pred HHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCCh
Q 033770 21 LTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAV 83 (112)
Q Consensus 21 i~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~ 83 (112)
+..+.+.|++++|...++++.....-.++..++..+...|.+.|++++|.+.| | ..+...|+.
T Consensus 188 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~ 267 (368)
T 1fch_A 188 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQS 267 (368)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCH
Confidence 44445889999999999999862212225889999999999999999999999 2 778889999
Q ss_pred hHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770 84 KLSHEVGKRLLELQPEHCRRYVVLSNV 110 (112)
Q Consensus 84 ~~a~~~~~~m~~~~~~~~~~~~~l~~~ 110 (112)
++|...+++..+..|.++..+..+..+
T Consensus 268 ~~A~~~~~~al~~~~~~~~~~~~l~~~ 294 (368)
T 1fch_A 268 EEAVAAYRRALELQPGYIRSRYNLGIS 294 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 999999999999999887766665544
No 49
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.15 E-value=1.5e-05 Score=51.11 Aligned_cols=94 Identities=6% Similarity=-0.146 Sum_probs=78.6
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S 75 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~ 75 (112)
+...+..+-..+.+.|++++|...+++... .. +.+...|..+...|.+.|++++|.+.| | .
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~ 215 (258)
T 3uq3_A 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIK-RA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 215 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 456777888899999999999999999985 22 347888999999999999999999999 2 7
Q ss_pred HHHhhCChhHHHHHHHHHHhcC------CCCCcchhhhh
Q 033770 76 ACKIHGAVKLSHEVGKRLLELQ------PEHCRRYVVLS 108 (112)
Q Consensus 76 ~~~~~g~~~~a~~~~~~m~~~~------~~~~~~~~~l~ 108 (112)
.+...|+.++|...+++..+.. |.+......|.
T Consensus 216 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 216 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 8889999999999999998877 76655555443
No 50
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.14 E-value=3.3e-05 Score=45.34 Aligned_cols=87 Identities=7% Similarity=-0.156 Sum_probs=74.8
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H---
Q 033770 11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W--- 74 (112)
Q Consensus 11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~--- 74 (112)
+.+...|..+-..+.+.|++++|...|.+... .. +.+...|..+-..|.+.|++++|.+.| |
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAIT-RN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh-hC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 34677888888999999999999999999875 22 236788899999999999999999999 3
Q ss_pred -HHHHhhCChhHHHHHHHHHHhcCCC
Q 033770 75 -SACKIHGAVKLSHEVGKRLLELQPE 99 (112)
Q Consensus 75 -~~~~~~g~~~~a~~~~~~m~~~~~~ 99 (112)
..+...|+.++|...+++..+..|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 7788899999999999999987765
No 51
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.13 E-value=2e-05 Score=55.96 Aligned_cols=95 Identities=8% Similarity=-0.035 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H---
Q 033770 11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W--- 74 (112)
Q Consensus 11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~--- 74 (112)
.|+..+|..+-..+.+.|++++|...+++... .. +.+...|..+...|.+.|++++|.+.| |
T Consensus 273 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 350 (537)
T 3fp2_A 273 HPTPNSYIFLALTLADKENSQEFFKFFQKAVD-LN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQL 350 (537)
T ss_dssp CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhc-cC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34455555555566666666666666666553 11 124555566666666666666666665 1
Q ss_pred -HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770 75 -SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL 107 (112)
Q Consensus 75 -~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l 107 (112)
..+...|+.++|...+++..+..|.++..+..+
T Consensus 351 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 384 (537)
T 3fp2_A 351 ACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFF 384 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 455555666666666666665555555444433
No 52
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.12 E-value=2.2e-05 Score=50.17 Aligned_cols=87 Identities=15% Similarity=0.143 Sum_probs=70.2
Q ss_pred HHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHH----------------HHHHHHhcCChhHHHHHH----------
Q 033770 21 LTACARARLVELGLELFHSLLGEFEVVP-IMEHYGC----------------VVDLLGRAGLLSEANEFL---------- 73 (112)
Q Consensus 21 i~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~----------------li~~~~~~g~~~~A~~~f---------- 73 (112)
-..+.+.|++++|...|++... ..| +...|.. +-..|.+.|++++|.+.|
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 87 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIA---LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNN 87 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH---HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHH---hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 3455688999999999999875 234 3445555 788899999999999999
Q ss_pred ---H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770 74 ---W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNV 110 (112)
Q Consensus 74 ---~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~ 110 (112)
| ..+...|+.++|...|++..+.+|+++..+..+..+
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 131 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNY 131 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 2 778889999999999999999999988776655443
No 53
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.10 E-value=6.8e-05 Score=45.07 Aligned_cols=88 Identities=9% Similarity=0.023 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHH
Q 033770 15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SAC 77 (112)
Q Consensus 15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~ 77 (112)
..+..+-..+...|++++|...+++... . -+.+...+..+-..|.+.|++++|.+.+ | ..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~-~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIE-L-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH-h-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4556666777788888888888888774 2 2236777888888888888888888888 2 667
Q ss_pred HhhCChhHHHHHHHHHHhcCCCCCcch
Q 033770 78 KIHGAVKLSHEVGKRLLELQPEHCRRY 104 (112)
Q Consensus 78 ~~~g~~~~a~~~~~~m~~~~~~~~~~~ 104 (112)
...|+.++|.+.+++..+..|.++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~ 118 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAK 118 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHH
Confidence 778888888888888888777765544
No 54
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.09 E-value=7.6e-05 Score=45.93 Aligned_cols=94 Identities=11% Similarity=0.112 Sum_probs=77.3
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHH-HHhcCCh--hHHHHHH-------------H-
Q 033770 12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDL-LGRAGLL--SEANEFL-------------W- 74 (112)
Q Consensus 12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~-~~~~g~~--~~A~~~f-------------~- 74 (112)
.+...|..+-..+...|++++|...+++... .. +.+...+..+-.. |.+.|++ ++|.+.| |
T Consensus 42 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~-p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 119 (177)
T 2e2e_A 42 QNSEQWALLGEYYLWQNDYSNSLLAYRQALQ-LR-GENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALM 119 (177)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HH-CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cC-CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHH
Confidence 4667888888999999999999999999875 22 2366777778788 7899998 9999998 2
Q ss_pred ---HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770 75 ---SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL 107 (112)
Q Consensus 75 ---~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l 107 (112)
..+...|+.+.|...+++..+..|+++....++
T Consensus 120 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 120 LLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 778889999999999999999899876654433
No 55
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.08 E-value=3.6e-05 Score=49.44 Aligned_cols=95 Identities=14% Similarity=0.015 Sum_probs=79.6
Q ss_pred CHHHHHHHHHHHhcc-----------CcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------
Q 033770 13 NEVTFVAVLTACARA-----------RLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL------- 73 (112)
Q Consensus 13 ~~~t~~~li~~~~~~-----------~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f------- 73 (112)
+...+..+-..+.+. |++++|...+++..+ ..| +...|..+=..|.+.|++++|.+.|
T Consensus 72 ~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 72 YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE 148 (217)
T ss_dssp CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence 556777888888888 999999999999875 235 6778888889999999999999998
Q ss_pred -----H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770 74 -----W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNV 110 (112)
Q Consensus 74 -----~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~ 110 (112)
| ..+...|+.++|...+++..+..|+++..+..+..+
T Consensus 149 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~ 194 (217)
T 2pl2_A 149 DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASA 194 (217)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 2 778899999999999999999999887766655443
No 56
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.07 E-value=5.8e-05 Score=53.14 Aligned_cols=85 Identities=12% Similarity=-0.059 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHH
Q 033770 15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SAC 77 (112)
Q Consensus 15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~ 77 (112)
..+-..=..+.+.|++++|...|+++.. .. ||...|..+...|.+.|++++|.+.| | ..+
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALE-LK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHH-HC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHh-cC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 4455666778899999999999999986 44 89999999999999999999999999 2 788
Q ss_pred HhhCChhHHHHHHHHHHhcCCCCCc
Q 033770 78 KIHGAVKLSHEVGKRLLELQPEHCR 102 (112)
Q Consensus 78 ~~~g~~~~a~~~~~~m~~~~~~~~~ 102 (112)
...|+.++|...|+++.+..|.+..
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~ 108 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDA 108 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGG
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccc
Confidence 8999999999999999987775543
No 57
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.06 E-value=2.7e-05 Score=59.01 Aligned_cols=92 Identities=14% Similarity=0.182 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W----S 75 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~ 75 (112)
..+|+.+=.++.+.|++++|...|++..+ +.| +...|+-+-..|.+.|++++|.+.| | .
T Consensus 43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~ 119 (723)
T 4gyw_A 43 AAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLAS 119 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44555555555666666666666665543 123 3455555556666666666666665 2 5
Q ss_pred HHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770 76 ACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS 108 (112)
Q Consensus 76 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~ 108 (112)
.+...|+.++|.+.+++..+++|+++..+.-|.
T Consensus 120 ~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~ 152 (723)
T 4gyw_A 120 IHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 152 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhh
Confidence 556666666676666666666666655554443
No 58
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.06 E-value=3.4e-05 Score=58.51 Aligned_cols=95 Identities=16% Similarity=0.204 Sum_probs=80.5
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W---- 74 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~---- 74 (112)
+..+|+.|=..+.+.|++++|...|++..+ +.| +...|+-+=..|.+.|++++|.+.| |
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~---l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE---VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 466788888899999999999999999875 245 5788889999999999999999998 3
Q ss_pred HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770 75 SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNV 110 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~ 110 (112)
..+...|+.++|.+.|++..+++|++...+..|..+
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~ 120 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASI 120 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 788889999999999999999999887776665544
No 59
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.06 E-value=2.2e-05 Score=51.08 Aligned_cols=89 Identities=9% Similarity=0.018 Sum_probs=52.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC--HHHHHHHHHHHHhcCChhHHHHHH-------------H----HH
Q 033770 16 TFVAVLTACARARLVELGLELFHSLLGEFEVVPI--MEHYGCVVDLLGRAGLLSEANEFL-------------W----SA 76 (112)
Q Consensus 16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~ 76 (112)
.+..+-..+.+.|++++|...+++... .+-.|+ ...|..+-..|.+.|++++|.+.| | ..
T Consensus 39 ~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 117 (272)
T 3u4t_A 39 IYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSY 117 (272)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 566666666666777777777666664 232222 223566666666667777776666 2 55
Q ss_pred HHhhCChhHHHHHHHHHHhcCCCCCcchh
Q 033770 77 CKIHGAVKLSHEVGKRLLELQPEHCRRYV 105 (112)
Q Consensus 77 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 105 (112)
+...|++++|...+++..+..|.++..+.
T Consensus 118 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 146 (272)
T 3u4t_A 118 FYNKGNFPLAIQYMEKQIRPTTTDPKVFY 146 (272)
T ss_dssp HHHTTCHHHHHHHHGGGCCSSCCCHHHHH
T ss_pred HHHccCHHHHHHHHHHHhhcCCCcHHHHH
Confidence 55666666666666666555555544443
No 60
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.05 E-value=5.1e-06 Score=50.67 Aligned_cols=85 Identities=12% Similarity=-0.001 Sum_probs=69.0
Q ss_pred HhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhH
Q 033770 24 CARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKL 85 (112)
Q Consensus 24 ~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~ 85 (112)
+...|++++|...++.... ..| +...+-.+=..|.+.|++++|.+.| | ..+...|++++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHH
Confidence 4466889999999988653 334 4455567888899999999999999 3 78889999999
Q ss_pred HHHHHHHHHhcCCCCCcchhhhhccc
Q 033770 86 SHEVGKRLLELQPEHCRRYVVLSNVH 111 (112)
Q Consensus 86 a~~~~~~m~~~~~~~~~~~~~l~~~y 111 (112)
|...|++..+.+|+++..+..+..+|
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~ 109 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELL 109 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999888777665543
No 61
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.03 E-value=5.3e-05 Score=52.04 Aligned_cols=95 Identities=12% Similarity=0.026 Sum_probs=79.1
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC----------------HHHHHHHHHHHHhcCChhHHHHHH---
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPI----------------MEHYGCVVDLLGRAGLLSEANEFL--- 73 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~----------------~~~~~~li~~~~~~g~~~~A~~~f--- 73 (112)
+...+..+=..+.+.|++++|...|++... . .|+ ...|.-+-..|.+.|++++|.+.|
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~-~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVS-W--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-H--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-H--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 355677777888999999999999999875 2 233 588899999999999999999999
Q ss_pred ----------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770 74 ----------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNV 110 (112)
Q Consensus 74 ----------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~ 110 (112)
| .++...|+.++|...|++..++.|.++..+..+..+
T Consensus 223 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 223 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC 273 (336)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 2 788899999999999999999999887766555443
No 62
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.03 E-value=4.9e-05 Score=49.44 Aligned_cols=94 Identities=9% Similarity=-0.046 Sum_probs=76.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH----------------H----H
Q 033770 16 TFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL----------------W----S 75 (112)
Q Consensus 16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f----------------~----~ 75 (112)
.+...-..+.+.|++++|...+++..+ . -+.+...+..+...|.+.|++++|.+.| | .
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~-~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEA-K-KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHH-T-TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH-h-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 344555677899999999999999885 2 2225558888889999999999999998 2 7
Q ss_pred HHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhccc
Q 033770 76 ACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNVH 111 (112)
Q Consensus 76 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~y 111 (112)
.+...|+.++|.+.+++..+..|.++..+..+..+|
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 118 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYF 118 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 788899999999999999999998887776665443
No 63
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.02 E-value=9.1e-05 Score=42.51 Aligned_cols=84 Identities=7% Similarity=-0.002 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH--------------------
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------------- 73 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------------- 73 (112)
...|..+-..+...|++++|...+++... .. +.+...+..+-..|.+.|++++|.+.+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKE-LD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 45677778888999999999999999885 32 347788889999999999999999988
Q ss_pred H----HHHHhhCChhHHHHHHHHHHhcCCC
Q 033770 74 W----SACKIHGAVKLSHEVGKRLLELQPE 99 (112)
Q Consensus 74 ~----~~~~~~g~~~~a~~~~~~m~~~~~~ 99 (112)
| ..+...|+.+.|.+.+++..+..|+
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 1 6677889999999999999987773
No 64
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.01 E-value=4.2e-05 Score=53.87 Aligned_cols=94 Identities=12% Similarity=0.028 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S 75 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~ 75 (112)
+..++..+-..+.+.|++++|...+++... .. |+...+..+...|.+.|++++|.+.+ | .
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 312 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIE-LF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQ 312 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHH-HC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHH
Confidence 345666677777777888888888777764 33 33666777777777777777777777 2 5
Q ss_pred HHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhc
Q 033770 76 ACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSN 109 (112)
Q Consensus 76 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~ 109 (112)
.+...|++++|...+++..+..|.++..+..+..
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 346 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELDPENIFPYIQLAC 346 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHH
Confidence 5666677777777777776666665554444433
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.00 E-value=4.5e-05 Score=47.13 Aligned_cols=88 Identities=11% Similarity=0.060 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S 75 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~ 75 (112)
+...+..+-..+...++.+.+...+.+... . .+-+...+..+-..|.+.|++++|.+.| | .
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~-~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~ 149 (184)
T 3vtx_A 72 SAEAYYILGSANFMIDEKQAAIDALQRAIA-L-NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGL 149 (184)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHH
Confidence 444555566667777888888888887764 2 2236778888999999999999999999 3 7
Q ss_pred HHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770 76 ACKIHGAVKLSHEVGKRLLELQPEHCR 102 (112)
Q Consensus 76 ~~~~~g~~~~a~~~~~~m~~~~~~~~~ 102 (112)
.+.+.|+.++|.+.|++..+.+|+++.
T Consensus 150 ~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 150 AYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 888999999999999999998887644
No 66
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.00 E-value=0.00012 Score=47.43 Aligned_cols=92 Identities=17% Similarity=0.005 Sum_probs=76.0
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH---------------H-
Q 033770 11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL---------------W- 74 (112)
Q Consensus 11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f---------------~- 74 (112)
+.+..+|..+-..+.+.|++++|...+++... . .+.+...+..+...|.+.|++++|.+.| |
T Consensus 74 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 151 (275)
T 1xnf_A 74 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE-L-DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWL 151 (275)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHh-c-CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 34678899999999999999999999999985 2 2236788999999999999999999999 2
Q ss_pred HHHHhhCChhHHHHHHHHHHhcCCCCCcch
Q 033770 75 SACKIHGAVKLSHEVGKRLLELQPEHCRRY 104 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 104 (112)
..+...|+.++|...+++.....|++...+
T Consensus 152 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 181 (275)
T 1xnf_A 152 YLAEQKLDEKQAKEVLKQHFEKSDKEQWGW 181 (275)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHSCCCSTHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCcchHHH
Confidence 445667899999999988887777655443
No 67
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.00 E-value=9.3e-05 Score=46.57 Aligned_cols=81 Identities=11% Similarity=-0.054 Sum_probs=69.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHH
Q 033770 16 TFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACK 78 (112)
Q Consensus 16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~ 78 (112)
.+..+-..+.+.|++++|...+++.. .|+...|..+-..|.+.|++++|.+.| | ..+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 34455567778999999999998764 468889999999999999999999999 2 7788
Q ss_pred hhCChhHHHHHHHHHHhcCCCCC
Q 033770 79 IHGAVKLSHEVGKRLLELQPEHC 101 (112)
Q Consensus 79 ~~g~~~~a~~~~~~m~~~~~~~~ 101 (112)
..|+.++|.+.+++..+..|.+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~ 105 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQ 105 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCS
T ss_pred HcccHHHHHHHHHHHHHhCCCcc
Confidence 89999999999999998777665
No 68
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.99 E-value=8.1e-05 Score=49.78 Aligned_cols=92 Identities=11% Similarity=-0.011 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc----CHHHHHHH------------HHHHHhcCChhHHHHHH---
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP----IMEHYGCV------------VDLLGRAGLLSEANEFL--- 73 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p----~~~~~~~l------------i~~~~~~g~~~~A~~~f--- 73 (112)
+...|..+-..+.+.|++++|...+++... ..| +...+..+ ...+.+.|++++|.+.+
T Consensus 70 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 146 (359)
T 3ieg_A 70 FTAARLQRGHLLLKQGKLDEAEDDFKKVLK---SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKI 146 (359)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 445555555556666666666666665543 122 22223222 34555566666666655
Q ss_pred ----------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770 74 ----------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL 107 (112)
Q Consensus 74 ----------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l 107 (112)
| ..+...|++++|...+++..+..|.++..+..+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 194 (359)
T 3ieg_A 147 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKI 194 (359)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 1 444555555566655555555555544444333
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=97.96 E-value=5.9e-05 Score=50.81 Aligned_cols=93 Identities=12% Similarity=0.041 Sum_probs=64.4
Q ss_pred CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC-HH-HHHHHHHHHHhcCChhHHHHHH-------------
Q 033770 10 LRAN-EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPI-ME-HYGCVVDLLGRAGLLSEANEFL------------- 73 (112)
Q Consensus 10 ~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~-~~-~~~~li~~~~~~g~~~~A~~~f------------- 73 (112)
+.|+ ...|..+...+.+.|++++|..+|++..+ +.|+ .. .|..+...+.+.|++++|.++|
T Consensus 94 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 170 (308)
T 2ond_A 94 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV 170 (308)
T ss_dssp TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHH
Confidence 3554 44778888888888888888888888764 3453 33 6888888888888888888887
Q ss_pred H--HHHH---hhCChhHHHHHHHHHHhcCCCCCcchh
Q 033770 74 W--SACK---IHGAVKLSHEVGKRLLELQPEHCRRYV 105 (112)
Q Consensus 74 ~--~~~~---~~g~~~~a~~~~~~m~~~~~~~~~~~~ 105 (112)
| .+.. ..|+.+.|..+|+...+..|+++..+.
T Consensus 171 ~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 207 (308)
T 2ond_A 171 YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVL 207 (308)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 2 2222 247777888888777776676655443
No 70
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.91 E-value=1.4e-06 Score=62.75 Aligned_cols=79 Identities=13% Similarity=0.117 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH------------------
Q 033770 12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL------------------ 73 (112)
Q Consensus 12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f------------------ 73 (112)
+|..+|..+++++.+.|++++|...++..++ . .+++.+.+.|+.+|++.|+++++.+++
T Consensus 59 ~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark--~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~ 135 (449)
T 1b89_A 59 DDPSSYMEVVQAANTSGNWEELVKYLQMARK--K-ARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDE 135 (449)
T ss_dssp -----------------------------------------------------CHHHHTTTTTCC---------------
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--h-CccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHc
Confidence 4556666666666666666666665554443 1 344555666666666666666665555
Q ss_pred ---------------H----HHHHhhCChhHHHHHHHHH
Q 033770 74 ---------------W----SACKIHGAVKLSHEVGKRL 93 (112)
Q Consensus 74 ---------------~----~~~~~~g~~~~a~~~~~~m 93 (112)
| .++.+.|+++.|.+.++++
T Consensus 136 g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 136 KMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp -CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHc
Confidence 3 6666677777777777665
No 71
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.91 E-value=0.00019 Score=45.04 Aligned_cols=94 Identities=9% Similarity=-0.022 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC--------------HHHHHHHHHHHHhcCChhHHHHHH-------
Q 033770 15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVPI--------------MEHYGCVVDLLGRAGLLSEANEFL------- 73 (112)
Q Consensus 15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~--------------~~~~~~li~~~~~~g~~~~A~~~f------- 73 (112)
..+..+=..+.+.|++++|...+.+......-.|+ ...|.-+-..|.+.|++++|.+.+
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34555666778899999999999998751111121 267888888999999999999998
Q ss_pred ------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770 74 ------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS 108 (112)
Q Consensus 74 ------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~ 108 (112)
| .++...|+.++|...|++..+..|.++.....+.
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 163 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE 163 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 2 7788899999999999999999998776555443
No 72
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.91 E-value=0.00014 Score=48.22 Aligned_cols=93 Identities=9% Similarity=-0.159 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S 75 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~ 75 (112)
+...+..+-..+.+.|++++|..+++++.+ . .+.+...+..+...|.+.|++++|.+.| | .
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQ-A-APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence 444566777888899999999999999985 2 2337888899999999999999999999 2 7
Q ss_pred HHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770 76 ACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL 107 (112)
Q Consensus 76 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l 107 (112)
.+...|+.++|.+.+++..+..|.....+..+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 129 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVN 129 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC----
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 78889999999999999998888776655443
No 73
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.91 E-value=0.00013 Score=53.02 Aligned_cols=89 Identities=17% Similarity=0.019 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W----S 75 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~ 75 (112)
...|..+-..+.+.|++++|...+++..+ ..| +...+..+-..|.+.|++++|.+.+ | .
T Consensus 23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 99 (568)
T 2vsy_A 23 FVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGH 99 (568)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 45555666666666666666666666553 123 4556666666666666666666666 1 5
Q ss_pred HHHhhCChhHHHHHHHHHHhcCCCCCcchh
Q 033770 76 ACKIHGAVKLSHEVGKRLLELQPEHCRRYV 105 (112)
Q Consensus 76 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 105 (112)
.+...|+.++|.+.+++..+..|+++..+.
T Consensus 100 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 129 (568)
T 2vsy_A 100 ALEDAGQAEAAAAAYTRAHQLLPEEPYITA 129 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 555566666666666666665665544333
No 74
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.90 E-value=2.6e-05 Score=50.56 Aligned_cols=84 Identities=15% Similarity=0.170 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhcc-----CCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEF-----EVVP-IMEHYGCVVDLLGRAGLLSEANEFL------------- 73 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~-----g~~p-~~~~~~~li~~~~~~g~~~~A~~~f------------- 73 (112)
+..++..+-..+...|++++|...+++..... +-.| ...++..+-..|.+.|++++|.+.|
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 46778889999999999999999999987521 2233 5678889999999999999999998
Q ss_pred --------H----HHHHhhCChhHHHHHHHHHHhc
Q 033770 74 --------W----SACKIHGAVKLSHEVGKRLLEL 96 (112)
Q Consensus 74 --------~----~~~~~~g~~~~a~~~~~~m~~~ 96 (112)
| ..+...|++++|...+++..+.
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 6778889999999999999864
No 75
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.90 E-value=0.00035 Score=43.89 Aligned_cols=90 Identities=9% Similarity=-0.114 Sum_probs=77.4
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH---------------
Q 033770 9 GLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL--------------- 73 (112)
Q Consensus 9 g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f--------------- 73 (112)
-+.|+...|..+-..+.+.|++++|...+++... .. +.+...|..+-..|.+.|++++|.+.|
T Consensus 32 a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 109 (213)
T 1hh8_A 32 VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN-RD-KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDY 109 (213)
T ss_dssp SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEEC
T ss_pred HcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHH
Confidence 3578889999999999999999999999999885 32 346788899999999999999999887
Q ss_pred --------------H----HHHHhhCChhHHHHHHHHHHhcCCCC
Q 033770 74 --------------W----SACKIHGAVKLSHEVGKRLLELQPEH 100 (112)
Q Consensus 74 --------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~ 100 (112)
| ..+...|+.++|.+.+++..+..|.+
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 110 KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp GGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 1 56778899999999999999887754
No 76
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.88 E-value=6e-05 Score=50.43 Aligned_cols=92 Identities=14% Similarity=0.004 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S 75 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~ 75 (112)
|...+..+-..+.+.|++++|...|++... . -+.+...+..+-..|.+.|++++|.+.| | .
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~-~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVD-G-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-h-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 455677788889999999999999999985 2 2236788999999999999999999999 2 7
Q ss_pred HHHhhCChhHHHHHHHHHHhcCC---CCCcchhh
Q 033770 76 ACKIHGAVKLSHEVGKRLLELQP---EHCRRYVV 106 (112)
Q Consensus 76 ~~~~~g~~~~a~~~~~~m~~~~~---~~~~~~~~ 106 (112)
.+...|+.++|...+++..+..| .++..+..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 113 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQ 113 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHH
Confidence 88889999999999999998888 55554433
No 77
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.88 E-value=5.8e-05 Score=54.41 Aligned_cols=100 Identities=12% Similarity=0.041 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhcc----------C----------CCcCHHHHHHHHHHHHhcCChhHHH
Q 033770 11 RANEVTFVAVLTACARARLVELGLELFHSLLGEF----------E----------VVPIMEHYGCVVDLLGRAGLLSEAN 70 (112)
Q Consensus 11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~----------g----------~~p~~~~~~~li~~~~~~g~~~~A~ 70 (112)
.||..+|+.+-..|...|.+++|...|..+.. . | -..++.+|..++.+|...|+++.|.
T Consensus 119 ~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n-~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~ 197 (449)
T 1b89_A 119 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-FGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQ 197 (449)
T ss_dssp CC----------------CTTTHHHHHHHTTC-HHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhh-HHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHH
Confidence 35556666666666666666666666654421 0 0 0013455555555555555555554
Q ss_pred HHH----------H---HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhccc
Q 033770 71 EFL----------W---SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNVH 111 (112)
Q Consensus 71 ~~f----------~---~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~y 111 (112)
... . ..|.+.|.+++|..+++...++++.....++-|..+|
T Consensus 198 ~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~ 251 (449)
T 1b89_A 198 MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILY 251 (449)
T ss_dssp HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 433 0 3566777888888888877776666655555554443
No 78
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.87 E-value=8.3e-05 Score=52.30 Aligned_cols=92 Identities=10% Similarity=0.020 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHhccCc-HHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H---
Q 033770 13 NEVTFVAVLTACARARL-VELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W--- 74 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~-~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~--- 74 (112)
+...|+.+=..+.+.|+ +++|+..+++... +.| +...|+-+-..|.+.|++++|.+.| |
T Consensus 130 ~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~---l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~l 206 (382)
T 2h6f_A 130 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIE---EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHR 206 (382)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcccCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHH
Confidence 34555555556666664 6666666666653 123 4556666666666666666666666 3
Q ss_pred -HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770 75 -SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL 107 (112)
Q Consensus 75 -~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l 107 (112)
..+...|++++|...++++.+.+|.+...+..+
T Consensus 207 g~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~l 240 (382)
T 2h6f_A 207 QWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQR 240 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 455566677777777777766666665554433
No 79
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.87 E-value=0.00016 Score=42.39 Aligned_cols=82 Identities=10% Similarity=-0.115 Sum_probs=65.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHH
Q 033770 17 FVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACK 78 (112)
Q Consensus 17 ~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~ 78 (112)
+-.+-..+.+.|++++|...+++..+ ..| +...|..+=..+.+.|++++|.+.| | ..+.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44455677889999999999999885 234 7788888889999999999999999 2 7788
Q ss_pred hhCChhHHHHHHHHHHhcCCCCC
Q 033770 79 IHGAVKLSHEVGKRLLELQPEHC 101 (112)
Q Consensus 79 ~~g~~~~a~~~~~~m~~~~~~~~ 101 (112)
..|+.++|...+++..+..|...
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 89999999999999998888643
No 80
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.84 E-value=8.5e-05 Score=52.73 Aligned_cols=84 Identities=13% Similarity=0.009 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S 75 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~ 75 (112)
+..+|..+-..+.+.|++++|...+++..+ .. +.+...|..+...|.+.|++++|.+.| | .
T Consensus 309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 386 (537)
T 3fp2_A 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQS-LN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAE 386 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 345555555556666666666666665553 11 113445555555666666666666655 1 4
Q ss_pred HHHhhCChhHHHHHHHHHHhcCC
Q 033770 76 ACKIHGAVKLSHEVGKRLLELQP 98 (112)
Q Consensus 76 ~~~~~g~~~~a~~~~~~m~~~~~ 98 (112)
.+...|+.++|.+.+++..+..|
T Consensus 387 ~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 387 ILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHcCC
Confidence 44455555555555555544333
No 81
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.84 E-value=5.5e-05 Score=54.25 Aligned_cols=91 Identities=7% Similarity=-0.080 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhc---------CChhHHHHHH-----------
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRA---------GLLSEANEFL----------- 73 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~---------g~~~~A~~~f----------- 73 (112)
...|..+=..+.+.|++++|...|++..+ ..|+...+..+-..|.+. |++++|.+.|
T Consensus 137 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 213 (474)
T 4abn_A 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDG 213 (474)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCH
Confidence 45555556666666666666666666543 235555555666666666 6666666665
Q ss_pred --H----HHHHhh--------CChhHHHHHHHHHHhcCC---CCCcchhhh
Q 033770 74 --W----SACKIH--------GAVKLSHEVGKRLLELQP---EHCRRYVVL 107 (112)
Q Consensus 74 --~----~~~~~~--------g~~~~a~~~~~~m~~~~~---~~~~~~~~l 107 (112)
| ..+... |+.++|...|++..+..| .++..+..+
T Consensus 214 ~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l 264 (474)
T 4abn_A 214 RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNR 264 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHH
Confidence 2 444444 556666666666666555 444444433
No 82
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.83 E-value=2e-05 Score=45.74 Aligned_cols=75 Identities=11% Similarity=0.064 Sum_probs=44.0
Q ss_pred cCcHHHHHHHHHHhhhccCC-Cc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHH
Q 033770 27 ARLVELGLELFHSLLGEFEV-VP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSH 87 (112)
Q Consensus 27 ~~~~~~a~~~~~~m~~~~g~-~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~ 87 (112)
.|++++|...|++... .+. .| +...+..+-..|.+.|++++|.+.| | .++...|+.++|.
T Consensus 3 ~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4566666666666653 221 12 4455566666667777777777766 1 5666677777777
Q ss_pred HHHHHHHhcCCCCCc
Q 033770 88 EVGKRLLELQPEHCR 102 (112)
Q Consensus 88 ~~~~~m~~~~~~~~~ 102 (112)
..+++..+..|+++.
T Consensus 82 ~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 82 ELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHCCCHH
T ss_pred HHHHHHHHhCCCcHH
Confidence 777777666665543
No 83
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.82 E-value=0.00031 Score=40.58 Aligned_cols=81 Identities=11% Similarity=-0.019 Sum_probs=65.1
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhccCCCcC-H---HHHHHHHHHHHhcCChhHHHHHH----------------H----H
Q 033770 20 VLTACARARLVELGLELFHSLLGEFEVVPI-M---EHYGCVVDLLGRAGLLSEANEFL----------------W----S 75 (112)
Q Consensus 20 li~~~~~~~~~~~a~~~~~~m~~~~g~~p~-~---~~~~~li~~~~~~g~~~~A~~~f----------------~----~ 75 (112)
+-..+.+.|++++|...|++.... . |+ . ..+..+-..|.+.|++++|.+.| | .
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~-~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL-Y--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-C--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH-C--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 345667889999999999998752 2 32 2 46777888899999999999998 1 6
Q ss_pred HHHhhCChhHHHHHHHHHHhcCCCCCcc
Q 033770 76 ACKIHGAVKLSHEVGKRLLELQPEHCRR 103 (112)
Q Consensus 76 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 103 (112)
.+...|+.++|...+++..+..|+++..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 7788899999999999999888876543
No 84
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.80 E-value=0.00068 Score=39.92 Aligned_cols=82 Identities=12% Similarity=0.092 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH--------------------
Q 033770 15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------------- 73 (112)
Q Consensus 15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------------- 73 (112)
.++..+=..+.+.|++++|+..|++... . .| +...|+-+=..|.+.|++++|.+.|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~-~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE-L--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 3455566778899999999999999875 2 34 6788888999999999999999998
Q ss_pred H----HHHHhhCChhHHHHHHHHHHhcCCC
Q 033770 74 W----SACKIHGAVKLSHEVGKRLLELQPE 99 (112)
Q Consensus 74 ~----~~~~~~g~~~~a~~~~~~m~~~~~~ 99 (112)
| ..+...|++++|.+.|++..+..|+
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 1 5567789999999999998876664
No 85
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.75 E-value=0.00028 Score=47.16 Aligned_cols=86 Identities=8% Similarity=-0.129 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W---- 74 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~---- 74 (112)
+...+..+-..+.+.|++++|...+++... . .| +...|..+-..|.+.|++++|.+.+ |
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT-R--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 456677777888899999999999999875 2 34 7788888999999999999999998 2
Q ss_pred HHHHhhCChhHHHHHHHHHHhcCCCCC
Q 033770 75 SACKIHGAVKLSHEVGKRLLELQPEHC 101 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~ 101 (112)
.++...|+.++|...+++..+..|+++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 778889999999999999988777654
No 86
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.75 E-value=0.00014 Score=51.15 Aligned_cols=92 Identities=11% Similarity=0.077 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCC-hhHHHHHH-------------H----
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGL-LSEANEFL-------------W---- 74 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~-~~~A~~~f-------------~---- 74 (112)
...|+.+-..+.+.|++++|+..+++... +.| +...|+.+-..|.+.|+ +++|.+.| |
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~---l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIE---LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHH---hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 45677777888899999999999999885 345 67888999999999997 99999999 4
Q ss_pred HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770 75 SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS 108 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~ 108 (112)
..+...|++++|...+++..+++|.+...+..+.
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg 207 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQ 207 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHH
Confidence 7788899999999999999999999877665443
No 87
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.71 E-value=0.00044 Score=49.43 Aligned_cols=94 Identities=9% Similarity=0.045 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC----------------HHHHHHHHHHHHhcCChhHHHHHH----
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPI----------------MEHYGCVVDLLGRAGLLSEANEFL---- 73 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~----------------~~~~~~li~~~~~~g~~~~A~~~f---- 73 (112)
...|..+=..+.+.|++++|...|++..+ . .|+ ...|.-+-.+|.+.|++++|.+.|
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~-~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVS-W--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH-H--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34566777788899999999999999875 2 232 578888999999999999999999
Q ss_pred ---------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770 74 ---------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNV 110 (112)
Q Consensus 74 ---------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~ 110 (112)
| .++...|++++|...|++..++.|.+...+..+..+
T Consensus 345 ~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 345 GLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMC 394 (457)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHH
T ss_pred hcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 2 888899999999999999999999888766655443
No 88
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.71 E-value=0.00016 Score=51.78 Aligned_cols=98 Identities=10% Similarity=-0.069 Sum_probs=82.2
Q ss_pred CCCCCHHHHHHHHHHHhcc---------CcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhc--------CChhHHHH
Q 033770 9 GLRANEVTFVAVLTACARA---------RLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRA--------GLLSEANE 71 (112)
Q Consensus 9 g~~p~~~t~~~li~~~~~~---------~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~--------g~~~~A~~ 71 (112)
.+.|+...+..+-..+.+. |++++|...+++..+ .. +-+...|..+-..|.+. |++++|.+
T Consensus 165 ~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~ 242 (474)
T 4abn_A 165 THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ-MD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALS 242 (474)
T ss_dssp TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 4568888888999999999 999999999999885 22 23688889999999998 99999999
Q ss_pred HH----------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770 72 FL----------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS 108 (112)
Q Consensus 72 ~f----------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~ 108 (112)
.| | ..+...|+.++|.+.|++..+..|+++..+..+.
T Consensus 243 ~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~ 299 (474)
T 4abn_A 243 AYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQ 299 (474)
T ss_dssp HHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 98 2 7788899999999999999999998876554443
No 89
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.70 E-value=0.00075 Score=49.04 Aligned_cols=93 Identities=8% Similarity=-0.115 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S 75 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~ 75 (112)
+...+..+-..+.+.|++++|...+++..+ .. .-+...+..+-..|.+.|++++|.+.+ | .
T Consensus 56 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 133 (568)
T 2vsy_A 56 HPEAVARLGRVRWTQQRHAEAAVLLQQASD-AA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLN 133 (568)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 567888888999999999999999999875 22 236788899999999999999999999 2 6
Q ss_pred HHHhh---CChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770 76 ACKIH---GAVKLSHEVGKRLLELQPEHCRRYVVL 107 (112)
Q Consensus 76 ~~~~~---g~~~~a~~~~~~m~~~~~~~~~~~~~l 107 (112)
.+... |+.++|.+.+++..+.+|.....+.++
T Consensus 134 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 168 (568)
T 2vsy_A 134 WRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFL 168 (568)
T ss_dssp HHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHT
T ss_pred HHHHhhccccHHHHHHHHHHHHhcCCcccChHHHh
Confidence 67777 999999999999999899877766554
No 90
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.67 E-value=0.00055 Score=45.81 Aligned_cols=57 Identities=12% Similarity=-0.071 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
.-.+..+-..+.+.|++++|...+++... ..| +...+..+-..|.+.|++++|.+.+
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~la~~~~~~g~~~~A~~~l 174 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQ---LSNQNGEIGLLLAETLIALNRSEDAEAVL 174 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HTTSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCcchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 34444555566677888888888877764 123 5566777777788888888887776
No 91
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.66 E-value=0.00014 Score=47.88 Aligned_cols=85 Identities=15% Similarity=0.155 Sum_probs=69.7
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhcc-----CCCc-CHHHHHHHHHHHHhcCChhHHHHHH------------
Q 033770 12 ANEVTFVAVLTACARARLVELGLELFHSLLGEF-----EVVP-IMEHYGCVVDLLGRAGLLSEANEFL------------ 73 (112)
Q Consensus 12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~-----g~~p-~~~~~~~li~~~~~~g~~~~A~~~f------------ 73 (112)
....++..+-..+...|++++|...+++..... +-.| ....+..+...|.+.|++++|.+.|
T Consensus 67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 146 (311)
T 3nf1_A 67 DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 146 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcC
Confidence 345678888899999999999999999987521 2223 5677889999999999999999998
Q ss_pred ---------H----HHHHhhCChhHHHHHHHHHHhc
Q 033770 74 ---------W----SACKIHGAVKLSHEVGKRLLEL 96 (112)
Q Consensus 74 ---------~----~~~~~~g~~~~a~~~~~~m~~~ 96 (112)
| ..+...|++++|.+.+++..+.
T Consensus 147 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 147 KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 6777889999999999999864
No 92
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.61 E-value=0.0002 Score=43.98 Aligned_cols=66 Identities=11% Similarity=0.096 Sum_probs=55.4
Q ss_pred CCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhh
Q 033770 45 EVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVV 106 (112)
Q Consensus 45 g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 106 (112)
.+.| +...+..+=..+.+.|++++|.+.| | .++...|++++|...|++..+++|+++..+.-
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 4556 5566777888899999999999999 4 78889999999999999999999999887765
Q ss_pred hhcc
Q 033770 107 LSNV 110 (112)
Q Consensus 107 l~~~ 110 (112)
+...
T Consensus 110 lg~~ 113 (151)
T 3gyz_A 110 TGQC 113 (151)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 93
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.59 E-value=0.00035 Score=42.41 Aligned_cols=86 Identities=16% Similarity=0.025 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhcc-------CC---------Cc-CHHHHHHHHHHHHhcCChhHHHHHH----
Q 033770 15 VTFVAVLTACARARLVELGLELFHSLLGEF-------EV---------VP-IMEHYGCVVDLLGRAGLLSEANEFL---- 73 (112)
Q Consensus 15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~-------g~---------~p-~~~~~~~li~~~~~~g~~~~A~~~f---- 73 (112)
..+...=..+.+.|++++|...|.+... . .- .| +...|.-+-.+|.+.|++++|.+.+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALT-RLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3455556677889999999999998775 2 00 22 3467788888999999999999998
Q ss_pred ---------H----HHHHhhCChhHHHHHHHHHHhcCCCCC
Q 033770 74 ---------W----SACKIHGAVKLSHEVGKRLLELQPEHC 101 (112)
Q Consensus 74 ---------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~ 101 (112)
| .++...|++++|...+++..++.|.++
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 2 788899999999999999999999876
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.56 E-value=0.0015 Score=42.53 Aligned_cols=92 Identities=7% Similarity=-0.109 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC-HHHHHHHHHHHHhcCChhHHHHHH----------------H-
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPI-MEHYGCVVDLLGRAGLLSEANEFL----------------W- 74 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~f----------------~- 74 (112)
+...+-.+-..+.+.|++++|...|++......-.|. ...+..+-..|.+.|++++|.+.| |
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 4455556666778899999999999999862211111 567788888999999999999999 1
Q ss_pred ---HHHHh--------hCChhHHHHHHHHHHhcCCCCCcch
Q 033770 75 ---SACKI--------HGAVKLSHEVGKRLLELQPEHCRRY 104 (112)
Q Consensus 75 ---~~~~~--------~g~~~~a~~~~~~m~~~~~~~~~~~ 104 (112)
.++.. .|+.++|...|++..+..|+++...
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 134 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVD 134 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHH
Confidence 55556 8999999999999999889876544
No 95
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.50 E-value=0.00068 Score=48.80 Aligned_cols=82 Identities=11% Similarity=0.074 Sum_probs=65.2
Q ss_pred HHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChh
Q 033770 23 ACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVK 84 (112)
Q Consensus 23 ~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~ 84 (112)
.+.+.|++++|...+++..+ . .| +...|..+-..|.+.|++++|.+.+ | .++...|+.+
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~-~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIE-L--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHH-h--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 34577889999999988875 2 34 5778888888899999999999888 2 7778889999
Q ss_pred HHHHHHHHHHhcCCCCCcchhhh
Q 033770 85 LSHEVGKRLLELQPEHCRRYVVL 107 (112)
Q Consensus 85 ~a~~~~~~m~~~~~~~~~~~~~l 107 (112)
+|.+.+++..+..|.++..+..+
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l 114 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKY 114 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999888888776655444
No 96
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.49 E-value=0.00058 Score=44.78 Aligned_cols=84 Identities=17% Similarity=0.133 Sum_probs=70.5
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhcc-------CCCcCHHHHHHHHHHHHhcCChhHHHHHH-----------
Q 033770 12 ANEVTFVAVLTACARARLVELGLELFHSLLGEF-------EVVPIMEHYGCVVDLLGRAGLLSEANEFL----------- 73 (112)
Q Consensus 12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~-------g~~p~~~~~~~li~~~~~~g~~~~A~~~f----------- 73 (112)
.+..++..+-..+...|++++|..++++... . .-......+..+-..|...|++++|.+.+
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALE-DLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 3567788899999999999999999999875 2 23335677889999999999999999998
Q ss_pred ----------H----HHHHhhCChhHHHHHHHHHHhc
Q 033770 74 ----------W----SACKIHGAVKLSHEVGKRLLEL 96 (112)
Q Consensus 74 ----------~----~~~~~~g~~~~a~~~~~~m~~~ 96 (112)
| ..+...|+.++|.+.+++..+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 140 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 140 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 1 6778889999999999998864
No 97
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.47 E-value=0.00012 Score=45.07 Aligned_cols=85 Identities=9% Similarity=0.022 Sum_probs=63.8
Q ss_pred HhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HH-HHhhCCh--
Q 033770 24 CARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SA-CKIHGAV-- 83 (112)
Q Consensus 24 ~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~-~~~~g~~-- 83 (112)
+...|++++|...+++... . -+.+...|..+-..|.+.|++++|.+.| | .. +...|+.
T Consensus 20 ~~~~~~~~~A~~~~~~al~-~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIR-A-NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHH-H-CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHH-h-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 3467888899999988775 2 2237788999999999999999999999 2 44 5578898
Q ss_pred hHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770 84 KLSHEVGKRLLELQPEHCRRYVVLSNV 110 (112)
Q Consensus 84 ~~a~~~~~~m~~~~~~~~~~~~~l~~~ 110 (112)
++|...+++..+..|.++..+..+..+
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~ 124 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASD 124 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 999999999999999887766555443
No 98
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=97.46 E-value=0.002 Score=43.22 Aligned_cols=91 Identities=8% Similarity=0.041 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHHh-------ccCcH-------HHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH---
Q 033770 12 ANEVTFVAVLTACA-------RARLV-------ELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL--- 73 (112)
Q Consensus 12 p~~~t~~~li~~~~-------~~~~~-------~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f--- 73 (112)
-+...|..+...+. +.|++ ++|..+|++..+ .+.| +...|..+...+.+.|++++|.++|
T Consensus 48 ~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~--~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 125 (308)
T 2ond_A 48 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS--TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL 125 (308)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHT--TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHH--HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 35556666666654 34775 899999999874 3556 5668999999999999999999998
Q ss_pred -----------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcch
Q 033770 74 -----------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRY 104 (112)
Q Consensus 74 -----------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 104 (112)
| ..+.+.|+.++|..+|++..+..|.....+
T Consensus 126 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 171 (308)
T 2ond_A 126 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY 171 (308)
T ss_dssp HTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHH
T ss_pred HhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHH
Confidence 4 566778999999999999998888665444
No 99
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.46 E-value=0.00063 Score=48.97 Aligned_cols=90 Identities=12% Similarity=0.040 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC-H-HHHHHHHHHHHhcCChhHHHHHH-------------H--H
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPI-M-EHYGCVVDLLGRAGLLSEANEFL-------------W--S 75 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~-~-~~~~~li~~~~~~g~~~~A~~~f-------------~--~ 75 (112)
+...|..+...+.+.|++++|..++++... +.|+ . ..|......+.+.|++++|.++| | .
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~ 396 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA 396 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHH
Confidence 466777777777777888888888877764 2343 2 46777777777777777777777 1 1
Q ss_pred H---HHhhCChhHHHHHHHHHHhcCCCCCcchh
Q 033770 76 A---CKIHGAVKLSHEVGKRLLELQPEHCRRYV 105 (112)
Q Consensus 76 ~---~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 105 (112)
+ +...|+.++|..+|+...+..|+++..+.
T Consensus 397 a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~ 429 (530)
T 2ooe_A 397 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVL 429 (530)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHH
Confidence 1 22467777777777777666666554443
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.42 E-value=0.0012 Score=49.51 Aligned_cols=85 Identities=14% Similarity=-0.012 Sum_probs=62.4
Q ss_pred hccCcHHHHHHHHHHhhh-----ccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhC
Q 033770 25 ARARLVELGLELFHSLLG-----EFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHG 81 (112)
Q Consensus 25 ~~~~~~~~a~~~~~~m~~-----~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g 81 (112)
...|+.++|...+++... .....| +...+..+-..|.+.|++++|.+.| | ..+...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 677888888888888761 002223 5667777888888888888888888 2 6677888
Q ss_pred ChhHHHHHHHHHHhcCCCCCcchhhhhc
Q 033770 82 AVKLSHEVGKRLLELQPEHCRRYVVLSN 109 (112)
Q Consensus 82 ~~~~a~~~~~~m~~~~~~~~~~~~~l~~ 109 (112)
++++|.+.|++..+.+|+++..+..+..
T Consensus 482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~ 509 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTFPGELAPKLALAA 509 (681)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 8888888888888888887776655543
No 101
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.40 E-value=0.00068 Score=46.56 Aligned_cols=92 Identities=9% Similarity=-0.081 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHH------------------HHHHHHHHHHhcCChhHHHHHH---
Q 033770 15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVPIME------------------HYGCVVDLLGRAGLLSEANEFL--- 73 (112)
Q Consensus 15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~------------------~~~~li~~~~~~g~~~~A~~~f--- 73 (112)
..+..+=..+.+.|++++|...|++... +.|+.. .|.-+-..|.+.|++++|.+.+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA---YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH---HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH---HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455566677788999999999988764 234433 6777888889999999999988
Q ss_pred ----------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhc
Q 033770 74 ----------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSN 109 (112)
Q Consensus 74 ----------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~ 109 (112)
| .++...|++++|...|++..++.|.++..+..|..
T Consensus 257 l~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~ 306 (338)
T 2if4_A 257 LTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRA 306 (338)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 2 77888899999999999988888877665555443
No 102
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.39 E-value=0.00088 Score=46.74 Aligned_cols=93 Identities=10% Similarity=-0.003 Sum_probs=74.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhcc-------------CCCc-CHHHHHHHHHHHHhcCChhHHHHHH--------
Q 033770 16 TFVAVLTACARARLVELGLELFHSLLGEF-------------EVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------- 73 (112)
Q Consensus 16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~-------------g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------- 73 (112)
.+..+=..+.+.|++++|...+++..+.. ...| +...|.-+-..|.+.|++++|.+.+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 45666677889999999999998877400 0233 5677888889999999999999999
Q ss_pred -----H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770 74 -----W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS 108 (112)
Q Consensus 74 -----~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~ 108 (112)
| .++...|+.++|.+.+++..++.|.++.....+.
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~ 348 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL 348 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 2 7888999999999999999999998766555443
No 103
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.38 E-value=0.0031 Score=37.53 Aligned_cols=82 Identities=10% Similarity=-0.083 Sum_probs=68.1
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----
Q 033770 12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W---- 74 (112)
Q Consensus 12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~---- 74 (112)
.+..++..+-..+.+.|++++|...+++... . -+.+...|..+-..|.+.|++++|.+.| |
T Consensus 45 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 122 (166)
T 1a17_A 45 SNAIYYGNRSLAYLRTECYGYALGDATRAIE-L-DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 122 (166)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3677888888899999999999999999885 2 2346788889999999999999999999 2
Q ss_pred --HHHHhhCChhHHHHHHHHHHh
Q 033770 75 --SACKIHGAVKLSHEVGKRLLE 95 (112)
Q Consensus 75 --~~~~~~g~~~~a~~~~~~m~~ 95 (112)
..+...|+.++|.+.+.....
T Consensus 123 ~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 123 ECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccchHH
Confidence 335667899999999988764
No 104
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.37 E-value=0.0023 Score=46.01 Aligned_cols=90 Identities=10% Similarity=0.035 Sum_probs=65.3
Q ss_pred CCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHH--HHHHHHHhcCChhHHHHHH------------
Q 033770 10 LRANE--VTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYG--CVVDLLGRAGLLSEANEFL------------ 73 (112)
Q Consensus 10 ~~p~~--~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~--~li~~~~~~g~~~~A~~~f------------ 73 (112)
+.|+. ..|........+.|++++|..+|++..+. . ..+...|- +++. +...|+.++|.++|
T Consensus 350 ~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-~-~~~~~~~~~~a~~~-~~~~~~~~~A~~~~e~al~~~p~~~~ 426 (530)
T 2ooe_A 350 IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-A-RTRHHVYVTAALME-YYCSKDKSVAFKIFELGLKKYGDIPE 426 (530)
T ss_dssp SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-T-TCCTHHHHHHHHHH-HHHTCCHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-c-CCchHHHHHHHHHH-HHHcCChhHHHHHHHHHHHHCCCCHH
Confidence 45653 47888888888999999999999998752 1 11233332 2332 34689999999998
Q ss_pred -H----HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770 74 -W----SACKIHGAVKLSHEVGKRLLELQPEHCR 102 (112)
Q Consensus 74 -~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 102 (112)
| ....+.|+.++|..+|+......|.++.
T Consensus 427 ~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 427 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred HHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 4 5556789999999999999886665543
No 105
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.37 E-value=0.0025 Score=40.98 Aligned_cols=83 Identities=12% Similarity=0.071 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhcc------CC-CcCHHHHHHHHHHHHhcCChhHHHHHH------------
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEF------EV-VPIMEHYGCVVDLLGRAGLLSEANEFL------------ 73 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~------g~-~p~~~~~~~li~~~~~~g~~~~A~~~f------------ 73 (112)
...++..+-..+...|++++|...+++... . .- ......+..+-..|.+.|++++|.+.|
T Consensus 84 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 162 (283)
T 3edt_B 84 VAATLNNLAVLYGKRGKYKEAEPLCKRALE-IREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG 162 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 456788899999999999999999999875 2 11 235677889999999999999999998
Q ss_pred ---------H----HHHHhhCChhHHHHHHHHHHhc
Q 033770 74 ---------W----SACKIHGAVKLSHEVGKRLLEL 96 (112)
Q Consensus 74 ---------~----~~~~~~g~~~~a~~~~~~m~~~ 96 (112)
| ..+...|+.++|...+++..+.
T Consensus 163 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 163 PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 7788899999999999999864
No 106
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.34 E-value=0.00067 Score=41.05 Aligned_cols=65 Identities=9% Similarity=0.032 Sum_probs=54.0
Q ss_pred CCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770 46 VVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL 107 (112)
Q Consensus 46 ~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l 107 (112)
+.| +...+..+-..+.+.|++++|.+.| | .++...|++++|...+++..+..|+++..+..+
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 345 5666777888899999999999999 3 778899999999999999999999988776655
Q ss_pred hcc
Q 033770 108 SNV 110 (112)
Q Consensus 108 ~~~ 110 (112)
..+
T Consensus 96 g~~ 98 (148)
T 2vgx_A 96 AEC 98 (148)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 107
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.31 E-value=0.0018 Score=36.44 Aligned_cols=61 Identities=15% Similarity=0.110 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
+.+..++..+...+.+.|++++|..+++++.. . .+.+..++..+...|.+.|++++|.+.|
T Consensus 40 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~la~~~~~~~~~~~A~~~~ 100 (125)
T 1na0_A 40 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE-L-DPNNAEAWYNLGNAYYKQGDYDEAIEYY 100 (125)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-h-CCccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 34677888999999999999999999999885 3 2347788999999999999999999997
No 108
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.30 E-value=0.0049 Score=39.39 Aligned_cols=89 Identities=8% Similarity=-0.062 Sum_probs=66.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC-HHHHHHHHHHHHhcCChhHHHHHH----------------H----
Q 033770 16 TFVAVLTACARARLVELGLELFHSLLGEFEVVPI-MEHYGCVVDLLGRAGLLSEANEFL----------------W---- 74 (112)
Q Consensus 16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~f----------------~---- 74 (112)
.+-.+-..+.+.|++++|...|+++.....-.|. ...+..+-..|.+.|++++|.+.| |
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 3444556678889999999999999863222222 356777889999999999999999 1
Q ss_pred HHHH------------------hhCChhHHHHHHHHHHhcCCCCCcch
Q 033770 75 SACK------------------IHGAVKLSHEVGKRLLELQPEHCRRY 104 (112)
Q Consensus 75 ~~~~------------------~~g~~~~a~~~~~~m~~~~~~~~~~~ 104 (112)
.++. ..|+.++|...|+++.+..|+++...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~ 133 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTT 133 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHH
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 2222 24689999999999999889876543
No 109
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.27 E-value=0.00091 Score=36.09 Aligned_cols=58 Identities=14% Similarity=0.138 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHH
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEF 72 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 72 (112)
+...+..+-..+.+.|++++|...+++... .. +.+...+..+-..|.+.|++++|.+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 65 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALE-LD-PNNAEAWYNLGNAYYKQGDYDEAIEY 65 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHh-cC-CCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence 345666677778888899999988888775 22 12444444444445444444444444
No 110
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.25 E-value=0.0022 Score=44.90 Aligned_cols=96 Identities=13% Similarity=-0.028 Sum_probs=70.7
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhh----ccC--CCc-CHHHHHHHHHHHHhcCChhHHHHHH-----------
Q 033770 12 ANEVTFVAVLTACARARLVELGLELFHSLLG----EFE--VVP-IMEHYGCVVDLLGRAGLLSEANEFL----------- 73 (112)
Q Consensus 12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~----~~g--~~p-~~~~~~~li~~~~~~g~~~~A~~~f----------- 73 (112)
.-...||.|=..+...|+.++|++.|++... ..+ ..| ...+|+-+-..|.+.|++++|.+.+
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 3456788887888889999999999987542 011 123 4678888999999999999999887
Q ss_pred ----------H----HHHHh--hCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770 74 ----------W----SACKI--HGAVKLSHEVGKRLLELQPEHCRRYVVL 107 (112)
Q Consensus 74 ----------~----~~~~~--~g~~~~a~~~~~~m~~~~~~~~~~~~~l 107 (112)
+ .++.. .++.++|.+.|++..+.+|+++..+..+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~ 178 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGL 178 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 1 12222 2468999999999999999887655433
No 111
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.25 E-value=0.001 Score=39.58 Aligned_cols=65 Identities=9% Similarity=-0.026 Sum_probs=52.8
Q ss_pred CCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770 46 VVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL 107 (112)
Q Consensus 46 ~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l 107 (112)
..| +...+..+-..+.+.|++++|.+.| | ..+...|+.++|...++...+.+|+++..+..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 344 4455666777889999999999999 3 778899999999999999999999988876655
Q ss_pred hcc
Q 033770 108 SNV 110 (112)
Q Consensus 108 ~~~ 110 (112)
..+
T Consensus 93 g~~ 95 (142)
T 2xcb_A 93 AEC 95 (142)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 112
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.21 E-value=0.00076 Score=50.51 Aligned_cols=92 Identities=10% Similarity=-0.078 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W---- 74 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~---- 74 (112)
+...+..+-.++.+.|++++|...+++..+ . .| +...|..+=..|.+.|++++|.+.| |
T Consensus 432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg 508 (681)
T 2pzi_A 432 SVELPLMEVRALLDLGDVAKATRKLDDLAE-R--VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALA 508 (681)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHH-H--HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHH
T ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhc-c--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 456677777788888999999999888875 1 24 6677777888888889999998888 2
Q ss_pred HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770 75 SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS 108 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~ 108 (112)
..+.+.|+.++ .+.+++..+.+|+++..+..+.
T Consensus 509 ~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg 541 (681)
T 2pzi_A 509 ATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLA 541 (681)
T ss_dssp HHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHH
Confidence 66677788888 8888888777777766555443
No 113
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.19 E-value=0.01 Score=38.60 Aligned_cols=15 Identities=7% Similarity=-0.172 Sum_probs=6.1
Q ss_pred hCChhHHHHHHHHHH
Q 033770 80 HGAVKLSHEVGKRLL 94 (112)
Q Consensus 80 ~g~~~~a~~~~~~m~ 94 (112)
.++.++|...+++..
T Consensus 199 ~~~~~~A~~~~~~a~ 213 (273)
T 1ouv_A 199 TKNFKEALARYSKAC 213 (273)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHH
Confidence 334444444444333
No 114
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.12 E-value=0.0051 Score=40.30 Aligned_cols=82 Identities=11% Similarity=0.026 Sum_probs=50.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhc---cCCCc-CHHHHHHHHHHHHhcCChhHHHHHH------------------
Q 033770 16 TFVAVLTACARARLVELGLELFHSLLGE---FEVVP-IMEHYGCVVDLLGRAGLLSEANEFL------------------ 73 (112)
Q Consensus 16 t~~~li~~~~~~~~~~~a~~~~~~m~~~---~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f------------------ 73 (112)
++..+-..+...|++++|...+++.... .+-.+ ...++..+-..|.+.|++++|.+.+
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 5566666667777777777777665431 11111 1445566666777777777777766
Q ss_pred -H----HHHHhhCChhHHHHHHHHHHhcC
Q 033770 74 -W----SACKIHGAVKLSHEVGKRLLELQ 97 (112)
Q Consensus 74 -~----~~~~~~g~~~~a~~~~~~m~~~~ 97 (112)
| ..+...|+.++|...+++..+..
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 1 55666677777777777766543
No 115
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.10 E-value=0.0021 Score=37.37 Aligned_cols=63 Identities=14% Similarity=0.050 Sum_probs=53.5
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770 48 PIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNV 110 (112)
Q Consensus 48 p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~ 110 (112)
.+...+..+-..+.+.|++++|.+.| | ..+...|++++|...+++..+..|.++..+..+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 46788889999999999999999999 3 777889999999999999999999887766655443
No 116
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.08 E-value=0.0067 Score=38.37 Aligned_cols=51 Identities=14% Similarity=0.169 Sum_probs=43.1
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 20 VLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 20 li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
+=..+.+.|++++|...+++..+ . .| +...+..+-..|.+.|++++|.+.|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~-~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 111 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQ-K--APNNVDCLEACAEMQVCRGQEKDALRMY 111 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH-H--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 67778889999999999998875 2 34 6788888999999999999999998
No 117
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.07 E-value=0.0037 Score=44.66 Aligned_cols=89 Identities=13% Similarity=0.069 Sum_probs=68.4
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhhc--cCCCc----CHHHHHHHHHHHHhcCChhHHHHHH-------------------
Q 033770 19 AVLTACARARLVELGLELFHSLLGE--FEVVP----IMEHYGCVVDLLGRAGLLSEANEFL------------------- 73 (112)
Q Consensus 19 ~li~~~~~~~~~~~a~~~~~~m~~~--~g~~p----~~~~~~~li~~~~~~g~~~~A~~~f------------------- 73 (112)
..+..+.+.|++++|+.++++.... .-+.| ...+++.|...|...|++++|++++
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 3455666789999999999887631 11222 3457889999999999999999998
Q ss_pred --H----HHHHhhCChhHHHHHHHHHHh-----cCCCCCcchhhh
Q 033770 74 --W----SACKIHGAVKLSHEVGKRLLE-----LQPEHCRRYVVL 107 (112)
Q Consensus 74 --~----~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~l 107 (112)
+ ..|...|+.++|+.++++..+ .+|++|.+-.++
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 416 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI 416 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 1 778889999999999998874 678777655544
No 118
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.07 E-value=0.016 Score=37.63 Aligned_cols=54 Identities=4% Similarity=-0.008 Sum_probs=27.2
Q ss_pred HHHHHHHHHhc----cCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHh----cCChhHHHHHH
Q 033770 16 TFVAVLTACAR----ARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGR----AGLLSEANEFL 73 (112)
Q Consensus 16 t~~~li~~~~~----~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~f 73 (112)
++..+=..+.+ .++.++|...|++... .+ +...+..+-..|.+ .|++++|.+.|
T Consensus 40 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~ 101 (273)
T 1ouv_A 40 GCFNLGVLYYQGQGVEKNLKKAASFYAKACD-LN---YSNGCHLLGNLYYSGQGVSQNTNKALQYY 101 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHhCCCCcccCHHHHHHHH
Confidence 34444444444 5555555555555543 33 34444445555555 55555555555
No 119
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.03 E-value=0.0019 Score=36.99 Aligned_cols=64 Identities=9% Similarity=0.028 Sum_probs=53.3
Q ss_pred CCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770 46 VVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS 108 (112)
Q Consensus 46 ~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~ 108 (112)
...+...+..+-..+.+.|++++|.+.| | ..+...|+.++|...+++..+..|.++..+..+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 3457788889999999999999999999 2 6778889999999999999998888766655544
Q ss_pred c
Q 033770 109 N 109 (112)
Q Consensus 109 ~ 109 (112)
.
T Consensus 92 ~ 92 (133)
T 2lni_A 92 A 92 (133)
T ss_dssp H
T ss_pred H
Confidence 3
No 120
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.02 E-value=0.018 Score=39.56 Aligned_cols=87 Identities=11% Similarity=-0.029 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCC-cCHHHHHHHHHHHHhcCChhHHHHHH-----------H----
Q 033770 11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVV-PIMEHYGCVVDLLGRAGLLSEANEFL-----------W---- 74 (112)
Q Consensus 11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~f-----------~---- 74 (112)
.++..++..+-.++...|++++|++++.+-.. .|-. -+...+-.++..|.+.|+.+.|.+.+ |
T Consensus 97 ~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~-~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~ 175 (310)
T 3mv2_B 97 QNSPYELYLLATAQAILGDLDKSLETCVEGID-NDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNE 175 (310)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT-SSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhc-cCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchH
Confidence 45666666777888888888888888887653 3321 26677778888888888888888888 3
Q ss_pred ------HH--HHhhC--ChhHHHHHHHHHHhcCC
Q 033770 75 ------SA--CKIHG--AVKLSHEVGKRLLELQP 98 (112)
Q Consensus 75 ------~~--~~~~g--~~~~a~~~~~~m~~~~~ 98 (112)
.+ ....| +...|..+|+++.+..|
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p 209 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELSQTFP 209 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCC
Confidence 22 12223 78888888888766444
No 121
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.02 E-value=0.0016 Score=39.46 Aligned_cols=62 Identities=11% Similarity=0.040 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770 49 IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNV 110 (112)
Q Consensus 49 ~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~ 110 (112)
+...+..+-..|.+.|++++|.+.| | ..+...|++++|...+++..+..|.++..+..+..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 5677888888999999999999999 3 778899999999999999999999887766655443
No 122
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.01 E-value=0.011 Score=39.35 Aligned_cols=89 Identities=7% Similarity=-0.016 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhc---cCCCc-CHHHHHHHHHHHHhc-CChhHHHHHH---------------
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLGE---FEVVP-IMEHYGCVVDLLGRA-GLLSEANEFL--------------- 73 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~---~g~~p-~~~~~~~li~~~~~~-g~~~~A~~~f--------------- 73 (112)
..+|+.+-..|.+.|++++|...+++...- .|-.+ -..+++-+-..|.+. |++++|.+.|
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~ 156 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence 568888999999999999999999887641 11111 145778888899996 9999999988
Q ss_pred ----H----HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770 74 ----W----SACKIHGAVKLSHEVGKRLLELQPEHCR 102 (112)
Q Consensus 74 ----~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 102 (112)
| ..+.+.|+.++|...+++..+..|.+..
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 193 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence 1 5677889999999999999988776544
No 123
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.00 E-value=0.0023 Score=35.64 Aligned_cols=61 Identities=15% Similarity=0.185 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhc
Q 033770 49 IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSN 109 (112)
Q Consensus 49 ~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~ 109 (112)
+...+..+...+.+.|++++|.+.| | ..+...|+.++|...+++..+..|.++..+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4567788888999999999999999 2 67788999999999999999988887665554443
No 124
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.0024 Score=35.59 Aligned_cols=60 Identities=10% Similarity=-0.031 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
++...+..+=..+.+.|++++|...+++... . -+.+...|..+-..|.+.|++++|.+.|
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 61 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLIT-A-QPQNPVGYSNKAMALIKLGEYTQAIQMC 61 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 4566777788888999999999999999875 2 2236667777777788888888887776
No 125
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=96.98 E-value=0.023 Score=36.73 Aligned_cols=89 Identities=7% Similarity=-0.068 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC-HHHHHHHHHHHHh--------cCChhHHHHHH-----------
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPI-MEHYGCVVDLLGR--------AGLLSEANEFL----------- 73 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~--------~g~~~~A~~~f----------- 73 (112)
...+..+-.++.+.|++++|...|++..+...-.|+ ...+..+-..|.+ .|++++|.+.|
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 131 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE 131 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch
Confidence 566777888899999999999999999863221222 4456667777888 99999999998
Q ss_pred --H---------------------HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770 74 --W---------------------SACKIHGAVKLSHEVGKRLLELQPEHCR 102 (112)
Q Consensus 74 --~---------------------~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 102 (112)
+ ..+...|+.+.|...+++..+..|+++.
T Consensus 132 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 183 (261)
T 3qky_A 132 LVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPW 183 (261)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCch
Confidence 0 3466789999999999999988887543
No 126
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.97 E-value=0.014 Score=34.00 Aligned_cols=81 Identities=11% Similarity=0.027 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhc---cCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-----------------
Q 033770 15 VTFVAVLTACARARLVELGLELFHSLLGE---FEVVP-IMEHYGCVVDLLGRAGLLSEANEFL----------------- 73 (112)
Q Consensus 15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~---~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f----------------- 73 (112)
.++..+-..+...|++++|...+++.... .+-.+ ....+..+-..|...|++++|.+.+
T Consensus 50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 129 (164)
T 3ro3_A 50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG 129 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHH
Confidence 35666777777788888888877776531 11111 1445666677777888888888777
Q ss_pred --H----HHHHhhCChhHHHHHHHHHHh
Q 033770 74 --W----SACKIHGAVKLSHEVGKRLLE 95 (112)
Q Consensus 74 --~----~~~~~~g~~~~a~~~~~~m~~ 95 (112)
+ ..+...|+.++|.+.+++..+
T Consensus 130 ~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 130 RACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 1 556677788888877777664
No 127
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.97 E-value=0.015 Score=32.37 Aligned_cols=81 Identities=17% Similarity=0.133 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHHH---HHHHhhCChhHHHHH
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFLW---SACKIHGAVKLSHEV 89 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~---~~~~~~g~~~~a~~~ 89 (112)
|...+..+=..+.+.|++++|...|++..+ .. +-+...|..+-..|.+.|++++|.+.|= ......++...+.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l 83 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE-TD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSEL 83 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHH
Confidence 566788888899999999999999999885 32 2256788999999999999999999972 333455666666665
Q ss_pred HHHHHh
Q 033770 90 GKRLLE 95 (112)
Q Consensus 90 ~~~m~~ 95 (112)
-..+.+
T Consensus 84 ~~~l~~ 89 (100)
T 3ma5_A 84 QDAKLK 89 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 128
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.95 E-value=0.0068 Score=37.15 Aligned_cols=85 Identities=15% Similarity=0.019 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHH-HHhcCChhHHHHHH-------------H----
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDL-LGRAGLLSEANEFL-------------W---- 74 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~f-------------~---- 74 (112)
+...+..+-..+.+.|++++|...+++.... .|+...+..+... +.+.++..+|.+.| |
T Consensus 39 ~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la 115 (176)
T 2r5s_A 39 RGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELA 115 (176)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHH
Confidence 5567778888888999999999999887652 2343333322111 12222333455555 2
Q ss_pred HHHHhhCChhHHHHHHHHHHhcCCCC
Q 033770 75 SACKIHGAVKLSHEVGKRLLELQPEH 100 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~~~~~~ 100 (112)
..+...|+.++|...+++..+..|+.
T Consensus 116 ~~~~~~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 116 VQYNQVGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred HHHHHcccHHHHHHHHHHHHHhCccc
Confidence 77888999999999999999888764
No 129
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.0026 Score=36.67 Aligned_cols=60 Identities=12% Similarity=0.001 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhc
Q 033770 50 MEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSN 109 (112)
Q Consensus 50 ~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~ 109 (112)
...|..+-..+.+.|++++|.+.| | .++.+.|++++|...+++..+.+|.++..+..+..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 445666777889999999999999 3 77888999999999999999999988776665543
No 130
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.93 E-value=0.0059 Score=44.39 Aligned_cols=84 Identities=13% Similarity=0.107 Sum_probs=64.9
Q ss_pred HhccCcHHHHHHHHHHhhhc----cC-CCc-CHHHHHHHHHHHHhcCChhHHHHHH---------------------H--
Q 033770 24 CARARLVELGLELFHSLLGE----FE-VVP-IMEHYGCVVDLLGRAGLLSEANEFL---------------------W-- 74 (112)
Q Consensus 24 ~~~~~~~~~a~~~~~~m~~~----~g-~~p-~~~~~~~li~~~~~~g~~~~A~~~f---------------------~-- 74 (112)
+...|++++|+.++++.... .| -.| ...+++.|...|...|++++|..++ +
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45789999999888776531 22 123 3567889999999999999999998 1
Q ss_pred --HHHHhhCChhHHHHHHHHHHh-----cCCCCCcchhhh
Q 033770 75 --SACKIHGAVKLSHEVGKRLLE-----LQPEHCRRYVVL 107 (112)
Q Consensus 75 --~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~l 107 (112)
..|...|+.++|+.++++..+ ++|++|.+-.++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 438 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLE 438 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 778889999999999998873 678877655443
No 131
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=96.91 E-value=0.0052 Score=40.27 Aligned_cols=79 Identities=11% Similarity=0.060 Sum_probs=62.9
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC-----HHHHHHHHHHHHhcCChhHHHHHH------------------
Q 033770 17 FVAVLTACARARLVELGLELFHSLLGEFEVVPI-----MEHYGCVVDLLGRAGLLSEANEFL------------------ 73 (112)
Q Consensus 17 ~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~f------------------ 73 (112)
+...=..+.+.|++++|...+++... . .|+ ...+..+-..|...|++++|.+.+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~-~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQ-V--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-H--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHh-h--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 33344566788999999999999886 3 233 467888999999999999999998
Q ss_pred -H----HHHHhhCChhHHHHHHHHHHhcCC
Q 033770 74 -W----SACKIHGAVKLSHEVGKRLLELQP 98 (112)
Q Consensus 74 -~----~~~~~~g~~~~a~~~~~~m~~~~~ 98 (112)
| ..+...|++++|...+++..+..|
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 114 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISR 114 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 1 677888999999999999876433
No 132
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.91 E-value=0.0027 Score=37.30 Aligned_cols=60 Identities=7% Similarity=0.009 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770 51 EHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNV 110 (112)
Q Consensus 51 ~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~ 110 (112)
..+.-.=..|.+.|++++|.+.| | .++.+.|++++|...+++..+++|+++..+..+..+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 44555556789999999999999 3 788899999999999999999999887766655443
No 133
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.89 E-value=0.0089 Score=42.81 Aligned_cols=82 Identities=10% Similarity=-0.043 Sum_probs=62.7
Q ss_pred ccCcHHHHHHHHHHhhhc----cC-CCc-CHHHHHHHHHHHHhcCChhHHHHHH---------------------H----
Q 033770 26 RARLVELGLELFHSLLGE----FE-VVP-IMEHYGCVVDLLGRAGLLSEANEFL---------------------W---- 74 (112)
Q Consensus 26 ~~~~~~~a~~~~~~m~~~----~g-~~p-~~~~~~~li~~~~~~g~~~~A~~~f---------------------~---- 74 (112)
+.|++++|+.++++.... .| -.| ...+++.|-..|...|++++|..++ +
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999988876531 22 123 3467889999999999999999998 1
Q ss_pred HHHHhhCChhHHHHHHHHHHh-----cCCCCCcchhhh
Q 033770 75 SACKIHGAVKLSHEVGKRLLE-----LQPEHCRRYVVL 107 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~l 107 (112)
..|...|+.++|+.++++..+ .+|++|.+-.+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~ 427 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIK 427 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 778889999999999998874 678777655443
No 134
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.86 E-value=0.003 Score=36.75 Aligned_cols=59 Identities=14% Similarity=-0.049 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770 52 HYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNV 110 (112)
Q Consensus 52 ~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~ 110 (112)
.+-.+-..+.+.|++++|.+.| | ..+...|+.++|...+++..+.+|+++..+..+..+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~ 94 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 94 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3445566788999999999999 3 788889999999999999999999987766655443
No 135
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.85 E-value=0.012 Score=36.22 Aligned_cols=83 Identities=11% Similarity=-0.068 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhc---cCCCc--CHHHHHHHHHHHHhcCChhHHHHHH--------------
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGE---FEVVP--IMEHYGCVVDLLGRAGLLSEANEFL-------------- 73 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~---~g~~p--~~~~~~~li~~~~~~g~~~~A~~~f-------------- 73 (112)
...++..+=..+...|++++|...+++.... .|-.| ....+..+-..|.+.|++++|.+.+
T Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 144 (203)
T 3gw4_A 65 EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQV 144 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchH
Confidence 3456777777888999999999999887641 22112 2445778888899999999999998
Q ss_pred -----H----HHHHhhCChhHHHHHHHHHHh
Q 033770 74 -----W----SACKIHGAVKLSHEVGKRLLE 95 (112)
Q Consensus 74 -----~----~~~~~~g~~~~a~~~~~~m~~ 95 (112)
+ ..+...|+.++|.+.+++..+
T Consensus 145 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 145 AIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1 667788999999999988875
No 136
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.84 E-value=0.012 Score=32.28 Aligned_cols=60 Identities=12% Similarity=0.053 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc--CHHHHHHHHHHHHhc-CChhHHHHHH
Q 033770 12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP--IMEHYGCVVDLLGRA-GLLSEANEFL 73 (112)
Q Consensus 12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p--~~~~~~~li~~~~~~-g~~~~A~~~f 73 (112)
.+...+..+-..+.+.|++++|...+++..+ . ... +...+..+-..|.+. |++++|.+.|
T Consensus 38 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-~-~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~ 100 (112)
T 2kck_A 38 EESKYWLMKGKALYNLERYEEAVDCYNYVIN-V-IEDEYNKDVWAAKADALRYIEGKEVEAEIAE 100 (112)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-T-SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-h-CcccchHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4667788888899999999999999999885 2 223 578899999999999 9999999886
No 137
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.84 E-value=0.011 Score=34.48 Aligned_cols=83 Identities=8% Similarity=-0.067 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC----HHHHHHHHHHHHhcCChhHHHHHH----------------
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPI----MEHYGCVVDLLGRAGLLSEANEFL---------------- 73 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~f---------------- 73 (112)
..++..+-..+...|++++|...+++......-.++ ...+..+-..|...|++++|.+.+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 346677777888999999999999887641100111 247788889999999999999999
Q ss_pred ---H----HHHHhhCChhHHHHHHHHHHhc
Q 033770 74 ---W----SACKIHGAVKLSHEVGKRLLEL 96 (112)
Q Consensus 74 ---~----~~~~~~g~~~~a~~~~~~m~~~ 96 (112)
+ ..+...|+.++|.+.+++..+.
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 1 6677889999999999998753
No 138
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.79 E-value=0.0086 Score=40.58 Aligned_cols=85 Identities=12% Similarity=0.061 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-C----HHHHHHHHHHHHhcCChhHHHHHH------------
Q 033770 11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-I----MEHYGCVVDLLGRAGLLSEANEFL------------ 73 (112)
Q Consensus 11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~----~~~~~~li~~~~~~g~~~~A~~~f------------ 73 (112)
.+....+...=..+.+.|++++|...+++... . .| + ...+..+-..|...|++++|.+.+
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~-~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 82 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQ-V--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD 82 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh-c--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc
Confidence 44555666667778899999999999999886 3 23 2 357888889999999999999987
Q ss_pred -------H----HHHHhhCChhHHHHHHHHHHhcCC
Q 033770 74 -------W----SACKIHGAVKLSHEVGKRLLELQP 98 (112)
Q Consensus 74 -------~----~~~~~~g~~~~a~~~~~~m~~~~~ 98 (112)
| ..+...|++++|...+++..+..|
T Consensus 83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 118 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISR 118 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1 677888999999999999886443
No 139
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=96.77 E-value=0.018 Score=39.34 Aligned_cols=80 Identities=10% Similarity=-0.038 Sum_probs=55.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhc---cCCC-cCHHHHHHHHHHHHhcCChhHHHHHH------------------
Q 033770 16 TFVAVLTACARARLVELGLELFHSLLGE---FEVV-PIMEHYGCVVDLLGRAGLLSEANEFL------------------ 73 (112)
Q Consensus 16 t~~~li~~~~~~~~~~~a~~~~~~m~~~---~g~~-p~~~~~~~li~~~~~~g~~~~A~~~f------------------ 73 (112)
++..+-..+...|++++|...+++.... .+-. ....++..+-..|.+.|++++|.+.+
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 344 (411)
T 4a1s_A 265 ANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEAR 344 (411)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHH
Confidence 6667777777888888888887776531 1111 12456677777788888888888777
Q ss_pred -H----HHHHhhCChhHHHHHHHHHHh
Q 033770 74 -W----SACKIHGAVKLSHEVGKRLLE 95 (112)
Q Consensus 74 -~----~~~~~~g~~~~a~~~~~~m~~ 95 (112)
| ..+...|+.++|.+.+++..+
T Consensus 345 ~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 345 ACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1 666777888888888877764
No 140
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.011 Score=32.68 Aligned_cols=53 Identities=17% Similarity=0.085 Sum_probs=45.3
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCC
Q 033770 48 PIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEH 100 (112)
Q Consensus 48 p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~ 100 (112)
++...+..+-..+.+.|++++|.+.| | ..+...|++++|.+.+++..+..|++
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 35667777888899999999999998 2 77888999999999999999888876
No 141
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.71 E-value=0.018 Score=38.98 Aligned_cols=81 Identities=11% Similarity=0.006 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhc---cCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-----------------
Q 033770 15 VTFVAVLTACARARLVELGLELFHSLLGE---FEVVP-IMEHYGCVVDLLGRAGLLSEANEFL----------------- 73 (112)
Q Consensus 15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~---~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f----------------- 73 (112)
.++..+-..+...|++++|...+++.... .+-.+ ...++..+-..|.+.|++++|.+.+
T Consensus 228 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 307 (406)
T 3sf4_A 228 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEG 307 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 36777777888888888888888776531 11111 1556777888888888888888887
Q ss_pred --H----HHHHhhCChhHHHHHHHHHHh
Q 033770 74 --W----SACKIHGAVKLSHEVGKRLLE 95 (112)
Q Consensus 74 --~----~~~~~~g~~~~a~~~~~~m~~ 95 (112)
| ..+...|+.++|.+.+++..+
T Consensus 308 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 308 RACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 666778888888888888765
No 142
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.71 E-value=0.012 Score=33.24 Aligned_cols=60 Identities=13% Similarity=0.086 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
.+...+..+-..+.+.|++++|...+++... .. +.+...|..+-..|.+.|++++|.+.|
T Consensus 17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 17 DNMLLRFTLGKTYAEHEQFDAALPHLRAALD-FD-PTYSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HC-CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3677888888899999999999999999885 22 236778888999999999999999997
No 143
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.70 E-value=0.0086 Score=36.69 Aligned_cols=90 Identities=13% Similarity=0.060 Sum_probs=67.4
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-----------H---HH---HH
Q 033770 17 FVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-----------W---SA---CK 78 (112)
Q Consensus 17 ~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-----------~---~~---~~ 78 (112)
+..+-..+.+.|++++|...+++... ..| +...+..+-..|.+.|++++|.+.| + .+ +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSD---ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCH---HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHH
Confidence 34455677889999999999999774 234 6778889999999999999999998 1 11 12
Q ss_pred hhCChhHHHHHHHHHHhcCCCCCcchhhhhc
Q 033770 79 IHGAVKLSHEVGKRLLELQPEHCRRYVVLSN 109 (112)
Q Consensus 79 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~ 109 (112)
..+....|...+++..+..|+++..+..+..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~ 116 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAV 116 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 2234456788999998899988776665544
No 144
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.69 E-value=0.0082 Score=34.29 Aligned_cols=59 Identities=7% Similarity=-0.105 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
+...+..+-..+.+.|++++|...|++..+ .. +-+...+..+-..|.+.|++++|.+.|
T Consensus 26 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 84 (117)
T 3k9i_A 26 LAECYLGLGSTFRTLGEYRKAEAVLANGVK-QF-PNHQALRVFYAMVLYNLGRYEQGVELL 84 (117)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-CCchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 456778888899999999999999999885 22 226778888999999999999999997
No 145
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.68 E-value=0.026 Score=37.38 Aligned_cols=82 Identities=11% Similarity=-0.007 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhh---ccCCCc--CHHHHHHHHHHHHhcCChhHHHHHH---------------
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLG---EFEVVP--IMEHYGCVVDLLGRAGLLSEANEFL--------------- 73 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~---~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~f--------------- 73 (112)
..+|+.+=..|...|++++|...+++... ..+-.+ +..+++-+-..|.+.|++++|.+.+
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 34788888889999999999999988762 122112 2257888888999999999999998
Q ss_pred ----H----HHHHhhCChhHH-HHHHHHHHh
Q 033770 74 ----W----SACKIHGAVKLS-HEVGKRLLE 95 (112)
Q Consensus 74 ----~----~~~~~~g~~~~a-~~~~~~m~~ 95 (112)
| ..+.+.|+.++| ...+++...
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 1 566778889998 776776653
No 146
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.68 E-value=0.019 Score=35.77 Aligned_cols=85 Identities=12% Similarity=-0.044 Sum_probs=64.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC--------H-----HHHHHHHHHHHhcCChhHHHHHH----------
Q 033770 17 FVAVLTACARARLVELGLELFHSLLGEFEVVPI--------M-----EHYGCVVDLLGRAGLLSEANEFL---------- 73 (112)
Q Consensus 17 ~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~--------~-----~~~~~li~~~~~~g~~~~A~~~f---------- 73 (112)
+...=..+.+.|++++|...+++..+ . .|+ . ..|+-+=.++.+.|++++|.+.+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~-l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAME-I--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH-H--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh-h--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 34444566788999999999998875 2 233 2 27888888899999988888776
Q ss_pred ----------H--------HHHHhhCChhHHHHHHHHHHhcCCCCCcch
Q 033770 74 ----------W--------SACKIHGAVKLSHEVGKRLLELQPEHCRRY 104 (112)
Q Consensus 74 ----------~--------~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 104 (112)
| .++...|+.++|...|++..++.|.+....
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~ 139 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 139 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3 566777999999999999999888765543
No 147
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=96.68 E-value=0.0051 Score=42.16 Aligned_cols=83 Identities=10% Similarity=-0.059 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC----HHHHHHHHHHHHhcCChhHHHHHH----------------
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPI----MEHYGCVVDLLGRAGLLSEANEFL---------------- 73 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~f---------------- 73 (112)
..++..+-..+...|++++|...+++......-.++ ...+..+-..|.+.|++++|.+.|
T Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 302 (411)
T 4a1s_A 223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVE 302 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 347777888899999999999999987641100112 237888999999999999999998
Q ss_pred ---H----HHHHhhCChhHHHHHHHHHHhc
Q 033770 74 ---W----SACKIHGAVKLSHEVGKRLLEL 96 (112)
Q Consensus 74 ---~----~~~~~~g~~~~a~~~~~~m~~~ 96 (112)
| ..+...|+.++|...+++..+.
T Consensus 303 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 303 AQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 6778899999999999998764
No 148
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.67 E-value=0.016 Score=38.34 Aligned_cols=80 Identities=11% Similarity=0.071 Sum_probs=62.0
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhccCCC-cC----HHHHHHHHHHHHhcCChhHHHHHH------------------
Q 033770 17 FVAVLTACARARLVELGLELFHSLLGEFEVV-PI----MEHYGCVVDLLGRAGLLSEANEFL------------------ 73 (112)
Q Consensus 17 ~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~-p~----~~~~~~li~~~~~~g~~~~A~~~f------------------ 73 (112)
+..+-..+...+++++|...+++... .... +| ..+++.+-..|.+.|++++|.+.|
T Consensus 118 ~~~l~~~~~~~~~~~~Ai~~~~~al~-~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (293)
T 3u3w_A 118 QYYVAAYVLKKVDYEYCILELKKLLN-QQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV 196 (293)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHH-TCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHcccCHHHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 33466666777899999999999875 2222 23 336888989999999999999988
Q ss_pred --H----HHHHhhCChhHHHHHHHHHHhcC
Q 033770 74 --W----SACKIHGAVKLSHEVGKRLLELQ 97 (112)
Q Consensus 74 --~----~~~~~~g~~~~a~~~~~~m~~~~ 97 (112)
| ..|.+.|+.++|...+++..+..
T Consensus 197 ~~~~nlg~~y~~~~~y~~A~~~~~~al~~~ 226 (293)
T 3u3w_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 1 77788899999999999887643
No 149
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.65 E-value=0.011 Score=40.53 Aligned_cols=21 Identities=10% Similarity=-0.028 Sum_probs=10.4
Q ss_pred HHHHhhCChhHHHHHHHHHHh
Q 033770 75 SACKIHGAVKLSHEVGKRLLE 95 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~ 95 (112)
..+.+.|+.++|...+++..+
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 344444555555555555444
No 150
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=96.62 E-value=0.014 Score=39.95 Aligned_cols=82 Identities=6% Similarity=-0.026 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhcc---CC-Cc-CHHHHHHHHHHHHhcCChhHHHHHH---------------
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLGEF---EV-VP-IMEHYGCVVDLLGRAGLLSEANEFL--------------- 73 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~---g~-~p-~~~~~~~li~~~~~~g~~~~A~~~f--------------- 73 (112)
..++..+=..+...|+.++|...+.+...-. +- .| ...+++.+-..|.+.|++++|.+.|
T Consensus 143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 222 (383)
T 3ulq_A 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL 222 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH
Confidence 3456666677777788887777777765311 10 11 2345666677777888888888777
Q ss_pred ----H----HHHHhhCChhHHHHHHHHHHh
Q 033770 74 ----W----SACKIHGAVKLSHEVGKRLLE 95 (112)
Q Consensus 74 ----~----~~~~~~g~~~~a~~~~~~m~~ 95 (112)
| ..|...|+.++|.+.+++..+
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 566677788888877777765
No 151
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.60 E-value=0.012 Score=39.07 Aligned_cols=88 Identities=8% Similarity=-0.051 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhcc-CcHHHHHHHHHHhhhc---cCCCcC-HHHHHHHHHHHHhcCChhHHHHHH---------------
Q 033770 14 EVTFVAVLTACARA-RLVELGLELFHSLLGE---FEVVPI-MEHYGCVVDLLGRAGLLSEANEFL--------------- 73 (112)
Q Consensus 14 ~~t~~~li~~~~~~-~~~~~a~~~~~~m~~~---~g~~p~-~~~~~~li~~~~~~g~~~~A~~~f--------------- 73 (112)
..+++.+=..|.+. |++++|...+++...- .+-.+. ..+++-+-..|.+.|++++|.+.|
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 196 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH
Confidence 34677788888885 9999999999887641 111111 356788888999999999999998
Q ss_pred -----H----HHHHhhCChhHHHHHHHHHHhcCCCCC
Q 033770 74 -----W----SACKIHGAVKLSHEVGKRLLELQPEHC 101 (112)
Q Consensus 74 -----~----~~~~~~g~~~~a~~~~~~m~~~~~~~~ 101 (112)
| ..+...|+.+.|...+++..++.|...
T Consensus 197 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 233 (292)
T 1qqe_A 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA 233 (292)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 1 345667899999999999888777643
No 152
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.60 E-value=0.015 Score=32.82 Aligned_cols=66 Identities=12% Similarity=0.016 Sum_probs=52.9
Q ss_pred HHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHH
Q 033770 32 LGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLL 94 (112)
Q Consensus 32 ~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~ 94 (112)
++...+++..+ --+.+...+..+-..|.+.|++++|.+.| | ..+...|+.++|...+++..
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666766653 12236788899999999999999999999 3 78889999999999999998
Q ss_pred hcCCC
Q 033770 95 ELQPE 99 (112)
Q Consensus 95 ~~~~~ 99 (112)
+..|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 76654
No 153
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.58 E-value=0.0026 Score=35.08 Aligned_cols=77 Identities=14% Similarity=0.019 Sum_probs=54.9
Q ss_pred HHHHhccCcHHHHHHHHHHhhhccCCCc-CHH-HHHHHHHHHHhcCChhHHHHHHH----------HHHHhhCChhHHHH
Q 033770 21 LTACARARLVELGLELFHSLLGEFEVVP-IME-HYGCVVDLLGRAGLLSEANEFLW----------SACKIHGAVKLSHE 88 (112)
Q Consensus 21 i~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~-~~~~li~~~~~~g~~~~A~~~f~----------~~~~~~g~~~~a~~ 88 (112)
-..+.+.|++++|...+++..+ . .| +.. .+..+-..|.+.|++++|.+.|- .++. .+.+.++..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~-~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-~~~~~~a~~ 82 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQ-T--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA-RKMVMDILN 82 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH-H--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH-HHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH-H--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH-HHHHHHHHH
Confidence 3456788999999999999875 2 34 556 78888888999999999999981 2222 245666666
Q ss_pred HHHHHHhcCCCCC
Q 033770 89 VGKRLLELQPEHC 101 (112)
Q Consensus 89 ~~~~m~~~~~~~~ 101 (112)
.+++.....|+++
T Consensus 83 ~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 83 FYNKDMYNQLEHH 95 (99)
T ss_dssp HHCCTTHHHHCCS
T ss_pred HHHHHhccCcccc
Confidence 6666655555543
No 154
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.57 E-value=0.019 Score=32.30 Aligned_cols=60 Identities=17% Similarity=0.076 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
.+...+..+-..+.+.|++++|...+++... . .+.+...+..+-..|.+.|++++|.+.|
T Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 103 (131)
T 2vyi_A 44 ANAVYFCNRAAAYSKLGNYAGAVQDCERAIC-I-DPAYSKAYGRMGLALSSLNKHVEAVAYY 103 (131)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhchHHHHHHHHHHHh-c-CccCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4677888888999999999999999999885 3 2235778889999999999999999997
No 155
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.55 E-value=0.052 Score=35.88 Aligned_cols=80 Identities=11% Similarity=0.028 Sum_probs=64.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhc---c-CCCcC-HHHHHHHHHHHHhcCChhHHHHHH-----------------
Q 033770 16 TFVAVLTACARARLVELGLELFHSLLGE---F-EVVPI-MEHYGCVVDLLGRAGLLSEANEFL----------------- 73 (112)
Q Consensus 16 t~~~li~~~~~~~~~~~a~~~~~~m~~~---~-g~~p~-~~~~~~li~~~~~~g~~~~A~~~f----------------- 73 (112)
+++.+-..|...|++++|...+++.... . +..|. ..++.-+-..|.+.|++++|.+.+
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 6889999999999999999999998731 1 23332 347788899999999999999998
Q ss_pred --H----HHHHhhCC-hhHHHHHHHHHHh
Q 033770 74 --W----SACKIHGA-VKLSHEVGKRLLE 95 (112)
Q Consensus 74 --~----~~~~~~g~-~~~a~~~~~~m~~ 95 (112)
| ..+.+.|+ .++|.+.+++...
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 2 66677784 5999999988874
No 156
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.49 E-value=0.019 Score=30.59 Aligned_cols=61 Identities=25% Similarity=0.296 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhc
Q 033770 49 IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSN 109 (112)
Q Consensus 49 ~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~ 109 (112)
+...+..+-..|.+.|++++|.+.| | ..+...|+.++|...+++..+..|.++..+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4567777888899999999999998 2 77888999999999999999989988766655543
No 157
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.47 E-value=0.033 Score=37.23 Aligned_cols=86 Identities=13% Similarity=0.018 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhc---cCCCc-CHHHHHHHHHHHHhcCChhHHHHHH----------------
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLGE---FEVVP-IMEHYGCVVDLLGRAGLLSEANEFL---------------- 73 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~---~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f---------------- 73 (112)
..+++.+=..|.+ |++++|...+++...- .|-.+ ...+++-+-..|.+.|++++|.+.|
T Consensus 116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 194 (307)
T 2ifu_A 116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTC 194 (307)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHH
Confidence 3466677777777 9999998888876631 11111 1456777888899999999999888
Q ss_pred ---H----HHHHhhCChhHHHHHHHHHHhcCCCCC
Q 033770 74 ---W----SACKIHGAVKLSHEVGKRLLELQPEHC 101 (112)
Q Consensus 74 ---~----~~~~~~g~~~~a~~~~~~m~~~~~~~~ 101 (112)
| ..+...|+.+.|...|++.. ..|...
T Consensus 195 ~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 195 YKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence 1 23344589999999999888 777543
No 158
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=96.47 E-value=0.011 Score=40.74 Aligned_cols=81 Identities=7% Similarity=0.044 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-----CHHHHHHHHHH----HHhcCChhHHHHHH---------H
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-----IMEHYGCVVDL----LGRAGLLSEANEFL---------W 74 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-----~~~~~~~li~~----~~~~g~~~~A~~~f---------~ 74 (112)
+...+..++..+.+.|+.+.|...++.|.+ ..| +..+..-|..+ ....++.++|..+| |
T Consensus 135 ~lea~~l~vqi~L~~~r~d~A~k~l~~~~~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~ 211 (310)
T 3mv2_B 135 TTELLLLAIEVALLNNNVSTASTIFDNYTN---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTW 211 (310)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCc
Confidence 567777889999999999999999999975 245 24444444444 33344899999998 3
Q ss_pred -------HHHHhhCChhHHHHHHHHHHhc
Q 033770 75 -------SACKIHGAVKLSHEVGKRLLEL 96 (112)
Q Consensus 75 -------~~~~~~g~~~~a~~~~~~m~~~ 96 (112)
.++.+.|++++|++.++.+.+.
T Consensus 212 ~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 212 KTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6778899999999999987765
No 159
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=96.42 E-value=0.029 Score=38.30 Aligned_cols=79 Identities=4% Similarity=-0.098 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HH
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SA 76 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~ 76 (112)
..+|..+-.++.+.|++++|...+++..+ .. +.+...|..+-.+|.+.|++++|.+.| | ..
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~-~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALE-LD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 47888999999999999999999999885 32 237888999999999999999999999 2 66
Q ss_pred HHhhCChhHH-HHHHHHHH
Q 033770 77 CKIHGAVKLS-HEVGKRLL 94 (112)
Q Consensus 77 ~~~~g~~~~a-~~~~~~m~ 94 (112)
+.+.|+.++| ...++.|.
T Consensus 274 ~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 274 QQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6777888887 44555554
No 160
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=96.40 E-value=0.038 Score=37.46 Aligned_cols=83 Identities=16% Similarity=0.052 Sum_probs=50.8
Q ss_pred HHHhccCcHHHHHHHHHHhhhccCCCcC--HHHHHHHHHHHHhcCChhHHHHHH-----------------H---HHHHh
Q 033770 22 TACARARLVELGLELFHSLLGEFEVVPI--MEHYGCVVDLLGRAGLLSEANEFL-----------------W---SACKI 79 (112)
Q Consensus 22 ~~~~~~~~~~~a~~~~~~m~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~f-----------------~---~~~~~ 79 (112)
..+.+.+++++|+..|+...+ .. .|. ...+..+=.++.+.|++++|++.| + .++.+
T Consensus 143 ~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~ 220 (282)
T 4f3v_A 143 VVYGAAERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRS 220 (282)
T ss_dssp HHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH
Confidence 355666777777777764432 11 111 124555556677777777777766 1 55667
Q ss_pred hCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770 80 HGAVKLSHEVGKRLLELQPEHCRRYVVL 107 (112)
Q Consensus 80 ~g~~~~a~~~~~~m~~~~~~~~~~~~~l 107 (112)
.|+.++|..+|+++...+|. +.....|
T Consensus 221 lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 221 QGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 77778888888877777776 4444333
No 161
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.32 E-value=0.034 Score=40.44 Aligned_cols=82 Identities=5% Similarity=-0.122 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhh----ccC-CCc-CHHHHHHHHHHHHhcCChhHHHHHH--------------
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLG----EFE-VVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------- 73 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~----~~g-~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------- 73 (112)
..+++.|-..|...|++++|..++++... .+| -.| ...+++-|-..|...|++++|+.++
T Consensus 351 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~ 430 (490)
T 3n71_A 351 LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS 430 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 45788999999999999999999888663 123 224 4566788999999999999999998
Q ss_pred --H---------HHHHhhCChhHHHHHHHHHHh
Q 033770 74 --W---------SACKIHGAVKLSHEVGKRLLE 95 (112)
Q Consensus 74 --~---------~~~~~~g~~~~a~~~~~~m~~ 95 (112)
. .++...+..+.|+.+++.+++
T Consensus 431 Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 431 HPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 666677889999999999875
No 162
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.26 E-value=0.054 Score=33.11 Aligned_cols=83 Identities=11% Similarity=-0.084 Sum_probs=66.9
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhh---ccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH---------------
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLG---EFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL--------------- 73 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~---~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f--------------- 73 (112)
...++..+-..+...|++++|...+++... +.|..| ....++.+-..|...|++++|.+.+
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 566788888889999999999999988764 122333 4566778888999999999999998
Q ss_pred -----H----HHHHhhCChhHHHHHHHHHHh
Q 033770 74 -----W----SACKIHGAVKLSHEVGKRLLE 95 (112)
Q Consensus 74 -----~----~~~~~~g~~~~a~~~~~~m~~ 95 (112)
+ ..+...|++++|...+++..+
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1 667778999999999998875
No 163
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=96.25 E-value=0.043 Score=34.86 Aligned_cols=74 Identities=11% Similarity=0.050 Sum_probs=57.1
Q ss_pred ccCcHHHHHHHHHHhhhccCCCcC-HHHH-----------------HHHHHHHHhcCChhHHHHHH--------------
Q 033770 26 RARLVELGLELFHSLLGEFEVVPI-MEHY-----------------GCVVDLLGRAGLLSEANEFL-------------- 73 (112)
Q Consensus 26 ~~~~~~~a~~~~~~m~~~~g~~p~-~~~~-----------------~~li~~~~~~g~~~~A~~~f-------------- 73 (112)
..|+.++|...|++..+. .|+ ...+ -.+-..|.+.|++++|.+.|
T Consensus 108 ~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 184 (225)
T 2yhc_A 108 DPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATR 184 (225)
T ss_dssp CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred CcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccH
Confidence 368899999999999852 243 2222 23445688999999999998
Q ss_pred --H----HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770 74 --W----SACKIHGAVKLSHEVGKRLLELQPEHCR 102 (112)
Q Consensus 74 --~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 102 (112)
| .++.+.|+.++|.+.++.+....|++..
T Consensus 185 ~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 185 DALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 2 7888999999999999999887787543
No 164
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.24 E-value=0.014 Score=32.49 Aligned_cols=51 Identities=8% Similarity=-0.113 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCC
Q 033770 49 IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPE 99 (112)
Q Consensus 49 ~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~ 99 (112)
+...+..+-..|.+.|++++|.+.| | .++...|+.++|.+.+++..++.|.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 6677888899999999999999999 3 8888999999999999998875543
No 165
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.21 E-value=0.017 Score=32.53 Aligned_cols=62 Identities=10% Similarity=-0.034 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCC--CcC----HHHHHHHHHHHHhcCChhHHHHHH
Q 033770 11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEV--VPI----MEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~--~p~----~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
+.+...+..+-..+.+.|++++|...+++... ..- .++ ...+..+-..|.+.|++++|.+.|
T Consensus 35 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 102 (131)
T 1elr_A 35 PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE-VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFY 102 (131)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhccHHHHHHHHHHHHh-hccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 34677888888999999999999999999875 221 122 778888999999999999999997
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.21 E-value=0.072 Score=30.69 Aligned_cols=83 Identities=12% Similarity=-0.057 Sum_probs=63.0
Q ss_pred CCCC----HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhhCChhH
Q 033770 10 LRAN----EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFLWSACKIHGAVKL 85 (112)
Q Consensus 10 ~~p~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~g~~~~ 85 (112)
..|+ ...|..+-..+.+.|++++|...+++..+ . -..+...+..+-..|.+.|++++|.+.|-.+.....+...
T Consensus 57 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 134 (148)
T 2dba_A 57 LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE-K-DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKV 134 (148)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHH
T ss_pred HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh-h-CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 4566 67888888899999999999999999875 2 2236778888999999999999999996344444445555
Q ss_pred HHHHHHHHH
Q 033770 86 SHEVGKRLL 94 (112)
Q Consensus 86 a~~~~~~m~ 94 (112)
+...+..+.
T Consensus 135 ~~~~l~~~~ 143 (148)
T 2dba_A 135 FQEALRNIS 143 (148)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555554
No 167
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.20 E-value=0.011 Score=42.53 Aligned_cols=77 Identities=10% Similarity=-0.077 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S 75 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~ 75 (112)
+..+|..+-.++.+.|++++|...+++..+ . -+-+...|..+-.+|.+.|++++|.+.| | .
T Consensus 39 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-l-~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~ 116 (477)
T 1wao_1 39 NAIYYGNRSLAYLRTECYGYALGDATRAIE-L-DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 116 (477)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-S-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 578889999999999999999999999885 3 2236788899999999999999999999 2 2
Q ss_pred H--HHhhCChhHHHHHHH
Q 033770 76 A--CKIHGAVKLSHEVGK 91 (112)
Q Consensus 76 ~--~~~~g~~~~a~~~~~ 91 (112)
+ +.+.|++++|.+.++
T Consensus 117 ~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 117 CNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhcccc
Confidence 3 667788999998888
No 168
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=96.14 E-value=0.014 Score=40.73 Aligned_cols=61 Identities=13% Similarity=-0.094 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHH--HHHHHH-HHHHhcCChhHHHHHH
Q 033770 12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIME--HYGCVV-DLLGRAGLLSEANEFL 73 (112)
Q Consensus 12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~--~~~~li-~~~~~~g~~~~A~~~f 73 (112)
.+..++..+=..+.+.|++++|...|++..+ ....|... .+..+- -.+.+.|+.++|.+.|
T Consensus 332 ~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y 395 (472)
T 4g1t_A 332 NLFRVCSILASLHALADQYEEAEYYFQKEFS-KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHF 395 (472)
T ss_dssp TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred chhhhhhhHHHHHHHhccHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3455677788889999999999999999875 33333211 122221 1245678999998876
No 169
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.11 E-value=0.026 Score=38.62 Aligned_cols=58 Identities=16% Similarity=0.117 Sum_probs=31.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhh---ccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 16 TFVAVLTACARARLVELGLELFHSLLG---EFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 16 t~~~li~~~~~~~~~~~a~~~~~~m~~---~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
+++.+=..+...|++++|...+++... ..+-+....++..+-..|.+.|++++|.+.+
T Consensus 224 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 284 (378)
T 3q15_A 224 SLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFI 284 (378)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 444455555566666666666665542 0022223445555666666666666666665
No 170
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.11 E-value=0.039 Score=34.92 Aligned_cols=81 Identities=5% Similarity=-0.162 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcC----ChhHHHHHH-----------H---
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAG----LLSEANEFL-----------W--- 74 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~~f-----------~--- 74 (112)
|...+..|=..+.+.++.++|...|++... .| +...+..|=..|.+ | ++++|.+.| +
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~L 91 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAA-QG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVL 91 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 556666666677778899999999998875 44 45666666667777 6 888999888 1
Q ss_pred -HHHHh----hCChhHHHHHHHHHHhcCC
Q 033770 75 -SACKI----HGAVKLSHEVGKRLLELQP 98 (112)
Q Consensus 75 -~~~~~----~g~~~~a~~~~~~m~~~~~ 98 (112)
..|.. .++.++|.+.+++..+.+|
T Consensus 92 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 120 (212)
T 3rjv_A 92 ARVLVNRQAGATDVAHAITLLQDAARDSE 120 (212)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHTSSTT
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHHcCC
Confidence 33333 6688888888888776655
No 171
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.03 E-value=0.02 Score=39.14 Aligned_cols=84 Identities=8% Similarity=-0.029 Sum_probs=49.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H---H-H-H
Q 033770 16 TFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W---S-A-C 77 (112)
Q Consensus 16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~---~-~-~ 77 (112)
.|..+=.++.+.|++++|...+++..+ .. .-+...|..+-.+|.+.|++++|.+.| + . . .
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~-~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLT-EE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 788888899999999999999999875 22 237788999999999999999999999 1 1 1 2
Q ss_pred HhhCChhHHHHHHHHHHhcCCCCC
Q 033770 78 KIHGAVKLSHEVGKRLLELQPEHC 101 (112)
Q Consensus 78 ~~~g~~~~a~~~~~~m~~~~~~~~ 101 (112)
...+..+.+...++.|.+..|.++
T Consensus 310 ~~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCC
Confidence 334567778888888887777553
No 172
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=95.96 E-value=0.014 Score=34.02 Aligned_cols=53 Identities=8% Similarity=-0.014 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcch
Q 033770 52 HYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRY 104 (112)
Q Consensus 52 ~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 104 (112)
.+.-|=..|-+.|++++|.+.| | .+|...|++++|.+.+++..++.|..+..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 79 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADY 79 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhh
Confidence 3444555788999999999999 3 788899999999999999998877665443
No 173
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=95.96 E-value=0.027 Score=38.53 Aligned_cols=83 Identities=8% Similarity=-0.007 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhc---cCCCc-CHHHHHHHHHHHHhcCChhHHHHHH----------------
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLGE---FEVVP-IMEHYGCVVDLLGRAGLLSEANEFL---------------- 73 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~---~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f---------------- 73 (112)
..+++.+=..|...|++++|...+++...- .+-.+ ...+++.+-..|.+.|++++|.+.|
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL 263 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence 456777778888999999999999887641 11111 2247778888899999999999998
Q ss_pred ---H----HHHHhhCChhHHHHHHHHHHhc
Q 033770 74 ---W----SACKIHGAVKLSHEVGKRLLEL 96 (112)
Q Consensus 74 ---~----~~~~~~g~~~~a~~~~~~m~~~ 96 (112)
+ ..+...|+.++|...+++..+.
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 293 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAY 293 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1 6777889999999999988763
No 174
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=95.93 E-value=0.017 Score=38.70 Aligned_cols=85 Identities=8% Similarity=-0.101 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhh---ccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH----------------
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLG---EFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL---------------- 73 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~---~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f---------------- 73 (112)
..+|+.+-..|.+.|++++|...+++... +.|-.+ -..+++-+-..|.+ |++++|.+.|
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~ 154 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQA 154 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHH
Confidence 45778888888899999999988887653 112111 24567778888888 9999999998
Q ss_pred ---H----HHHHhhCChhHHHHHHHHHHhcCCC
Q 033770 74 ---W----SACKIHGAVKLSHEVGKRLLELQPE 99 (112)
Q Consensus 74 ---~----~~~~~~g~~~~a~~~~~~m~~~~~~ 99 (112)
| ..+...|+.++|...+++..+..|.
T Consensus 155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 187 (307)
T 2ifu_A 155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKE 187 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 6677889999999999999875543
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=95.93 E-value=0.044 Score=31.11 Aligned_cols=76 Identities=14% Similarity=0.003 Sum_probs=53.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHhhCChhHHHHHHH
Q 033770 16 TFVAVLTACARARLVELGLELFHSLLGEFEVVPI----MEHYGCVVDLLGRAGLLSEANEFLWSACKIHGAVKLSHEVGK 91 (112)
Q Consensus 16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~g~~~~a~~~~~ 91 (112)
.+..+-.++.+.|++++|...+++... .. |+ ...+..+-..|.+.|++++|.+.|=.......+...+.....
T Consensus 41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~-~~--p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 41 ALYWLGESYYATRNFQLAEAQFRDLVS-RY--PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-HC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH-HC--CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 666777888999999999999999885 22 33 566778888999999999999997222233333344444433
Q ss_pred HHH
Q 033770 92 RLL 94 (112)
Q Consensus 92 ~m~ 94 (112)
.+.
T Consensus 118 ~l~ 120 (129)
T 2xev_A 118 RLQ 120 (129)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 176
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=95.87 E-value=0.18 Score=33.21 Aligned_cols=78 Identities=12% Similarity=0.094 Sum_probs=59.2
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhhcc--CCCcC--HHHHHHHHHHHHhcCChhHHHHHH--------------------H
Q 033770 19 AVLTACARARLVELGLELFHSLLGEF--EVVPI--MEHYGCVVDLLGRAGLLSEANEFL--------------------W 74 (112)
Q Consensus 19 ~li~~~~~~~~~~~a~~~~~~m~~~~--g~~p~--~~~~~~li~~~~~~g~~~~A~~~f--------------------~ 74 (112)
.+-..+...|++++|...+++..... ...+. ..+|+.+-..|.+.|++++|.+.| |
T Consensus 120 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~ 199 (293)
T 2qfc_A 120 YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR 199 (293)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHH
Confidence 34455677889999999988876311 11122 457888899999999999999998 1
Q ss_pred ----HHHHhhCChhHHHHHHHHHHhc
Q 033770 75 ----SACKIHGAVKLSHEVGKRLLEL 96 (112)
Q Consensus 75 ----~~~~~~g~~~~a~~~~~~m~~~ 96 (112)
..|...|+.++|...+++..+.
T Consensus 200 ~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 200 YNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 6778889999999999988763
No 177
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=95.86 E-value=0.065 Score=36.31 Aligned_cols=74 Identities=7% Similarity=-0.161 Sum_probs=60.2
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-----------------H--HHHHh
Q 033770 19 AVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-----------------W--SACKI 79 (112)
Q Consensus 19 ~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-----------------~--~~~~~ 79 (112)
.....+...|++++|.++|+.+.. .+ |+....-.+-..+.+.|++++|++.| | .++..
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~-~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPV-AG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCC-TT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh-cC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH
Confidence 456677889999999999999874 22 54435555556899999999999988 2 78899
Q ss_pred hCChhHHHHHHHHHHh
Q 033770 80 HGAVKLSHEVGKRLLE 95 (112)
Q Consensus 80 ~g~~~~a~~~~~~m~~ 95 (112)
.|++++|+..|++...
T Consensus 184 LG~~~eAl~~l~~a~~ 199 (282)
T 4f3v_A 184 LALFTEAERRLTEAND 199 (282)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhc
Confidence 9999999999998874
No 178
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.86 E-value=0.024 Score=37.62 Aligned_cols=61 Identities=13% Similarity=0.010 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhc
Q 033770 49 IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSN 109 (112)
Q Consensus 49 ~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~ 109 (112)
+...+..+-..+.+.|++++|.+.| | ..+.+.|++++|...+++..+..|+++..+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4566777888899999999999999 2 77888999999999999999999988766655543
No 179
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.82 E-value=0.058 Score=44.29 Aligned_cols=89 Identities=16% Similarity=0.225 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH--------H----------
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL--------W---------- 74 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f--------~---------- 74 (112)
+...|..+=..|...|++++|..+|... ..|..+...|++.|++++|.+.+ |
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~ 1263 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDG 1263 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhh
Confidence 3334444444444555555555555442 25666666666666666666665 3
Q ss_pred ------------------------HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhccc
Q 033770 75 ------------------------SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNVH 111 (112)
Q Consensus 75 ------------------------~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~y 111 (112)
..|.+.|.+++|.++++.-.+++|.+...+.-|..+|
T Consensus 1264 ~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLy 1324 (1630)
T 1xi4_A 1264 KEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILY 1324 (1630)
T ss_pred hHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHH
Confidence 3456667788888888777666666666665554444
No 180
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=95.39 E-value=0.026 Score=35.08 Aligned_cols=78 Identities=14% Similarity=0.029 Sum_probs=53.8
Q ss_pred hccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCCh----------hHHHHHH-------------H----HH
Q 033770 25 ARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLL----------SEANEFL-------------W----SA 76 (112)
Q Consensus 25 ~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~----------~~A~~~f-------------~----~~ 76 (112)
.+.+.+++|...++...+ ..| +...|+-+=.++.+.|++ ++|...| | .+
T Consensus 13 ~r~~~feeA~~~~~~Ai~---l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYK---SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 345667788888877764 223 666666565666666654 4777777 2 56
Q ss_pred HHhh-----------CChhHHHHHHHHHHhcCCCCCcchh
Q 033770 77 CKIH-----------GAVKLSHEVGKRLLELQPEHCRRYV 105 (112)
Q Consensus 77 ~~~~-----------g~~~~a~~~~~~m~~~~~~~~~~~~ 105 (112)
|.+. |++++|.+.|++..+++|++..+..
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~ 129 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLK 129 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHH
Confidence 6555 4899999999999999998765443
No 181
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.21 E-value=0.21 Score=30.80 Aligned_cols=60 Identities=13% Similarity=0.010 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHhccC---cHHHHHHHHHHhhhccCCCc--CHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 12 ANEVTFVAVLTACARAR---LVELGLELFHSLLGEFEVVP--IMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 12 p~~~t~~~li~~~~~~~---~~~~a~~~~~~m~~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
++.-+--.+=.++++++ ++++|..+++...+ .. .| +....--|=-+|.+.|++++|.+.|
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~-~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP-KG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH-HS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-cC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 45555555555667777 67788888888876 33 23 1222222333456666666666665
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=95.11 E-value=0.1 Score=31.12 Aligned_cols=58 Identities=16% Similarity=-0.107 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
...|..+-.++.+.|++++|...+++..+ .. +.+...|..+-.+|.+.|++++|.+.|
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~-~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~ 120 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLK-RE-ETNEKALFRRAKARIAAWKLDEAEEDL 120 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHh-cC-CcchHHHHHHHHHHHHHhcHHHHHHHH
Confidence 46788888899999999999999999885 32 236888899999999999999999997
No 183
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.07 E-value=0.074 Score=28.88 Aligned_cols=48 Identities=19% Similarity=0.182 Sum_probs=39.0
Q ss_pred HHHHHhcCChhHHHHHH--------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcch
Q 033770 57 VDLLGRAGLLSEANEFL--------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRY 104 (112)
Q Consensus 57 i~~~~~~g~~~~A~~~f--------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 104 (112)
-..+.+.|++++|.+.| | ..+...|+.++|.+.|++..+..|+++..+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 34567788888888887 2 667788999999999999999999877654
No 184
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=94.70 E-value=0.11 Score=30.06 Aligned_cols=44 Identities=16% Similarity=0.131 Sum_probs=30.5
Q ss_pred cHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 29 LVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 29 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
|.-+..+-+..+-. +.+.|++.+..+.++++-|..++.-|.++|
T Consensus 25 D~~e~rrglN~l~~-~DlVP~P~ii~aaLrAcRRvND~alAVR~l 68 (109)
T 1v54_E 25 DAWELRKGMNTLVG-YDLVPEPKIIDAALRACRRLNDFASAVRIL 68 (109)
T ss_dssp CHHHHHHHHHHHTT-SSBCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34455555556554 677777777777777777777777777776
No 185
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=94.67 E-value=0.29 Score=33.04 Aligned_cols=81 Identities=14% Similarity=0.023 Sum_probs=61.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhc---cCCC--c-CHHHHHHHHHHHHhcCChhHHHHHH----------------
Q 033770 16 TFVAVLTACARARLVELGLELFHSLLGE---FEVV--P-IMEHYGCVVDLLGRAGLLSEANEFL---------------- 73 (112)
Q Consensus 16 t~~~li~~~~~~~~~~~a~~~~~~m~~~---~g~~--p-~~~~~~~li~~~~~~g~~~~A~~~f---------------- 73 (112)
+++.+-..+...|++++|...+++.... .+.. | ....+..+-..|...|++++|.+.+
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 3556667788899999999999887641 1222 3 3445666778899999999999988
Q ss_pred --H----HHHHhhCChhHHHHHHHHHHhc
Q 033770 74 --W----SACKIHGAVKLSHEVGKRLLEL 96 (112)
Q Consensus 74 --~----~~~~~~g~~~~a~~~~~~m~~~ 96 (112)
| ..+...|+.++|...+++....
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 203 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENL 203 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 5567789999999999998764
No 186
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=94.62 E-value=0.31 Score=36.86 Aligned_cols=71 Identities=15% Similarity=0.083 Sum_probs=42.8
Q ss_pred CcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH----------------H----HHHHhhCChhHHH
Q 033770 28 RLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL----------------W----SACKIHGAVKLSH 87 (112)
Q Consensus 28 ~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f----------------~----~~~~~~g~~~~a~ 87 (112)
++.+.|..+|+...+. +.-+...|...++.....|+.+.|..+| | .-=.+.|+.+.+.
T Consensus 484 ~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 484 KDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp SCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4466677777666642 3234455566666666667777776666 3 2223457777777
Q ss_pred HHHHHHHhcCCCC
Q 033770 88 EVGKRLLELQPEH 100 (112)
Q Consensus 88 ~~~~~m~~~~~~~ 100 (112)
.+.+.+.+..|++
T Consensus 562 ~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 562 TLEKRFFEKFPEV 574 (679)
T ss_dssp HHHHHHHHHSTTC
T ss_pred HHHHHHHHhCCCC
Confidence 7777777666654
No 187
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=94.44 E-value=0.51 Score=31.77 Aligned_cols=84 Identities=11% Similarity=-0.020 Sum_probs=59.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhh---ccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH------------------
Q 033770 16 TFVAVLTACARARLVELGLELFHSLLG---EFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL------------------ 73 (112)
Q Consensus 16 t~~~li~~~~~~~~~~~a~~~~~~m~~---~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f------------------ 73 (112)
+++.+-..+...|++++|...+++... +.|-.. ...+++.+-..+...|++++|.+.+
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 455566777888999999999888763 112111 1233566777788999999999887
Q ss_pred ---H----HHHHhhCChhHHHHHHHHHHhcCCC
Q 033770 74 ---W----SACKIHGAVKLSHEVGKRLLELQPE 99 (112)
Q Consensus 74 ---~----~~~~~~g~~~~a~~~~~~m~~~~~~ 99 (112)
+ ..+...|++++|...+++..+..+.
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 167 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 167 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 1 4566789999999999998875543
No 188
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.38 E-value=0.25 Score=40.81 Aligned_cols=59 Identities=14% Similarity=0.085 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
-|...|.-++.++.+.|++++|.+.+...++ .. ++....+.+..+|++.+++++..++.
T Consensus 1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk-~~--~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARK-KA--RESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hc--ccccccHHHHHHHHhhcCHHHHHHHH
Confidence 3566777888888888999889888876553 22 33333334777777777766544443
No 189
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=94.38 E-value=0.21 Score=30.75 Aligned_cols=57 Identities=14% Similarity=-0.002 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
..|..+-.++.+.|++++|...+++... . -+.+...+..+-.+|.+.|++++|.+.|
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~-~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~ 145 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLK-I-DKNNVKALYKLGVANMYFGFLEEAKENL 145 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-STTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH-h-CcccHHHHHHHHHHHHHcccHHHHHHHH
Confidence 6788888889999999999999999885 3 2337788889999999999999999998
No 190
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=94.06 E-value=0.33 Score=34.37 Aligned_cols=79 Identities=6% Similarity=-0.185 Sum_probs=50.9
Q ss_pred HHHHHHHHHhccC---cHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHh----cCChhHHHHHH-----------H---
Q 033770 16 TFVAVLTACARAR---LVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGR----AGLLSEANEFL-----------W--- 74 (112)
Q Consensus 16 t~~~li~~~~~~~---~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~f-----------~--- 74 (112)
.+..+=..+.+.| +.++|...+++... .| +...+..|=..|.+ .+++++|.+.| |
T Consensus 330 a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~-~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L 405 (490)
T 2xm6_A 330 AQANLGAIYFRLGSEEEHKKAVEWFRKAAA-KG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQL 405 (490)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3444444444434 67777777777765 32 45666666667766 67888888877 1
Q ss_pred -HHHHh----hCChhHHHHHHHHHHhcCC
Q 033770 75 -SACKI----HGAVKLSHEVGKRLLELQP 98 (112)
Q Consensus 75 -~~~~~----~g~~~~a~~~~~~m~~~~~ 98 (112)
..|.. .++.++|...|+...+.+|
T Consensus 406 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 406 GEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 33333 6788888888888777663
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=93.89 E-value=0.46 Score=32.88 Aligned_cols=58 Identities=7% Similarity=-0.145 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
+..+|..+-.++.+.|++++|...+++..+ +.| +...|..+-.+|.+.|++++|.+.|
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~eA~~~l 330 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALE---IDPSNTKALYRRAQGWQGLKEYDQALADL 330 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHHccCHHHHHHHH
Confidence 456788888889999999999999999875 234 6788889999999999999999997
No 192
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.83 E-value=0.8 Score=31.35 Aligned_cols=82 Identities=15% Similarity=0.048 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhcc---CCCc-CHHHHHHHHHHHHhcCChhHHHHHH----------------
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLGEF---EVVP-IMEHYGCVVDLLGRAGLLSEANEFL---------------- 73 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~---g~~p-~~~~~~~li~~~~~~g~~~~A~~~f---------------- 73 (112)
..++..+-..+...|++++|..+++...... +-.| ....+..++..|...|++++|..++
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 214 (434)
T 4b4t_Q 135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQT 214 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHH
Confidence 3466778888899999999999988876421 1122 3567888999999999999999887
Q ss_pred ----H----HHHHhhCChhHHHHHHHHHHh
Q 033770 74 ----W----SACKIHGAVKLSHEVGKRLLE 95 (112)
Q Consensus 74 ----~----~~~~~~g~~~~a~~~~~~m~~ 95 (112)
+ ..+...++++.|...|.+..+
T Consensus 215 ~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 215 VAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 445566888888887777753
No 193
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=93.80 E-value=0.31 Score=34.79 Aligned_cols=60 Identities=8% Similarity=0.001 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhh----ccC-CCc-CHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLG----EFE-VVP-IMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~----~~g-~~p-~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
..++++|-.+|...|++++|+.++++... .+| -.| ...+++-|=..|...|++++|+.++
T Consensus 340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~ 405 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKAL 405 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 36788999999999999999999988763 133 234 4456788999999999999999998
No 194
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=93.75 E-value=0.43 Score=36.12 Aligned_cols=83 Identities=7% Similarity=-0.046 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhc-cCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HH
Q 033770 15 VTFVAVLTACARARLVELGLELFHSLLGE-FEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SA 76 (112)
Q Consensus 15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~ 76 (112)
..|...+....+.|.++.|..+|++.... ....+.+....+.+.-.+ .++.+.|.++| | .-
T Consensus 435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~f 513 (679)
T 4e6h_A 435 YVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKYFATDGEYINKYLDF 513 (679)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 46888888888889999999999999862 112334444444444222 35589999998 3 33
Q ss_pred HHhhCChhHHHHHHHHHHhcCC
Q 033770 77 CKIHGAVKLSHEVGKRLLELQP 98 (112)
Q Consensus 77 ~~~~g~~~~a~~~~~~m~~~~~ 98 (112)
....|+.+.|..+|+......|
T Consensus 514 e~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 514 LIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHhCCCHHHHHHHHHHHHHhcC
Confidence 3457899999999999887555
No 195
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.43 E-value=0.56 Score=32.13 Aligned_cols=25 Identities=4% Similarity=-0.134 Sum_probs=16.9
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhh
Q 033770 17 FVAVLTACARARLVELGLELFHSLL 41 (112)
Q Consensus 17 ~~~li~~~~~~~~~~~a~~~~~~m~ 41 (112)
+..+...|.+.|++++|...+....
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5566677777777777777666654
No 196
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=93.33 E-value=0.32 Score=34.58 Aligned_cols=60 Identities=20% Similarity=0.110 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhh----ccC-CCc-CHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLG----EFE-VVP-IMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~----~~g-~~p-~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
..+++.|..+|...|++++|+.++++... .+| -.| ...+++-|-..|...|++++|++++
T Consensus 329 ~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~ 394 (429)
T 3qwp_A 329 LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNL 394 (429)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 45788899999999999999999987763 123 334 4456788899999999999999998
No 197
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=93.29 E-value=0.9 Score=28.45 Aligned_cols=41 Identities=12% Similarity=-0.074 Sum_probs=23.2
Q ss_pred cHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHh----cCChhHHHHHH
Q 033770 29 LVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGR----AGLLSEANEFL 73 (112)
Q Consensus 29 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~f 73 (112)
+.++|...|++... .| +...+..|=..|.+ .+++++|.+.|
T Consensus 68 ~~~~A~~~~~~A~~-~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 112 (212)
T 3rjv_A 68 DYPQARQLAEKAVE-AG---SKSGEIVLARVLVNRQAGATDVAHAITLL 112 (212)
T ss_dssp CHHHHHHHHHHHHH-TT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCccCHHHHHHHH
Confidence 66666666666653 33 34445555555554 56666666665
No 198
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=93.22 E-value=0.28 Score=29.93 Aligned_cols=44 Identities=16% Similarity=0.131 Sum_probs=33.8
Q ss_pred cHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 29 LVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 29 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
|.-+..+-+..+-. +.+.|++.+..+.++++-|..++--|.++|
T Consensus 68 D~wElrrglN~l~~-~DlVPeP~Ii~AALrAcRRvNDfalAVR~l 111 (152)
T 2y69_E 68 DAWELRKGMNTLVG-YDLVPEPKIIDAALRACRRLNDFASAVRIL 111 (152)
T ss_dssp CHHHHHHHHHHHTT-SSBCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44455566666665 778888888888888888888888888887
No 199
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=93.19 E-value=0.67 Score=32.90 Aligned_cols=58 Identities=10% Similarity=-0.004 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
...|..+=.++.+.|++++|+..+++... .. ..+...|.-+-.+|.+.|++++|.+.|
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~-~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~ 374 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALG-LD-SANEKGLYRRGEAQLLMNEFESAKGDF 374 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cC-CccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 57888888999999999999999999885 22 237888889999999999999999999
No 200
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.12 E-value=0.59 Score=25.86 Aligned_cols=28 Identities=11% Similarity=-0.069 Sum_probs=20.1
Q ss_pred HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770 75 SACKIHGAVKLSHEVGKRLLELQPEHCR 102 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 102 (112)
..+-+.|++++|...|+.+.+..|.++.
T Consensus 51 ~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 51 NDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 4556778888888888888877776433
No 201
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=92.87 E-value=0.56 Score=30.94 Aligned_cols=68 Identities=12% Similarity=-0.067 Sum_probs=48.2
Q ss_pred HhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH---------------H----HHHHhhCChh
Q 033770 24 CARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL---------------W----SACKIHGAVK 84 (112)
Q Consensus 24 ~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f---------------~----~~~~~~g~~~ 84 (112)
+.+.++.+.|...+++... . -+.+...+..+-..|.+.|++++|.+.| | ..+...|+.+
T Consensus 195 l~~~~~~~~a~~~l~~al~-~-~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVA-E-NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHhhcccCccHHHHHHHHh-c-CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 5566677778888877764 1 1236778888888999999999999988 1 5556666667
Q ss_pred HHHHHHHHH
Q 033770 85 LSHEVGKRL 93 (112)
Q Consensus 85 ~a~~~~~~m 93 (112)
.|...+++-
T Consensus 273 ~a~~~~r~a 281 (287)
T 3qou_A 273 ALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 766666554
No 202
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.73 E-value=0.71 Score=25.73 Aligned_cols=58 Identities=7% Similarity=-0.075 Sum_probs=40.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhcc-----CCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 16 TFVAVLTACARARLVELGLELFHSLLGEF-----EVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~-----g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
-.-.|=..+.+.++++.|...++...+.. +-.+....+..|-.+|.+.|++++|.+.+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~ 69 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLT 69 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 34455566778899999999998877521 12245566777777777777777777765
No 203
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=92.60 E-value=1.9 Score=30.39 Aligned_cols=43 Identities=5% Similarity=-0.100 Sum_probs=20.0
Q ss_pred cCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHh----cCChhHHHHHH
Q 033770 27 ARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGR----AGLLSEANEFL 73 (112)
Q Consensus 27 ~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~f 73 (112)
.++.++|...+++... .| +...+..+-..|.. .+++++|.++|
T Consensus 200 ~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 200 ERNDAISAQWYRKSAT-SG---DELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp CCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 4555555555555443 22 23344444444443 45555555554
No 204
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=92.50 E-value=0.75 Score=28.45 Aligned_cols=58 Identities=17% Similarity=0.033 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhcc-----CCCc-CHHHH----HHHHHHHHhcCChhHHHHHH
Q 033770 15 VTFVAVLTACARARLVELGLELFHSLLGEF-----EVVP-IMEHY----GCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~-----g~~p-~~~~~----~~li~~~~~~g~~~~A~~~f 73 (112)
..|+.+=.++.+.|++++|+..+++... . -+.| +...| .-.=.++...|++++|.+-|
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~-l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y 125 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALH-YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEF 125 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH-hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHH
Confidence 3899999999999999999999999875 2 1256 45566 77778899999999999997
No 205
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=91.35 E-value=1.2 Score=31.39 Aligned_cols=54 Identities=13% Similarity=0.162 Sum_probs=33.1
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHH---------H-------HHHHhhCChhHHHHHHHHHHhcCCCCC
Q 033770 48 PIMEHYGCVVDLLGRAGLLSEANEFL---------W-------SACKIHGAVKLSHEVGKRLLELQPEHC 101 (112)
Q Consensus 48 p~~~~~~~li~~~~~~g~~~~A~~~f---------~-------~~~~~~g~~~~a~~~~~~m~~~~~~~~ 101 (112)
.+...|.++-..+.-.|++++|.+.+ | ..+...|+.++|.+.+++...++|..+
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 35555555544444456666666666 2 444566777777777777777777554
No 206
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=91.22 E-value=0.78 Score=34.15 Aligned_cols=29 Identities=21% Similarity=0.208 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhh
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLL 41 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~ 41 (112)
+...|..|=..+.+.++++.|.+.|.++.
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 34455555555555555555555555543
No 207
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=90.88 E-value=2.1 Score=31.84 Aligned_cols=44 Identities=11% Similarity=-0.027 Sum_probs=32.2
Q ss_pred HHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 23 ACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 23 ~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
...+.|+++.|.++-..+. +...|..|-+.+.+.|+++.|++.|
T Consensus 661 ~~l~~~~~~~A~~~~~~~~-------~~~~W~~la~~al~~~~~~~A~~~y 704 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES-------AEMKWRALGDASLQRFNFKLAIEAF 704 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC-------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC-------cHhHHHHHHHHHHHcCCHHHHHHHH
Confidence 3456788888888766554 3467777888888888888888777
No 208
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=90.71 E-value=3.6 Score=30.23 Aligned_cols=94 Identities=13% Similarity=0.043 Sum_probs=71.1
Q ss_pred CCHHHHHHHHHHHhccC--cHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcC-ChhHHHHHH-------------H-
Q 033770 12 ANEVTFVAVLTACARAR--LVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAG-LLSEANEFL-------------W- 74 (112)
Q Consensus 12 p~~~t~~~li~~~~~~~--~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~f-------------~- 74 (112)
-+..+|+.--....+.+ +++++...++++.+ ... -|...|+---....+.| .++++.+.+ |
T Consensus 105 K~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~-~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~ 182 (567)
T 1dce_A 105 KSYGTWHHRCWLLSRLPEPNWARELELCARFLE-ADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH 182 (567)
T ss_dssp TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH-HCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHH
T ss_pred CCHHHHHHHHHHHHHcccccHHHHHHHHHHHHh-hcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHH
Confidence 36677777777777888 77999999999986 332 37888887777778888 888998887 5
Q ss_pred ---HHHHh--------------hCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770 75 ---SACKI--------------HGAVKLSHEVGKRLLELQPEHCRRYVVL 107 (112)
Q Consensus 75 ---~~~~~--------------~g~~~~a~~~~~~m~~~~~~~~~~~~~l 107 (112)
..+.+ .+..+++.+.+++....+|.+.+.+..+
T Consensus 183 ~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~ 232 (567)
T 1dce_A 183 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYH 232 (567)
T ss_dssp HHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHH
T ss_pred HHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 22222 1457889999998888999998876644
No 209
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=90.03 E-value=1.5 Score=24.32 Aligned_cols=55 Identities=22% Similarity=0.192 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHH--------------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcc
Q 033770 49 IMEHYGCVVDLLGRAGLLSEANEFL--------------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRR 103 (112)
Q Consensus 49 ~~~~~~~li~~~~~~g~~~~A~~~f--------------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 103 (112)
+..-+-.|=..+-+.|+++.|...| + .++.+.|+.+.|...+++..+..|+++..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 3445556666777777777777777 1 77888999999999999999999987553
No 210
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=87.45 E-value=0.23 Score=30.73 Aligned_cols=29 Identities=10% Similarity=0.074 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHhcCCCCCcchhhhhccc
Q 033770 83 VKLSHEVGKRLLELQPEHCRRYVVLSNVH 111 (112)
Q Consensus 83 ~~~a~~~~~~m~~~~~~~~~~~~~l~~~y 111 (112)
+++|...|++..+++|+....+.-+-++|
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 45999999999999999877666555443
No 211
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=86.96 E-value=3.9 Score=27.95 Aligned_cols=67 Identities=18% Similarity=0.218 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhhhccCCCcC---HHHHHHHHHHHHhc-----CChhHHHHHH-----------------H-HHHHh-hCC
Q 033770 30 VELGLELFHSLLGEFEVVPI---MEHYGCVVDLLGRA-----GLLSEANEFL-----------------W-SACKI-HGA 82 (112)
Q Consensus 30 ~~~a~~~~~~m~~~~g~~p~---~~~~~~li~~~~~~-----g~~~~A~~~f-----------------~-~~~~~-~g~ 82 (112)
+..|...+++..+ +-|+ ...|..|-..|.+. |+.++|.+.| | +.+++ .|+
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 4566666666553 4455 56889999999995 9999999999 2 66666 499
Q ss_pred hhHHHHHHHHHHhcCCC
Q 033770 83 VKLSHEVGKRLLELQPE 99 (112)
Q Consensus 83 ~~~a~~~~~~m~~~~~~ 99 (112)
.+.+.+.+++.....|.
T Consensus 256 ~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 256 RAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 99999999999986665
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=86.81 E-value=1.9 Score=30.39 Aligned_cols=60 Identities=8% Similarity=0.055 Sum_probs=43.8
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
+.+..+|..+--.+...|++++|...+++... .. |+...|..+=..+.-.|++++|.+.|
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~-Ln--~s~~a~~llG~~~~~~G~~~eA~e~~ 333 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGID-LE--MSWLNYVLLGKVYEMKGMNREAADAY 333 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HC--CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-cC--CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45666666665555566888888888888875 44 77777767777778888888888876
No 213
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=86.13 E-value=3.7 Score=24.34 Aligned_cols=29 Identities=10% Similarity=0.067 Sum_probs=22.0
Q ss_pred HHHHhhCChhHHHHHHHHHHhcCCCCCcc
Q 033770 75 SACKIHGAVKLSHEVGKRLLELQPEHCRR 103 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 103 (112)
-++.+.|+.++|.+.++.+.+.+|.+.-.
T Consensus 82 vg~yklg~Y~~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 82 VGNYRLKEYEKALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Confidence 67777888888888888888878876443
No 214
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.57 E-value=3.7 Score=23.71 Aligned_cols=53 Identities=19% Similarity=0.223 Sum_probs=42.2
Q ss_pred HhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHH
Q 033770 5 MYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDL 59 (112)
Q Consensus 5 M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~ 59 (112)
+-...+.|+.....+.|+||-+.+++..|.++|+..+. ++.+...+|..++.-
T Consensus 36 l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~--K~~~~~~iY~~~lqE 88 (109)
T 1v54_E 36 LVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD--KAGPHKEIYPYVIQE 88 (109)
T ss_dssp HTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTTCTTHHHHHHHH
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HhcCchhhHHHHHHH
Confidence 33456889999999999999999999999999999885 344445567776653
No 215
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.55 E-value=3.6 Score=28.73 Aligned_cols=53 Identities=11% Similarity=-0.135 Sum_probs=42.9
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 19 AVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 19 ~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
.++.++...|+.+++.......... -+-+-..|-.+|.+|.+.|+..+|.+.|
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y 228 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAY 228 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4566677889999999888887642 2227778999999999999999999998
No 216
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=84.97 E-value=8.5 Score=27.65 Aligned_cols=66 Identities=17% Similarity=0.128 Sum_probs=48.3
Q ss_pred CcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH---------H---HHH-HhhCChhHHHHHHHHHH
Q 033770 28 RLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL---------W---SAC-KIHGAVKLSHEVGKRLL 94 (112)
Q Consensus 28 ~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f---------~---~~~-~~~g~~~~a~~~~~~m~ 94 (112)
++.+.|..+|+...+..+ -+...|...++...+.|+.+.|..+| | ..+ ...|+.+.+..+++...
T Consensus 334 ~d~~~ar~ife~al~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 334 GSRATPYNIFSSGLLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLEKTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp CCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSCCBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 368899999998876332 23445667788788889999999777 4 222 45699999999888876
Q ss_pred h
Q 033770 95 E 95 (112)
Q Consensus 95 ~ 95 (112)
.
T Consensus 412 ~ 412 (493)
T 2uy1_A 412 D 412 (493)
T ss_dssp H
T ss_pred H
Confidence 4
No 217
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=84.17 E-value=7.7 Score=26.25 Aligned_cols=78 Identities=10% Similarity=0.048 Sum_probs=57.5
Q ss_pred CcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChh--HHHHHH-------------H--HHH--HhhCC------
Q 033770 28 RLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLS--EANEFL-------------W--SAC--KIHGA------ 82 (112)
Q Consensus 28 ~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~--~A~~~f-------------~--~~~--~~~g~------ 82 (112)
+++++++.+++.+.. .-+-+...|+----.+.+.|+++ ++.+.+ | +++ ...+.
T Consensus 124 ~~~~~EL~~~~~~l~--~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLS--SDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhh
Confidence 788999999999985 22337888887777777888888 888877 5 332 22333
Q ss_pred hhHHHHHHHHHHhcCCCCCcchhhh
Q 033770 83 VKLSHEVGKRLLELQPEHCRRYVVL 107 (112)
Q Consensus 83 ~~~a~~~~~~m~~~~~~~~~~~~~l 107 (112)
.+++.+.+++....+|.+.+.+..+
T Consensus 202 ~~eEl~~~~~aI~~~p~n~SaW~y~ 226 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQNPSTWNYL 226 (306)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccHHHHH
Confidence 7788888888888999987766543
No 218
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=83.80 E-value=9.9 Score=27.32 Aligned_cols=75 Identities=19% Similarity=0.120 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHH--HHHHHHHhcCChhHHHHHH-------------H----H
Q 033770 15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYG--CVVDLLGRAGLLSEANEFL-------------W----S 75 (112)
Q Consensus 15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~--~li~~~~~~g~~~~A~~~f-------------~----~ 75 (112)
..|...+.-.-+.+.++.|..+|++. +..+. +...|. +.+.... .++.+.|.++| | .
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~--~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~~~~~~~~~~yid 362 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNEGV--GPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKHPDSTLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCC--CHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCC--ChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 45666677666778899999999998 32333 334443 4444332 23689999998 2 2
Q ss_pred HHHhhCChhHHHHHHHHH
Q 033770 76 ACKIHGAVKLSHEVGKRL 93 (112)
Q Consensus 76 ~~~~~g~~~~a~~~~~~m 93 (112)
-....|+.+.|..+|+..
T Consensus 363 ~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHTCHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 234567888888887764
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=83.30 E-value=5.9 Score=24.24 Aligned_cols=75 Identities=11% Similarity=-0.086 Sum_probs=56.2
Q ss_pred cCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcC---ChhHHHHHH----------------H---HHHHhhCChh
Q 033770 27 ARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAG---LLSEANEFL----------------W---SACKIHGAVK 84 (112)
Q Consensus 27 ~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~f----------------~---~~~~~~g~~~ 84 (112)
...+..+.+-+..... .|. ++..+.--+-.++++++ +++++.++| | -++.+.|+.+
T Consensus 11 ~~~l~~~~~~y~~e~~-~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKA-AGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHHHH-TTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHHc-cCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHH
Confidence 3455666666666554 344 67777777777888887 666888777 2 7889999999
Q ss_pred HHHHHHHHHHhcCCCCCcc
Q 033770 85 LSHEVGKRLLELQPEHCRR 103 (112)
Q Consensus 85 ~a~~~~~~m~~~~~~~~~~ 103 (112)
+|.+.++.+.+.+|++.-.
T Consensus 89 ~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 89 KALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHhcCCCCHHH
Confidence 9999999999999987543
No 220
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=82.71 E-value=1.5 Score=25.74 Aligned_cols=37 Identities=8% Similarity=-0.102 Sum_probs=20.0
Q ss_pred HHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 36 LFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 36 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
+|+.+.+ ..+.|++..--.-|......++++.|.++.
T Consensus 48 LfdkLn~-~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih 84 (118)
T 2yru_A 48 LREQWAG-GKLSIPVKKRMALLVQELLHHQWDAADDIH 84 (118)
T ss_dssp HHHHHHH-TCSCHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHhc-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4444443 455555444444444455666777776665
No 221
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=81.22 E-value=9 Score=28.15 Aligned_cols=75 Identities=15% Similarity=0.083 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcC--ChhHHHHHH-------------H----HHHHhhC-ChhHHHHH
Q 033770 30 VELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAG--LLSEANEFL-------------W----SACKIHG-AVKLSHEV 89 (112)
Q Consensus 30 ~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~f-------------~----~~~~~~g-~~~~a~~~ 89 (112)
+++++..++.+.+. . +-+...|+---..+.+.| +++++.+.+ | -.....| ..+++.+.
T Consensus 89 ~~~eL~~~~~~l~~-~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRV-N-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHH
Confidence 89999999999852 2 227778877777778888 779999998 5 3344556 77889999
Q ss_pred HHHHHhcCCCCCcchhh
Q 033770 90 GKRLLELQPEHCRRYVV 106 (112)
Q Consensus 90 ~~~m~~~~~~~~~~~~~ 106 (112)
++++.+.+|.+.+.+.-
T Consensus 167 ~~~~I~~~p~n~saW~~ 183 (567)
T 1dce_A 167 TDSLITRNFSNYSSWHY 183 (567)
T ss_dssp HHTTTTTTCCCHHHHHH
T ss_pred HHHHHHHCCCCccHHHH
Confidence 89888888988776553
No 222
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=80.61 E-value=12 Score=26.19 Aligned_cols=13 Identities=8% Similarity=0.036 Sum_probs=6.8
Q ss_pred CcHHHHHHHHHHh
Q 033770 28 RLVELGLELFHSL 40 (112)
Q Consensus 28 ~~~~~a~~~~~~m 40 (112)
++.++|...|++.
T Consensus 231 ~d~~~A~~~~~~a 243 (452)
T 3e4b_A 231 PDEKTAQALLEKI 243 (452)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 4555555555554
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=79.90 E-value=7 Score=26.74 Aligned_cols=82 Identities=15% Similarity=-0.016 Sum_probs=61.5
Q ss_pred CCCC---HHHHHHHHHHHhcc-----CcHHHHHHHHHHhhhccCCCc--CHHHHHHHHHHHHhc-CChhHHHHHHH----
Q 033770 10 LRAN---EVTFVAVLTACARA-----RLVELGLELFHSLLGEFEVVP--IMEHYGCVVDLLGRA-GLLSEANEFLW---- 74 (112)
Q Consensus 10 ~~p~---~~t~~~li~~~~~~-----~~~~~a~~~~~~m~~~~g~~p--~~~~~~~li~~~~~~-g~~~~A~~~f~---- 74 (112)
+.|+ -..|+++-..|.+. |+.++|.+.|++... +.| +..++...-+.+++. |+.++|.+.+=
T Consensus 192 LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~ 268 (301)
T 3u64_A 192 LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRALA 268 (301)
T ss_dssp HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 4555 55788888889984 999999999999875 456 478888888999995 99999999981
Q ss_pred --------HHHHhhCChhHHHHHHHHHH
Q 033770 75 --------SACKIHGAVKLSHEVGKRLL 94 (112)
Q Consensus 75 --------~~~~~~g~~~~a~~~~~~m~ 94 (112)
......+.-.+|..+++++.
T Consensus 269 a~p~~~P~~~lan~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 269 IDPESVPHNKLLVILSQKRARWLKAHVQ 296 (301)
T ss_dssp CCGGGCSSCHHHHHHHHHHHHHHHHTHH
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHhH
Confidence 33444455566666665543
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=79.74 E-value=9 Score=24.05 Aligned_cols=80 Identities=9% Similarity=0.138 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCC-------cCHHH-------------HHHHHHHHHhcCChhHHHHH
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVV-------PIMEH-------------YGCVVDLLGRAGLLSEANEF 72 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~-------p~~~~-------------~~~li~~~~~~g~~~~A~~~ 72 (112)
+...|..|=...-+.|+++-|.+.|.+... .+-. -|... +|.-...+--.|+++++.++
T Consensus 33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~af~~~l~lGdv~~~i~l 111 (177)
T 3mkq_B 33 DSITWERLIQEALAQGNASLAEMIYQTQHS-FDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSI 111 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-HHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHhCC-HHHHHHHHHHhCCHHHHHHHHHHHHHCccHHHHHHHHHHcCCHHHHHHH
Confidence 567788888888888888888888777653 2110 01111 33334445556777777777
Q ss_pred H-----H----HHHHhhCChhHHHHHHHHH
Q 033770 73 L-----W----SACKIHGAVKLSHEVGKRL 93 (112)
Q Consensus 73 f-----~----~~~~~~g~~~~a~~~~~~m 93 (112)
+ | -....+|..+.|.++.+++
T Consensus 112 L~~~~r~~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 112 FAEGGSLPLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHTTCHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHCCChHHHHHHHHHcCcHHHHHHHHHHh
Confidence 6 3 1112345666777776655
No 225
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=77.80 E-value=4.5 Score=28.22 Aligned_cols=44 Identities=11% Similarity=0.056 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh----ccCCCcCHHHHH
Q 033770 11 RANEVTFVAVLTACARARLVELGLELFHSLLG----EFEVVPIMEHYG 54 (112)
Q Consensus 11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~----~~g~~p~~~~~~ 54 (112)
+.+...|-.+|.++...|+..+|++.|++..+ +.|+.|...+-.
T Consensus 202 P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 202 PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 34777899999999999999999999998764 579999876544
No 226
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=77.20 E-value=18 Score=27.96 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=22.7
Q ss_pred HHhhCChhHHHHHHHHHHhcCCCCCcchhhhhccc
Q 033770 77 CKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNVH 111 (112)
Q Consensus 77 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~y 111 (112)
|...|+.+.|+++.++.....|.+..++..|+..|
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vY 381 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELALDSFESWYNLARCH 381 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 44556777777777777666676666666665544
No 227
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=76.46 E-value=11 Score=23.05 Aligned_cols=34 Identities=18% Similarity=0.203 Sum_probs=20.2
Q ss_pred cCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhh
Q 033770 8 KGLRANEVTFVAVLTACARARLVELGLELFHSLL 41 (112)
Q Consensus 8 ~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~ 41 (112)
..+.|+.....+.|+||-+.+|+..|.++|+..+
T Consensus 82 ~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 82 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3455666666666666666666666666666555
No 228
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=76.13 E-value=15 Score=24.75 Aligned_cols=83 Identities=4% Similarity=-0.036 Sum_probs=41.8
Q ss_pred HHHHHHHHhccC--cHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHH----Hhc---CChhHHHHHH-------------
Q 033770 17 FVAVLTACARAR--LVELGLELFHSLLGEFEVVP-IMEHYGCVVDLL----GRA---GLLSEANEFL------------- 73 (112)
Q Consensus 17 ~~~li~~~~~~~--~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~----~~~---g~~~~A~~~f------------- 73 (112)
|+.-=......+ ++++++..++.+... .| +...|+---..+ .+. ++++++.+++
T Consensus 70 Wn~R~~~L~~l~~~~~~eeL~~~~~~L~~---nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~a 146 (306)
T 3dra_A 70 WIYRFNILKNLPNRNLYDELDWCEEIALD---NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHV 146 (306)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHH---CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHH---CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHH
Confidence 443333333444 666666666666541 22 344444222222 333 5666666665
Q ss_pred H----HHHHhhCChh--HHHHHHHHHHhcCCCCCc
Q 033770 74 W----SACKIHGAVK--LSHEVGKRLLELQPEHCR 102 (112)
Q Consensus 74 ~----~~~~~~g~~~--~a~~~~~~m~~~~~~~~~ 102 (112)
| -...+.|..+ ++.+.++++.+.+|.+.+
T Consensus 147 W~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~s 181 (306)
T 3dra_A 147 WSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNS 181 (306)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHH
Confidence 3 2333445555 666666666666665544
No 229
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=75.65 E-value=18 Score=25.35 Aligned_cols=78 Identities=15% Similarity=0.110 Sum_probs=53.1
Q ss_pred HHHHHHHHHhccC---cHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhc----CChhHHHHHH----------H----
Q 033770 16 TFVAVLTACARAR---LVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRA----GLLSEANEFL----------W---- 74 (112)
Q Consensus 16 t~~~li~~~~~~~---~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~~f----------~---- 74 (112)
.+..|=..|.+.| +.++|...|++... .|. ++...+..|-..|.+. +++++|.+.| +
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~-~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg 255 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVS-RGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLA 255 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-TTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHH-CCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHH
Confidence 6666777777788 89999999998875 453 4444444555555444 6888888877 1
Q ss_pred HH-H--HhhCChhHHHHHHHHHHh
Q 033770 75 SA-C--KIHGAVKLSHEVGKRLLE 95 (112)
Q Consensus 75 ~~-~--~~~g~~~~a~~~~~~m~~ 95 (112)
.. + ...++.++|.+.|++..+
T Consensus 256 ~~~~~~~~~~d~~~A~~~~~~Aa~ 279 (452)
T 3e4b_A 256 QLLYDFPELGDVEQMMKYLDNGRA 279 (452)
T ss_dssp HHHHHSGGGCCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHH
Confidence 22 2 446788888888887664
No 230
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=73.54 E-value=19 Score=24.68 Aligned_cols=92 Identities=13% Similarity=0.057 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHHhccC--cHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCC-hhHHHHHH-------------H-
Q 033770 12 ANEVTFVAVLTACARAR--LVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGL-LSEANEFL-------------W- 74 (112)
Q Consensus 12 p~~~t~~~li~~~~~~~--~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~f-------------~- 74 (112)
-|..+|+.--....+.+ ++++++.+++++.. .. +-|...|+----...+.|. ++++.+.+ |
T Consensus 106 Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~-~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~ 183 (331)
T 3dss_A 106 KSYGTWHHRCWLLSRLPEPNWARELELCARFLE-AD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH 183 (331)
T ss_dssp TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 36677776555555666 48899999999885 22 2377788766666677787 57888877 4
Q ss_pred ---HHHHhh--------------CChhHHHHHHHHHHhcCCCCCcchh
Q 033770 75 ---SACKIH--------------GAVKLSHEVGKRLLELQPEHCRRYV 105 (112)
Q Consensus 75 ---~~~~~~--------------g~~~~a~~~~~~m~~~~~~~~~~~~ 105 (112)
...... +..+++.+.++......|.+.+.+.
T Consensus 184 ~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~ 231 (331)
T 3dss_A 184 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWF 231 (331)
T ss_dssp HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 112222 3467888888888888999887665
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=73.38 E-value=13 Score=22.83 Aligned_cols=59 Identities=14% Similarity=-0.001 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
+..-++-.|+...+.|.-|.-..+...+.. .-+|+....-.+-.+|.+.|+..+|.+++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 344455666777777777776666666432 44566777777778888888888888875
No 232
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=72.61 E-value=20 Score=24.56 Aligned_cols=89 Identities=20% Similarity=0.141 Sum_probs=62.3
Q ss_pred CCCHHHHHHHHHHHhccCc-HHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhc--------------CChhHHHHHH--
Q 033770 11 RANEVTFVAVLTACARARL-VELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRA--------------GLLSEANEFL-- 73 (112)
Q Consensus 11 ~p~~~t~~~li~~~~~~~~-~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~--------------g~~~~A~~~f-- 73 (112)
+-|...|+.---...+.|. .++++..++.+.. ..+ -|...|+-.-..+.+. +.++++.+.+
T Consensus 141 prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~-~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ 218 (331)
T 3dss_A 141 ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT-RNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQN 218 (331)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-HCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-HCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHH
Confidence 3477788876666677777 6899999999986 333 3777887555555444 4577888887
Q ss_pred -----------H---HHHHhh------------CChhHHHHHHHHHHhcCCCCC
Q 033770 74 -----------W---SACKIH------------GAVKLSHEVGKRLLELQPEHC 101 (112)
Q Consensus 74 -----------~---~~~~~~------------g~~~~a~~~~~~m~~~~~~~~ 101 (112)
| .+.... +..+++.+.++++.+..|++.
T Consensus 219 ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~ 272 (331)
T 3dss_A 219 AFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENK 272 (331)
T ss_dssp HHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccc
Confidence 4 222222 357899999999999999763
No 233
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=72.39 E-value=21 Score=24.70 Aligned_cols=81 Identities=17% Similarity=0.169 Sum_probs=56.6
Q ss_pred HHHHh-ccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcC-ChhHHHHHH-------------H----HHHHhh
Q 033770 21 LTACA-RARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAG-LLSEANEFL-------------W----SACKIH 80 (112)
Q Consensus 21 i~~~~-~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g-~~~~A~~~f-------------~----~~~~~~ 80 (112)
+.+.. +.+..++|+.+.+.+.. +.| +...||.-=..+...| .++++.+++ | ..+...
T Consensus 60 ~r~~~~~~e~se~AL~lt~~~L~---~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l 136 (349)
T 3q7a_A 60 FRAIAAKEEKSERALELTEIIVR---MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRI 136 (349)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHH---hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 33333 44445789999999875 345 5566776666666677 599999998 5 333333
Q ss_pred -C-ChhHHHHHHHHHHhcCCCCCcch
Q 033770 81 -G-AVKLSHEVGKRLLELQPEHCRRY 104 (112)
Q Consensus 81 -g-~~~~a~~~~~~m~~~~~~~~~~~ 104 (112)
+ +.+++.++++++.+.+|.+...+
T Consensus 137 ~~~~~~~EL~~~~k~L~~dpkNy~AW 162 (349)
T 3q7a_A 137 SPQDPVSEIEYIHGSLLPDPKNYHTW 162 (349)
T ss_dssp CCSCCHHHHHHHHHHTSSCTTCHHHH
T ss_pred cCCChHHHHHHHHHHHHhCCCCHHHH
Confidence 5 78999999999998888775543
No 234
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=71.35 E-value=23 Score=24.57 Aligned_cols=91 Identities=10% Similarity=0.090 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHhccC-cHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhc-C-ChhHHHHHH-------------H--
Q 033770 13 NEVTFVAVLTACARAR-LVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRA-G-LLSEANEFL-------------W-- 74 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~-~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~-g-~~~~A~~~f-------------~-- 74 (112)
+...|+.-=......| ++++++.+++.+.. .-+-+...|+---..+.+. + +++++.+++ |
T Consensus 87 ~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~--~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~ 164 (349)
T 3q7a_A 87 HYTVWQYRFSLLTSLNKSLEDELRLMNEFAV--QNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAY 164 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4445665444445566 59999999999985 2333777888766666666 6 888999988 5
Q ss_pred --HHHHhhCChh--------HHHHHHHHHHhcCCCCCcchh
Q 033770 75 --SACKIHGAVK--------LSHEVGKRLLELQPEHCRRYV 105 (112)
Q Consensus 75 --~~~~~~g~~~--------~a~~~~~~m~~~~~~~~~~~~ 105 (112)
-...+.|..+ ++.+..+++.+.+|.+.+.+.
T Consensus 165 R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~ 205 (349)
T 3q7a_A 165 LHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWG 205 (349)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 2233344555 899999999998888766443
No 235
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=70.44 E-value=14 Score=22.96 Aligned_cols=36 Identities=8% Similarity=-0.000 Sum_probs=21.3
Q ss_pred HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhccc
Q 033770 75 SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNVH 111 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~y 111 (112)
.+|.+.++.++|..+++.+... -..+....+|.++|
T Consensus 130 ~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 130 ECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANLY 165 (167)
T ss_dssp HHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHHC
T ss_pred HHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHHh
Confidence 6677778888888776655321 12344455555555
No 236
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=70.15 E-value=13 Score=21.37 Aligned_cols=74 Identities=7% Similarity=-0.071 Sum_probs=54.9
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHh----cCChhHHHHHH------------H---HHHHh-
Q 033770 20 VLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGR----AGLLSEANEFL------------W---SACKI- 79 (112)
Q Consensus 20 li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~f------------~---~~~~~- 79 (112)
|=..|...+.+++|...|++... .| +...+..|=..|.+ .+++++|.+.| + ..|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~-~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACE-LN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAG 106 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHc-CC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHCC
Confidence 44455566778889999998885 44 56677777777777 78999999998 1 44444
Q ss_pred ---hCChhHHHHHHHHHHhcC
Q 033770 80 ---HGAVKLSHEVGKRLLELQ 97 (112)
Q Consensus 80 ---~g~~~~a~~~~~~m~~~~ 97 (112)
.++.++|.+.+++..+.+
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCcCHHHHHHHHHHHHHCC
Confidence 678999999999887643
No 237
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=70.15 E-value=22 Score=23.94 Aligned_cols=50 Identities=18% Similarity=0.161 Sum_probs=37.6
Q ss_pred HHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 22 TACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 22 ~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
....+.|.+++++.-...-++. -+-|...=..++..+|-.|+++.|.+-+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL 54 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQL 54 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4556788888888777776652 2236666678999999999999998877
No 238
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=66.67 E-value=15 Score=24.04 Aligned_cols=45 Identities=13% Similarity=0.181 Sum_probs=31.2
Q ss_pred cHHHHHHHHHHhhhccCCCcCHHH------HHHHHHHHHhcCChhHHHHHH
Q 033770 29 LVELGLELFHSLLGEFEVVPIMEH------YGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 29 ~~~~a~~~~~~m~~~~g~~p~~~~------~~~li~~~~~~g~~~~A~~~f 73 (112)
-++.|..+++.+..+..+..+.+- =-..+-.|.+.|.+++|.++|
T Consensus 87 PLESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiL 137 (235)
T 3bu8_A 87 PLESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKIL 137 (235)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 378999999999875433222211 124556788999999999998
No 239
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=65.04 E-value=17 Score=20.83 Aligned_cols=57 Identities=4% Similarity=-0.161 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHhc----cCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHh----cCChhHHHHHH
Q 033770 13 NEVTFVAVLTACAR----ARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGR----AGLLSEANEFL 73 (112)
Q Consensus 13 ~~~t~~~li~~~~~----~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~f 73 (112)
+...+..|=..|.. .++.++|...|++... .| +...+..|=..|.+ .+++++|.+.|
T Consensus 56 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~-~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 120 (138)
T 1klx_A 56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACG-LN---DQDGCLILGYKQYAGKGVVKNEKQAVKTF 120 (138)
T ss_dssp CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHc-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence 44555555555555 7899999999999886 54 46777778788888 89999999986
No 240
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=64.88 E-value=0.95 Score=33.66 Aligned_cols=58 Identities=14% Similarity=0.088 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
|...|..+|.+..+.|.+++-...+.+.++ . .-+...=+.||-+|+|.+++.+-++++
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk-~--~ke~~IDteLi~ayAk~~rL~elEefl 139 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARK-K--ARESYVETELIFALAKTNRLAELEEFI 139 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTST-T--CCSTTTTHHHHHHHHTSCSSSTTTSTT
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-H--hcccccHHHHHHHHHhhCcHHHHHHHH
Confidence 666788999999999999998888866554 3 234555678999999999999988877
No 241
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=62.16 E-value=4.9 Score=29.96 Aligned_cols=45 Identities=13% Similarity=0.070 Sum_probs=22.9
Q ss_pred CcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 28 RLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 28 ~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
.+....+...+....+..+. +..--.-++..|.+.|-.+.|.++.
T Consensus 495 ~~~~~gr~~IselLpr~Pl~-Tndd~e~vL~iCa~l~L~~~ar~I~ 539 (570)
T 3f3f_C 495 GTRSAKKMVIAELLPHYPFV-TNDDIEWMLSICVEWRLPEIAKEIY 539 (570)
T ss_dssp SCHHHHHHHHHHHGGGCCCC-SHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cchhHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 33444444454444323332 2333445666666666666666665
No 242
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=61.53 E-value=16 Score=19.14 Aligned_cols=63 Identities=13% Similarity=0.184 Sum_probs=41.8
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHhccC-cHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChh
Q 033770 3 DEMYEKGLRANEVTFVAVLTACARAR-LVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLS 67 (112)
Q Consensus 3 ~~M~~~g~~p~~~t~~~li~~~~~~~-~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 67 (112)
+.|++.|++++.-- -.++......+ ..-.+.++.+.+.+ .+...+..|---.++.+.+.|-+.
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~-~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLID-MGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHH-hCCCCCHhhHHHHHHHHHHCCCeE
Confidence 34677788877655 35566666654 44566778888775 455566777777777777777654
No 243
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=61.48 E-value=20 Score=22.13 Aligned_cols=85 Identities=13% Similarity=0.146 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHhccCcH------HHHHHHHHHhhhccCCCcCHHH----HHHH-HH--HHHhcCChhHHHHHH------
Q 033770 13 NEVTFVAVLTACARARLV------ELGLELFHSLLGEFEVVPIMEH----YGCV-VD--LLGRAGLLSEANEFL------ 73 (112)
Q Consensus 13 ~~~t~~~li~~~~~~~~~------~~a~~~~~~m~~~~g~~p~~~~----~~~l-i~--~~~~~g~~~~A~~~f------ 73 (112)
|.-+|=..|.-.-+.|+. ++.+.++++... .++|+... |--| |. .+-..+++++|.++|
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 555666667777777887 888888888774 56665321 1100 00 123448888999988
Q ss_pred -------H----HHHHhhCChhHHHHHHHHHHhcCCC
Q 033770 74 -------W----SACKIHGAVKLSHEVGKRLLELQPE 99 (112)
Q Consensus 74 -------~----~~~~~~g~~~~a~~~~~~m~~~~~~ 99 (112)
| .==.+.|++..|.+++....++.|.
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 4 1114578999999999988887764
No 244
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=60.97 E-value=21 Score=20.84 Aligned_cols=63 Identities=16% Similarity=0.141 Sum_probs=43.4
Q ss_pred HHhhcCCCCCHHHHHHHHHHHhccC-cHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhH
Q 033770 4 EMYEKGLRANEVTFVAVLTACARAR-LVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSE 68 (112)
Q Consensus 4 ~M~~~g~~p~~~t~~~li~~~~~~~-~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 68 (112)
.|++.|++++.-=.. ++......+ ..-.|.++++.+++ .+...+..|----++.+.+.|-+.+
T Consensus 8 ~l~~~g~r~T~qR~~-Il~~L~~~~~~~~sa~ei~~~l~~-~~~~is~aTVYR~L~~L~e~Glv~~ 71 (136)
T 1mzb_A 8 ELRKAGLKVTLPRVK-ILQMLDSAEQRHMSAEDVYKALME-AGEDVGLATVYRVLTQFEAAGLVVR 71 (136)
T ss_dssp HHHHTTCCCCHHHHH-HHHHHHCC-CCSBCHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHCCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHh-hCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 466778877665543 455555555 56678999999986 5666677777777788888887654
No 245
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=60.31 E-value=18 Score=19.53 Aligned_cols=59 Identities=14% Similarity=0.023 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHhccCc---HHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHHH
Q 033770 12 ANEVTFVAVLTACARARL---VELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFLW 74 (112)
Q Consensus 12 p~~~t~~~li~~~~~~~~---~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f~ 74 (112)
+|.-.+..+=.++...++ .++|..++++... ..| ++.....+=..+.+.|++++|.+. |
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~---~dp~~~rA~~~lg~~~~~~g~y~~Ai~~-w 66 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ---LEPYNEAALSLIANDHFISFRFQEAIDT-W 66 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHH-H
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH---HCcCCHHHHHHHHHHHHHcCCHHHHHHH-H
Confidence 445555555555543333 6899999988774 335 555666677788999999999999 5
No 246
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=58.79 E-value=25 Score=20.68 Aligned_cols=81 Identities=12% Similarity=0.011 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHhccCcHH---HHHHHHHHhhhccCCCc-CH-HHHHHHHHHHHhcCChhHHHHHHHHHHHhhCChhHH
Q 033770 12 ANEVTFVAVLTACARARLVE---LGLELFHSLLGEFEVVP-IM-EHYGCVVDLLGRAGLLSEANEFLWSACKIHGAVKLS 86 (112)
Q Consensus 12 p~~~t~~~li~~~~~~~~~~---~a~~~~~~m~~~~g~~p-~~-~~~~~li~~~~~~g~~~~A~~~f~~~~~~~g~~~~a 86 (112)
|+.-+--.+-.+..++...+ ++..+++...+ .+ .| +. ...--|--++.|.|++++|.+.+=..+...-+-..|
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~-~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP-KG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT-TS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-cC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Confidence 44444444555666676654 59999999886 33 23 22 222355668999999999999872222333334555
Q ss_pred HHHHHHHH
Q 033770 87 HEVGKRLL 94 (112)
Q Consensus 87 ~~~~~~m~ 94 (112)
..+-+.+.
T Consensus 111 ~~Lk~~i~ 118 (126)
T 1nzn_A 111 KELERLID 118 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544443
No 247
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=58.46 E-value=13 Score=20.26 Aligned_cols=36 Identities=14% Similarity=0.075 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCC
Q 033770 29 LVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGL 65 (112)
Q Consensus 29 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 65 (112)
..++|...|..|..+.+|.|+ -+|.-.|...+.--+
T Consensus 15 t~eea~~~Fk~LL~e~~V~p~-~tWe~~~~~i~~DpR 50 (82)
T 2dod_A 15 PLEARMKQFKDMLLERGVSAF-STWEKELHKIVFDPR 50 (82)
T ss_dssp CHHHHHHHHHHHHHHTTCCSS-SCHHHHHHHHHTCSG
T ss_pred CHHHHHHHHHHHHHHcCcCCC-CCHHHHHHHHccCCc
Confidence 368899999999988999887 467766666554443
No 248
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.23 E-value=28 Score=25.68 Aligned_cols=51 Identities=12% Similarity=0.131 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHH-----------------H-----HHHHhhCChhHHHHHHHHHHhcCCCC
Q 033770 50 MEHYGCVVDLLGRAGLLSEANEFL-----------------W-----SACKIHGAVKLSHEVGKRLLELQPEH 100 (112)
Q Consensus 50 ~~~~~~li~~~~~~g~~~~A~~~f-----------------~-----~~~~~~g~~~~a~~~~~~m~~~~~~~ 100 (112)
...+|.|++.|.+.+.++.|.++. | +-....+++.+|.+.+....+..|.+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 466789999999999999999998 1 66677889999998888877655544
No 249
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=57.86 E-value=27 Score=20.66 Aligned_cols=63 Identities=14% Similarity=0.152 Sum_probs=39.2
Q ss_pred HHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhH
Q 033770 4 EMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSE 68 (112)
Q Consensus 4 ~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 68 (112)
.|++.|++++.-=.. ++......+..-.|.++++.+++ .+...+..|----++.+.+.|-+.+
T Consensus 12 ~l~~~g~r~T~qR~~-Il~~L~~~~~~~sa~ei~~~l~~-~~~~is~aTVYR~L~~L~e~Glv~~ 74 (145)
T 2fe3_A 12 TLKETGVRITPQRHA-ILEYLVNSMAHPTADDIYKALEG-KFPNMSVATVYNNLRVFRESGLVKE 74 (145)
T ss_dssp HHHHTTCCCCHHHHH-HHHHHHHCSSCCCHHHHHHHHGG-GCTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHHH-hCCCCChhhHHHHHHHHHHCCCEEE
Confidence 356677766654432 34444444555567888888875 4655666666666777777776544
No 250
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=56.29 E-value=25 Score=23.64 Aligned_cols=43 Identities=26% Similarity=0.191 Sum_probs=35.4
Q ss_pred HHHHhcCChhHHHHHH--------------H---HHHHhhCChhHHHHHHHHHHhcCCCC
Q 033770 58 DLLGRAGLLSEANEFL--------------W---SACKIHGAVKLSHEVGKRLLELQPEH 100 (112)
Q Consensus 58 ~~~~~~g~~~~A~~~f--------------~---~~~~~~g~~~~a~~~~~~m~~~~~~~ 100 (112)
....+.|++++|.+.. | .-+|-.|++++|..=++...+++|..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 4556778888888877 2 88899999999999999888888853
No 251
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=54.60 E-value=23 Score=27.35 Aligned_cols=47 Identities=11% Similarity=-0.064 Sum_probs=39.2
Q ss_pred HhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 24 CARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 24 ~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
+.+.|+++-|+.+-.+... +.| +-.+|-.|...|.+.|+++.|+=.+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~---~aPseF~tW~~La~vYi~l~d~e~ALLtL 394 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE---LALDSFESWYNLARCHIKKEEYEKALFAI 394 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhccCcHHHHHHHHHHHHh---cCchhhHHHHHHHHHHHHhccHHHHHHHH
Confidence 3357899999999888764 345 6899999999999999999999877
No 252
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=54.54 E-value=24 Score=20.96 Aligned_cols=62 Identities=16% Similarity=0.142 Sum_probs=42.1
Q ss_pred HHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhH
Q 033770 4 EMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSE 68 (112)
Q Consensus 4 ~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 68 (112)
.+++.|++++.-=- .++......+ .-.|.++++.+++ .+...+..|----++.+.+.|-+.+
T Consensus 9 ~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~-~~~~is~~TVYR~L~~L~e~Glv~~ 70 (145)
T 3eyy_A 9 DLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRK-TASGINISTVYRTLELLEELGLVSH 70 (145)
T ss_dssp HHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHT-TCTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHh-hCCCCCHhHHHHHHHHHHHCCcEEE
Confidence 45667888766543 2344444445 4578999999986 5766777777667788888887654
No 253
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.40 E-value=28 Score=24.54 Aligned_cols=80 Identities=11% Similarity=-0.010 Sum_probs=55.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhc-cCCCcCHHHHHHHHHHHHhcCChhHHHHHH------------H--------
Q 033770 16 TFVAVLTACARARLVELGLELFHSLLGE-FEVVPIMEHYGCVVDLLGRAGLLSEANEFL------------W-------- 74 (112)
Q Consensus 16 t~~~li~~~~~~~~~~~a~~~~~~m~~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~~f------------~-------- 74 (112)
+...+-.-+.+.|++++|...+.++... .+..--+..+-.+|+.+...+++..+...+ |
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 3445666777889999999999888741 222334566678888888888888888777 2
Q ss_pred ---HHHHhhCChhHHHHHHHHHHh
Q 033770 75 ---SACKIHGAVKLSHEVGKRLLE 95 (112)
Q Consensus 75 ---~~~~~~g~~~~a~~~~~~m~~ 95 (112)
-.+...+++..|-+.|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 333455778888877777653
No 254
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=54.29 E-value=30 Score=20.60 Aligned_cols=64 Identities=14% Similarity=0.205 Sum_probs=45.4
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHhccC-cHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhH
Q 033770 3 DEMYEKGLRANEVTFVAVLTACARAR-LVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSE 68 (112)
Q Consensus 3 ~~M~~~g~~p~~~t~~~li~~~~~~~-~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 68 (112)
+.|++.|++++.-=.. ++......+ ..-.|.++++.+.+ .+...+..|----++.+.+.|-+.+
T Consensus 6 ~~l~~~g~r~T~qR~~-Il~~L~~~~~~h~sa~ei~~~l~~-~~~~is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 6 QALKDAGLKVTLPRLK-ILEVLQQPECQHISAEELYKKLID-LGEEIGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp HHHHHTTCCCCHHHHH-HHHHHTSGGGSSEEHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHH-hCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 3467788887765543 455555555 55678999999986 5666677777777888888887654
No 255
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=52.51 E-value=28 Score=23.49 Aligned_cols=45 Identities=11% Similarity=0.005 Sum_probs=30.4
Q ss_pred hHHHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCC
Q 033770 2 VDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVV 47 (112)
Q Consensus 2 ~~~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~ 47 (112)
++-+.+.|+.|..+++.=++..++..=.++.+.++++.... .|..
T Consensus 211 ~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~-~g~~ 255 (331)
T 3qye_A 211 YNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFL-QGTE 255 (331)
T ss_dssp HHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHH-HCTT
T ss_pred HHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHH-CCcH
Confidence 34455667777777777777777776667777777777775 4544
No 256
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=51.95 E-value=11 Score=19.24 Aligned_cols=33 Identities=18% Similarity=0.146 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhhccCCCcCHHHHHHHHHHH-HhcC
Q 033770 31 ELGLELFHSLLGEFEVVPIMEHYGCVVDLL-GRAG 64 (112)
Q Consensus 31 ~~a~~~~~~m~~~~g~~p~~~~~~~li~~~-~~~g 64 (112)
++|...|-+|.++.++.|+ -||.-.|+.. ++--
T Consensus 3 eEae~aF~~lL~~~~V~s~-wsweqamr~i~i~DP 36 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDST-WSFSRIISELGTRDP 36 (59)
T ss_dssp THHHHHHHHHHHHTTCCSS-CCHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHcCCCCC-CcHHHHHHHhccCCC
Confidence 5677888888877788776 4666666666 4443
No 257
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=50.98 E-value=58 Score=22.55 Aligned_cols=40 Identities=13% Similarity=0.072 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHH---HHHHhhCChhHHHHHH
Q 033770 51 EHYGCVVDLLGRAGLLSEANEFLW---SACKIHGAVKLSHEVG 90 (112)
Q Consensus 51 ~~~~~li~~~~~~g~~~~A~~~f~---~~~~~~g~~~~a~~~~ 90 (112)
-+|-++..=|.+.+++++|.++++ ..+.++|+...|-.+.
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~ 78 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLA 78 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHH
Confidence 355567778999999999999984 4444455444444443
No 258
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=50.07 E-value=17 Score=19.12 Aligned_cols=35 Identities=17% Similarity=0.133 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcC
Q 033770 29 LVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAG 64 (112)
Q Consensus 29 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g 64 (112)
..++|...|..|..+.++.|+ -+|.-.+.-...--
T Consensus 13 t~eea~~~F~~LL~e~~V~~~-~tWe~~~~~i~~Dp 47 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPSN-ASWEQAMKMIINDP 47 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCTT-CCHHHHHHHHHTSG
T ss_pred CHHHHHHHHHHHHHHcCcCCC-CCHHHHHHHHccCc
Confidence 468899999999988898887 46666666554433
No 259
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=48.44 E-value=28 Score=20.78 Aligned_cols=62 Identities=15% Similarity=0.156 Sum_probs=32.3
Q ss_pred HhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhH
Q 033770 5 MYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSE 68 (112)
Q Consensus 5 M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 68 (112)
|++.|++++.-=- .++......+..-.|.++++.+++ .+...+..|----++.+.+.|-+.+
T Consensus 18 l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~-~~~~is~aTVYR~L~~L~e~Glv~~ 79 (150)
T 2xig_A 18 IKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQ-KDKNTSISSVYRILNFLEKENFISV 79 (150)
T ss_dssp HHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHH-HSTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHH-hCCCCCHhhHHHHHHHHHHCCcEEE
Confidence 4455655544332 233444444445566777777765 4545555555555666666665543
No 260
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=44.12 E-value=72 Score=21.59 Aligned_cols=71 Identities=10% Similarity=-0.030 Sum_probs=48.8
Q ss_pred hHHHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC-HH--HHHHHHHHH----HhcCChhHHHHHH
Q 033770 2 VDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPI-ME--HYGCVVDLL----GRAGLLSEANEFL 73 (112)
Q Consensus 2 ~~~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~-~~--~~~~li~~~----~~~g~~~~A~~~f 73 (112)
++-+.+.|+.|..+++.=++..+++.=.++.+.++++.+.. .|-... .. ..-+++..+ .+..++++..+++
T Consensus 232 ~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~-~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L 309 (345)
T 2qfz_A 232 HRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQS-EPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFL 309 (345)
T ss_dssp HHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTT-STTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 45567788999888888899999888889999999999886 564432 22 233444332 2346666666665
No 261
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=42.66 E-value=78 Score=21.57 Aligned_cols=39 Identities=8% Similarity=-0.017 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHH---HHHHhhCChhHHHHH
Q 033770 51 EHYGCVVDLLGRAGLLSEANEFLW---SACKIHGAVKLSHEV 89 (112)
Q Consensus 51 ~~~~~li~~~~~~g~~~~A~~~f~---~~~~~~g~~~~a~~~ 89 (112)
-+|-++..=|.+.+++++|.++++ ..+.++|+...|-.+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DL 75 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDL 75 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHH
Confidence 455667778899999999999984 444445554444443
No 262
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=42.08 E-value=34 Score=20.77 Aligned_cols=60 Identities=12% Similarity=0.093 Sum_probs=26.6
Q ss_pred hhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhcc--CCCcCHHHHHHHHHHHHhcCChh
Q 033770 6 YEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEF--EVVPIMEHYGCVVDLLGRAGLLS 67 (112)
Q Consensus 6 ~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~--g~~p~~~~~~~li~~~~~~g~~~ 67 (112)
++.|++++.-= -.++....+.+..-.|.++++.+.. . +...+..|----++.+.+.|-+.
T Consensus 25 ~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~-~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 25 RQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQ-AEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHH-HCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 34455443322 2334444444444455555555553 3 33334444444445555555443
No 263
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=41.88 E-value=45 Score=21.68 Aligned_cols=42 Identities=21% Similarity=0.278 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 31 ELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 31 ~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
++...+|..|.+ .||-- -..-|.+.-..+-..|++.+|.++|
T Consensus 131 ~~p~~if~~L~~-~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy 173 (223)
T 4aez_C 131 DEPVELFSFLAH-HHIGQESSIFYEEYANYFESRGLFQKADEVY 173 (223)
T ss_dssp SCHHHHHHHHHH-TTCSTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHH-CCcchhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 355677777776 66654 4455667777777788888888885
No 264
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=40.35 E-value=26 Score=17.71 Aligned_cols=25 Identities=12% Similarity=0.034 Sum_probs=19.0
Q ss_pred ccCcHHHHHHHHHHhhhccCCCcCH
Q 033770 26 RARLVELGLELFHSLLGEFEVVPIM 50 (112)
Q Consensus 26 ~~~~~~~a~~~~~~m~~~~g~~p~~ 50 (112)
..-+++.|...|..+.....++|+.
T Consensus 32 ~~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 32 NNWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred cCCCHHHHHHHHHHHHHcCCCCHHH
Confidence 3567999999999997534576664
No 265
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=40.10 E-value=62 Score=19.67 Aligned_cols=21 Identities=14% Similarity=0.222 Sum_probs=11.7
Q ss_pred HHHHhhCChhHHHHHHHHHHh
Q 033770 75 SACKIHGAVKLSHEVGKRLLE 95 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~ 95 (112)
..+...|++.+|.++++.-.+
T Consensus 109 ~~lE~~g~~~~A~~Vy~~Gi~ 129 (152)
T 4a1g_A 109 GHLEAQGELQHASAVLQRGIQ 129 (152)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 444555666666666655443
No 266
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=38.20 E-value=29 Score=15.39 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=16.3
Q ss_pred H-HHHHhhCChhHHHHHHHHHH
Q 033770 74 W-SACKIHGAVKLSHEVGKRLL 94 (112)
Q Consensus 74 ~-~~~~~~g~~~~a~~~~~~m~ 94 (112)
| ..|.+.|..++|+.+-+.++
T Consensus 8 W~eYYrsiG~~~eAeaIe~q~k 29 (33)
T 2bn5_A 8 WAEYYRSVGKIEEAEAIEKTLK 29 (33)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHHcccHHHHHHHHHHHH
Confidence 5 67788888888888876665
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=38.04 E-value=78 Score=20.24 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=36.5
Q ss_pred cCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 27 ARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 27 ~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
.+...+...+|..|.+ .|+-- -..-|.+.-..+...|++.+|.++|
T Consensus 92 ~~~~~~p~~if~~L~~-~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy 138 (202)
T 3esl_A 92 SNNFHESENTFKYMFN-KGIGTKLSLFYEEFSKLLENAQFFLEAKVLL 138 (202)
T ss_dssp TTCHHHHHHHHHHHHH-HTSSTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCCHHHHHHHHHH-CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3445688899999997 68765 5566778888889999999999996
No 268
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=37.43 E-value=11 Score=24.88 Aligned_cols=69 Identities=14% Similarity=0.048 Sum_probs=48.2
Q ss_pred HHHhhcCCCCCHHH---------HHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 3 DEMYEKGLRANEVT---------FVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 3 ~~M~~~g~~p~~~t---------~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
+...+.|++|.... ...+..+ ...|+-+.+...+++... .|..|....-..++.+.-+.|+..+.-+++
T Consensus 17 ~~~~~~G~~i~~~~~~l~p~~~~~~~l~~a-l~~gd~~~~~~~~~~al~-~g~~~~~i~~~~l~p~l~~vG~~w~~g~~~ 94 (258)
T 2i2x_B 17 NVALEKALTPEEAAEELYPKDELIYPIAKA-IFEGEEDDVVEGLQAAIE-AGKDPIDLIDDALMVGMGVVIRLYDEGVIF 94 (258)
T ss_dssp HHHHSCSSCHHHHHHHHSCCCTTSHHHHHH-HHTTCHHHHHHHHHHHHH-HSCCTTTHHHHTHHHHHHHHHHHHHTTSSC
T ss_pred HHHHhCCCCHHHHHHHhCCcHHHHHHHHHH-HHcCCHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 34445777776665 3344443 345888999999999986 688887777778888888777766555444
No 269
>1xqo_A 8-oxoguanine DNA glycosylase; helix-hairpin-helix, archaea, P.aerophilum, PA-AGOG native, DNA repair, lyase; 1.03A {Pyrobaculum aerophilum} SCOP: a.96.1.6 PDB: 1xqp_A*
Probab=37.08 E-value=38 Score=22.59 Aligned_cols=33 Identities=12% Similarity=0.057 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhhccCCCc---CHHHHHHHHHHHHhcCC
Q 033770 31 ELGLELFHSLLGEFEVVP---IMEHYGCVVDLLGRAGL 65 (112)
Q Consensus 31 ~~a~~~~~~m~~~~g~~p---~~~~~~~li~~~~~~g~ 65 (112)
+++...+..+.++.|++| |..+| ++.+..+.|+
T Consensus 197 ~~~~~~W~~Var~sgIPplHLDSilW--lig~~~~~~~ 232 (256)
T 1xqo_A 197 EAVQKIWDAVARETGIPPLHLDTLLW--LAGRAVLYGE 232 (256)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHH--HHHHHHTTCC
T ss_pred HHHHHHHHHHHHccCCCchhhhHHHH--Hhcccccccc
Confidence 577888888887789887 88888 7777776665
No 270
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.87 E-value=36 Score=15.98 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=9.9
Q ss_pred HHHHHHhcCChhHHHHHH
Q 033770 56 VVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 56 li~~~~~~g~~~~A~~~f 73 (112)
.+.++..+|+++.|.+.+
T Consensus 26 a~~AL~~~~n~e~A~~~L 43 (47)
T 2ekk_A 26 AMEALLNTSTMEQATEYL 43 (47)
T ss_dssp HHHHHHHSCSHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 344555556666666553
No 271
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.78 E-value=61 Score=22.77 Aligned_cols=45 Identities=9% Similarity=-0.042 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHH-----------------H---HHHHhhCChhHHHHHHHHHHh
Q 033770 51 EHYGCVVDLLGRAGLLSEANEFL-----------------W---SACKIHGAVKLSHEVGKRLLE 95 (112)
Q Consensus 51 ~~~~~li~~~~~~g~~~~A~~~f-----------------~---~~~~~~g~~~~a~~~~~~m~~ 95 (112)
.+...+-+-|.+.|++++|.+.+ | +.+...+++..+....++...
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 35567888899999999999999 2 777778899999999998875
No 272
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=35.80 E-value=41 Score=22.44 Aligned_cols=70 Identities=13% Similarity=0.003 Sum_probs=44.9
Q ss_pred hHHHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHH----HhcCChhHHHHHH
Q 033770 2 VDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLL----GRAGLLSEANEFL 73 (112)
Q Consensus 2 ~~~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~----~~~g~~~~A~~~f 73 (112)
++-+.+.|+.|..+++.=++..++..=.++.+.++++.+.. .|...-....-+++..+ .+ .++++..++|
T Consensus 177 ~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~-~g~~~l~~v~lail~~~~~~Ll~-~d~~~~l~~l 250 (310)
T 3hzj_A 177 HSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLC-EGLNIIFHVALALLKTSKEDLLQ-ADFEGALKFF 250 (310)
T ss_dssp HHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHH-HCTTHHHHHHHHHHHHTHHHHHT-CCHHHHHHHH
T ss_pred HHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHH-CCcHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 44566778888888888888888887788888888888886 46432222222333222 22 3566666655
No 273
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=35.12 E-value=36 Score=19.94 Aligned_cols=62 Identities=18% Similarity=-0.036 Sum_probs=40.6
Q ss_pred HhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhH
Q 033770 5 MYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSE 68 (112)
Q Consensus 5 M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 68 (112)
.++.|++++.-= ..++......+..-.|.++++.+.+ .+...+..|----++.+.+.|-+.+
T Consensus 5 ~r~~g~r~T~qR-~~Il~~L~~~~~h~sa~eI~~~l~~-~~~~is~aTVYR~L~~L~e~Glv~~ 66 (139)
T 3mwm_A 5 GPPVKGRATRQR-AAVSAALQEVEEFRSAQELHDMLKH-KGDAVGLTTVYRTLQSLADAGEVDV 66 (139)
T ss_dssp -----CHHHHHH-HHHHHHHTTCSSCEEHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTTSSEE
T ss_pred cCCCCCccCHHH-HHHHHHHHhCCCCCCHHHHHHHHHH-hCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 445565554332 3456666666666678999999986 5766777777777888888887655
No 274
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=35.06 E-value=27 Score=22.55 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=11.7
Q ss_pred HHHHhhCChhHHHHHHHHHH
Q 033770 75 SACKIHGAVKLSHEVGKRLL 94 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~ 94 (112)
..|.++|.+++|.++++..-
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHccchHHHHHHHHHHh
Confidence 45566666666666666543
No 275
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=34.35 E-value=30 Score=23.52 Aligned_cols=39 Identities=8% Similarity=0.152 Sum_probs=22.3
Q ss_pred HHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 033770 4 EMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLG 42 (112)
Q Consensus 4 ~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 42 (112)
-+.+.|+.|..+++.=++..++..=.++.+.++++.+..
T Consensus 218 hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~ 256 (334)
T 2qq8_A 218 HFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCR 256 (334)
T ss_dssp HHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 344455666655555555555555555666666665554
No 276
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=32.92 E-value=38 Score=19.56 Aligned_cols=48 Identities=13% Similarity=-0.006 Sum_probs=35.0
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhH
Q 033770 20 VLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSE 68 (112)
Q Consensus 20 li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 68 (112)
++......+..-.|.++++.+++ .+...+..|---.++.+.+.|-+.+
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~-~~~~is~~TVYR~L~~L~e~Glv~~ 63 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRR-RGENIGLTTVYRTLQSMASSGLVDT 63 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHH-TTCCCCHHHHHHHHHHHHTTTSEEE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHH-hCCCCCHhhHHHHHHHHHHCCCEEE
Confidence 45555555666678899999986 5666677777777888888887654
No 277
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=32.56 E-value=88 Score=19.22 Aligned_cols=40 Identities=10% Similarity=0.146 Sum_probs=18.7
Q ss_pred HHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 33 GLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 33 a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
...+|..|.+ .|+-- -..-|.+.-..+-..|++.+|.++|
T Consensus 79 p~~if~~L~~-~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy 119 (164)
T 2wvi_A 79 PLDMYSYLHN-QGIGVSLAQFYISWAEEYEARENFRKADAIF 119 (164)
T ss_dssp HHHHHHHHHH-TTSSTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHH-CCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3445555554 44433 2333344444455555555555554
No 278
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=31.15 E-value=94 Score=19.12 Aligned_cols=49 Identities=16% Similarity=0.074 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHH--------------H---HHHHhhCChhHHHHHHHHHHhcC
Q 033770 49 IMEHYGCVVDLLGRAGLLSEANEFL--------------W---SACKIHGAVKLSHEVGKRLLELQ 97 (112)
Q Consensus 49 ~~~~~~~li~~~~~~g~~~~A~~~f--------------~---~~~~~~g~~~~a~~~~~~m~~~~ 97 (112)
+....+.-++.....|.-|.-.++. . .+|.+.|+..+|.++.++..+.+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3444555566666666665555554 1 88888888888888888776543
No 279
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=30.46 E-value=82 Score=18.23 Aligned_cols=47 Identities=13% Similarity=0.016 Sum_probs=35.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcC
Q 033770 16 TFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAG 64 (112)
Q Consensus 16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g 64 (112)
..+.+|.=|...|+.++|.+.++.+.. ..+. ......++..++-+.+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~-p~f~-~e~V~~~i~~alE~~~ 55 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEV-PHFH-HELVYEAIVMVLESTG 55 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC-GGGH-HHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCC-CccH-HHHHHHHHHHHHcCCC
Confidence 456789999999999999999999864 2333 3455667777777765
No 280
>1u9p_A PARC; unknown function; 1.90A {Escherichia coli} SCOP: a.43.1.1
Probab=30.25 E-value=79 Score=18.50 Aligned_cols=61 Identities=18% Similarity=0.208 Sum_probs=40.7
Q ss_pred hhcCCCCCHHHHHHHHHHHhccCcH---------HHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCCh
Q 033770 6 YEKGLRANEVTFVAVLTACARARLV---------ELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLL 66 (112)
Q Consensus 6 ~~~g~~p~~~t~~~li~~~~~~~~~---------~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~ 66 (112)
+++|...|...-..|-.+....+.. ++-.+.+..+.+..+-..+...+.-++..+...+++
T Consensus 38 k~eGrSLN~eIv~~Le~sl~~~~~~~~~~~s~~~~~l~~~ir~~a~~~~~s~~~ei~~r~~~~~~~~~~~ 107 (120)
T 1u9p_A 38 EENGRSVNSEIYQRVMESFKKEGRIGGTGGSGGGREVLDLVRKVAEENGRSVNSEIYQRVMESFKKEGRI 107 (120)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHTTSCCC-----CSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCCHHHHHHHHHHHHhcccCCcccccccccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhc
Confidence 3567788888777777776544431 244455555555456667788899898888777765
No 281
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=29.61 E-value=74 Score=17.42 Aligned_cols=39 Identities=13% Similarity=-0.045 Sum_probs=28.5
Q ss_pred CcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHH
Q 033770 28 RLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANE 71 (112)
Q Consensus 28 ~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 71 (112)
+..+.|.+++..+.+ .| ...|..+++++.+.|+.+-|..
T Consensus 51 t~~~~ar~Lld~L~~-rG----~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLET-RG----SQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTT-SC----TTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHH-cC----hHHHHHHHHHHHHcCcHHHHHH
Confidence 578888888888886 33 4677888888877777665543
No 282
>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}
Probab=29.37 E-value=1.3e+02 Score=20.13 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=41.0
Q ss_pred HHhh-cCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcC
Q 033770 4 EMYE-KGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAG 64 (112)
Q Consensus 4 ~M~~-~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g 64 (112)
+..+ +.+.||..+ .++...-+.-.-|....+|..+.+ ..+..+..++..++..++..+
T Consensus 150 rlik~e~l~p~~~~--lll~~iL~l~WtE~~~~Vlq~lL~-~k~~L~~~~i~~Lv~~L~~~a 208 (264)
T 2ilr_A 150 CLVKMESLEPDAQV--LMLGQILELPWKEETFLVLQSLLE-RQVEMTPEKFSVLMEKLCKKG 208 (264)
T ss_dssp HHHHCTTSCHHHHH--HHHHHHHHSCCCHHHHHHHHHHHT-TCCCCCHHHHHHHHHHHHC--
T ss_pred HHHHhccCCHHHHH--HHHHHHHhccchHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHh
Confidence 3444 667777776 233333345566888999999997 789999999999999987554
No 283
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=28.00 E-value=1.6e+02 Score=20.73 Aligned_cols=76 Identities=14% Similarity=-0.036 Sum_probs=48.7
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhhccCC----CcCHHHHHHHHHHHHhcCChhHHHHHH-------------H-------
Q 033770 19 AVLTACARARLVELGLELFHSLLGEFEV----VPIMEHYGCVVDLLGRAGLLSEANEFL-------------W------- 74 (112)
Q Consensus 19 ~li~~~~~~~~~~~a~~~~~~m~~~~g~----~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~------- 74 (112)
-+..-|...|++.+|..++.++.++..- .--+..|-.-+..|...|++.++...+ +
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 3566777788888887777777752111 112344566677777888888887776 1
Q ss_pred ----HHHH-hhCChhHHHHHHHHHH
Q 033770 75 ----SACK-IHGAVKLSHEVGKRLL 94 (112)
Q Consensus 75 ----~~~~-~~g~~~~a~~~~~~m~ 94 (112)
-.+. ..+++..|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 3334 5677777777666553
No 284
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=27.41 E-value=51 Score=21.94 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=22.4
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhh
Q 033770 18 VAVLTACARARLVELGLELFHSLLG 42 (112)
Q Consensus 18 ~~li~~~~~~~~~~~a~~~~~~m~~ 42 (112)
|.|++-|-..|+++.|.+++++++.
T Consensus 38 n~l~R~FL~~gkl~AAr~l~~rlp~ 62 (270)
T 3cqc_A 38 NAIMRKFLASKKHEAAKEVFVKIPQ 62 (270)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHCCh
Confidence 5789999999999999999998774
No 285
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=26.47 E-value=60 Score=17.58 Aligned_cols=30 Identities=17% Similarity=0.137 Sum_probs=19.3
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 033770 9 GLRANEVTFVAVLTACARARLVELGLELFH 38 (112)
Q Consensus 9 g~~p~~~t~~~li~~~~~~~~~~~a~~~~~ 38 (112)
+++|++-||+-+....-+..--.+++.+..
T Consensus 31 nLPpgVnTW~qI~el~qkk~i~~~~m~iik 60 (81)
T 2ko4_A 31 NIPPNINTWQQVTALAQQKLLTPQDMEAAK 60 (81)
T ss_dssp SCCTTTCBHHHHHHHHTTTSSCHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHcCCCCHHHHHHHH
Confidence 678999999887776555444444444443
No 286
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=25.73 E-value=1.1e+02 Score=18.18 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=18.1
Q ss_pred HHHHhhCChhHHHHHHHHHHhcCCCCC
Q 033770 75 SACKIHGAVKLSHEVGKRLLELQPEHC 101 (112)
Q Consensus 75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~ 101 (112)
-++.+.|+.++|.+..+.+.+..|.+.
T Consensus 86 vg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 86 IGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 566667777777777777766666653
No 287
>2whn_A PILC, pilus assembly protein PILC; transport, transmembrane, pilus biogenesis, protein transpor; 2.05A {Thermus thermophilus}
Probab=25.50 E-value=49 Score=18.27 Aligned_cols=22 Identities=23% Similarity=0.060 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHH
Q 033770 52 HYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 52 ~~~~li~~~~~~g~~~~A~~~f 73 (112)
.+..+|..--+.|+++++.+-+
T Consensus 78 ~~~~~i~~GE~sG~L~~~L~~l 99 (116)
T 2whn_A 78 LYVNLVRAGETSGGLDLILDRL 99 (116)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHH
Confidence 3555666666666666665554
No 288
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=25.11 E-value=66 Score=20.10 Aligned_cols=24 Identities=4% Similarity=0.088 Sum_probs=20.3
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhh
Q 033770 19 AVLTACARARLVELGLELFHSLLG 42 (112)
Q Consensus 19 ~li~~~~~~~~~~~a~~~~~~m~~ 42 (112)
.+|.++.+.|.+|+|..+..++..
T Consensus 37 qvI~GLlql~~ydea~~yI~~~~~ 60 (192)
T 1ixm_A 37 QLIKGNLSLQKYDRVFEMIEEMVI 60 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 578888899999999988888775
No 289
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=24.81 E-value=59 Score=16.19 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=18.6
Q ss_pred HHhhcCCCCCHHHHHHHHHHHhccCc--HHHHHHHHHHhh
Q 033770 4 EMYEKGLRANEVTFVAVLTACARARL--VELGLELFHSLL 41 (112)
Q Consensus 4 ~M~~~g~~p~~~t~~~li~~~~~~~~--~~~a~~~~~~m~ 41 (112)
.+.+.|+.++.+ ..|..+.|. ++.|++.+.+|.
T Consensus 15 ~L~eMGFd~era-----e~Alk~Tg~~Gle~AmewL~k~~ 49 (54)
T 2cos_A 15 ELVNAGCDQEMA-----GRALKQTGSRSIEAALEYISKMS 49 (54)
T ss_dssp HHHHHHCCHHHH-----HHHHHHHTSCCHHHHHHHHHHHS
T ss_pred HHHHcCCCHHHH-----HHHHHHhCcccHHHHHHHHHHhc
Confidence 334445555433 234455555 777777777764
No 290
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=24.77 E-value=1.2e+02 Score=18.18 Aligned_cols=48 Identities=13% Similarity=-0.004 Sum_probs=35.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCC
Q 033770 16 TFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGL 65 (112)
Q Consensus 16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 65 (112)
..+.+|.=|...|++++|.+.++.+.. ..+. ......++..++-+.++
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~-p~f~-~e~V~~~i~~alE~~~~ 58 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEV-PHFH-HELVYEAIVMVLESTGE 58 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC-GGGH-HHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC-Ccch-HHHHHHHHHHHHcCCCh
Confidence 456789999999999999999999864 2332 34556677777777543
No 291
>4ewi_A Nacht, LRR and PYD domains-containing protein 4; NLR proteins, death domain, pyrin domain, NLRP4, ASC, innate system, inflammasome, apoptosis; 2.28A {Homo sapiens}
Probab=23.14 E-value=58 Score=18.70 Aligned_cols=25 Identities=8% Similarity=0.186 Sum_probs=17.5
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhh
Q 033770 18 VAVLTACARARLVELGLELFHSLLG 42 (112)
Q Consensus 18 ~~li~~~~~~~~~~~a~~~~~~m~~ 42 (112)
+-|+..|....-++-+.++|++|.+
T Consensus 59 ~lLv~~y~~~~A~~vtl~if~~mn~ 83 (113)
T 4ewi_A 59 NLLIKHYEEQQAWNITLRIFQKMDR 83 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChhHHHHHHHHHHHHhCH
Confidence 4456666666777778888887764
No 292
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=22.82 E-value=1.6e+02 Score=18.84 Aligned_cols=43 Identities=7% Similarity=-0.031 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHH------------------H-HHHHhhCChhHHHHHHHHHHh
Q 033770 52 HYGCVVDLLGRAGLLSEANEFL------------------W-SACKIHGAVKLSHEVGKRLLE 95 (112)
Q Consensus 52 ~~~~li~~~~~~g~~~~A~~~f------------------~-~~~~~~g~~~~a~~~~~~m~~ 95 (112)
.|--.++.+ .++...++.++| | ..+...|++.+|.++++.-.+
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE 143 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444433 245566888888 4 777888999999999998775
No 293
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=22.66 E-value=1.5e+02 Score=19.19 Aligned_cols=48 Identities=13% Similarity=0.106 Sum_probs=35.7
Q ss_pred HHHHHHhcc---CcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChh
Q 033770 19 AVLTACARA---RLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLS 67 (112)
Q Consensus 19 ~li~~~~~~---~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 67 (112)
-+|+|+-|+ .+.|.|+..+.+|.. .|--|..+.=-.++.+.--.|.-+
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~-~GEDp~~IaRRLvi~AsEDIGlAd 87 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVE-AGEDPNFIFRRLLISACEDIGLAD 87 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHTTGGGS
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhhccCCC
Confidence 467777654 789999999999996 777777666667777776666643
No 294
>2hm2_Q ASC2, pyrin-only protein 1, PAAD-only; pyrin domain, six helix bundle, apoptosis; NMR {Homo sapiens}
Probab=22.33 E-value=64 Score=17.45 Aligned_cols=25 Identities=8% Similarity=0.064 Sum_probs=18.7
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhh
Q 033770 18 VAVLTACARARLVELGLELFHSLLG 42 (112)
Q Consensus 18 ~~li~~~~~~~~~~~a~~~~~~m~~ 42 (112)
+-|++.|....-++-+..+|+.|.+
T Consensus 54 ~lLv~~y~~~~A~~vt~~if~~mn~ 78 (89)
T 2hm2_Q 54 DKLVASYYEDYAAELVVAVLRDMRM 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCHHHHHHHHHHHHHHcCH
Confidence 3456666677788888899988875
No 295
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.19 E-value=2.1e+02 Score=20.16 Aligned_cols=88 Identities=13% Similarity=0.018 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhh---ccCCCcC--HHHHHHHHHHHHhcCChhHHHHHHH---HHHHhhCChhHH
Q 033770 15 VTFVAVLTACARARLVELGLELFHSLLG---EFEVVPI--MEHYGCVVDLLGRAGLLSEANEFLW---SACKIHGAVKLS 86 (112)
Q Consensus 15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~---~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~f~---~~~~~~g~~~~a 86 (112)
..+.--++.|...+++..|..+..+... .....|+ ..-+...+..+...+++.+|-+.|+ ..+...++....
T Consensus 178 e~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~ 257 (445)
T 4b4t_P 178 QFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKW 257 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHH
Confidence 3566678888899999999998888642 1122333 3456788888999999999999984 677777887777
Q ss_pred HHHHHHHHh---cCCCCCc
Q 033770 87 HEVGKRLLE---LQPEHCR 102 (112)
Q Consensus 87 ~~~~~~m~~---~~~~~~~ 102 (112)
..++..+.- +.|.++.
T Consensus 258 ~~~L~~~v~~~iLa~~~~~ 276 (445)
T 4b4t_P 258 KPVLSHIVYFLVLSPYGNL 276 (445)
T ss_dssp HHHHHHHHHHHHHSSCSST
T ss_pred HHHHHHHHHHHHhCCCCch
Confidence 766666552 4554443
No 296
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=22.17 E-value=1.2e+02 Score=17.18 Aligned_cols=59 Identities=17% Similarity=0.078 Sum_probs=38.2
Q ss_pred HHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH--HHHH-HhhCChhHHHHHHHHH
Q 033770 32 LGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL--WSAC-KIHGAVKLSHEVGKRL 93 (112)
Q Consensus 32 ~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f--~~~~-~~~g~~~~a~~~~~~m 93 (112)
.+.++-++... .|+.|+..+..-++..|...+. .|.++. |-+| ...++.+-..+.+.++
T Consensus 27 sae~L~eEfde-fGi~~~d~VldKc~ELC~~y~l--da~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 27 SAQQLAEELQI-FGLDCEEALIEKLVELCVQYGQ--NEEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CHHHHHHHHHH-HTCBCCHHHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred cHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 45667777775 8999988888888888888885 367766 7333 2333444444444443
No 297
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=22.16 E-value=2.5e+02 Score=21.00 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=33.8
Q ss_pred HHHHhcCChhHHHHHH---------------H--HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770 58 DLLGRAGLLSEANEFL---------------W--SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL 107 (112)
Q Consensus 58 ~~~~~~g~~~~A~~~f---------------~--~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l 107 (112)
..-.+.|+++.|.+.| | ++....|+.++|..+|+...+ + .++|..|
T Consensus 293 r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~--~~fYg~l 355 (618)
T 1qsa_A 293 RMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--Q--RGFYPMV 355 (618)
T ss_dssp HHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--S--CSHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CChHHHH
Confidence 3334668888888888 5 777788999999999998764 2 3555544
No 298
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=21.82 E-value=28 Score=19.61 Aligned_cols=15 Identities=20% Similarity=0.501 Sum_probs=10.7
Q ss_pred HHHhhcCCCCCHHHH
Q 033770 3 DEMYEKGLRANEVTF 17 (112)
Q Consensus 3 ~~M~~~g~~p~~~t~ 17 (112)
++++..|+.||.+.+
T Consensus 27 nELk~dG~ePDIiL~ 41 (103)
T 2pk8_A 27 NELKMDGFNPDIILF 41 (103)
T ss_dssp HHHHHTTCCCCEEEE
T ss_pred HHHHhcCCCCCeEEE
Confidence 466777888887654
No 299
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.20 E-value=2.1e+02 Score=19.81 Aligned_cols=53 Identities=15% Similarity=0.118 Sum_probs=38.8
Q ss_pred HHHHhccCcHHHHHHHHHHhhhcc---------------CCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770 21 LTACARARLVELGLELFHSLLGEF---------------EVVPIMEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 21 i~~~~~~~~~~~a~~~~~~m~~~~---------------g~~p~~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
+..+.+..+.+++....+.+.... ...+-+.....+.+.|.+.|+.++|.+++
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l 150 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLL 150 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 445567778899999988764310 11334566778889999999999999988
No 300
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=20.86 E-value=1e+02 Score=18.78 Aligned_cols=45 Identities=13% Similarity=-0.080 Sum_probs=30.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHh
Q 033770 16 TFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGR 62 (112)
Q Consensus 16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~ 62 (112)
...++|.=|...+++++|.+.++.+.. ..+.| .+....+-.++-+
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~-p~~~~-~~V~~~I~~aldr 56 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNL-GEMKS-GVPVLAVSLALEG 56 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC-SGGGG-HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCC-cccHH-HHHHHHHHHHHcC
Confidence 356789999999999999999999874 33333 2333344444444
No 301
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=20.36 E-value=1.8e+02 Score=18.63 Aligned_cols=48 Identities=15% Similarity=0.024 Sum_probs=31.7
Q ss_pred hccCcHHHHHHHHHHhhhccCCCc----------------C-HHHHHHHHHHHHhcCChhHHHHHH
Q 033770 25 ARARLVELGLELFHSLLGEFEVVP----------------I-MEHYGCVVDLLGRAGLLSEANEFL 73 (112)
Q Consensus 25 ~~~~~~~~a~~~~~~m~~~~g~~p----------------~-~~~~~~li~~~~~~g~~~~A~~~f 73 (112)
-+..+...|....+.+.. -.+.. | ..-|+.+-..+...|+.++|.+.|
T Consensus 73 ~klKdYkkA~~~le~il~-~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~ 137 (242)
T 3kae_A 73 KKKKDYKKAIKSLESILE-GKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHY 137 (242)
T ss_dssp HHTTCHHHHHHHHHHHHT-TCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-cccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHh
Confidence 356777788877777773 23431 2 234566666777778888888877
Done!